Metagenome / Metatranscriptome Family F073899

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	53 residues
Representative Sequence	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLK
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.87 %
% of genes near scaffold ends (potentially truncated)	71.67 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.833 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.500 % of family members)
Environment Ontology (ENVO)	Unclassified (47.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.39% β-sheet: 20.25% Coil/Unstructured: 68.35%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13414	TPR_11	2.50
PF13683	rve_3	1.67
PF13817	DDE_Tnp_IS66_C	0.83
PF01527	HTH_Tnp_1	0.83
PF08734	GYD	0.83
PF01266	DAO	0.83
PF10083	DUF2321	0.83
PF13358	DDE_3	0.83
PF01526	DDE_Tnp_Tn3	0.83
PF04909	Amidohydro_2	0.83
PF02417	Chromate_transp	0.83
PF10011	DUF2254	0.83
PF00872	Transposase_mut	0.83
PF02566	OsmC	0.83
PF13701	DDE_Tnp_1_4	0.83
PF09933	DUF2165	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF08546	ApbA_C	0.83
PF13432	TPR_16	0.83
PF04392	ABC_sub_bind	0.83
PF13091	PLDc_2	0.83
PF00072	Response_reg	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.83
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.83
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.83
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
All Organisms	root	All Organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
cellular organisms	root	All Organisms → cellular organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.17 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.83 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001160\|JGI12654J13325_1016764	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300002245\|JGIcombinedJ26739_101663758	Not Available	537	Open in IMG/M
3300003368\|JGI26340J50214_10074025	Not Available	901	Open in IMG/M
3300004080\|Ga0062385_10653806	Not Available	671	Open in IMG/M
3300004082\|Ga0062384_100048586	Not Available	2040	Open in IMG/M
3300004082\|Ga0062384_100802451	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300004092\|Ga0062389_100833281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1103	Open in IMG/M
3300005179\|Ga0066684_10060014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2215	Open in IMG/M
3300005435\|Ga0070714_100520181	Not Available	1136	Open in IMG/M
3300005467\|Ga0070706_101584832	Not Available	597	Open in IMG/M
3300005468\|Ga0070707_101629976	Not Available	612	Open in IMG/M
3300005536\|Ga0070697_100433660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300005549\|Ga0070704_101000348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300005559\|Ga0066700_10172444	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300005764\|Ga0066903_102168774	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300006028\|Ga0070717_10843180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300006173\|Ga0070716_101703279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300006175\|Ga0070712_101868944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300009137\|Ga0066709_103075795	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300009792\|Ga0126374_11493170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	554	Open in IMG/M
3300010343\|Ga0074044_10270793	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300010360\|Ga0126372_13079384	Not Available	517	Open in IMG/M
3300010361\|Ga0126378_10219488	Not Available	1984	Open in IMG/M
3300010361\|Ga0126378_10659398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300010361\|Ga0126378_11705179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300010361\|Ga0126378_12141892	Not Available	638	Open in IMG/M
3300010376\|Ga0126381_101499854	Not Available	974	Open in IMG/M
3300010376\|Ga0126381_101756729	Not Available	896	Open in IMG/M
3300010376\|Ga0126381_101939251	Not Available	849	Open in IMG/M
3300010398\|Ga0126383_11294047	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300010398\|Ga0126383_12694877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	580	Open in IMG/M
3300012198\|Ga0137364_10733814	Not Available	746	Open in IMG/M
3300012361\|Ga0137360_10268419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300012362\|Ga0137361_10070359	All Organisms → cellular organisms → Bacteria → Proteobacteria	2962	Open in IMG/M
3300012917\|Ga0137395_11169846	Not Available	540	Open in IMG/M
3300012923\|Ga0137359_10981472	Not Available	726	Open in IMG/M
3300016270\|Ga0182036_10956022	Not Available	704	Open in IMG/M
3300016294\|Ga0182041_10007127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6151	Open in IMG/M
3300016294\|Ga0182041_11251712	Not Available	678	Open in IMG/M
3300016319\|Ga0182033_10038417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3133	Open in IMG/M
3300016319\|Ga0182033_10640154	Not Available	927	Open in IMG/M
3300016371\|Ga0182034_10657164	Not Available	888	Open in IMG/M
3300016387\|Ga0182040_10060739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	2403	Open in IMG/M
3300016387\|Ga0182040_10632717	Not Available	869	Open in IMG/M
3300016422\|Ga0182039_10374027	Not Available	1202	Open in IMG/M
3300016445\|Ga0182038_10096886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2131	Open in IMG/M
3300020581\|Ga0210399_11366709	Not Available	555	Open in IMG/M
3300020583\|Ga0210401_11570028	Not Available	515	Open in IMG/M
3300021171\|Ga0210405_10469830	Not Available	987	Open in IMG/M
3300021178\|Ga0210408_10443318	Not Available	1034	Open in IMG/M
3300021178\|Ga0210408_10887056	Not Available	695	Open in IMG/M
3300021404\|Ga0210389_11123426	Not Available	607	Open in IMG/M
3300021406\|Ga0210386_11397132	Not Available	587	Open in IMG/M
3300021476\|Ga0187846_10136093	Not Available	1044	Open in IMG/M
3300021478\|Ga0210402_11220498	Not Available	679	Open in IMG/M
3300021478\|Ga0210402_11242426	Not Available	672	Open in IMG/M
3300021479\|Ga0210410_11263624	Not Available	630	Open in IMG/M
3300021559\|Ga0210409_11353259	Not Available	588	Open in IMG/M
3300021559\|Ga0210409_11359282	Not Available	586	Open in IMG/M
3300021560\|Ga0126371_10396172	Not Available	1522	Open in IMG/M
3300021560\|Ga0126371_13562475	Not Available	525	Open in IMG/M
3300022726\|Ga0242654_10300646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300025928\|Ga0207700_11178232	Not Available	684	Open in IMG/M
3300026498\|Ga0257156_1111345	Not Available	569	Open in IMG/M
3300027651\|Ga0209217_1013875	All Organisms → cellular organisms → Bacteria → Proteobacteria	2626	Open in IMG/M
3300027651\|Ga0209217_1036839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1516	Open in IMG/M
3300027651\|Ga0209217_1085101	Not Available	915	Open in IMG/M
3300027729\|Ga0209248_10047016	Not Available	1328	Open in IMG/M
3300028047\|Ga0209526_10152297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1619	Open in IMG/M
3300028047\|Ga0209526_10518666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300029636\|Ga0222749_10773219	Not Available	525	Open in IMG/M
3300031543\|Ga0318516_10070940	Not Available	1931	Open in IMG/M
3300031545\|Ga0318541_10248071	Not Available	989	Open in IMG/M
3300031545\|Ga0318541_10502889	Not Available	678	Open in IMG/M
3300031546\|Ga0318538_10023278	Not Available	2796	Open in IMG/M
3300031546\|Ga0318538_10451054	Not Available	696	Open in IMG/M
3300031561\|Ga0318528_10044564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2229	Open in IMG/M
3300031561\|Ga0318528_10584661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	599	Open in IMG/M
3300031564\|Ga0318573_10477694	Not Available	671	Open in IMG/M
3300031572\|Ga0318515_10492694	Not Available	654	Open in IMG/M
3300031668\|Ga0318542_10551553	Not Available	600	Open in IMG/M
3300031680\|Ga0318574_10183170	Not Available	1199	Open in IMG/M
3300031681\|Ga0318572_10118571	Not Available	1509	Open in IMG/M
3300031736\|Ga0318501_10252754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300031736\|Ga0318501_10524775	Not Available	647	Open in IMG/M
3300031747\|Ga0318502_10372302	Not Available	847	Open in IMG/M
3300031751\|Ga0318494_10369092	Not Available	831	Open in IMG/M
3300031768\|Ga0318509_10605093	Not Available	610	Open in IMG/M
3300031770\|Ga0318521_10296911	Not Available	950	Open in IMG/M
3300031771\|Ga0318546_10280585	Not Available	1150	Open in IMG/M
3300031782\|Ga0318552_10194674	Not Available	1025	Open in IMG/M
3300031795\|Ga0318557_10181490	Not Available	958	Open in IMG/M
3300031796\|Ga0318576_10523336	Not Available	559	Open in IMG/M
3300031819\|Ga0318568_10166655	Not Available	1352	Open in IMG/M
3300031832\|Ga0318499_10230159	Not Available	721	Open in IMG/M
3300031859\|Ga0318527_10408682	Not Available	579	Open in IMG/M
3300031879\|Ga0306919_10776436	Not Available	737	Open in IMG/M
3300031880\|Ga0318544_10392637	Not Available	539	Open in IMG/M
3300031893\|Ga0318536_10077423	Not Available	1644	Open in IMG/M
3300031910\|Ga0306923_10612270	Not Available	1221	Open in IMG/M
3300031912\|Ga0306921_11505487	Not Available	735	Open in IMG/M
3300031946\|Ga0310910_10691526	Not Available	806	Open in IMG/M
3300031954\|Ga0306926_11163439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	908	Open in IMG/M
3300031959\|Ga0318530_10045643	Not Available	1631	Open in IMG/M
3300031981\|Ga0318531_10120748	Not Available	1163	Open in IMG/M
3300032043\|Ga0318556_10171927	Not Available	1122	Open in IMG/M
3300032044\|Ga0318558_10157327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300032060\|Ga0318505_10067017	Not Available	1574	Open in IMG/M
3300032060\|Ga0318505_10500283	Not Available	573	Open in IMG/M
3300032066\|Ga0318514_10570208	Not Available	603	Open in IMG/M
3300032066\|Ga0318514_10599406	Not Available	586	Open in IMG/M
3300032090\|Ga0318518_10276019	Not Available	863	Open in IMG/M
3300032090\|Ga0318518_10353773	Not Available	754	Open in IMG/M
3300032091\|Ga0318577_10390659	Not Available	665	Open in IMG/M
3300032091\|Ga0318577_10496399	Not Available	582	Open in IMG/M
3300032205\|Ga0307472_100513052	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300032261\|Ga0306920_100261695	Not Available	2580	Open in IMG/M
3300033289\|Ga0310914_10547313	Not Available	1045	Open in IMG/M
3300033290\|Ga0318519_11011003	Not Available	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Aquatic	Environmental → Aquatic	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Freshwater	Environmental → Aquatic → Freshwater	5.00%
Cave	Environmental → Terrestrial → Cave	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.33%
Loam	Environmental → Terrestrial → Soil → Loam	15.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12654J13325_10167642	3300001160	Forest Soil	MPPLYLARIEDLERGDLVQVDCAACHHIALLRPDSLLRLGLSPQAKVLDLKGGV*
JGIcombinedJ26739_1016637582	3300002245	Forest Soil	MLPLYATRIEDLGQGDFVKVDCAACHHVALLTPQSLLRAGLSAAAKVL
JGI26340J50214_100740253	3300003368	Bog Forest Soil	MQPLYLARIEDLGRGDLVRVDCAACHHVALLTPEFLLQLGLSTQAKVLDLKW
Ga0062385_106538061	3300004080	Bog Forest Soil	MLPLYLARIEDLGRGDLVKVERRLHHVALLTPEFLRQLGLSPRVKVLDLKTRV*
Ga0062384_1000485862	3300004082	Bog Forest Soil	MLPLYLGADEDLGRGDLLRVDCAACRHVALLTRESLLRLGLSPQAKMLDLNHHLFEPKY*
Ga0062384_1008024512	3300004082	Bog Forest Soil	MLPLYLARIEDLGRGALVKVDCAACHHVVLLTSEFLLRLGLSRRTKVLNL*
Ga0062389_1008332813	3300004092	Bog Forest Soil	MRGTDASLYIPQIAALAWGDFVEVDCAACHHVALPTPGALLRVGLSPAAKVLDLKGRLR*
Ga0066684_100600141	3300005179	Soil	MQPLCLAGIEDLGPGDLVKVDCAACHHVALLRPDFLLRLGLSPAAKVLDL
Ga0070714_1005201813	3300005435	Agricultural Soil	MLPLYAARIEDLGRGDFVKVDCAPCQHVALLTRGLLKVGVSPAAKVLDLKGRFR
Ga0070706_1015848321	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MQPLYLARIEDLGRGDLVQVDCAACRHVALLTPGFLLRLGLSPQAKV
Ga0070707_1016299762	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQPLYLARIEDLKHGDLVKVDCAACHHVALLMPEFLLRLGLNPQAKVLDLKTRVRCRGCG
Ga0070697_1004336601	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGLGDFVKVDCAACRHVALLAPDFLVRLGLSPQAKVLDLKGR
Ga0070697_1012730611	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYSARVEDLGQGDFVKVDCAACHHVALVTPEALLRAGLSPAAELL
Ga0070704_1010003482	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACHHVAVLAPDFLLRLGLSPQTKVLDLKERVRC
Ga0066700_101724443	3300005559	Soil	MQSLYLARIEGLGRGDLVQVDCTVCHHVALLTPDFLLRLGLSRLGQNDV*
Ga0066903_1021687741	3300005764	Tropical Forest Soil	LYAARIEDLGRGDLLKVDCAGCHHVALLRVGLGLVVKVLDLKMRFRCRGCGARRSLKSSFLALKRRWPW*
Ga0070717_108431801	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEFLLRIGLRPGTKVLDLK
Ga0070716_1017032792	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFATVDCAACHPVALLTPEFLLRLGLSPQAKVLDLKER
Ga0070712_1018689441	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACRHVALLSPDFLLRLGLSPQAKVLDLKERVRCR
Ga0066709_1030757951	3300009137	Grasslands Soil	MQPLYLARIEDLGRGDLVQVDCGACHHVALLTPDFLLRLGLSPRAEVLDLKGRARCCGCG
Ga0126374_114931701	3300009792	Tropical Forest Soil	MTGMQPVYLARIEDLRVAIVKVDRAACHHVAVLTPEFLLQLGLSPRANAL
Ga0074044_102707932	3300010343	Bog Forest Soil	MLPLYLARIEDLGRGDLVKADCAACHHVGLLTPEFVLRLGLSP*
Ga0126372_130793842	3300010360	Tropical Forest Soil	MVPVYLARIEDLRQGEFVKVDCVGCCHVALLTRAVLLKLGLSPAASVLDKAMPV*
Ga0126378_102194882	3300010361	Tropical Forest Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV*
Ga0126378_106593983	3300010361	Tropical Forest Soil	MLPLYAARIADLGRGDFVKVDCTACHHVALLTPAALERLGLSLATKVLDLKVRL
Ga0126378_117051791	3300010361	Tropical Forest Soil	MLPLYAARIADLGPGDFVKVDCAACQHVALLPPEALLRAGLSPYWSLFPDRY*
Ga0126378_121418921	3300010361	Tropical Forest Soil	MLPLYAARIEDLGRGDLVKVDCADCRHVALLTQEALLRVGLSPAAKVLDLKGRL
Ga0126381_1014998542	3300010376	Tropical Forest Soil	MQPLYLARIEDLGRGDFVKIDCAACHHVALLTPEALLKLGLSPWSRSSI*
Ga0126381_1017567292	3300010376	Tropical Forest Soil	LLPLYAARIEDLGRGDLVKVDCAACRHVALLTPEVLVRAGLSPVTKVLDLK*
Ga0126381_1019392511	3300010376	Tropical Forest Soil	LRSRVLPLYVARIAGLGRGDLVKADCAACHHVALLTSAALLTLGLSPRPKCST*
Ga0126383_112940471	3300010398	Tropical Forest Soil	MQPLYLVRIEDLGRGDLVQVDCAACYHVALLTPDFLLRFGLSPQVKVLD
Ga0126383_126948771	3300010398	Tropical Forest Soil	MQPLHLARIEDLGRGDLVKVDCAACHNVALLTPDFLVWLGVSPQAKVPGPQRRVRCRGF
Ga0137364_107338141	3300012198	Vadose Zone Soil	ASMLPLYAARIEDLGPGEFVKVDCAACHHVALLTPDALLRVGLSPAAKVLDLKGRFRCR*
Ga0137360_102684193	3300012361	Vadose Zone Soil	MLPLYLARFKDLGRGDLVQVDCAACHHVALLTPDFLLRLGLSPEVVL*
Ga0137361_100703592	3300012362	Vadose Zone Soil	MVMVPLYLARIEDLGRGDLVQVDCAAYHPVALVTPEFLLRLGLSRQAKVLDLKSRVRCRGAERGDGPSSQ*
Ga0137395_111698462	3300012917	Vadose Zone Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEALMKAGLSAAAKVLDLKGRLRCRGCG
Ga0137359_109814721	3300012923	Vadose Zone Soil	MVMVPLYLARIEDLGRGDLVQVDCAAYHPVALVTPEFLLRLGLSRQAKVLDLKSRVRCRGCGAR*
Ga0182036_109560221	3300016270	Soil	MLPLYLARIEDLRRGDLVKVDCAACHHVALLTSDFLLGLGFSPSAKVLDLKWRVRCRGCG
Ga0182041_100071271	3300016294	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHPLFEPKY
Ga0182041_112517121	3300016294	Soil	LLPLYLARIEDLGRGDLVQVDCAACHHVALLTPEFMRLLGLSARAK
Ga0182033_100384178	3300016319	Soil	MLPLYLARIKDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDA
Ga0182033_106401541	3300016319	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRR
Ga0182034_106571642	3300016371	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVL
Ga0182040_100607392	3300016387	Soil	VYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0182040_106327172	3300016387	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRC
Ga0182039_103740273	3300016422	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFE
Ga0182038_100968861	3300016445	Soil	MLPLYLARIEDLRQGEFVKIDCASCHHVAVLSREFLLRLGLSPDAKVLDLKWR
Ga0210399_113667091	3300020581	Soil	MLPLYLARIEDLGQSDFVKVDCAACHHVALLTPVFLLKLGLSPQPNVLALNMRVRCRGCGARR
Ga0210401_115700281	3300020583	Soil	MLPLYAARIEDLGVGDFVKIDCAACHHVALLTPEALRKAGLSPAAKVLDLKGRLRC
Ga0210405_104698301	3300021171	Soil	MLPLYAARIEDLGQGDFVKVDCAGCDHIALLTPEALLRAGLRPTAKVRDLKGRL
Ga0210408_104433181	3300021178	Soil	MLPLYSARIEDLGSGDFVKVDCAACHHVALLTPEALLRAGLNPTAKILDLKARLRCRG
Ga0210408_108870562	3300021178	Soil	MLPLYAARIEDLRQGDVVTVDCAACHHVARLTPEALLRAGLQPRGEGSPPQGA
Ga0210389_111234261	3300021404	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLKGR
Ga0210386_113971321	3300021406	Soil	MLPLYAARIEDLGVGDFVKADCAACHHVAPLTPEILLSVGLSPGAKVLDIRGG
Ga0187846_101360931	3300021476	Biofilm	MLPLYLARIGDLRQGEFVKIDCASCHHVGVLTREFLLRLGLSPDAKVL
Ga0210402_112204981	3300021478	Soil	MRPLYAARIEDLGPGEFVKVDCAACHHVALLTPEALLNPAAKVLDLKG
Ga0210402_112424262	3300021478	Soil	LARIKDLGRGDLVKVDCAACHHVALLTPEFLLRLGLYPEAKVLDLKDRVRVPRLRSEGTS
Ga0210410_112636241	3300021479	Soil	MLPLYGAWIEDLGQSDFARVDCGACHNVALPAPEFLLRLGLSPQTEVL
Ga0210409_113532591	3300021559	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLK
Ga0210409_113592822	3300021559	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTSEALLGAGLRPSAKA
Ga0126371_103961721	3300021560	Tropical Forest Soil	LLPLYAARIEDLGRGDLVKVDCAACRHVALLTPEVLVRAGLSPVTKVLDLK
Ga0126371_135624751	3300021560	Tropical Forest Soil	MVLLYLARIEDLGLGDLVKVDCAAYSHTALLSTTFLLRLGIGPRDKVLDLK
Ga0242654_103006462	3300022726	Soil	MLPLCAARIEDLGQGDFVKVDCAACLHVALLAPHFLLRLGLSPHTKVLDVKQRVR
Ga0207700_111782321	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPDFLLGLGLSPQTKVLDLKER
Ga0257156_11113451	3300026498	Soil	MLPLYAARIEDLGLGDFVKVDCAACYHVALLTPELLLRLGLSPQTKVLDLKERV
Ga0209217_10138751	3300027651	Forest Soil	MPPLYLARIEDLERGDLVQVDCAACHHIALLRPDSLLRLGLSPQAKVLDLKGRV
Ga0209217_10368392	3300027651	Forest Soil	MQLLYLARIDDLGRGDLVQVDCAACRRVALLTPDFLLRF
Ga0209217_10851012	3300027651	Forest Soil	MQPLYLARIEDVERGDRVQVDCAACHHIALLRPDYLLRLGLSSQAKVLELKGRV
Ga0209248_100470164	3300027729	Bog Forest Soil	MQPLYLARIEDLRCGDLLRVDCATCHHVALLTPELLLRLGLSPQ
Ga0209526_101522971	3300028047	Forest Soil	MLPLCAARIEDLGQGDFVKVDCAACRHVALLSPDFLLRLGLSPQGQGARPQRA
Ga0209526_105186661	3300028047	Forest Soil	MLPLYAARIEDLGQSDFVKVDCAACHHVALLAPEFLLRLGLSLQGKVVDPAYN
Ga0222749_107732191	3300029636	Soil	LPLYTTRIEDLGQGDFVKVDCAACHHVALLTPEALLRAGLRPAAKVLDLKGRLRCRGCG
Ga0318516_100709403	3300031543	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFEPKY
Ga0318541_102480711	3300031545	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0318541_105028892	3300031545	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWRVRCRGCG
Ga0318538_100232785	3300031546	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0318538_104510542	3300031546	Soil	MLPLYLARIEDLRRGDLVKVDCAACHHVALLTSDFLLGLGFSPSAKVLDLKWRVRC
Ga0318528_100445641	3300031561	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAEVLDLKWRARCRGCG
Ga0318528_105846612	3300031561	Soil	MQPLYLARIEDLGHGDLVKVDCAACHRVALLTPEFPLRLGLNPRTQVLDLK
Ga0318573_104776941	3300031564	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRRAETER
Ga0318515_104926942	3300031572	Soil	MQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318542_105515532	3300031668	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAK
Ga0318574_101831701	3300031680	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWR
Ga0318572_101185711	3300031681	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEP
Ga0318501_102527541	3300031736	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTSEALLRVGLSRAAKVLDLKGRFRC
Ga0318501_105247751	3300031736	Soil	MQPLYLARIEDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318502_103723023	3300031747	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLG
Ga0318494_103690921	3300031751	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAEVL
Ga0318509_106050931	3300031768	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDK
Ga0318521_102969111	3300031770	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAK
Ga0318546_102805852	3300031771	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRAR
Ga0318552_101946741	3300031782	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEW
Ga0318557_101814903	3300031795	Soil	IPGTQTGMLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFEPKY
Ga0318576_105233362	3300031796	Soil	LARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWRVR
Ga0318568_101666551	3300031819	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLN
Ga0318499_102301591	3300031832	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLF
Ga0318527_104086821	3300031859	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLD
Ga0306919_107764363	3300031879	Soil	RSADEIGMVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMP
Ga0318544_103926371	3300031880	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPKAVLRVGLSPAVKVLDLR
Ga0318536_100774231	3300031893	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRFRCRGCG
Ga0306923_106122701	3300031910	Soil	STWARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0306921_115054871	3300031912	Soil	TQTGMQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0310910_106915261	3300031946	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLE
Ga0306926_111634392	3300031954	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPAALERVGLSLATKVLDLNGRL
Ga0318530_100456431	3300031959	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0318531_101207481	3300031981	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKW
Ga0318556_101719271	3300032043	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRRAE
Ga0318558_101573272	3300032044	Soil	ADEIGMVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0318505_100670175	3300032060	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAK
Ga0318505_105002831	3300032060	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLPKLGLSPAASVLDKAMPV
Ga0318514_105702081	3300032066	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDL
Ga0318514_105994061	3300032066	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEALLRVGLSRAAKVLDLKGRFRCRGCG
Ga0318518_102760192	3300032090	Soil	LLPLYLARIEDLGRGDLVKVDCAACHDVALLTPEFMRLLGLSARAKVLDLE
Ga0318518_103537731	3300032090	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDL
Ga0318577_103906591	3300032091	Soil	QTGMQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318577_104963991	3300032091	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWR
Ga0307472_1005130521	3300032205	Hardwood Forest Soil	MQPLYLARIEDLGRGDVVQVDCAACHHVALLTPEFLLRLGLSP
Ga0306920_1002616952	3300032261	Soil	MVPQYLARIEDLDCDDFVKVDCATCHHVALLTRGALLKLGLSPATKVLDLNMRVRCRGCG
Ga0310914_105473132	3300033289	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRARCRGCG
Ga0318519_110110031	3300033290	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences