Metagenome / Metatranscriptome Family F073954

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	55 residues
Representative Sequence	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Number of Associated Samples	82
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.33 %
% of genes near scaffold ends (potentially truncated)	26.67 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.833 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (44.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.81% β-sheet: 0.00% Coil/Unstructured: 48.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
f.37.1.1: ABC transporter transmembrane region	d4a82a1	4a82	0.8749
f.5.1.0: automated matches	d1yc9a_	1yc9	0.84542
a.118.1.14: MIF4G domain-like	d1n52a3	1n52	0.8321
a.13.1.1: RAP domain	d2fcwa1	2fcw	0.83146
a.2.1.1: GreA transcript cleavage protein, N-terminal domain	d2f23a1	2f23	0.82446

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00072	Response_reg	4.17
PF11066	DUF2867	2.50
PF00196	GerE	1.67
PF13412	HTH_24	1.67
PF13545	HTH_Crp_2	1.67
PF04909	Amidohydro_2	1.67
PF13424	TPR_12	1.67
PF02738	MoCoBD_1	1.67
PF10074	DUF2285	0.83
PF03466	LysR_substrate	0.83
PF07508	Recombinase	0.83
PF13340	DUF4096	0.83
PF13640	2OG-FeII_Oxy_3	0.83
PF12849	PBP_like_2	0.83
PF13204	DUF4038	0.83
PF00239	Resolvase	0.83
PF00313	CSD	0.83
PF00563	EAL	0.83
PF10531	SLBB	0.83
PF07715	Plug	0.83
PF01339	CheB_methylest	0.83
PF06983	3-dmu-9_3-mt	0.83
PF03401	TctC	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.67
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.67
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.83
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.83
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.83
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.83
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.83
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
All Organisms	root	All Organisms	34.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
cellular organisms	root	All Organisms → cellular organisms	34.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.17 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.17 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	3.33 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	2.50 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.17 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.33 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	2.50 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.33 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.50 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.83 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.83 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.83 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.33 %
Bradyrhizobium sp. AC87j1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AC87j1	2.50 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.83 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.83 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10011062	All Organisms → cellular organisms → Bacteria → Proteobacteria	4946	Open in IMG/M
3300001661\|JGI12053J15887_10014374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4381	Open in IMG/M
3300002245\|JGIcombinedJ26739_100408561	Not Available	1236	Open in IMG/M
3300002245\|JGIcombinedJ26739_100454837	Not Available	1158	Open in IMG/M
3300002245\|JGIcombinedJ26739_101104109	Not Available	680	Open in IMG/M
3300002245\|JGIcombinedJ26739_101500533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	569	Open in IMG/M
3300002914\|JGI25617J43924_10056929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1426	Open in IMG/M
3300004092\|Ga0062389_102496581	Not Available	685	Open in IMG/M
3300005445\|Ga0070708_100850718	Not Available	857	Open in IMG/M
3300005467\|Ga0070706_101165143	Not Available	709	Open in IMG/M
3300005468\|Ga0070707_102021699	Not Available	544	Open in IMG/M
3300005536\|Ga0070697_100902982	Not Available	784	Open in IMG/M
3300005568\|Ga0066703_10224054	Not Available	1143	Open in IMG/M
3300005610\|Ga0070763_10014528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3339	Open in IMG/M
3300005610\|Ga0070763_10540225	Not Available	670	Open in IMG/M
3300006172\|Ga0075018_10722921	Not Available	540	Open in IMG/M
3300006176\|Ga0070765_101441261	Not Available	648	Open in IMG/M
3300006176\|Ga0070765_102309733	Not Available	501	Open in IMG/M
3300007265\|Ga0099794_10210317	Not Available	997	Open in IMG/M
3300007788\|Ga0099795_10323491	Not Available	683	Open in IMG/M
3300009143\|Ga0099792_10778578	Not Available	625	Open in IMG/M
3300010880\|Ga0126350_12294237	Not Available	1293	Open in IMG/M
3300011271\|Ga0137393_10537838	Not Available	1002	Open in IMG/M
3300012199\|Ga0137383_10484894	Not Available	905	Open in IMG/M
3300012202\|Ga0137363_10507761	Not Available	1013	Open in IMG/M
3300012350\|Ga0137372_11098805	Not Available	546	Open in IMG/M
3300012362\|Ga0137361_11502996	Not Available	595	Open in IMG/M
3300012363\|Ga0137390_10165501	All Organisms → cellular organisms → Bacteria → Proteobacteria	2199	Open in IMG/M
3300012363\|Ga0137390_10496950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1194	Open in IMG/M
3300012683\|Ga0137398_10327637	Not Available	1033	Open in IMG/M
3300012924\|Ga0137413_10346371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AC87j1	1053	Open in IMG/M
3300012925\|Ga0137419_10508045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AC87j1	958	Open in IMG/M
3300012929\|Ga0137404_10065998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	2824	Open in IMG/M
3300012929\|Ga0137404_11670762	Not Available	591	Open in IMG/M
3300012930\|Ga0137407_12157351	Not Available	532	Open in IMG/M
3300012944\|Ga0137410_10097581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300012944\|Ga0137410_11169678	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012944\|Ga0137410_11616782	Not Available	568	Open in IMG/M
3300015052\|Ga0137411_1383563	Not Available	4018	Open in IMG/M
3300015089\|Ga0167643_1016364	Not Available	1118	Open in IMG/M
3300015241\|Ga0137418_10592846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AC87j1	870	Open in IMG/M
3300015242\|Ga0137412_10047019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3518	Open in IMG/M
3300015245\|Ga0137409_10180224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1915	Open in IMG/M
3300015245\|Ga0137409_10541710	Not Available	990	Open in IMG/M
3300015245\|Ga0137409_10737616	Not Available	820	Open in IMG/M
3300015264\|Ga0137403_10048361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4398	Open in IMG/M
3300019877\|Ga0193722_1005246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3233	Open in IMG/M
3300019885\|Ga0193747_1029119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1369	Open in IMG/M
3300019887\|Ga0193729_1008404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4756	Open in IMG/M
3300019887\|Ga0193729_1011674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3948	Open in IMG/M
3300019887\|Ga0193729_1024793	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300019889\|Ga0193743_1009366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	5687	Open in IMG/M
3300019889\|Ga0193743_1044059	Not Available	1994	Open in IMG/M
3300019889\|Ga0193743_1045612	Not Available	1944	Open in IMG/M
3300019889\|Ga0193743_1146444	Not Available	817	Open in IMG/M
3300019889\|Ga0193743_1147997	Not Available	811	Open in IMG/M
3300020021\|Ga0193726_1082728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1478	Open in IMG/M
3300020021\|Ga0193726_1130206	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300020021\|Ga0193726_1245784	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300020034\|Ga0193753_10076364	Not Available	1720	Open in IMG/M
3300020034\|Ga0193753_10091433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1534	Open in IMG/M
3300020034\|Ga0193753_10115110	Not Available	1322	Open in IMG/M
3300020034\|Ga0193753_10169714	Not Available	1024	Open in IMG/M
3300020034\|Ga0193753_10275573	Not Available	735	Open in IMG/M
3300020034\|Ga0193753_10391784	Not Available	560	Open in IMG/M
3300020061\|Ga0193716_1188709	Not Available	794	Open in IMG/M
3300020062\|Ga0193724_1014998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1645	Open in IMG/M
3300020140\|Ga0179590_1222366	Not Available	517	Open in IMG/M
3300020583\|Ga0210401_10446545	Not Available	1156	Open in IMG/M
3300021181\|Ga0210388_10248822	Not Available	1560	Open in IMG/M
3300021181\|Ga0210388_10894971	Not Available	765	Open in IMG/M
3300021363\|Ga0193699_10413822	Not Available	558	Open in IMG/M
3300021405\|Ga0210387_10394865	Not Available	1225	Open in IMG/M
3300021405\|Ga0210387_10742498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300021405\|Ga0210387_11545251	Not Available	566	Open in IMG/M
3300021411\|Ga0193709_1074520	Not Available	762	Open in IMG/M
3300021411\|Ga0193709_1090812	Not Available	668	Open in IMG/M
3300021432\|Ga0210384_10401923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1234	Open in IMG/M
3300021475\|Ga0210392_11388731	Not Available	525	Open in IMG/M
3300021478\|Ga0210402_10377406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1316	Open in IMG/M
3300021559\|Ga0210409_10949920	Not Available	734	Open in IMG/M
3300022756\|Ga0222622_10659377	Not Available	758	Open in IMG/M
3300024288\|Ga0179589_10166706	Not Available	948	Open in IMG/M
3300025474\|Ga0208479_1038828	Not Available	968	Open in IMG/M
3300025922\|Ga0207646_11234479	Not Available	654	Open in IMG/M
3300026555\|Ga0179593_1099256	All Organisms → cellular organisms → Bacteria → Proteobacteria	2857	Open in IMG/M
3300026557\|Ga0179587_10123258	Not Available	1593	Open in IMG/M
3300027164\|Ga0208994_1076412	Not Available	503	Open in IMG/M
3300027528\|Ga0208985_1014664	Not Available	1500	Open in IMG/M
3300027616\|Ga0209106_1022458	Not Available	1377	Open in IMG/M
3300027663\|Ga0208990_1099700	Not Available	808	Open in IMG/M
3300027669\|Ga0208981_1012851	All Organisms → cellular organisms → Bacteria → Proteobacteria	2122	Open in IMG/M
3300027678\|Ga0209011_1028730	Not Available	1775	Open in IMG/M
3300027855\|Ga0209693_10026118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2830	Open in IMG/M
3300027879\|Ga0209169_10224726	Not Available	983	Open in IMG/M
3300027895\|Ga0209624_10341309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	998	Open in IMG/M
3300027895\|Ga0209624_10797044	Not Available	620	Open in IMG/M
3300027908\|Ga0209006_10457526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300028047\|Ga0209526_10162193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1562	Open in IMG/M
3300028047\|Ga0209526_10456776	Not Available	839	Open in IMG/M
3300028047\|Ga0209526_10545558	Not Available	750	Open in IMG/M
3300028047\|Ga0209526_10690911	Not Available	644	Open in IMG/M
3300028784\|Ga0307282_10448273	Not Available	626	Open in IMG/M
3300028819\|Ga0307296_10168374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1186	Open in IMG/M
3300028828\|Ga0307312_10546366	Not Available	766	Open in IMG/M
3300028906\|Ga0308309_10009663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5988	Open in IMG/M
3300030846\|Ga0075403_11558464	Not Available	725	Open in IMG/M
3300030916\|Ga0075386_12021457	Not Available	559	Open in IMG/M
3300031057\|Ga0170834_104413576	Not Available	653	Open in IMG/M
3300031231\|Ga0170824_118611628	Not Available	547	Open in IMG/M
3300031231\|Ga0170824_122823615	All Organisms → cellular organisms → Bacteria → Proteobacteria	1960	Open in IMG/M
3300031446\|Ga0170820_14684660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300031446\|Ga0170820_15913238	Not Available	778	Open in IMG/M
3300031469\|Ga0170819_10340817	All Organisms → cellular organisms → Bacteria → Proteobacteria	1032	Open in IMG/M
3300031474\|Ga0170818_100568504	Not Available	757	Open in IMG/M
3300031474\|Ga0170818_102214521	Not Available	802	Open in IMG/M
3300031474\|Ga0170818_115098553	Not Available	695	Open in IMG/M
3300031474\|Ga0170818_115342609	Not Available	509	Open in IMG/M
3300034195\|Ga0370501_0201667	Not Available	701	Open in IMG/M
3300034384\|Ga0372946_0500393	Not Available	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.50%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.50%
Sediment	Environmental → Aquatic → Sediment	1.67%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.83%
Loam	Environmental → Terrestrial → Soil → Loam	25.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030846	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100110623	3300001661	Forest Soil	MADRDPELERLLKVERLASERYERLRGYPGEAQAVALASLLEAREVVREYRSKHP*
JGI12053J15887_1001437411	3300001661	Forest Soil	MRGRSFRRFRPGPVLERLLKAERSAFERYDGLRGYPGGVQEVALGLWTEAQEAVREYRAKHP*
JGIcombinedJ26739_1004085611	3300002245	Forest Soil	MAAPDPELERLLKAERLAFERYDGLRGYPGDVQEIALDLWTEAQEAVRAYRAKHP*
JGIcombinedJ26739_1004548371	3300002245	Forest Soil	LKAERLSFERYDRLRGYPGDVQEVALALWTEATEAVREYRAKHP*
JGIcombinedJ26739_1011041091	3300002245	Forest Soil	MVDPDPELEHLLKAERLAFNRYDGLRGYPGDVQEIALNLWTEAQEAVRSYRAKHP*
JGIcombinedJ26739_1015005332	3300002245	Forest Soil	DPDPKLEHLLKAERLAFERYDRLRGYPGDVQEVALALLTEATEAVRDYRAKHP*
JGI25617J43924_100569291	3300002914	Grasslands Soil	VTDPDPKLERLLKTERLASERYERMRGYPAEVQAAALALWMEAKEAVRVHRAKHP*
Ga0062389_1024965811	3300004092	Bog Forest Soil	MADDDPGLERLLAVERAALARCEELRGYPAAEQVAALALWTEATKAVRDYRAKHP*
Ga0070708_1008507181	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAAPDPELERLLKAERLAFERYDRLRGYPGNVQEVALALWTEATEAVRDYRSKHP*
Ga0070706_1011651431	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LERLLKAERLAFDRYDRLRGYPGDVQEVALALWTEATEAVREYRTKHP*
Ga0070707_1020216992	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKQP*
Ga0070697_1009029821	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAAPDPELERLLKAERLAFDRYDRLRGYPGDVQEVALALWTEATEAVR
Ga0066703_102240542	3300005568	Soil	MANRDRELERLLKAERLAFERYDRLRGYPGDVQEAALALWTEATEAVRAHRAKYP*
Ga0070763_100145283	3300005610	Soil	MTAPDPKLERLLKAERLAFARYDRLRGYPANVQGPALALWTEATEAVREYRSKHS*
Ga0070763_105402252	3300005610	Soil	VADPDPKLERLLKAERLASERYERLRGYPAEFQAAALALRSEAREAVRKYRAKHP*
Ga0075018_107229212	3300006172	Watersheds	MATPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRSKHP*
Ga0070765_1014412612	3300006176	Soil	MALPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAAHP*
Ga0070765_1023097331	3300006176	Soil	MAAPDPELERLLKAERFAFARYNRLRGYPGDVQEEALALWTEATEAVRDYRAKHP*
Ga0099794_102103172	3300007265	Vadose Zone Soil	MTAPDPKLECLLKAERLAFARYDRLRGYPGDVQEVAIALWTEATEAVRDYRSKHP*
Ga0099795_103234911	3300007788	Vadose Zone Soil	MAAPDPTLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAAREYRSKHP*
Ga0099792_107785782	3300009143	Vadose Zone Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEAALALWTEATE
Ga0126350_122942372	3300010880	Boreal Forest Soil	MAAPDPELVRLLKTERFAFERYDRLRGYPGDVQVPALALWTKATGAVRDYRSKPLKGGAKQ*
Ga0137393_105378381	3300011271	Vadose Zone Soil	MTARDPKLERLLKAERLAFERYERLRGYPADVQEVALALWTEATEAVRDYRSKHP*
Ga0137383_104848943	3300012199	Vadose Zone Soil	MAAADPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEA
Ga0137363_105077612	3300012202	Vadose Zone Soil	MWCMAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0137372_110988052	3300012350	Vadose Zone Soil	ELERLLKAERLAFEHYDRLGGYPGGVQEVALALWTEATEAVREYRSKHP*
Ga0137361_115029962	3300012362	Vadose Zone Soil	MAAADPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRSKLP*
Ga0137390_101655011	3300012363	Vadose Zone Soil	YSLSVADSDPELERLLKAERLAFERYDRLRGYPADVQGPALALWTEATEAVREYRSKHP*
Ga0137390_104969502	3300012363	Vadose Zone Soil	MADPDPKLERLLKTERLASERYERLRGYPAEVQAAALAVWMEAKEAVRVHHAKHP*
Ga0137398_103276371	3300012683	Vadose Zone Soil	MADRDPELERLLKAERLAFERYDRLRGFPPDVQAAALSFLTEARETVRAYRAKHP*
Ga0137413_103463712	3300012924	Vadose Zone Soil	MAAVDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHPSGALVRG*
Ga0137419_105080452	3300012925	Vadose Zone Soil	MAAPDPKLEHLLKAERLALERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHPSGALVRG*
Ga0137404_100659982	3300012929	Vadose Zone Soil	MAAADPELERLLKAERLASERYERLRGYPGNVQEVALALKTEATEAVREYRSKHP*
Ga0137404_116707622	3300012929	Vadose Zone Soil	MAAPDPEIERLLKAERLAFERYDGLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0137407_121573511	3300012930	Vadose Zone Soil	MCCMAAADPKLERLLKAERLAFERCDRLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0137410_100975811	3300012944	Vadose Zone Soil	MADRDPELERMLKVERLASERYERLRGYPGEVQAVALASLLEAREVVREYRSKHP*
Ga0137410_111696782	3300012944	Vadose Zone Soil	MAAPDPELERLLKAERLAFERYDRLRGYRGDVQEVALALWTEATEAVRDYRAKHP*
Ga0137410_116167822	3300012944	Vadose Zone Soil	MAAPDPTLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAV
Ga0137411_13835636	3300015052	Vadose Zone Soil	MSTTVLHGRRDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0167643_10163643	3300015089	Glacier Forefield Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGNVQEVALALWTEATEAVRGYRAKHP*
Ga0137418_105928462	3300015241	Vadose Zone Soil	GRLPPEDVHQDLELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHPSGALVRG*
Ga0137412_100470195	3300015242	Vadose Zone Soil	MAAVDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAKHP*
Ga0137409_101802242	3300015245	Vadose Zone Soil	MADRDPELEHLLKVERLASERYERLRGYPGETQAVALASLLEAREVVREYRSKHP*
Ga0137409_105417102	3300015245	Vadose Zone Soil	MGEGDSELERLLRAERLAFERYERLRGYPANVQAAALALRIEATEAVREYRSKHL*
Ga0137409_107376162	3300015245	Vadose Zone Soil	MAAADPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0137403_100483616	3300015264	Vadose Zone Soil	MAAAGPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP*
Ga0193722_10052467	3300019877	Soil	MADRDPELEHLLKAERLAFERYDGLRGYPGDVQEAALALWTEATEVVRDYRAKHP
Ga0193747_10291192	3300019885	Soil	MAAPDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0193729_10084042	3300019887	Soil	MAAPNPKLERLLKAEREAFERYDRLRGYPGNVQEVALALWTEATKAVRDYRAKHP
Ga0193729_10116747	3300019887	Soil	MAAADPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0193729_10247933	3300019887	Soil	LKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAKHP
Ga0193743_10093664	3300019889	Soil	MADRDPELEHLLKVERLASERYERLRGYPGEVQAVALASLLEAREVVREYRSKHP
Ga0193743_10440592	3300019889	Soil	MADRDPELERLLKVEGQAFERYDRPRGYPGDVQDVALALWTEAQEAVGDYRSKHSRG
Ga0193743_10456124	3300019889	Soil	LKAERLAFDRYDRLRGYPGDVQEVALALWTEATEAVRAYRAKHP
Ga0193743_11464441	3300019889	Soil	MADGDPELERLLKAERLAVERYDRLRGYPGGVQEVALTLWTEAAEAVREYRSKHP
Ga0193743_11479971	3300019889	Soil	MAAADLKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRTKHP
Ga0193726_10827281	3300020021	Soil	ADRDPELEHLLKAERLAFERYDGLRGYPGDVQEIALGLWTEAQEAVREYRAKHP
Ga0193726_11302063	3300020021	Soil	MADDDPELERLLKAERETRDRYEQLRGYPAAEQVAALALWTEATEAVRDYRAKHP
Ga0193726_12457842	3300020021	Soil	MADRDPELERLLKVERLASERYDRLRGYPGEVQAVALASLLEASEVVREYRSKHP
Ga0193753_100763643	3300020034	Soil	MGEQDRELERMLKAERLAFERYEQLRGYPGDVQEAALALWTEAAAVVRAYRAKHS
Ga0193753_100914334	3300020034	Soil	SCICFEMADRDPELEHLLKAERLAFERYDGLRGYPGDIQEAALALWTEATEVVRDYRAKH
Ga0193753_101151102	3300020034	Soil	MADRDPELEHLLKAERFAFERYDGLRGYPGDVQEEALALWTEAAEVVRAYRAKHP
Ga0193753_101697141	3300020034	Soil	DPELERLLKAERLAFNRYDGLRGYPGDVQEIALDLWTEAQDAVRAYRAKHP
Ga0193753_102755733	3300020034	Soil	MAAPDPELERLLKAERLAFERYDGLRGYPGDAQEVALALWTEATEAVRKYRSKHP
Ga0193753_103917841	3300020034	Soil	MVRFVYTGMADRDPELEHLLKVEHLASERYERLRGYPGEVQAVALASLLQARGVVREYRAKHP
Ga0193716_11887092	3300020061	Soil	MAAPDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAKHPSFV
Ga0193724_10149984	3300020062	Soil	MATPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0179590_12223661	3300020140	Vadose Zone Soil	MADRDPELERLLKAERLAFERYDRLRGFPPDVQAAALSFLTEARETVRAYRAKHP
Ga0210401_104465452	3300020583	Soil	AAKSSLVYYCFMDDRDHELARLLKAERVAFKRYDRLRGYPGNVQEVALALWTEATKALREYRSKHSQAERG
Ga0210388_102488224	3300021181	Soil	APDPELERLLKAERLAFERYDRLRGYPGNVQEVALALWTEATEAVRDYRSKHR
Ga0210388_108949711	3300021181	Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGNVQEVALALWTEATEAVRDYR
Ga0193699_104138222	3300021363	Soil	MVDQDLELERLLKAEHSAFERYERLRGYLADVQGAALALWTEATEAVREYRSKHS
Ga0210387_103948651	3300021405	Soil	MALPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAAHP
Ga0210387_107424981	3300021405	Soil	MVDRDPKLERLLKVERLASERYERLRGYPGEVQAVALASLLKAREAVRKYRSKHP
Ga0210387_115452512	3300021405	Soil	LLKAERLAFERYDRLRGYPGDVQEAALALWTEATEAVRDYRAAHP
Ga0193709_10745202	3300021411	Soil	MAAPDPKLERLLKAERLAFERYDGLRGYPGDVQEAALALWTEATEAVRDTAQSIRRAL
Ga0193709_10908123	3300021411	Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVR
Ga0210384_104019231	3300021432	Soil	VYSLSVADPDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRSKHP
Ga0210392_113887311	3300021475	Soil	MATPDPELERLLKAERLAFERYDRLRGYPGDVQEAALALWTEATEAVRDYRAAHP
Ga0210402_103774062	3300021478	Soil	MAAPDPTLERLLKAERLASERCERLRGYPGEVQAVALASLLKAREAVREYRSKHP
Ga0210409_109499201	3300021559	Soil	FMDDRDHELARLLKAERVAFKRYDRLRGYPGNVQEVALALWTEVTKALREYRSKHSQAER
Ga0222622_106593773	3300022756	Groundwater Sediment	MAAPDPELERLLKAERLAFERYDRLRGNPGDVQDVALAIWTEAQEAVRDYRAKHP
Ga0179589_101667061	3300024288	Vadose Zone Soil	MATPDPELERLLKAERLAFERYDRLRSYPGDVQEVALALWTEATEAVREYRSKHP
Ga0208479_10388281	3300025474	Arctic Peat Soil	MAAPDPELKRLLKAERFAFKRYDRLRGYPGDVQAVALASWTEATEAVRDHRPKRIPLRRRGGPPP
Ga0207646_112344791	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKQP
Ga0179593_10992564	3300026555	Vadose Zone Soil	MVAPGAELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0179587_101232582	3300026557	Vadose Zone Soil	MADRDPELERLLKVERLASERYERLRGYPGEAQAVALASLLEAREVVREYRSKHP
Ga0208994_10764121	3300027164	Forest Soil	MTAPDPELERLLKAERLAFERYDGLRGYPGDVQEVALALWTEATEAVRGYRAKHP
Ga0208985_10146641	3300027528	Forest Soil	MATPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAAHP
Ga0209106_10224583	3300027616	Forest Soil	VLERLLKAERSAFERYDGLRGYPGGVQEVALGLWTEAQEAVREYRAKHP
Ga0208990_10997002	3300027663	Forest Soil	WRPPSTMRGRSFRRFRPGPVLERLLKAERSAFERYDGLRGYPGGVQEVALGLWTEAQEAVREYRAKHP
Ga0208981_10128511	3300027669	Forest Soil	MADRDPELERLLKVERLASERYERLRGYPGEAQAVALASLLEAREVVREYRSRHP
Ga0209011_10287304	3300027678	Forest Soil	MTAPDPKLERLLKAERLAFERYERLRGYPADVQGAALALWTEATEAVREYRSKHP
Ga0209693_100261181	3300027855	Soil	VYLPCVADPDPKLERLLKAERLASERYERLRGYPAEFQAAALALRSEAREAVRKYRAKHP
Ga0209169_102247261	3300027879	Soil	MAGNDPELERLLTVERAAFERCEELRGYPGAEQEAALALWTEATKAVRDYRSRHP
Ga0209624_103413092	3300027895	Forest Soil	MAAPDPELVRLLKTERFAFERYDRLRGYPGDVQVPALALWTKATGAVRDYRSKPLKRGAK
Ga0209624_107970441	3300027895	Forest Soil	MAEDDSALQRLLAVERAALRRCEELRGYPASEQEVALALWTEATKAVRDYRAKHP
Ga0209006_104575262	3300027908	Forest Soil	FERYDRLRGYPGDVQEVALALWTEATEAVRDYRAAHP
Ga0209526_101621932	3300028047	Forest Soil	MVDPDPELEHLLKAERLAFNRYDGLRGYPGDVQEIALNLWTEAQEAVRSYRAKHP
Ga0209526_104567764	3300028047	Forest Soil	MAAPDPELERLLKAERFAFARYNRLRGYPGDVQEEALALWTEATEAVRDYRAKHP
Ga0209526_105455582	3300028047	Forest Soil	ELERLLKAERLAFERYDGLRGYPGDVQEIALDLWTEAQEAVRAYRAKHP
Ga0209526_106909112	3300028047	Forest Soil	MTAPDPKLERLLKAERLAFARYDRLRGYPGNVQEVALALWTEATEAVRDYRSKHP
Ga0307282_104482731	3300028784	Soil	LAFGRYERFRGYPADVQEAALALWTEAAEAVRDYRSKHP
Ga0307296_101683741	3300028819	Soil	MAAADPKLERLLKAERLAFERYDRLRGYPGDVQEVALAFWTEATEAVREYRSKHP
Ga0307312_105463662	3300028828	Soil	MAAPDPELERLLKAERLAFERYDGLRGYPGDVQEVALALWTEATEAVRDYRAKHP
Ga0308309_100096636	3300028906	Soil	MTAPDPKLERLLKAERLAFARYDRLRGYPANVQGPALALWTEATEAVREYRSKHS
Ga0075403_115584642	3300030846	Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0075386_120214571	3300030916	Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVREY
Ga0170834_1044135761	3300031057	Forest Soil	MAAPDPELERLLKAERFAFERYNRLRGYPGDVQEVALALWTEATEAVREYRSKHP
Ga0170824_1186116281	3300031231	Forest Soil	MAAPDPELERLLKAERFAFERYDRLRGYPGDVQEVALALWTEATEAVREYRAKHP
Ga0170824_1228236154	3300031231	Forest Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDIQEVALALWTEATEAVRDYRSKHP
Ga0170820_146846602	3300031446	Forest Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRSKHP
Ga0170820_159132382	3300031446	Forest Soil	MTAPDPKLERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAKHP
Ga0170819_103408172	3300031469	Forest Soil	MAAPDPELERLLKAERLAFERYDRLRGYPGDIQEVALALWTEATEAVRAYRAKHP
Ga0170818_1005685041	3300031474	Forest Soil	MRCMAAPDPELERLLKAERFAFERYDRLRGYPGDVQEVALALWTEATEAVREYRAKHP
Ga0170818_1022145211	3300031474	Forest Soil	LKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRSKHP
Ga0170818_1150985531	3300031474	Forest Soil	ELERLLKAERLAFERYDRLRGYPGDVQEVALALWTEATEAVRDYRAKHP
Ga0170818_1153426092	3300031474	Forest Soil	MADQDDPELESLLKAERVAFERYNRFGGYQAEVQNVALALWTDAQEAVRTWRTKHSL
Ga0370501_0201667_517_684	3300034195	Untreated Peat Soil	MAANDPGLKRLMAAERAAFKRCEELRGYPASEQVAALALWTEATKAVRDYRAKHS
Ga0372946_0500393_2_184	3300034384	Soil	AVHFAASSRDPVLERLLKAERSAFERYDGLRGYPGGVQEVALGLWTEAQEAVREYRAKHP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073954

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences