Metagenome / Metatranscriptome Family F073880

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073880
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	102 residues
Representative Sequence	LSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Number of Associated Samples	114
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.83 %
% of genes near scaffold ends (potentially truncated)	95.83 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.833 % of family members)
Environment Ontology (ENVO)	Unclassified (19.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.81% β-sheet: 0.00% Coil/Unstructured: 37.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00171	Aldedh	5.83
PF07883	Cupin_2	3.33
PF03466	LysR_substrate	2.50
PF13191	AAA_16	1.67
PF00583	Acetyltransf_1	1.67
PF00589	Phage_integrase	1.67
PF00881	Nitroreductase	1.67
PF05973	Gp49	0.83
PF12697	Abhydrolase_6	0.83
PF11706	zf-CGNR	0.83
PF03972	MmgE_PrpD	0.83
PF03259	Robl_LC7	0.83
PF01381	HTH_3	0.83
PF00239	Resolvase	0.83
PF04978	DUF664	0.83
PF13515	FUSC_2	0.83
PF04434	SWIM	0.83
PF01593	Amino_oxidase	0.83
PF00903	Glyoxalase	0.83
PF09965	DUF2199	0.83
PF04343	DUF488	0.83
PF01555	N6_N4_Mtase	0.83
PF05119	Terminase_4	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	5.83
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	5.83
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	5.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.83
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.83
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.83
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.83
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.83
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.83
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.83
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.83
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.83
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	0.83
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.83
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.83
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.00 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.17 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.50 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.67 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.67 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.50 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.50 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.67 %
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.50 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.67 %
Acidovorax valerianellae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax valerianellae	1.67 %
Thermostaphylospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermostaphylospora	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.50 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.67 %
Acidovorax valerianellae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax valerianellae	1.67 %
Thermostaphylospora chromogena	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermostaphylospora → Thermostaphylospora chromogena	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.50 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.50 %
Acidovorax valerianellae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax valerianellae	1.67 %
Streptomyces sp. ISL-99	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ISL-99	0.83 %
Streptomyces sp. uw30	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. uw30	0.83 %
Thermostaphylospora chromogena	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermostaphylospora → Thermostaphylospora chromogena	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10050938	Not Available	1147	Open in IMG/M
3300005162\|Ga0066814_10047807	Not Available	696	Open in IMG/M
3300005355\|Ga0070671_101214131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300005434\|Ga0070709_10710695	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005439\|Ga0070711_100112986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1997	Open in IMG/M
3300005456\|Ga0070678_100751825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300005456\|Ga0070678_101526628	Not Available	626	Open in IMG/M
3300005458\|Ga0070681_11851494	Not Available	531	Open in IMG/M
3300005471\|Ga0070698_101710280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	582	Open in IMG/M
3300005530\|Ga0070679_100598569	Not Available	1046	Open in IMG/M
3300005563\|Ga0068855_102052195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300005591\|Ga0070761_10261551	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300005602\|Ga0070762_11046834	Not Available	561	Open in IMG/M
3300005614\|Ga0068856_100129445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2528	Open in IMG/M
3300005616\|Ga0068852_100134687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2280	Open in IMG/M
3300005841\|Ga0068863_102199309	Not Available	562	Open in IMG/M
3300006028\|Ga0070717_11775888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax valerianellae	558	Open in IMG/M
3300006059\|Ga0075017_100550752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	878	Open in IMG/M
3300006102\|Ga0075015_100820079	Not Available	560	Open in IMG/M
3300006174\|Ga0075014_100508087	Not Available	675	Open in IMG/M
3300006791\|Ga0066653_10643411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax valerianellae	542	Open in IMG/M
3300006903\|Ga0075426_10684570	Not Available	768	Open in IMG/M
3300009012\|Ga0066710_100805454	Not Available	1440	Open in IMG/M
3300009143\|Ga0099792_10393272	Not Available	847	Open in IMG/M
3300012206\|Ga0137380_10241125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1631	Open in IMG/M
3300012211\|Ga0137377_11013150	Not Available	761	Open in IMG/M
3300012497\|Ga0157319_1056169	Not Available	502	Open in IMG/M
3300012988\|Ga0164306_10736364	Not Available	787	Open in IMG/M
3300013306\|Ga0163162_11614106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300013307\|Ga0157372_10025213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6463	Open in IMG/M
3300014325\|Ga0163163_10814082	Not Available	997	Open in IMG/M
3300014493\|Ga0182016_10407150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300017934\|Ga0187803_10358560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300017937\|Ga0187809_10160179	Not Available	783	Open in IMG/M
3300017942\|Ga0187808_10435690	Not Available	602	Open in IMG/M
3300017947\|Ga0187785_10109057	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300017955\|Ga0187817_10465105	Not Available	807	Open in IMG/M
3300017970\|Ga0187783_10393891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1007	Open in IMG/M
3300017975\|Ga0187782_10886621	Not Available	691	Open in IMG/M
3300018007\|Ga0187805_10331576	Not Available	702	Open in IMG/M
3300018037\|Ga0187883_10470751	Not Available	646	Open in IMG/M
3300018088\|Ga0187771_11638193	Not Available	546	Open in IMG/M
3300018090\|Ga0187770_10600139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	875	Open in IMG/M
3300020081\|Ga0206354_11421925	Not Available	583	Open in IMG/M
3300020582\|Ga0210395_10095295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2198	Open in IMG/M
3300020582\|Ga0210395_11370800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300021180\|Ga0210396_11227586	Not Available	626	Open in IMG/M
3300021402\|Ga0210385_11201797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300021404\|Ga0210389_11500916	Not Available	512	Open in IMG/M
3300021405\|Ga0210387_10988616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300021406\|Ga0210386_10464250	Not Available	1093	Open in IMG/M
3300021420\|Ga0210394_10093865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ISL-99	2594	Open in IMG/M
3300021433\|Ga0210391_10726840	Not Available	777	Open in IMG/M
3300021474\|Ga0210390_10439290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1101	Open in IMG/M
3300021477\|Ga0210398_10686872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	828	Open in IMG/M
3300021479\|Ga0210410_10129640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2241	Open in IMG/M
3300021479\|Ga0210410_10403364	Not Available	1224	Open in IMG/M
3300021559\|Ga0210409_11138745	Not Available	655	Open in IMG/M
3300022557\|Ga0212123_10419324	Not Available	892	Open in IMG/M
3300022709\|Ga0222756_1093942	Not Available	505	Open in IMG/M
3300022712\|Ga0242653_1059054	Not Available	638	Open in IMG/M
3300024222\|Ga0247691_1014929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1249	Open in IMG/M
3300025625\|Ga0208219_1040046	Not Available	1219	Open in IMG/M
3300025900\|Ga0207710_10540428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300025906\|Ga0207699_10114504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1734	Open in IMG/M
3300025931\|Ga0207644_11640115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	539	Open in IMG/M
3300025932\|Ga0207690_10479724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermostaphylospora → Thermostaphylospora chromogena	1003	Open in IMG/M
3300026023\|Ga0207677_10141498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1842	Open in IMG/M
3300026088\|Ga0207641_10057192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3317	Open in IMG/M
3300026121\|Ga0207683_10653557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	974	Open in IMG/M
3300026551\|Ga0209648_10096789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. uw30	2427	Open in IMG/M
3300026557\|Ga0179587_11082129	Not Available	528	Open in IMG/M
3300027047\|Ga0208730_1002392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1710	Open in IMG/M
3300027066\|Ga0208236_1003811	Not Available	885	Open in IMG/M
3300027825\|Ga0209039_10250751	Not Available	707	Open in IMG/M
3300027867\|Ga0209167_10176192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300027986\|Ga0209168_10093610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1555	Open in IMG/M
3300028780\|Ga0302225_10251149	Not Available	844	Open in IMG/M
3300028798\|Ga0302222_10350698	Not Available	576	Open in IMG/M
3300028801\|Ga0302226_10228703	Not Available	792	Open in IMG/M
3300028808\|Ga0302228_10230797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300028879\|Ga0302229_10457700	Not Available	565	Open in IMG/M
3300029910\|Ga0311369_10160867	All Organisms → cellular organisms → Bacteria → Proteobacteria	2146	Open in IMG/M
3300029999\|Ga0311339_10021787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9482	Open in IMG/M
3300029999\|Ga0311339_10527311	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300030007\|Ga0311338_10795103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300030013\|Ga0302178_10427935	Not Available	586	Open in IMG/M
3300030056\|Ga0302181_10246241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	810	Open in IMG/M
3300030057\|Ga0302176_10230600	Not Available	740	Open in IMG/M
3300030490\|Ga0302184_10061779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1785	Open in IMG/M
3300030524\|Ga0311357_11152300	Not Available	673	Open in IMG/M
3300030598\|Ga0210287_1165440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300030677\|Ga0302317_10360151	Not Available	645	Open in IMG/M
3300030739\|Ga0302311_10153141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300030743\|Ga0265461_13914921	Not Available	507	Open in IMG/M
3300031236\|Ga0302324_100110542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4621	Open in IMG/M
3300031236\|Ga0302324_100129668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4189	Open in IMG/M
3300031236\|Ga0302324_102193272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	685	Open in IMG/M
3300031545\|Ga0318541_10610755	Not Available	610	Open in IMG/M
3300031564\|Ga0318573_10207950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1038	Open in IMG/M
3300031680\|Ga0318574_10130798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1415	Open in IMG/M
