Metagenome / Metatranscriptome Family F073915

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073915
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	44 residues
Representative Sequence	MDESKRRVVKFLEKEIKTYTALSLFLSKKGIKEHVRVGEKKV
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.36 %
% of genes near scaffold ends (potentially truncated)	88.33 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.86% β-sheet: 0.00% Coil/Unstructured: 47.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF11752	DUF3309	62.50
PF00072	Response_reg	2.50
PF13502	AsmA_2	1.67
PF04972	BON	1.67
PF00027	cNMP_binding	0.83
PF00496	SBP_bac_5	0.83
PF14067	LssY_C	0.83
PF00882	Zn_dep_PLPC	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.17 %
Unclassified	root	N/A	25.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.17 %
Unclassified	root	N/A	25.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.17 %
Unclassified	root	N/A	25.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.67 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.50 %
Unclassified	root	N/A	25.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.50 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	2.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.50 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	2.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	2.50 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.67 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	2.50 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	1.67 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	25.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	2.50 %
Granulicella sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp.	0.83 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.83 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS01BINUM	Not Available	503	Open in IMG/M
3300000571\|JGI1358J11329_10200764	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300001356\|JGI12269J14319_10123256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1189	Open in IMG/M
3300001593\|JGI12635J15846_10217418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1250	Open in IMG/M
3300002677\|Ga0005475J37263_110315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300003368\|JGI26340J50214_10063107	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300004135\|Ga0058884_1008128	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300004140\|Ga0058894_1486393	All Organisms → cellular organisms → Bacteria → Proteobacteria	1088	Open in IMG/M
3300004964\|Ga0072331_1160379	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005180\|Ga0066685_10419273	Not Available	930	Open in IMG/M
3300005440\|Ga0070705_101777031	Not Available	522	Open in IMG/M
3300005471\|Ga0070698_100481487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300006059\|Ga0075017_101094773	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300006173\|Ga0070716_100927864	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300006173\|Ga0070716_101684173	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300006354\|Ga0075021_11096607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300006804\|Ga0079221_10175752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1148	Open in IMG/M
3300006806\|Ga0079220_10875452	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300006914\|Ga0075436_100789967	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300006954\|Ga0079219_10569763	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006954\|Ga0079219_11736141	Not Available	580	Open in IMG/M
3300007265\|Ga0099794_10691734	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009521\|Ga0116222_1495983	Not Available	534	Open in IMG/M
3300009524\|Ga0116225_1113279	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300010341\|Ga0074045_11012193	Not Available	522	Open in IMG/M
3300010379\|Ga0136449_101034401	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300010401\|Ga0134121_12386990	Not Available	569	Open in IMG/M
3300011120\|Ga0150983_10190768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300011120\|Ga0150983_10219648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082	Open in IMG/M
3300011120\|Ga0150983_14626082	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300011120\|Ga0150983_15855259	Not Available	547	Open in IMG/M
3300011120\|Ga0150983_16532060	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300011271\|Ga0137393_11359840	Not Available	599	Open in IMG/M
3300012096\|Ga0137389_10637699	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300012096\|Ga0137389_11633769	Not Available	540	Open in IMG/M
3300012205\|Ga0137362_11783534	Not Available	502	Open in IMG/M
3300012208\|Ga0137376_10399020	Not Available	1194	Open in IMG/M
3300012882\|Ga0157304_1026667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300012923\|Ga0137359_10731625	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300012923\|Ga0137359_11647109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300012929\|Ga0137404_11389539	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012984\|Ga0164309_11105232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	660	Open in IMG/M
3300012984\|Ga0164309_11246180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300012985\|Ga0164308_12162689	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300014168\|Ga0181534_10499957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300014501\|Ga0182024_12077248	Not Available	626	Open in IMG/M
3300015054\|Ga0137420_1225687	All Organisms → cellular organisms → Bacteria	4801	Open in IMG/M
3300017822\|Ga0187802_10389340	Not Available	551	Open in IMG/M
3300017823\|Ga0187818_10212687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300017928\|Ga0187806_1083510	Not Available	1004	Open in IMG/M
3300017930\|Ga0187825_10218114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300017937\|Ga0187809_10070077	Not Available	1148	Open in IMG/M
3300017942\|Ga0187808_10036864	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300017943\|Ga0187819_10211687	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300018018\|Ga0187886_1257960	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300020580\|Ga0210403_10051170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3303	Open in IMG/M
3300020580\|Ga0210403_10203784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1624	Open in IMG/M
3300020580\|Ga0210403_10435295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1069	Open in IMG/M
3300020580\|Ga0210403_10574114	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300020580\|Ga0210403_10966307	Not Available	668	Open in IMG/M
3300020582\|Ga0210395_10918716	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300021170\|Ga0210400_10324129	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1266	Open in IMG/M
3300021171\|Ga0210405_10809358	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300021401\|Ga0210393_10374602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1160	Open in IMG/M
3300021403\|Ga0210397_10499890	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300021406\|Ga0210386_10330830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1308	Open in IMG/M
3300021432\|Ga0210384_10748204	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300021432\|Ga0210384_11804134	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300021433\|Ga0210391_10468287	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300021478\|Ga0210402_10542684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300021479\|Ga0210410_10583564	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300021479\|Ga0210410_10795209	Not Available	831	Open in IMG/M
3300022731\|Ga0224563_1015140	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300024286\|Ga0247687_1074139	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300025442\|Ga0208034_1059655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300025480\|Ga0208688_1012558	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300025527\|Ga0208714_1094195	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300025905\|Ga0207685_10613133	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300025916\|Ga0207663_10418852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300025916\|Ga0207663_10586430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300025922\|Ga0207646_11413360	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300025922\|Ga0207646_11775541	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300026304\|Ga0209240_1000022	All Organisms → cellular organisms → Bacteria → Acidobacteria	57289	Open in IMG/M
3300026489\|Ga0257160_1024541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	969	Open in IMG/M
3300027678\|Ga0209011_1059609	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300027911\|Ga0209698_10328512	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300028792\|Ga0307504_10286310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300029636\|Ga0222749_10751996	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031231\|Ga0170824_119783478	Not Available	500	Open in IMG/M
3300031524\|Ga0302320_11289283	Not Available	739	Open in IMG/M
3300031715\|Ga0307476_10265369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1255	Open in IMG/M
3300031715\|Ga0307476_10764982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300031720\|Ga0307469_12498383	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031753\|Ga0307477_10146624	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1646	Open in IMG/M
3300031754\|Ga0307475_10081524	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300031820\|Ga0307473_10096001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1564	Open in IMG/M
3300031823\|Ga0307478_11411489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300032174\|Ga0307470_10542499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300032174\|Ga0307470_10798396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	731	Open in IMG/M
3300032180\|Ga0307471_100069711	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3025	Open in IMG/M
3300032180\|Ga0307471_100118992	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300032180\|Ga0307471_101984686	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300032180\|Ga0307471_103154037	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300032180\|Ga0307471_103809986	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300032205\|Ga0307472_102726328	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300032756\|Ga0315742_10063147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1695	Open in IMG/M
3300032756\|Ga0315742_10711707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300033405\|Ga0326727_10673027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300033433\|Ga0326726_11271451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp.	716	Open in IMG/M
3300033561\|Ga0371490_1113462	Not Available	704	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.50%
Host-Associated	Host-Associated	2.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	14.17%
Plants	Host-Associated → Plants	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Freshwater	Environmental → Aquatic → Freshwater	11.67%
Peat	Environmental → Terrestrial → Peat	3.33%
Sediment	Environmental → Aquatic → Sediment	2.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	17.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002677	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004137	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004140	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF224 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004964	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_08739110	2170459012	Grass Soil	MDESRRRVVRFLEKEIKTYTALSLFLSKKGIKGHVRVEE
JGI1358J11329_102007641	3300000571	Groundwater	MDEARRRVIKFLEKEIKTYAALALFLSKKGSKESVRVANKEIILSP
JGI12269J14319_101232561	3300001356	Peatlands Soil	MDQSRRRIVNFLEKEIKTYTALSLFLSKKGIQEQLRV
JGI12635J15846_102174181	3300001593	Forest Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADVRVGEKKVLXSPSY
Ga0005475J37263_1103153	3300002677	Forest Soil	MEDSRRRVVKFLEKEIKTYTALSLFLSKKGIKEHVRVGAKRVLISP
JGI26340J50214_100631071	3300003368	Bog Forest Soil	MDESKRRIVRFLEREIKTYMALSYFLTKKGIKEHLRVGEKRVLISPSF
Ga0058884_10081284	3300004135	Forest Soil	MDDSRRRVVKFLEKEIKTYRALSLFLLKKGIKERVRVGEKKVLI
Ga0058883_10073401	3300004137	Forest Soil	MNDSKQRVVRFLEKEIKTYVALSLFLSKKGIRERMDAGDKR
Ga0058894_14863931	3300004140	Forest Soil	MEDSRRRVVRFLEKEIKTYTALSLFLSKKGIKEHVRVGAKRVLISPSFY
Ga0072331_11603791	3300004964	Peatlands Soil	MDQSRRRIVNFLEKEIKTYTALSLFLSKKGIQEQLRVGGKQALVSP
Ga0066685_104192731	3300005180	Soil	MDESKKHVVKFLEKEIKTYMALSLFLSKKGIQEHVRVGEKKVLIG
Ga0070705_1017770312	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPKRRAVKFLEKEIRTYKALSLFFSKKGIKEHVRFGEKKVLISPTFY
Ga0070698_1004814871	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPKRRAVKFLEKEIRTYKALSLFFSKKGIKEHVRFGEKKVLISPTFYE
Ga0080027_102011221	3300005993	Prmafrost Soil	MDKSSRRVIQFLEKEIKTYAPFSLFLMKKGINERVRVGDKR
Ga0075017_1010947731	3300006059	Watersheds	MSETRRHVVKFLEKEIKTYRALCLFFSKTGKKGHL
Ga0070716_1009278643	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDDSKRNAVKFLEKEIQTYMALSLFLAKRGIDEHVCIGDRKILISPTFYKER
Ga0070716_1016841732	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKRSAVKFLEKESKTYLALSLFLSKKGIEEHVRVGDNKILINPTFYKE
Ga0075021_110966071	3300006354	Watersheds	MDESKRHAVQFLEKEIKTYTALSLFLTKKGIKEHIRVGEKSVLISSSFY
Ga0079221_101757524	3300006804	Agricultural Soil	MDESKRRVVKFLEKEIKTYKALSLFLSKKGFQEHVRLGKKQVLISP
Ga0079220_108754521	3300006806	Agricultural Soil	MDESKRRVVKFLEKEIKTYKALSLFLSKKGIQEHVRLGKKKVLIS
Ga0075436_1007899671	3300006914	Populus Rhizosphere	MSDPKRRAVKFLEKEIRTYKALSLFFSKKGIKEHVRFGEKKV
Ga0079219_105697631	3300006954	Agricultural Soil	MDESKRRVVKFLEKEIKTYKALSLFLSKKGIKEHVRLGAKKVLISP
Ga0079219_117361412	3300006954	Agricultural Soil	MDESKRRAVRFLEKEIKTYKALALFLSKEEIKKHMPLND
Ga0099794_106917342	3300007265	Vadose Zone Soil	LEDNVDESKRWAVRFLEKEIKTYMALSLFLSKKGIK
Ga0116222_14959832	3300009521	Peatlands Soil	MDESKRRAIQFLEKEIKTYLALALFLSKKDVQKHLRAGSKG
Ga0116225_11132793	3300009524	Peatlands Soil	MDQSRRRIVNFLEKEIKTYTALSLFLSKKGIQEQLRVGGKQALVSPAFYKE
Ga0074045_110121931	3300010341	Bog Forest Soil	MDESKRHAIRFLEKEIRTYTALSLFLSKQGIRQHVRVGTSTVLICPLFYRE
Ga0136449_1010344013	3300010379	Peatlands Soil	MDESKRHVVEFLEKEIKTYLALSLFLSKKGIKEHVRVG
Ga0134121_123869902	3300010401	Terrestrial Soil	MDQSKQRAIHFLEKEIKTYTALALFFSKKGIKEPVK
Ga0150983_101907682	3300011120	Forest Soil	MDESKRRVVKFLEKEIKTYKALSLFLSKKGIKELVRVGEKKVHISPSF
Ga0150983_102196481	3300011120	Forest Soil	MDESKRRAVKFLQKEIKTYLALSLFLSKKGIKEHLRA
Ga0150983_146260821	3300011120	Forest Soil	MEDYKRRVARFLHKEIKTYTALSLFLSKKDARDHLRLGVEAIL
Ga0150983_158552593	3300011120	Forest Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKSIRQHLRVGEKKVLG
Ga0150983_165320601	3300011120	Forest Soil	MDESKRRVVRFLEKEIKTYMALSLFLSKKGIKGHVRVGER
Ga0137393_113598401	3300011271	Vadose Zone Soil	MDESTRRVVKFLEKEIKTYTALSLFLSKKGIKEHVRVGEKKVLISPSFYKER
Ga0137389_106376993	3300012096	Vadose Zone Soil	MDESTRRVVKFLEKEIKTYTALSLFLSKKGIKEHVRVGEKKVLISP
Ga0137389_116337692	3300012096	Vadose Zone Soil	MDESRRHAIKFLEKEIKTYLALSLFLSKKGIKEHVRVG
Ga0137362_117835341	3300012205	Vadose Zone Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADVRVGEKKVLISP
Ga0137376_103990202	3300012208	Vadose Zone Soil	MDESKRRAVRFLEKEIKTYMALSLFLSKKGIKEHARMEKKKILISPSI*
Ga0157304_10266671	3300012882	Soil	MEADWRSAMDDSKRSAVKFLEKEIKTYMALSLFLAKRGIDEHVCVGDKKI
Ga0137359_107316254	3300012923	Vadose Zone Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADV
Ga0137359_116471092	3300012923	Vadose Zone Soil	MDESKRRVIKFLEKEIKTYKALALFLSKKGIKEHVRVGE
Ga0137404_113895391	3300012929	Vadose Zone Soil	MDDSRRRAIQFLEKEIKTYLALSLFLSKKGIKADVRLEAKKVIIS
Ga0164309_111052321	3300012984	Soil	MEESVRRVIQFLEKEIKTYGALSLFLSKKGIREHLRVGDNRVL
Ga0164309_112461801	3300012984	Soil	VVRRIAMDESKRMAVKFLEKEIKTYLALSLFLSRKDAREHV
Ga0164308_121626891	3300012985	Soil	VVRRIAMDESKRMAVKFLEKEIKTYLALSLFLSRKDAREHVRIG
Ga0181534_104999571	3300014168	Bog	MDVARRGVVRFLEKETKTYAALSLFLSKKGIKEHLRTGTKA
Ga0182024_120772481	3300014501	Permafrost	MDDSKRHVVQFLEKEIKTYKALARFLAKKGIEEHVRIGSKRILISPAFYKDR
Ga0137420_12256871	3300015054	Vadose Zone Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADVRVGEKKVLISPSYYKEPR
Ga0187802_103893401	3300017822	Freshwater Sediment	MSEWKRSVVKFLEKEIKTYMALSLFLSKKGIKEHVRV
Ga0187818_102126871	3300017823	Freshwater Sediment	MDESKRRVVKFLEKEIKTYMALSLFLSKKGIKEHVRVGEKKVLISPTF
Ga0187806_10835102	3300017928	Freshwater Sediment	MDQSKRRAVEFLEKEIKTYTALSLFLWKQGIRQHVRVGTTTVLLCYLFYKER
Ga0187825_102181141	3300017930	Freshwater Sediment	MDESKRHAVKFLEKEIKTYTALSLFLWKQGIRQHVRVGTTTVLLCYL
Ga0187809_100700772	3300017937	Freshwater Sediment	MDQSKRRAVEFLEKEIKTYTALSLFLWKQGIRQHVRVG
Ga0187808_100368641	3300017942	Freshwater Sediment	MDESKRHAVKFLEKEIKTYTALSLFLSKQGIRQHVRVGTTTVL
Ga0187819_102116871	3300017943	Freshwater Sediment	MSESKRRMVKFLEKEIKTYKALSLFLSKKDIKEHIRKEQQKVPISPT
Ga0187886_12579601	3300018018	Peatland	MNQSKRRVVKFLEKEIKTYMALSLFLTKKGIKEHLRVGEKKVLISPTFYKER
Ga0187859_100544321	3300018047	Peatland	MDKSSRRVIQFLEKEIKTYAALSLFFMKKGINERG
Ga0210403_100511701	3300020580	Soil	MDESKRRAVKFLEKEIKTYKALSLFLSKKGVKEHLG
Ga0210403_102037844	3300020580	Soil	MDESKRHAFKFLEKEIKTYAALSLFLSKQGIRQRVRMGASTVLICPLFY
Ga0210403_104352953	3300020580	Soil	MGTSRRSVVRFIEKEIKTYMALSLFLSKKGIKEHARPGEENLVGPSF
Ga0210403_105741141	3300020580	Soil	MEESKRRAVRFLEKEIKTYTALSLFLSKKGIKEHVRVGEKRVLISPS
Ga0210403_109663071	3300020580	Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKEHVRVGEKRVLIGP
Ga0210395_109187161	3300020582	Soil	MDESMQRAIKFLEKEIKTYMALSLFLSKKGIKADVRLGQKKVLVSSAYYKER
Ga0210400_103241293	3300021170	Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKEHVRVGEKKVLISP
Ga0210405_105167033	3300021171	Soil	MSTSRRRVVRFIEKEIKTYMALSRFLSKKGTTEHVREGEEKVLA
Ga0210405_108093583	3300021171	Soil	MDESMQRAIKFLEKEIKTYTALSLFLSKKGIKADVRLGQKKVLISPAY
Ga0210388_105640592	3300021181	Soil	MDKSSRRVVQFLEKEIKTYAALSLFFMKKGLNERGRVG
Ga0210393_103746021	3300021401	Soil	MDQSKRRAVKFLEKEIKTYTALSLFLSKQGIRQHVRVGATTV
Ga0210397_104998901	3300021403	Soil	MDDSKRHAIQFLEKEIKTYTALSLFLTKKGIKEHVLVGEK
Ga0210386_103308303	3300021406	Soil	MDESKRRAVKFLEKEIKTYAALSLFLSNKGMKQQVRVGTSTVLLS
Ga0210384_100037441	3300021432	Soil	MNDSKQRVAKFLEKEIKTYAALSLFLSKKGISESLN
Ga0210384_107482043	3300021432	Soil	MNDSNRRVVRFLQKEIKTYTALSLFLTRKGTKQHVHLSATV
Ga0210384_118041341	3300021432	Soil	MDESRRRAVRFLEKEIKTYMALSRFLSKKGIKEHVRLGDKTVLICPSF
Ga0210391_104682871	3300021433	Soil	MHDSRQRAVRFLEKEIKTYTALSLFLSKKGVREQLRA
Ga0210390_104696101	3300021474	Soil	MDKSSRRVVQFLEKEIKTYAALSLFFMKKGLNERGRV
Ga0210402_105426841	3300021478	Soil	MEDPKRRVVKFLEKEIKTYTALSLFLSKKGFKEHVRVGAKRVL
Ga0210410_105835642	3300021479	Soil	AMDESKRRVVKFLEKEINTYRALSLFLSKKGIKEHVQVGEKKVLLSPSFIKSE
Ga0210410_107952091	3300021479	Soil	MHDAKQQAVRFLEKEIKTYTALSLFLSKKGGSKHPSA
Ga0224563_10151401	3300022731	Soil	MHDSKQQVVRFLEKEIKTYTALSLFLSKKGIRAHQRAGANK
Ga0247687_10741392	3300024286	Soil	MDDSKRSAVKFLEKEIKTYMALSLFLAKKGIDEHVCVGDKKILISPTFYKERM
Ga0208034_10596551	3300025442	Peatland	LDESKRRVIQFLEKEIKTYTALALFLSKKGIKERMRVGGKEI
Ga0208688_10125585	3300025480	Peatland	MDQSKRRIVKFLEKEIKTYMALSLFLSKKGIKEHLRVGENKVLISPTFYKE
Ga0208714_10941951	3300025527	Arctic Peat Soil	MDESKRHAVRFLEKEIKTYLALSLFFSKKDIKEHVRVGEKKVVINLAFY
Ga0207647_105730901	3300025904	Corn Rhizosphere	MDESSRRVIQFLEKEIKTYAALSLFLSKKGIREHLR
Ga0207685_106131331	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKRMAVKFLEKEIKTYLALSLFLSRKDAEEHVRIGGRKIL
Ga0207663_104188522	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKRRTVKFLEKEIKTYLALSLFLSKKGIKQHVRVGEKKVVISPSF
Ga0207663_105864303	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKRNAVKFLEKEIKTYLALSLFLSKKDLEQHVRV
Ga0207646_114133603	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKVSAVKFLEKEIKTYMALSLFLSKKGIDEHVRVG
Ga0207646_117755411	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDESKRSAVKFLEKEIKTYLALSLFLSRKGTEEHVRVG
Ga0207694_114328821	3300025924	Corn Rhizosphere	MDESSRRVIQFLEKEIKTYAALSLFLSKKGIREHLRV
Ga0209240_100002247	3300026304	Grasslands Soil	MDDSKRRAVTFLEKEIKTYAALSLFLSKKGIKEHMRVGEKRVLISPS
Ga0257160_10245413	3300026489	Soil	MDESKPSAAKFLEKEIKTYLALSLFLSKKGIEEHLRLATTKF
Ga0209011_10596091	3300027678	Forest Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADVRVGEKKVLISPSYYKE
Ga0209698_103285121	3300027911	Watersheds	LNESKRRVIQFLEKEIKTYTALALFLSKKGIKERIRVGGKE
Ga0307504_102863101	3300028792	Soil	MNESKRRVVKFLEKEIKTYTALSLFLSKKGIKDHVRIGEKRV
Ga0308309_105297641	3300028906	Soil	MDESSRRVIQFLEKEIKTYAALSLFLVKKGIKERVRVGNKR
Ga0222749_107519961	3300029636	Soil	MERSKQRVVIFLEKEIKTYLALSLFLSKKGIKEHARLEKKK
Ga0170824_1197834781	3300031231	Forest Soil	MDESKRHVVKFLEKEIKTYTALALFLSKKNIKEHVRV
Ga0302320_112892831	3300031524	Bog	MDDSKRHAVQFLEKEIKTYRALARFLAKKGIEEHVRIGSKRILISPAFYK
Ga0307476_102653691	3300031715	Hardwood Forest Soil	MDESKRRVVRFLEKEIKTYLALSLFLSKKGIKEHVRVGE
Ga0307476_107649822	3300031715	Hardwood Forest Soil	MDESKRRAVRFLEKEIKTYTALSLFLSKKGIKEPVRVGARKIVISPTFY
Ga0307469_124983831	3300031720	Hardwood Forest Soil	MDESKRSAVKFLEKEIKTYLALSLFLSKKGIEEHVGVGASKILISPTFYKE
Ga0307477_101466243	3300031753	Hardwood Forest Soil	MEDSVDESKRRAVRFLEKEIKTYTALSLFLSKKGIREHARTEKKKVLISPTFYK
Ga0307475_100815244	3300031754	Hardwood Forest Soil	MEDSKRRVVRFLEKEIKTYTALSLFLSKKGIREHVRV
Ga0307473_100960011	3300031820	Hardwood Forest Soil	MDESKRRVVKFLEKEIKTYTALSLFLSKKGIKEHARMEKKKILISPSF
Ga0307478_114114893	3300031823	Hardwood Forest Soil	MDESKRNAVKFLEKEIKTYLALSLFLSKKDIDEHVRVGARKILIG
Ga0307470_105424992	3300032174	Hardwood Forest Soil	MDNSKLSAVKFLEKEIKTYMALSLFLAKRGIDEHVCIGDKKILISPTFYKERM
Ga0307470_107983963	3300032174	Hardwood Forest Soil	MDESKRNAVKFLEKEIKTYLALSLFLSKKDIEQHVRV
Ga0307471_1000697114	3300032180	Hardwood Forest Soil	MDESKRRVVKFLEKEINTYMALSLFLSKNGIKERVRVGEKEVLISP
Ga0307471_1001189921	3300032180	Hardwood Forest Soil	MDESRRRAIKFLEKEIKTYLALSLFLSKKGIKADVRVGAKKVLISPSFYKE
Ga0307471_1019846862	3300032180	Hardwood Forest Soil	MDKSRQRAIKFLEKEIKTYLALSLFLSKKAIKEHVRVGEEKVLIS
Ga0307471_1031540373	3300032180	Hardwood Forest Soil	MDESKRRVVKFLEKEIKTYTALSLFLSKKGIKEHVRVGEKKV
Ga0307471_1038099861	3300032180	Hardwood Forest Soil	MNESKRRVVKFLEKEIKTYRALSLFLSKKGIKELV
Ga0307472_1027263281	3300032205	Hardwood Forest Soil	MDDSKRSAVKFLEKEIKTYMALSLFLAKRGIDEHVCVGDRKILISPT
Ga0315742_100631474	3300032756	Forest Soil	MHDSKQQVVRFLEKEIKTYTALSLFLSKKGVREQVQEKRLRSKVKERE
Ga0315742_107117073	3300032756	Forest Soil	MDESKRRAVRFLEKEIKTYAALSLFLSKKGIKEPLCVGARKIVIGP
Ga0326727_106730271	3300033405	Peat Soil	MVESKRRVVRFLEKEIKTYTALSLFLSKKGIHEHVRVGGEKILISPTFY
Ga0326726_112714513	3300033433	Peat Soil	MNQSKRRVVKFLEKEIKTYMALSLFLTKKGIKEHLR
Ga0371490_11134621	3300033561	Peat Soil	MRESKRRVVKFLEKEIKTYTALSLFLSKKGIKEQLHAGQKKVLISP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073915

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences