Metagenome / Metatranscriptome Family F073877

Basic Information
Family ID	F073877
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	61 residues
Representative Sequence	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Number of Associated Samples	92
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.00 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	92.50 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (78.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.833 % of family members)
Environment Ontology (ENVO)	Unclassified (24.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.333 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.74% β-sheet: 11.29% Coil/Unstructured: 70.97%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00903	Glyoxalase	3.33
PF13426	PAS_9	3.33
PF09939	DUF2171	2.50
PF13188	PAS_8	2.50
PF01243	Putative_PNPOx	0.83
PF12244	DUF3606	0.83
PF13683	rve_3	0.83
PF12681	Glyoxalase_2	0.83
PF00691	OmpA	0.83
PF01936	NYN	0.83
PF16242	Pyrid_ox_like	0.83
PF00723	Glyco_hydro_15	0.83
PF00916	Sulfate_transp	0.83
PF00199	Catalase	0.83
PF11684	DUF3280	0.83
PF00188	CAP	0.83
PF08238	Sel1	0.83
PF13356	Arm-DNA-bind_3	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.83
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.83
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.83
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.83
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.83
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
All Organisms	root	All Organisms	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
cellular organisms	root	All Organisms → cellular organisms	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.67 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.83 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.33 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_159264	Not Available	582	Open in IMG/M
3300001471\|JGI12712J15308_10067654	Not Available	904	Open in IMG/M
3300001867\|JGI12627J18819_10310352	Not Available	636	Open in IMG/M
3300002245\|JGIcombinedJ26739_100055180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3626	Open in IMG/M
3300002245\|JGIcombinedJ26739_100581677	Not Available	997	Open in IMG/M
3300002245\|JGIcombinedJ26739_100737192	Not Available	864	Open in IMG/M
3300003505\|JGIcombinedJ51221_10405379	Not Available	553	Open in IMG/M
3300004092\|Ga0062389_100769998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1140	Open in IMG/M
3300004092\|Ga0062389_101373750	Not Available	891	Open in IMG/M
3300005353\|Ga0070669_101315602	Not Available	626	Open in IMG/M
3300005444\|Ga0070694_101492612	Not Available	572	Open in IMG/M
3300005536\|Ga0070697_100717156	Not Available	883	Open in IMG/M
3300005544\|Ga0070686_101310855	Not Available	605	Open in IMG/M
3300005549\|Ga0070704_101078506	Not Available	729	Open in IMG/M
3300005718\|Ga0068866_10464938	Not Available	830	Open in IMG/M
3300006052\|Ga0075029_100077011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1970	Open in IMG/M
3300006052\|Ga0075029_100583205	Not Available	745	Open in IMG/M
3300006059\|Ga0075017_100072865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2348	Open in IMG/M
3300006059\|Ga0075017_101093875	Not Available	622	Open in IMG/M
3300006086\|Ga0075019_10147526	Not Available	1373	Open in IMG/M
3300006162\|Ga0075030_100678137	Not Available	816	Open in IMG/M
3300006174\|Ga0075014_100636179	Not Available	614	Open in IMG/M
3300006174\|Ga0075014_100929311	Not Available	523	Open in IMG/M
3300006354\|Ga0075021_10833579	Not Available	597	Open in IMG/M
3300006354\|Ga0075021_11077073	Not Available	526	Open in IMG/M
3300006852\|Ga0075433_11257801	Not Available	642	Open in IMG/M
3300006914\|Ga0075436_101097656	Not Available	599	Open in IMG/M
3300009098\|Ga0105245_12776918	Not Available	542	Open in IMG/M
3300009147\|Ga0114129_10541966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1514	Open in IMG/M
3300009148\|Ga0105243_10053813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3193	Open in IMG/M
3300009156\|Ga0111538_13323317	Not Available	559	Open in IMG/M
3300009162\|Ga0075423_10370689	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300009176\|Ga0105242_11469171	Not Available	711	Open in IMG/M
3300009522\|Ga0116218_1032482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2349	Open in IMG/M
3300010373\|Ga0134128_10144719	Not Available	2688	Open in IMG/M
3300010375\|Ga0105239_10307032	Not Available	1787	Open in IMG/M
3300010379\|Ga0136449_102544818	Not Available	732	Open in IMG/M
3300010379\|Ga0136449_104265014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	529	Open in IMG/M
3300010396\|Ga0134126_11515666	Not Available	739	Open in IMG/M
3300010400\|Ga0134122_10911902	Not Available	851	Open in IMG/M
3300010401\|Ga0134121_12258150	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300011119\|Ga0105246_12166932	Not Available	540	Open in IMG/M
3300012181\|Ga0153922_1054894	Not Available	886	Open in IMG/M
3300012955\|Ga0164298_10662263	Not Available	726	Open in IMG/M
3300012957\|Ga0164303_10482840	Not Available	789	Open in IMG/M
3300012958\|Ga0164299_10554251	Not Available	776	Open in IMG/M
3300012984\|Ga0164309_10815174	Not Available	753	Open in IMG/M
3300012987\|Ga0164307_11105864	Not Available	651	Open in IMG/M
3300012989\|Ga0164305_11258810	Not Available	644	Open in IMG/M
3300013297\|Ga0157378_11461668	Not Available	727	Open in IMG/M
3300013306\|Ga0163162_12776504	Not Available	564	Open in IMG/M
3300014325\|Ga0163163_11628445	Not Available	706	Open in IMG/M
3300015371\|Ga0132258_11032771	Not Available	2077	Open in IMG/M
3300015371\|Ga0132258_12776093	Not Available	1220	Open in IMG/M
3300015372\|Ga0132256_103737566	Not Available	512	Open in IMG/M
3300015373\|Ga0132257_102981006	Not Available	617	Open in IMG/M
3300015374\|Ga0132255_101357989	Not Available	1073	Open in IMG/M
3300015374\|Ga0132255_103011140	Not Available	719	Open in IMG/M
3300017822\|Ga0187802_10047983	Not Available	1556	Open in IMG/M
3300017822\|Ga0187802_10184134	Not Available	801	Open in IMG/M
3300017822\|Ga0187802_10200175	Not Available	768	Open in IMG/M
3300017924\|Ga0187820_1285229	Not Available	539	Open in IMG/M
3300017924\|Ga0187820_1322935	Not Available	511	Open in IMG/M
3300017943\|Ga0187819_10650276	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300017955\|Ga0187817_10665434	Not Available	664	Open in IMG/M
3300017955\|Ga0187817_10721595	Not Available	636	Open in IMG/M
3300017995\|Ga0187816_10312594	Not Available	690	Open in IMG/M
3300020580\|Ga0210403_10300953	Not Available	1314	Open in IMG/M
3300020581\|Ga0210399_10981679	Not Available	681	Open in IMG/M
3300020582\|Ga0210395_10643250	Not Available	795	Open in IMG/M
3300020582\|Ga0210395_10656231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	786	Open in IMG/M
3300020582\|Ga0210395_11019107	Not Available	613	Open in IMG/M
3300020583\|Ga0210401_10626526	Not Available	937	Open in IMG/M
3300020583\|Ga0210401_11028323	Not Available	683	Open in IMG/M
3300020583\|Ga0210401_11448015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	544	Open in IMG/M
3300021088\|Ga0210404_10788555	Not Available	543	Open in IMG/M
3300021170\|Ga0210400_11051778	Not Available	660	Open in IMG/M
3300021178\|Ga0210408_10156154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1808	Open in IMG/M
3300021178\|Ga0210408_11073676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	620	Open in IMG/M
3300021180\|Ga0210396_10335394	Not Available	1335	Open in IMG/M
3300021181\|Ga0210388_10427774	Not Available	1164	Open in IMG/M
3300021361\|Ga0213872_10335264	Not Available	623	Open in IMG/M
3300021402\|Ga0210385_11512765	Not Available	513	Open in IMG/M
3300021405\|Ga0210387_11720674	Not Available	530	Open in IMG/M
3300021406\|Ga0210386_10669252	Not Available	895	Open in IMG/M
3300021407\|Ga0210383_11208504	Not Available	635	Open in IMG/M
3300021407\|Ga0210383_11210902	Not Available	634	Open in IMG/M
3300021432\|Ga0210384_10667068	Not Available	932	Open in IMG/M
3300021474\|Ga0210390_10956961	Not Available	702	Open in IMG/M
3300021474\|Ga0210390_11500466	Not Available	534	Open in IMG/M
3300021475\|Ga0210392_11065161	Not Available	606	Open in IMG/M
3300021475\|Ga0210392_11094937	Not Available	597	Open in IMG/M
3300022527\|Ga0242664_1066929	Not Available	687	Open in IMG/M
3300022557\|Ga0212123_10093093	Not Available	2490	Open in IMG/M
3300022557\|Ga0212123_10395147	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300022557\|Ga0212123_10708255	Not Available	619	Open in IMG/M
3300025906\|Ga0207699_11267518	Not Available	546	Open in IMG/M
3300025916\|Ga0207663_10405045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1044	Open in IMG/M
3300025927\|Ga0207687_11809742	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300025933\|Ga0207706_10186201	Not Available	1823	Open in IMG/M
3300025934\|Ga0207686_10349822	Not Available	1112	Open in IMG/M
3300027117\|Ga0209732_1070987	Not Available	606	Open in IMG/M
3300027575\|Ga0209525_1104853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	666	Open in IMG/M
3300027701\|Ga0209447_10065768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300027873\|Ga0209814_10564129	Not Available	507	Open in IMG/M
3300027895\|Ga0209624_10252730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1172	Open in IMG/M
3300027908\|Ga0209006_10306784	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300027909\|Ga0209382_11366127	Not Available	714	Open in IMG/M
3300028047\|Ga0209526_10452925	Not Available	844	Open in IMG/M
3300031128\|Ga0170823_14199680	Not Available	828	Open in IMG/M
3300031708\|Ga0310686_111510607	Not Available	733	Open in IMG/M
3300031708\|Ga0310686_113096735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1447	Open in IMG/M
3300031708\|Ga0310686_115674849	All Organisms → cellular organisms → Bacteria → Proteobacteria	2527	Open in IMG/M
3300031708\|Ga0310686_118475156	Not Available	917	Open in IMG/M
3300031718\|Ga0307474_10231021	Not Available	1414	Open in IMG/M
3300031718\|Ga0307474_10376837	Not Available	1102	Open in IMG/M
3300031754\|Ga0307475_11451230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	528	Open in IMG/M
3300031962\|Ga0307479_11213095	Not Available	718	Open in IMG/M
3300032160\|Ga0311301_10057691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8603	Open in IMG/M
3300032180\|Ga0307471_101293673	Not Available	892	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.67%
Host-Associated	Host-Associated	23.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.83%
Plants	Host-Associated → Plants	22.50%
Aquatic	Environmental → Aquatic	20.83%
Fungi	Host-Associated → Fungi	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.83%
Freshwater	Environmental → Aquatic → Freshwater	10.00%
Sediment	Environmental → Aquatic → Sediment	8.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.50%
Roots	Host-Associated → Plants → Roots	0.83%
Mycelium	Host-Associated → Fungi → Mycelium	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.67%
Loam	Environmental → Terrestrial → Soil → Loam	14.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.17%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.67%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.33%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.50%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.67%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.33%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.33%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.50%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_02931140	2199352024	Soil	AVDSDGALGRSATMPTWRADHFDNPKDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAKSLAA
JGI12712J15308_100676542	3300001471	Forest Soil	MPTWRADYFDNPKDSAPSRSEIIVAENESDALHEARNKMGSLCSRAEVIPLEVTANPQSHCALPMKSPL*
JGI12627J18819_103103522	3300001867	Forest Soil	FDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
JGIcombinedJ26739_1000551804	3300002245	Forest Soil	MPTWRADYFDNSKDSAPSRSEIIVAENESDALHEAHSKMGSPCSRAEVIPLEVTGL*
JGIcombinedJ26739_1005816771	3300002245	Forest Soil	MPIWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
JGIcombinedJ26739_1007371921	3300002245	Forest Soil	MPTWRADYFHNPKDEAPSRSEIIVAENESDALHEARSKMGSVCSRAEVIRVEVTANPQSLAA*
JGIcombinedJ51221_104053791	3300003505	Forest Soil	MPTWRADYFHNPKDEAPSRSEIIVAENESDALHEARSKMGSVCSRAEVIRVEVIHTVESPLAA*
Ga0062389_1007699981	3300004092	Bog Forest Soil	MPIWRADYFDKTRDQPPTRSVIIEAEYESDALDEARAKMGSACRRAEVIRLEPKPSTTTH
Ga0062389_1013737501	3300004092	Bog Forest Soil	MPTWRADYFDKARDRAPTRSVIIKAEYETDALDEARAKMGSACSAEVIRINISSGATTH*
Ga0070669_1013156022	3300005353	Switchgrass Rhizosphere	ADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0070694_1014926121	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNSDGGLGRSATMPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0070697_1007171562	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAVDSDGGLGRSATMPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGALCSRAEMIPLEVTAVPQSLAA*
Ga0070686_1013108551	3300005544	Switchgrass Rhizosphere	MPTWRADYFDNPRDNSPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEGTANPQSLAA*
Ga0070704_1010785061	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVMPLEVTANPQSLAA*
Ga0068866_104649381	3300005718	Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVAANPQSLAA*
Ga0075029_1000770111	3300006052	Watersheds	MPTWRADYFDKATDQAPTRSVIIEAERESDALDKARAEMRSACSRAELIRIDFNSSATTQ
Ga0075029_1005832052	3300006052	Watersheds	MPRWRADYFDNPKDNAPSRSEIIVAENESDALDQARSKMDSVCSRAEVIRLEVSANPPSLAA*
Ga0075017_1000728656	3300006059	Watersheds	MPTWRADYFDKATDQAPTRSVIIEAERESDALDKARAEMRSACSRPELIRIDFNSSATTQ
Ga0075017_1010938752	3300006059	Watersheds	MPRWRADYFDNPKENAPSRSEIIVAENESDALDQARSKMDSVCSRAEVIRLEVSANPPSLAA*
Ga0075019_101475261	3300006086	Watersheds	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPESLAA*
Ga0075030_1006781371	3300006162	Watersheds	MPTWRADYFDKARDHAPTRSVIIEAEYESDALDEARAKMGSACFRTEVIRIDLNNSSATTH*
Ga0075014_1006361791	3300006174	Watersheds	MPRWRADYFDNPKENAPSRSEIIVAENESDALDHARSKMDSVCSRAEVIRLEVSANPPSLAA*
Ga0075014_1009293112	3300006174	Watersheds	MPTWRADYFDKASDQAPSRSVIIEAEYESDALDEARAKMGSACSRAEVIQLCG*
Ga0075021_108335792	3300006354	Watersheds	MPTWRADYFDKARDHAPTRSVIIEAEYESDALDEARAKMGSACFRTEVIRIDLNSSATTH
Ga0075021_110770731	3300006354	Watersheds	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANRQSLAALGR*
Ga0075433_112578011	3300006852	Populus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0075436_1010976561	3300006914	Populus Rhizosphere	MPTWRADYFDNLRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVT
Ga0105245_127769182	3300009098	Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVFPLEVTAKPQSLAAGSFS*
Ga0114129_105419661	3300009147	Populus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVTANPQSLAA*
Ga0105243_100538134	3300009148	Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGALCSRAEVIPLEVTAKPQSL
Ga0111538_133233171	3300009156	Populus Rhizosphere	MAVDSDSGLGRSATMPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVTANPQSLAA*
Ga0075423_103706892	3300009162	Populus Rhizosphere	MAVDSDSGLGRSATIPTWRADYFDNLRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVAANPQSLAA*
Ga0105242_114691711	3300009176	Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0116218_10324826	3300009522	Peatlands Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAN*
Ga0134128_101447192	3300010373	Terrestrial Soil	MPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLAVTADPQSLAA*
Ga0105239_103070324	3300010375	Corn Rhizosphere	YFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0136449_1025448181	3300010379	Peatlands Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHAARSKMGALCSRAEVIPLEVTASPQSLAA*
Ga0136449_1042650141	3300010379	Peatlands Soil	MPTWRADYFDNPKDNTPSRSEIIVAENESDGLHEARSKMGSPCSRAEVLPLEVTAN
Ga0134126_115156661	3300010396	Terrestrial Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0134122_109119021	3300010400	Terrestrial Soil	MAVDSDSGLGRSATMPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0134121_122581502	3300010401	Terrestrial Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVILLEVTANPQSLAA*
Ga0105246_121669321	3300011119	Miscanthus Rhizosphere	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRTEVIPLEARSSCARHAI
Ga0153922_10548941	3300012181	Attine Ant Fungus Gardens	MPTWRADYFDNPRDKAPSRSEIIVAENLSDALHEARSKMGLLCSRADVIPLEVTAKPQSLAA*
Ga0164298_106622631	3300012955	Soil	MPTWRADYFDNAKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVILLEVTANPQSLAA*
Ga0164303_104828402	3300012957	Soil	MPTWRTDYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0164299_105542511	3300012958	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAAVIPLEVTANPQSLAA*
Ga0164309_108151741	3300012984	Soil	DNPKDNAPSRSEIIVAENESDALHEARINMGSRCSRAEVIPLELTANPQSLAA*
Ga0164307_111058641	3300012987	Soil	MPTWRADYFDNPRDNAPSRSEIIVAENVSDALHEARSKMGALCSRAEVIPLEGTASPQSLAA*
Ga0164305_112588101	3300012989	Soil	WRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0157378_114616681	3300013297	Miscanthus Rhizosphere	NPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0163162_127765042	3300013306	Switchgrass Rhizosphere	SDGGLGRSATMPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA*
Ga0163163_116284452	3300014325	Switchgrass Rhizosphere	MPTWRADYFDNPRDNSPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLLAA*
Ga0132258_110327711	3300015371	Arabidopsis Rhizosphere	MPTWRVDYFDNPRDTAASRSEIIVAENESDALSEARSKMGSLCSRAEVVPLEVTAKPQSLAA*
Ga0132258_127760931	3300015371	Arabidopsis Rhizosphere	MPTWRTDYFDNAKDNAPSRSEIFVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLLAA*
Ga0132256_1037375661	3300015372	Arabidopsis Rhizosphere	MPTWRADYFDSPRDNAPSRSEIIVAENESDALHEARSKVGSPCSRAEVIPLEVTAKSLAA
Ga0132257_1029810061	3300015373	Arabidopsis Rhizosphere	MPTWRTDYFDNAKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLLAA*
Ga0132255_1013579891	3300015374	Arabidopsis Rhizosphere	MPTWRADYFDNSRDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTGNPRSLAA*
Ga0132255_1030111401	3300015374	Arabidopsis Rhizosphere	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVILLEFTANPQSLAA*
Ga0187802_100479832	3300017822	Freshwater Sediment	MPTWRADYFHNPKDEAPSRSEIIVAENESDALHEARSKMGSVCSRAEVIRVEVIHTVESPLAA
Ga0187802_101841341	3300017822	Freshwater Sediment	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAN
Ga0187802_102001751	3300017822	Freshwater Sediment	MPRWRADYFDNPKDDAPSRSEVIVADNESDALDQARSKMDSVCCRAEVIRLEVSANSPSLAA
Ga0187820_12852291	3300017924	Freshwater Sediment	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTAKPQSLAA
Ga0187820_13229351	3300017924	Freshwater Sediment	MPTWRADYFHNPKDEAPSRSEIIVAENESDALHEARSKMGSVCSRAEVIRVE
Ga0187819_106502761	3300017943	Freshwater Sediment	TMPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTAN
Ga0187817_106654342	3300017955	Freshwater Sediment	MPTWRADYFDNPRDEAPSRSEIIVAENESDALHNARSKMGSVCSRAEVSRVEVTHKVESPLAA
Ga0187817_107215951	3300017955	Freshwater Sediment	MPRWRADYFDNPKDNAPSRSEIIVAENESDALDQARSKMDSVCWRAEVIRLEVSPPSLAA
Ga0187816_103125942	3300017995	Freshwater Sediment	MPTWRADYFDNPRDEAPSRSEIIVAENESDALHNARSKMGSVCSRAEVIRVGVTHKVESPLAA
Ga0210403_103009533	3300020580	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0210399_109816791	3300020581	Soil	NPRDNAPSRSEIIVAENESDALHEARSKMGALCSRAEVIPLEGTASPQSLAA
Ga0210395_106432502	3300020582	Soil	MPTWRADYFDKSGDPAPARSVILDAESESDALDEVRAKMGSACTRAELIRIDYNSSTTPH
Ga0210395_106562311	3300020582	Soil	MPTWRADYFDNSKDSAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTRL
Ga0210395_110191071	3300020582	Soil	KFLIAALKNQELIMPTWRADYFDKARDRAPTRSVIIKAEYETDALDEARAKMGSACSAEVIRINISSGATTH
Ga0210401_106265261	3300020583	Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGALCSRAEVIPLEGTASPQSLAA
Ga0210401_110283231	3300020583	Soil	DNPGDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEAIAKPQSLAA
Ga0210401_114480152	3300020583	Soil	DYFDNSKDSAPSHSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAL
Ga0210404_107885551	3300021088	Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCARAEVILLEVTANPQSLAA
Ga0210400_110517781	3300021170	Soil	MAVELDGGLGRSATMPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAN
Ga0210408_101561543	3300021178	Soil	MPTWRADYFDNPKDNAPSRCEIIVAENQSDALHEARSKMGSRCSRAEVIPLEVTANPQSLAA
Ga0210408_110736761	3300021178	Soil	MPTWRADYFDKARDQAPTRSLIIEAAHESDALDKARAEMRSACSRAEVIRIDFNSSATTH
Ga0210396_103353941	3300021180	Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARGKMGSLCSRAEVIPLEAIAKPQSLAA
Ga0210388_104277742	3300021181	Soil	VAVDLDGGLGRSATMPTWRADYFDNPRDNAASRSEIIVAENESDALDEARSKMGSLCSRAEVTPLEVTANPQSLAA
Ga0213872_103352642	3300021361	Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALREARSKMRALCSRAEVIPLEVTANPQSLAA
Ga0210385_115127652	3300021402	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRVEVIPLEVTANPQSLAA
Ga0210387_117206742	3300021405	Soil	MPTWRADYFDNPRDNAASRSEIIVAENESDALDEARSKMGSLCSRAEVTPLEVTANPQSLAA
Ga0210386_106692522	3300021406	Soil	MPTWRADYFDNSKDGAPSRSEIIVAENESDALHEARSKMGSPCSRTEVIPLEVTGL
Ga0210383_112085041	3300021407	Soil	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEAIAKPQSLAA
Ga0210383_112109021	3300021407	Soil	MPTWRADYFDNPRDNAASRSEIIVAENESDALDEARSKMGSLCSRAEVTPLEVTANTQSL
Ga0210384_106670681	3300021432	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVNAN
Ga0210390_109569611	3300021474	Soil	MPTWRADYFDNPRDSCPSRSEIIVAENESDALHEARSQMGSPCSRGEVIPL
Ga0210390_115004661	3300021474	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHKARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0210392_110651611	3300021475	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANP
Ga0210392_110949371	3300021475	Soil	PKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTENPQSLAA
Ga0242664_10669291	3300022527	Soil	MPTWRADYFDNPKDNAPSRSEIVVAENESDALHEARNKMGSLCSRAEVIPLEVTANPQSLAA
Ga0212123_100930931	3300022557	Iron-Sulfur Acid Spring	MPTWRADYFDNARDQAPTLSVIIKAENESDALDEARARMGSTCSRAEVIWLDPNPRVMAH
Ga0212123_103951472	3300022557	Iron-Sulfur Acid Spring	MPIWRADYFDKARDQAPTRSVIMEAEYESDALDEARAKMGSACSRAEVIRLEPKPSTTTH
Ga0212123_107082551	3300022557	Iron-Sulfur Acid Spring	MPTWRADYFDKARDQTPTHSVIIEAEYESDALDEARAKMGSACCRAEVTRIDLNSSATIH
Ga0207699_112675181	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGTLCSRAEVIPLAVTADPQSLAA
Ga0207663_104050452	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVILLEVTANPQSLAA
Ga0207687_118097421	3300025927	Miscanthus Rhizosphere	FDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0207706_101862012	3300025933	Corn Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0207686_103498222	3300025934	Miscanthus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIILAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0209732_10709871	3300027117	Forest Soil	MPTWRADYFDNPKDSAPSRSEIIVAENESDALHEARNKMGSLCSRAEVIPLEVTANPQSHCALPMKSPL
Ga0209525_11048532	3300027575	Forest Soil	DYFDNSKDSAPSRSEIIVAENESDALHEAHSKMGSPCSRAEVIPLEVTGL
Ga0209447_100657683	3300027701	Bog Forest Soil	MPTWRADYFDKARDHAPTRSVIIEAEYESDALDEARAKMGSACFRTEVIRIDLNNSSATT
Ga0209814_105641291	3300027873	Populus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVMPLEVTGNPQSLAA
Ga0209624_102527302	3300027895	Forest Soil	MPTWRADYSDNSKDSAPSRSEIIVAENESDALHEAHSKMGSPCSRAEVIPLEVTGL
Ga0209006_103067842	3300027908	Forest Soil	MPTWRADYFDNSKDSAPSRSEIIVAENESDALHEAHSKMGSPCSRAEVIPLEVTGL
Ga0209382_113661271	3300027909	Populus Rhizosphere	MPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTA
Ga0209526_104529251	3300028047	Forest Soil	MAVELDGGLGRSATMPTWRADYFDNPRDNAPSRSEIIVAENESDALHEARSKMGSPCSRAGVIPLEVNAN
Ga0170823_141996801	3300031128	Forest Soil	MPTWRADYFDNPRDSAPSRSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTDN
Ga0310686_1115106071	3300031708	Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCPRAEVIPLEVTANP
Ga0310686_1130967352	3300031708	Soil	MPTWRADYFDKARDRAPTRSVIIKAEYETDALDEARAKMGSACSAEVIRINISSGATTH
Ga0310686_1156748492	3300031708	Soil	MPRWRADYFDNPKENAPSRSEIIVAENESDALDQARSKMDSVCSRAEVIRLEVSAN
Ga0310686_1184751561	3300031708	Soil	MPTWRADYFDNPRDNAPSCSEIIVAENESDALHEARSKMGSLCSRAEVIPLELTANPQSLAA
Ga0307474_102310211	3300031718	Hardwood Forest Soil	MLTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0307474_103768372	3300031718	Hardwood Forest Soil	MPTWRADYFHNPKEEAPSRSEIIVAENESDALHEARSKMGSVCSRAEVIRVEVIHTVESPLAA
Ga0307475_114512302	3300031754	Hardwood Forest Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAAVIPLEVT
Ga0307479_112130952	3300031962	Hardwood Forest Soil	FDNPRDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEVTANPQSLAA
Ga0311301_100576911	3300032160	Peatlands Soil	MPTWRADYFDNPRDNAPARSEIIVAENESDALHEARSKMGSPCSRAEVIPLEVTAN
Ga0307471_1012936731	3300032180	Hardwood Forest Soil	MPTWRADYFDNPKDNAPSRSEIIVAENESDALHEARSKMGSLCSRAEVIPLEAIAKPQSLAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073877

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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