3300031715\|Ga0307476_10154394	Not Available	1651	Open in IMG/M
3300031718\|Ga0307474_10343813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1154	Open in IMG/M
3300031740\|Ga0307468_101598335	Not Available	609	Open in IMG/M
3300031747\|Ga0318502_10105184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1569	Open in IMG/M
3300031751\|Ga0318494_10009962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4469	Open in IMG/M
3300031778\|Ga0318498_10474696	Not Available	552	Open in IMG/M
3300031793\|Ga0318548_10222863	Not Available	926	Open in IMG/M
3300031819\|Ga0318568_10841528	Not Available	568	Open in IMG/M
3300031823\|Ga0307478_11238021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	621	Open in IMG/M
3300031831\|Ga0318564_10049235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1832	Open in IMG/M
3300031859\|Ga0318527_10449581	Not Available	549	Open in IMG/M
3300031879\|Ga0306919_11538488	Not Available	500	Open in IMG/M
3300031910\|Ga0306923_10131790	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300031962\|Ga0307479_10172605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2125	Open in IMG/M
3300032010\|Ga0318569_10390826	Not Available	648	Open in IMG/M
3300032066\|Ga0318514_10741216	Not Available	522	Open in IMG/M
3300032076\|Ga0306924_10640420	Not Available	1199	Open in IMG/M
3300032515\|Ga0348332_14307449	Not Available	580	Open in IMG/M
3300032895\|Ga0335074_10494988	Not Available	1272	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.00%
Host-Associated	Host-Associated	15.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Plants	Host-Associated → Plants	15.00%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.33%
Peat	Environmental → Terrestrial → Peat	15.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Freshwater	Environmental → Aquatic → Freshwater	6.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.00%
Sediment	Environmental → Aquatic → Sediment	2.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.83%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.50%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.50%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.00%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.50%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	15.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027066	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030598	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE048SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_100509382	3300003368	Bog Forest Soil	RLERHLSRVAPFFRATDTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR*
Ga0066814_100478072	3300005162	Soil	AAGTQTPTVRRLSVDGPVYRLASTVVGMVLGVWWGLRHPRRLTVLAIASDGYTVVFYVPWVARAVQRRRPRIAAGWALVMAGSVARLRAAAAEPLR*
Ga0070671_1012141313	3300005355	Switchgrass Rhizosphere	GVLREPGPEAPAAAGTQTPAAHRLSRYDPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0070709_107106952	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RHLARIAPVFRYTDTPQYRLASTVVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGAVARLRAASAEPLR*
Ga0070711_1001129861	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RHLSRVAPVFRYTDTPQYRLASTVAGMVIGVWWGLRWPRRRSVLAIAVEAPKAVITVPWVARAVQRRRPRIAAGYTLVVAGSVARLRAASAEPLR*
Ga0070678_1007518251	3300005456	Miscanthus Rhizosphere	RLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR*
Ga0070678_1015266281	3300005456	Miscanthus Rhizosphere	PAAARTPTPAARRLERHLSRVAPVFRYTDTPQYRLASTVAGMVIGVWWGLRWPRRRSVLAIAVEAPKAVITVPWVARAVQRRRPRIAAGYALVVAGSVARLRAASAEPLR*
Ga0070681_118514941	3300005458	Corn Rhizosphere	AARRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAAQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0070698_1017102801	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	TPTPAARRLERHLARAAPLFRATDTPLYRLASTVVGMVLGVWWGMRWPRRLTVLAIAVEAPNAVIHVPWVARAVQQRRPRIAAGWALVAAASVARLRAASAEPLR*
Ga0070679_1005985692	3300005530	Corn Rhizosphere	QREGVLRERGPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0068855_1020521951	3300005563	Corn Rhizosphere	TQTPAARRLSRYDPLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAAQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0070761_102615511	3300005591	Soil	APAAARTQTPAARRLERHLSRVAPLFRAMNTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIADGTYTVVFYVPWVARAVQRRRPRTAAGWALVAAGAVARLRAAAAEPLR*
Ga0070762_110468341	3300005602	Soil	TPAARRVERYLSRSAPFFRAMDTPLFRFASTVVGMFIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWLARAVQQRRPRIAAGWALVAAASVARLRAASAEPLR*
Ga0068856_1001294456	3300005614	Corn Rhizosphere	HRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0068852_1001346871	3300005616	Corn Rhizosphere	TQTPAARRLSRYDPLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR*
Ga0068863_1021993092	3300005841	Switchgrass Rhizosphere	EQNMQRLQREGVLREPGPEAPAAARTQTPAARRLSRYDPLFKLAATVMGHPLFKPAATVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR*
Ga0070717_117758881	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PLFKLAATVMGHPLFKPAVTVVGMVVGVWWGLRWPRRLTVLAIAGEAQNAVITVPWLARAVQRRRPRIAAGYALVVAGSLARLRAASAEPLQ*
Ga0075017_1005507523	3300006059	Watersheds	EPGPKAPAAAGTPTPAARRLERHLSRAAPLFKATNTPQYKLASPVAGMVLGVWWGLRHPRRLTVLAIASDGYTVVFYVPWVARAVQRRRPRIAAGWALVMAGAVARLRAAAAEPLR*
Ga0075015_1008200791	3300006102	Watersheds	FRATDTPQYRLASTVVGMVIGVWWGLRWPQRLTALAIAVETPNAVIHVPWVARAVQRRRPRIAAGWALVMAGSVARLRAASAEPLRLQQARSGHFTDRA*
Ga0075014_1005080871	3300006174	Watersheds	KAPAAAGTPTPAARRLNRHLARAAPLFKATNTPQYRLASTVAGMVIGVWWGMRHPRRLTVLAIASDGYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR*
Ga0066653_106434111	3300006791	Soil	PAAARTPAPAARRLNRHLARAAPLFKATGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAASAEPLR*
Ga0075426_106845701	3300006903	Populus Rhizosphere	PLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAIAGEAPAAVITVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR*
Ga0066710_1008054541	3300009012	Grasslands Soil	ARAAPLFKATGTPQYKLASTAVGMVIGVRWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAVAEPLR
Ga0099792_103932721	3300009143	Vadose Zone Soil	MTPLFKLAATVMGHPLFKPAVTVAGMVLGVWRGLRWPRRLTVLAIAGEAQTAVITVPWVARAVQRRRPRMAAGYALVVAGSVARLRAAAAEPLR*
Ga0137380_102411253	3300012206	Vadose Zone Soil	GRRLERHFERHISRYNAFFRATNTPQYKLASTVVGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAASAEPLR*
Ga0137377_110131501	3300012211	Vadose Zone Soil	PAAAGTQTPAARRLSRYDPLFKLAATVMDHPLFKPAVTVVGMVIGVWWGLRWPRRLSVLAVAGEAPYVVVTVLWAGRAVQRRRPRIAAGYALVVAGSVAQLRAASAEPLR*
Ga0157319_10561691	3300012497	Arabidopsis Rhizosphere	MERHFERHQSRYTALFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLTIAGVALNAVIHVPWVARAVQRRRPRMAAGYALVAAGAIARLRAASAEPLR*
Ga0164306_107363642	3300012988	Soil	MERHFERHQSRYTALFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVVAGSVARLRAASAEPLR*
Ga0163162_116141061	3300013306	Switchgrass Rhizosphere	RRLSRYDPLFKLAATVMGHPLFKPAATVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR*
Ga0157372_100252131	3300013307	Corn Rhizosphere	QNMQRLQREGVLREPGPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR*
Ga0163163_108140821	3300014325	Switchgrass Rhizosphere	ISRYNAFFRAANTPLYKLAFTVVGMVLGVWWAMRWPRRLTVLAIAVEAPNAVIHVPWLARAVQQRRPRIAAGWALVAAASVARLRAASAEPLR*
Ga0182016_104071501	3300014493	Bog	HLARAAPLFKATGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIAGEAQNAVITVPWVARAVQRRRPRIAAGWALVAAGSVARLPAAVAEPLR*
Ga0187803_103585603	3300017934	Freshwater Sediment	APVFRYTYIPLYRLASTVVVTVIGVWWGLRHPRRLTVLAIAAEAPNAVIQVPWVARAVQRRRPRMVAGYALIVAGSVARLRAASAEPLR
Ga0187809_101601791	3300017937	Freshwater Sediment	KPGPKAPAAARTPGPAARRLEPHLARLAPLFKATDTPQYKLASTVVGMVIGVWWGLRWPRRLTVLAIAGEAPAAVLTVPWVARAVQRRRPRIVAGYALRAAGSVARLRAASAEPLR
Ga0187808_104356901	3300017942	Freshwater Sediment	TPTPAARRLSRYDPVFKLAATVMGHPLFKPASTVVGMVIGVWWGLRHPRRLTVLAIAGEAANAVIIVPWVARAVQRRRPRMAVGYALVVAGSVARLRAASAEPLR
Ga0187785_101090574	3300017947	Tropical Peatland	AFFRTAKAADAPLYKLAFTVVGMVLGVWWGLRWPRRLTVLAIPRVALNAVIHVPWVARAVQQRRPRTAAGYTLVAAGSVARLRAASAEPLR
Ga0187817_104651052	3300017955	Freshwater Sediment	FKPAAGVMGHPLFKPAAGVGGMVLSVWCLRHPRRLTVLAIACEAPAAVITVPWVALAVQRRRPRMAAGYALMVAGSVARLRAVSAEPLR
Ga0187783_103938911	3300017970	Tropical Peatland	RTQTPAARRLDGCLSRVLPLFKYTDTPQYKLASTVAGMVLGVWWGMRWPRRLTVLTIARVALNAVILVPWVARAVQQRRPRTAAGYTLVVAGSVARLPAASAEPLR
Ga0187782_108866211	3300017975	Tropical Peatland	RLDGCLSRVAPLFKYTNTPQYKLASTVAGMVLGVWWGLRWPRRLTVLTSARVALNAVIHVPWVARAVQQRRPRTATGYTLVAAGSVARLRAASAEPLR
Ga0187805_103315761	3300018007	Freshwater Sediment	PKAPAAAGTPTPAARRLERHLSRSAPFFKATDTPQYKFASTVVGMVLGVWWGLRHPRRLTVLTIASESYTVVFYVPWMARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0187883_104707511	3300018037	Peatland	PKAQAAAGTQTPAARRLSRYDPLFKLAATGMDHPLFKPAGTVAGMIIGVWWGLRWPRRLSVLAVAGEAPYAVFTLLWAGRAAQRRRPRIAAGYALVVGGSVSGLRAASAEPLR
Ga0187771_116381931	3300018088	Tropical Peatland	KAPAAAGTQTPAARRLSRYDPLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAVAGETPAAVLTVPWVARAVQRRRPRMAAGYALVVAGSIARLRAASAEPLR
Ga0187770_106001392	3300018090	Tropical Peatland	APLFKATDTPQYKLASTVAGMVLGVWWGLRWPRRLTVLASARVALNAVIHVPWVARAVQRRRPRIAAGWVLVAAGSVARLRAASAEPLR
Ga0206354_114219251	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MERHFERHQSRYTALFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVVAGSVARLRAASAEPLR
Ga0210395_100952951	3300020582	Soil	LARVAPLFRATNTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIADGTYTVVFYVPWVARAVQRRRPRTAAGWALVAAGAVARLRAAAAEPLR
Ga0210395_113708001	3300020582	Soil	LERHLARVAPLFKATNTPQYRLASTVAGMVIGVRWGLRHPRRLTVLAIASESYAVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0210396_112275861	3300021180	Soil	AGTETPAARRLNRYLARAAPLFKATSTPQYRLAFTVVGMVIGVWWGLRHPRRLTVLAIASETYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0210385_112017971	3300021402	Soil	HLSRAVPLFKVTNTPQYRLAATVVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWAARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0210389_115009162	3300021404	Soil	PLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWMARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0210387_109886162	3300021405	Soil	PTPAARRLERHLSRAAPFFKATDTPQYRLASPVVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWLARAVQRRRPRTAAGWALVIAGSVARLRAAAAEPLRKQQARSR
Ga0210386_104642501	3300021406	Soil	RYLARAAPLFKVTGTPQYKLASTAVGMVLGVRWGLRHPRRLTVLAIVSGSYTVVFYVPWVARAVQRRRPRTAAGWALVVAGAVARLRAAAAEPLR
Ga0210394_100938652	3300021420	Soil	HLSRVAPLFRAMNTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIVSGSYTVVFYVPWVARAVQRRRPRTAAGWALVVAGAVARLRAAAAEPLR
Ga0210391_107268401	3300021433	Soil	ARRLNRYLERAAPLFKAAGTPQYKLAFTAVGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0210390_104392902	3300021474	Soil	PLFKATDTPQYRLASPVVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWLARAVQRRRPRTAAGWALVIAGSVARLRAAAAEPLRKQQARSR
Ga0210398_106868721	3300021477	Soil	RLERYLARVAPLFRAMNTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIADGTYTVVFYVPWVARAVQRRRPRTAAGWALVAAGAVARLRAAAAEPLR
Ga0210410_101296401	3300021479	Soil	PKPGPKAPAAARTPTPAARRLNRYLARAAPLFKATNTPQYKLASTIVAMVLGVWWGLRHPRRLTVLAIASESYTAVFYVPWMARAVQRRRPRTAAGWALVSAGSVARLRAAAAEPLR
Ga0210410_104033642	3300021479	Soil	PLFKATGTPQYKLASTAVGMVLGVRWGLRHPRRLTVLAIVSGSYTVVFYVPWVARAVQRRRPRTAAGWALVVAGAVARLRAAAAEPLR
Ga0210409_111387451	3300021559	Soil	AAARTPTPAARRLNRYLARAAPLFKATGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGAVARLRAAAAEPLR
Ga0212123_104193241	3300022557	Iron-Sulfur Acid Spring	PLFKATGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIASESWTAVFYVPWVARAVQRRRPRTAAGWALVAAGSVALLRAASAEPLR
Ga0222756_10939421	3300022709	Soil	LSRVAPLFRAMNTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIASESYTVVFYVPWMARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0242653_10590541	3300022712	Soil	REPGTEAPAAARTQTPAARRLERQLSRVVPLFRAMGTPQYRLASTVVGMVLGVRWGLRHPRRLTVLAIASESYTVVFYVPWMARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0247691_10149294	3300024222	Soil	RRISRYNAFFRAANTPLYKLAFTVVGMVLGVWWAMRWPRRLTVLAIAVEAPNAVIHVPWLARAVQQRRPRIAAGWALVAAASVARLRAASAEPLR
Ga0208219_10400461	3300025625	Arctic Peat Soil	APFFRATGTPQYRLASTAAGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWLARAVQRRRPRIAAGWALVITGSVARLRAAAAEPLR
Ga0207710_105404282	3300025900	Switchgrass Rhizosphere	QNMQRLQREGVLREPGPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAATVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR
Ga0207699_101145041	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	EAPTPAEVRQNMEQNMQRLQREGVLRERGPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR
Ga0207644_116401152	3300025931	Switchgrass Rhizosphere	LQREGVLREPGPEAPAAAGTQTPAAHRLSRYDPLFKPAVTVVGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR
Ga0207690_104797242	3300025932	Corn Rhizosphere	QNMQRLQREGVLREPGPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR
Ga0207677_101414981	3300026023	Miscanthus Rhizosphere	RYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR
Ga0207641_100571926	3300026088	Switchgrass Rhizosphere	GPEAPAAAGTQTPAAHRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVPGVWWGLRWPRRLTVLAIAGEAPAVVITVPWVARAVQRRRPRMAIGYALVVAGSVVRLRAASAEPLR
Ga0207683_106535571	3300026121	Miscanthus Rhizosphere	PAAARTQTPAARRLSRYDPLFKLAATVMGHPLFKPAVTVAGMVLGVWWGLRWPRRLTVLAIAGEAPAVVVTVPWVARAVQRRRPRMAVGYALVVAGSVVRLRAASAEPLR
Ga0209648_100967892	3300026551	Grasslands Soil	LQREGVLREPGPKAPAAAGTPTPAARRLSRYDPLFKLAATVMDHPLFKPAVTVVGMVLGVWWGLRWPRRLSVLAVAGEAPYAVLTLLWAGRAVQRRRPRIAAGYALVAAGSVARLRAASAEPLR
Ga0179587_110821292	3300026557	Vadose Zone Soil	AGTQTPAARRLSRYDPLFKLAATVMDHPLFKPAVPPVVGMVIGVWWGLRWPRRLSVLVVAGEAPYAVLTLLLAGRAVQRRRPRIAAGYALVVAGSVARLRAASAEPLR
Ga0208730_10023921	3300027047	Forest Soil	AAPFFRATNTPQYRLASTVVGMVIGVRWGLRHPRRLTVLAIANGTYTVVFYVPWVARAVQRRRPRIAAGWALVMAGSAARLRAAAAVPLR
Ga0208236_10038112	3300027066	Forest Soil	APLFKATGTPQYKLASTAVVMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWMARAVQRRRPRIAAGWALVMAGSVARLRAAAAEPLR
Ga0209039_102507511	3300027825	Bog Forest Soil	LNRHLARAAPLFKATGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWLARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0209167_101761921	3300027867	Surface Soil	RLERHLSRAAPFFRATNTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGYALVAAGSAARLRAAAAEPLR
Ga0209168_100936102	3300027986	Surface Soil	LFKATGTPQYKLASTAVVMVLGVWWGLRHPRRLTVLAIASESYTGVFYVPWVVRAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0302225_102511491	3300028780	Palsa	REGALPEPGTKTPAAVRTPTPAARRLNRYLSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302222_103506981	3300028798	Palsa	PLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302226_102287032	3300028801	Palsa	LNRYLARAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302228_102307973	3300028808	Palsa	LSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0302229_104577001	3300028879	Palsa	EPGIKAPAAAWTPTPAARRLNRYLARAAPLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0311369_101608672	3300029910	Palsa	ARRLNRYLSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0311339_100217871	3300029999	Palsa	EPGTKTPAAVRTPTPAARRLNRYLSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0311339_105273113	3300029999	Palsa	PLFKAAGTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIAGEAQNAVFYVPWVARAVQRRRPRIAIGWALVVAGSAARLRAAAAEPLR
Ga0311338_107951031	3300030007	Palsa	TPTPAARRLNRYLARAAPLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0302178_104279351	3300030013	Palsa	AAWTPTPAARRLNRYLARAVPLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0302181_102462412	3300030056	Palsa	AARRLNRYLARAAPLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0302176_102306001	3300030057	Palsa	RTPTPAARRLNRYLSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302184_100617791	3300030490	Palsa	HLARAAPLFKAAGTPQYRLASTVVGMVLGVWWGLRHPRRLTVLAIAAEVPNAVIHVPWVARAVQRRRPRIAAGWVLVAAGSAARLRAASAEPLR
Ga0311357_111523002	3300030524	Palsa	ARRLNRYLARAAPLFKAAGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLRAAAAEPLR
Ga0210287_11654402	3300030598	Soil	GPKAPAAARTQTPAARRLNRYLARVAPLFKTTDTPQYRIASPVVGMVLGVRWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWTLVVAGSVARLWAASAEPLR
Ga0302317_103601512	3300030677	Palsa	TPTPAARRLNRYLSRAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302311_101531411	3300030739	Palsa	PLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASGSYTVVFYVPWVARAVQRRRPRIAAGWALVMAGSVARLWAAAAEPLR
Ga0265461_139149211	3300030743	Soil	PLFKATSTPQYKLASTAVGMVIGVWWGLRHPRRLTVLAIASESSTVVFYVPWAARAVQQRRPRIAAGWALVAAGSVARLRAASAEPLR
Ga0302324_1001105428	3300031236	Palsa	RAAPLFKATGTPQYKLASTAVGMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAIGWALVIAGSAARLPAAAAEPLR
Ga0302324_1001296688	3300031236	Palsa	APAAARTQTPAARRLNRYLARAAPLFKATGTPQYKLASTAVGMVLGVWWDLRHPRRLTVLAIASGSYTVVFYVPWVARAVQRRRPRIAAGWALVMAGSVARLWAAAAEPLR
Ga0302324_1021932721	3300031236	Palsa	RHLSRYAPFFRATDTPLYRLASTFVGMVLGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWVARAVQRRRPRIAAGWALVAAGSVARLRAAAAEPLR
Ga0318541_106107551	3300031545	Soil	LREPGPKAPAAAGAQTPAARRLSWYDPLFKLAATVMEHPLFKPAVTVVGMVLGVWWGLRWPRRLSVLAVAGEAPAAVLTVPWVARAVQRRRPRMAAGYALVVAGSVAR
Ga0318573_102079501	3300031564	Soil	SRYAAFFRATNTPLYKLAFTAVGMVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIAAGWALVIAASVARLRAAAAEPLR
Ga0318574_101307984	3300031680	Soil	LERHQSRYAAFFRATNTPLYKLAFTAVGMVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIATGWALVIAASVARLRAAAAEPLR
Ga0307476_101543943	3300031715	Hardwood Forest Soil	RQLSRVVPLFRAMGTPQYRLASTVVGMVLGVRWGLRHPRLTVLAIVSGSYTVVFYVPWVARAVQRRRPRTAAGWALVVAGAVARLRAAAAEPLR
Ga0307474_103438132	3300031718	Hardwood Forest Soil	PGPKAPAAARTPAPAARRLNRYLARAAPLFKATGTPQYKLASTAVVMALGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLWAASAEPLR
Ga0307468_1015983351	3300031740	Hardwood Forest Soil	RLERNFERHIARYNAFFRAANTPLYKLAFTVVGMVLGVWWAMRWPRRLTVLAIAVEAPNAVIHVPWLARAVQQRRPRIAAGWALVAAASVARLRAASAEPLR
Ga0318502_101051843	3300031747	Soil	PPIAVRRLFRATNTPLYKLAFTAVGMVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIAAGWALVIAASVARLRAAAAEPLR
Ga0318494_100099621	3300031751	Soil	AFFKAADTPLYKLAFTVVGMVLGVWWGLRWPRRLTVLVIVLAAPNAVILVPWVARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0318498_104746961	3300031778	Soil	RTPTPAGRRMERHFERHQSRYTAFFRAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0318548_102228632	3300031793	Soil	HQSRYTAFFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0318568_108415282	3300031819	Soil	YTAFFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0307478_112380212	3300031823	Hardwood Forest Soil	RYDPLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRHPRRLTVLAIAGESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLWAASAEPLR
Ga0318564_100492351	3300031831	Soil	PRAPPIAVRRLFRATNTPLYKLAFTAVGMVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIATGWALVIAASVARLRAAAAEPLR
Ga0318527_104495811	3300031859	Soil	ARGSPPGAPPIAGRPLFRATDAPMYRLASTVVGMVLGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWVARAVQRRRPRIAAGWALVAAGSVARLRAASAEPLR
Ga0306919_115384881	3300031879	Soil	TPGPAGRRLERHFERHQSRYAAFFRAAQTPLYKLAFTVVGMVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWVARAVQRRRPRIAAGWALVVAGSVARLRAASAEPLR
Ga0306923_101317901	3300031910	Soil	EHHQSRYTAFFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWMARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0307479_101726053	3300031962	Hardwood Forest Soil	LSRYDPLFKLAATVMGHPLFKPAVTVVGMVLGVWWGLRHPRRLTVLAIAGESYTVVFYVPWVARAVQRRRPRIAAGWALVVAGSVARLWAASAEPLR
Ga0318569_103908262	3300032010	Soil	SRYTAFFKAADTPQYKLAFTVVGMALGVWWGLRWPRRLTVLVIVLAAPNAVILVPWVARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0318514_107412161	3300032066	Soil	YRGTPPFSGPRRPPQYRLAFTVVGMVLGVWWGMRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIAAGWALVAAASVARLRAASAEPLR
Ga0306924_106404203	3300032076	Soil	RHQSRYNAFFKAADTPLYKLAFTVVGMVLGVWWGLRWPRRLTVLVIVLAAPNAVILVPWVARAVQRRRPRIAAGYVLVAAGSVARLRAASAEPLR
Ga0348332_143074491	3300032515	Plant Litter	AARRLNRYLSRAAPLFKAAGTPQYKLASTAVVMVIGVWWGLRHPRRLTVLAIAAEGYTVVFYVPWVAWAVQRRRPRIAAGWALVMAGSVARLRAASAEPLR
Ga0335074_104949882	3300032895	Soil	GPKAPAAAGTQTPAARRLSRYDPLFRLAATVTGHPLFKPAGTVVGMVLSVWWGLRWPRRLTVLAIAGEAQNAVITAPWLARAVQRRRPRIAAGYALVVAGSVARLPAASAEPLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073880

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences