Metagenome / Metatranscriptome Family F073873

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073873
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	44 residues
Representative Sequence	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVL
Number of Associated Samples	95
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.44 %
% of genes near scaffold ends (potentially truncated)	97.50 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (44.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.13% β-sheet: 14.08% Coil/Unstructured: 64.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF08447	PAS_3	28.33
PF00158	Sigma54_activat	1.67
PF12833	HTH_18	1.67
PF01590	GAF	1.67
PF00465	Fe-ADH	1.67
PF13191	AAA_16	0.83
PF08448	PAS_4	0.83
PF13561	adh_short_C2	0.83
PF00196	GerE	0.83
PF13188	PAS_8	0.83
PF13426	PAS_9	0.83
PF07724	AAA_2	0.83
PF14417	MEDS	0.83
PF13472	Lipase_GDSL_2	0.83
PF00069	Pkinase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.33
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	1.67
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	1.67
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	1.67
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	1.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.17 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7.50 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.83 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.33 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	4.17 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.50 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.83 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.83 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.83 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.33 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	4.17 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	4.17 %
Alloacidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium	3.33 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.50 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	4.17 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	3.33 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2.50 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	4.17 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	3.33 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	2.50 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	4.17 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	3.33 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	2.50 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01C6ZGI	Not Available	544	Open in IMG/M
3300000955\|JGI1027J12803_100059733	Not Available	718	Open in IMG/M
3300001593\|JGI12635J15846_10663010	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300002245\|JGIcombinedJ26739_101510957	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300002245\|JGIcombinedJ26739_101533052	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300002907\|JGI25613J43889_10032612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1475	Open in IMG/M
3300002907\|JGI25613J43889_10097985	Not Available	764	Open in IMG/M
3300002914\|JGI25617J43924_10306887	Not Available	547	Open in IMG/M
3300004080\|Ga0062385_10602411	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300004082\|Ga0062384_100930024	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300004091\|Ga0062387_101435696	Not Available	551	Open in IMG/M
3300004635\|Ga0062388_101944264	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300004635\|Ga0062388_101959654	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005445\|Ga0070708_101895224	Not Available	553	Open in IMG/M
3300005536\|Ga0070697_101020446	Not Available	736	Open in IMG/M
3300005578\|Ga0068854_101473600	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300005719\|Ga0068861_102249524	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005921\|Ga0070766_10529040	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300006059\|Ga0075017_100678362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300006174\|Ga0075014_100733363	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300006176\|Ga0070765_100479196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1168	Open in IMG/M
3300006854\|Ga0075425_101906108	Not Available	666	Open in IMG/M
3300006914\|Ga0075436_100583357	Not Available	823	Open in IMG/M
3300007258\|Ga0099793_10081573	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1476	Open in IMG/M
3300007258\|Ga0099793_10223668	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300007258\|Ga0099793_10639971	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300007265\|Ga0099794_10471538	Not Available	659	Open in IMG/M
3300009038\|Ga0099829_10866732	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	749	Open in IMG/M
3300009089\|Ga0099828_11159648	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300009143\|Ga0099792_10265393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1005	Open in IMG/M
3300009176\|Ga0105242_10633290	Not Available	1038	Open in IMG/M
3300009177\|Ga0105248_10029049	All Organisms → cellular organisms → Bacteria	6165	Open in IMG/M
3300010159\|Ga0099796_10110722	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300011270\|Ga0137391_10686544	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300011270\|Ga0137391_10772503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	793	Open in IMG/M
3300011270\|Ga0137391_11455580	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300011271\|Ga0137393_11050693	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300011271\|Ga0137393_11235306	Not Available	634	Open in IMG/M
3300011271\|Ga0137393_11320464	Not Available	610	Open in IMG/M
3300012096\|Ga0137389_10619690	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012096\|Ga0137389_10716350	Not Available	860	Open in IMG/M
3300012189\|Ga0137388_11807448	Not Available	543	Open in IMG/M
3300012199\|Ga0137383_11362261	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300012202\|Ga0137363_11395384	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300012202\|Ga0137363_11748431	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012203\|Ga0137399_11346634	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012205\|Ga0137362_11431978	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300012209\|Ga0137379_11249554	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300012210\|Ga0137378_10267491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1591	Open in IMG/M
3300012210\|Ga0137378_10832003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	836	Open in IMG/M
3300012357\|Ga0137384_10045367	All Organisms → cellular organisms → Bacteria	3631	Open in IMG/M
3300012361\|Ga0137360_10838831	Not Available	791	Open in IMG/M
3300012363\|Ga0137390_11726350	Not Available	560	Open in IMG/M
3300012532\|Ga0137373_10983911	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300012582\|Ga0137358_10091427	Not Available	2057	Open in IMG/M
3300012582\|Ga0137358_10142711	Not Available	1629	Open in IMG/M
3300012582\|Ga0137358_10933122	Not Available	567	Open in IMG/M
3300012683\|Ga0137398_10589727	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	768	Open in IMG/M
3300012925\|Ga0137419_10742534	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	799	Open in IMG/M
3300012925\|Ga0137419_11642182	Not Available	547	Open in IMG/M
3300012927\|Ga0137416_11795548	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012929\|Ga0137404_11906523	Not Available	553	Open in IMG/M
3300012944\|Ga0137410_12130457	Not Available	500	Open in IMG/M
3300014969\|Ga0157376_12831941	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300015052\|Ga0137411_1325636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3328	Open in IMG/M
3300015053\|Ga0137405_1316528	All Organisms → cellular organisms → Bacteria	2965	Open in IMG/M
3300015054\|Ga0137420_1076498	Not Available	1000	Open in IMG/M
3300015245\|Ga0137409_11397976	Not Available	545	Open in IMG/M
3300015264\|Ga0137403_10166969	Not Available	2155	Open in IMG/M
3300019881\|Ga0193707_1109929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	814	Open in IMG/M
3300019887\|Ga0193729_1022522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2722	Open in IMG/M
3300019887\|Ga0193729_1116500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	999	Open in IMG/M
3300020199\|Ga0179592_10308955	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300020579\|Ga0210407_10383050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1100	Open in IMG/M
3300020579\|Ga0210407_11294077	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300020581\|Ga0210399_10641250	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300020582\|Ga0210395_10860320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	675	Open in IMG/M
3300020583\|Ga0210401_11562807	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300021168\|Ga0210406_10598020	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300021168\|Ga0210406_10717044	Not Available	769	Open in IMG/M
3300021170\|Ga0210400_10112563	Not Available	2165	Open in IMG/M
3300021180\|Ga0210396_11683677	Not Available	516	Open in IMG/M
3300021404\|Ga0210389_10025403	All Organisms → cellular organisms → Bacteria	4567	Open in IMG/M
3300021405\|Ga0210387_10540253	All Organisms → cellular organisms → Bacteria → Acidobacteria	1036	Open in IMG/M
3300021407\|Ga0210383_10074384	All Organisms → cellular organisms → Bacteria	2841	Open in IMG/M
3300021433\|Ga0210391_10168060	All Organisms → cellular organisms → Bacteria → Acidobacteria	1727	Open in IMG/M
3300021478\|Ga0210402_10946936	Not Available	788	Open in IMG/M
3300021478\|Ga0210402_11578419	Not Available	583	Open in IMG/M
3300024325\|Ga0247678_1048602	Not Available	684	Open in IMG/M
3300025916\|Ga0207663_10354509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1111	Open in IMG/M
3300025916\|Ga0207663_10454012	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300025938\|Ga0207704_10245563	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300026351\|Ga0257170_1047969	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300026374\|Ga0257146_1022345	Not Available	1028	Open in IMG/M
3300026446\|Ga0257178_1031215	Not Available	663	Open in IMG/M
3300026446\|Ga0257178_1046202	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	564	Open in IMG/M
3300026490\|Ga0257153_1066436	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300026497\|Ga0257164_1008656	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1255	Open in IMG/M
3300026498\|Ga0257156_1095075	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300026551\|Ga0209648_10528530	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300026551\|Ga0209648_10693230	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300026557\|Ga0179587_10830510	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300027643\|Ga0209076_1119056	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300027671\|Ga0209588_1067074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1159	Open in IMG/M
3300027737\|Ga0209038_10060949	Not Available	1130	Open in IMG/M
3300027767\|Ga0209655_10213245	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300027829\|Ga0209773_10094614	Not Available	1230	Open in IMG/M
3300027889\|Ga0209380_10572502	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300028381\|Ga0268264_10028102	All Organisms → cellular organisms → Bacteria	4600	Open in IMG/M
3300029636\|Ga0222749_10336196	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300031128\|Ga0170823_15009981	Not Available	746	Open in IMG/M
3300031715\|Ga0307476_10849355	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031720\|Ga0307469_10644995	Not Available	953	Open in IMG/M
3300031720\|Ga0307469_10949986	Not Available	799	Open in IMG/M
3300031823\|Ga0307478_10343138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1229	Open in IMG/M
3300031823\|Ga0307478_11771201	Not Available	508	Open in IMG/M
3300031962\|Ga0307479_11124174	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300032180\|Ga0307471_101122939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	951	Open in IMG/M
3300032180\|Ga0307471_102068501	Not Available	715	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.50%
Host-Associated	Host-Associated	7.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.17%
Aquatic	Environmental → Aquatic	8.33%
Plants	Host-Associated → Plants	7.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.17%
Freshwater	Environmental → Aquatic → Freshwater	6.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.33%
Sediment	Environmental → Aquatic → Sediment	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.83%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_5942610	2035918004	Soil	MLRITRTANGQVVFKVSGQLTAENVAEMATLIAAEG
JGI1027J12803_1000597331	3300000955	Soil	MLRITREANGEVVFKVSGQLTGGNVAEMETLIAAETKGR
JGI12635J15846_106630101	3300001593	Forest Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCADLRSVD
JGIcombinedJ26739_1015109572	3300002245	Forest Soil	MLRITRKANGEIAFKVSGQLDAENVAEIASVIGAEEKGS
JGIcombinedJ26739_1015330521	3300002245	Forest Soil	MLRITREGNGEVVLKVSGQVTAENVAEIQAAIAAERNGGRIV
JGI25613J43889_100326121	3300002907	Grasslands Soil	MLRITRKANGAVVFKVSGQLTAENVAEMETLIAAETKGRRIVLDCTDLRS
JGI25613J43889_100979851	3300002907	Grasslands Soil	MLRITRKANGEVVFKVSGQLNVENVAEMETLIAAETKGRRIV
JGI25617J43924_103068872	3300002914	Grasslands Soil	MLRITRKADGEVVFKVSGQLIGENVAEMEALIAAETKGRRI
Ga0062385_106024112	3300004080	Bog Forest Soil	MLRITRNANGEVLFKVSGELDAENVAEIEAVISAEKKGTRIVLD
Ga0062384_1009300241	3300004082	Bog Forest Soil	MLRITRNVNGEVVFKVSGQLTGENVAEMEALIGAERNGKRIVLDCTDLRS
Ga0062387_1014356961	3300004091	Bog Forest Soil	MLRITRHANGEVLFKVSGQLNGENVAEMEALIGAERNGKR
Ga0062388_1019442642	3300004635	Bog Forest Soil	MLRITRNVNGEVVFKVSGQLTGENVAEMEALIGAERNGKRIVLDCTD
Ga0062388_1019596542	3300004635	Bog Forest Soil	MVVMSRNPMLRITRKANGEVVFKVSGELTGENVAEIGTLIEAEKKG
Ga0070708_1018952241	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKVNGEVVFKVSGQLTAENVTEMETLIAAETKGRRIVLDCADLR
Ga0070697_1010204461	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAAETKGRRIVL
Ga0068854_1014736001	3300005578	Corn Rhizosphere	MLRITRKANGEVVFKVSGQLTAENVTEMERLLAAETNGRRIVLDC
Ga0068861_1022495242	3300005719	Switchgrass Rhizosphere	MLRITRKANGEVVFKVSGQLNAGNVAEMETLIAAETKGRRIVLDCTDLRSVDG
Ga0070766_105290402	3300005921	Soil	LRSEMTPMRNQMLRITRKANGEVFFKVSGQLNAENVAEMEALIAAEGKGRRIVL
Ga0075017_1006783622	3300006059	Watersheds	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESKGSRI
Ga0075014_1007333631	3300006174	Watersheds	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAET
Ga0070765_1004791962	3300006176	Soil	MLRITRKANREVVFGEVVFKVSGQLTAENVTEIETLIAAET
Ga0075425_1019061081	3300006854	Populus Rhizosphere	MLRITRKANGEVVFKISGRLTAENVTEMEALIAAERNGRRIVLD
Ga0075436_1005833572	3300006914	Populus Rhizosphere	MLRITRKANGEVVFKVSGQLIAENVAEMQTLIAAETNGRRIVLDCT
Ga0099793_100815731	3300007258	Vadose Zone Soil	MSTRSQMLRITRKANGEVVFRVSGQLTAENVTEMVALIA
Ga0099793_102236682	3300007258	Vadose Zone Soil	MSTRSQMLRITRKANGEVVFRVSGQLTAENVTEMVALIAA
Ga0099793_106399712	3300007258	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGR
Ga0099794_104715382	3300007265	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAAE
Ga0099829_108667321	3300009038	Vadose Zone Soil	MLRITKNANGEVALSVSGQLNAENVAELETLIAAEGKGRRIV
Ga0099828_111596482	3300009089	Vadose Zone Soil	MLRITRKANGEVVFKVSGQINAENVAEIGTLIEAEKNGRRIV
Ga0099792_102653931	3300009143	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMGTLIEAEKKGSGIVLDLTD
Ga0105242_106332902	3300009176	Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLNAGNVAEMETLIAAETKGRRIVLD
Ga0105248_100290491	3300009177	Switchgrass Rhizosphere	MLRITRKANGEVVFKVSGQLNAGNVAEMETLIAAETK
Ga0099796_101107223	3300010159	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKKGSR
Ga0137391_106865441	3300011270	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETK
Ga0137391_107725032	3300011270	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAE
Ga0137391_114555801	3300011270	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKKGSRIVLD
Ga0137393_110506932	3300011271	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESKGSRIVL
Ga0137393_112353061	3300011271	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVL
Ga0137393_113204641	3300011271	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAAKVAEMETIIAAETKGSRIDLDCTDLRSADSE
Ga0137389_106196901	3300012096	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESKGSRIVLDCTDLRS
Ga0137389_107163501	3300012096	Vadose Zone Soil	MQVVIATRNQMLRITRKANGEVVFKVSGQLNAENVAEIGTLIQAEKKGSRIVLDL
Ga0137388_118074482	3300012189	Vadose Zone Soil	MLRITRKANGEVVLKVSGQLNAENVAEVRALIAAEKKGSRIVLDL
Ga0137383_113622611	3300012199	Vadose Zone Soil	MLRITRKANGEVVFKISGQLNAENVAEVRALIAAESK
Ga0137363_113953841	3300012202	Vadose Zone Soil	MATREQMLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCTDLR
Ga0137363_117484312	3300012202	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCTDL
Ga0137399_113466341	3300012203	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKGRRIVLDCTDLRSV
Ga0137362_114319782	3300012205	Vadose Zone Soil	MLRITRKANGEVVFRVSGQLNAENVAEVRALIAAET
Ga0137379_112495542	3300012209	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESKGS
Ga0137378_102674912	3300012210	Vadose Zone Soil	MLRITRKANGEVVFKISGQLNAENVAEVRALIAAESKGSRIVLDC
Ga0137378_108320032	3300012210	Vadose Zone Soil	MQVVIATRNQMLRITRKANGAVVFKVSGQLTAENVAEVRALIAAEKKGSRIVLDLTDLR
Ga0137384_100453672	3300012357	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALVAAESK
Ga0137360_108388312	3300012361	Vadose Zone Soil	MLRITRKANGEVVFRVSGQLTAENVPEMETLIAAETKG
Ga0137390_117263501	3300012363	Vadose Zone Soil	MLRITRKAGGEVVFKVSGQLIGENVAEMEALIAAETKG
Ga0137373_109839111	3300012532	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLRAENVAEMETLIAAETKGRRIVLDCTDLRSVDGE
Ga0137358_100914272	3300012582	Vadose Zone Soil	MLRITRKADGEVVFKVSGQLIGENVAEMEALIAAE
Ga0137358_101427111	3300012582	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLDAENVAEIGTLIEAEKKGSRVVL
Ga0137358_109331221	3300012582	Vadose Zone Soil	MLRITRKADGEVVFKVSGQLIGENVAEMESLLAAETKGRRIVLDCAD
Ga0137398_105897272	3300012683	Vadose Zone Soil	MLRITRKANGEVVLKISGQLNAENVAEVRALIAAES
Ga0137419_107425342	3300012925	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRI
Ga0137419_116421821	3300012925	Vadose Zone Soil	MATRSQMLRITRKGNGEVVFKVSGQLNAENVAEMETLFA
Ga0137416_117955482	3300012927	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCA
Ga0137404_119065231	3300012929	Vadose Zone Soil	MLRITRKANGEVVFNVSGQLTAENVTEMETLIAAETKGRRIV
Ga0137410_121304571	3300012944	Vadose Zone Soil	MGSQMLRITRKANGEVVFKVSGQLTAENVAEMETLIAAETKGR
Ga0157376_128319411	3300014969	Miscanthus Rhizosphere	MLRITRSANGEVVFRISGQLTTHNVTQMQTLIAAEAKGRGIVLDCTDLRSVD
Ga0137411_13256366	3300015052	Vadose Zone Soil	MLRITRTANGEVVFKVSGQLNAENVAEIGTLIEAEKNGVVLSST*
Ga0137405_13165286	3300015053	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIGAEKKEAALSSN*
Ga0137420_10764981	3300015054	Vadose Zone Soil	MLRITRKADGEVVFKVSGQLIGENVAEMEALIAVAAE
Ga0137409_113979761	3300015245	Vadose Zone Soil	MLRITRKANGGVVFKVSGQLNAENVAEIGTLIEAEKKG
Ga0137403_101669691	3300015264	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLRAENVAEMETLIAAETKGRRIVLDCT
Ga0193707_11099291	3300019881	Soil	MIATRNQMLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRI
Ga0193729_10225224	3300019887	Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKDRRIVLD
Ga0193729_11165002	3300019887	Soil	MIATRNQMLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKDRRIV
Ga0179592_103089551	3300020199	Vadose Zone Soil	MLRITRKANGEVVFRVSGQLTAENVTEMVALIAAET
Ga0210407_103830501	3300020579	Soil	MLRITRKVNGEVVFKVSGQLSAENVAEIETLIAAETTGRQIV
Ga0210407_112940771	3300020579	Soil	MLRITRKENGEVVFKVSGQLNAENVAEMKTLIAEEANVSRIVFNLKDLTSV
Ga0210399_106412502	3300020581	Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKKG
Ga0210395_108603202	3300020582	Soil	MLRITREANGEAVYKVSGQLTAENVAEIETLIAAET
Ga0210401_115628072	3300020583	Soil	MLRITRKANGEIAFKVSGQLDAENVAEIASLIGAEEKGS
Ga0210406_105980202	3300021168	Soil	MLRITRKVNGEVVFKVSGQLSAENVAEMESLIAAESKGRRIVLDCTDLRSVDGE
Ga0210406_107170441	3300021168	Soil	MLRITRKANREVVFKVSGQLTAENVTEIETLIAAETKGRRIVL
Ga0210400_101125631	3300021170	Soil	MLRITRKVNGEVVFKVSGQLTEENVAEVEAVIAAERKGKRIVLDCA
Ga0210396_116836772	3300021180	Soil	MLRITRKANGGVVFKVSGQLTEENVEEMQALIAAEGKSRRIVLDCTDLRSVD
Ga0210389_100254033	3300021404	Soil	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAAETNGRRIVLD
Ga0210387_105402531	3300021405	Soil	MLRITRKANGEVVFIVSGQLTAENVTEMETLIAAETSG
Ga0210383_100743843	3300021407	Soil	MLRITRKANGEVVFKVSGQLTAENVTEMETLIAAEGKGRRIVLDCTDLR
Ga0210391_101680602	3300021433	Soil	MLRITRKANGEVVFKVSGQLNAENVAEMEALIAAERKDRRI
Ga0210402_109469362	3300021478	Soil	MLRITRDANGEAVFRVSGQLTGENAAEMEALIAAEGKGRRI
Ga0210402_115784192	3300021478	Soil	MLRITRKVNGEVVFKVSGQLTAENVTEMEALIGAETKDRRIVLDCTDLRSVDGE
Ga0247678_10486022	3300024325	Soil	MLRITRKANGKVVFGEVVFKVSGQLTAENVAEIGTLIEAEKKESRIVLDLTDLRSVD
Ga0137417_15025871	3300024330	Vadose Zone Soil	MLRITESVNGEVVFKISGQLTAENISEMESLIAAETKGRELSWTVQI
Ga0207663_103545091	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLTSENVAEMETLIAAERKGRPIVL
Ga0207663_104540121	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLNAENVAEMEALIAAETKGRR
Ga0207704_102455632	3300025938	Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLNAGNVAEMETLIAAETKGRRIVLDC
Ga0257170_10479691	3300026351	Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIQAEKKGSRI
Ga0257146_10223451	3300026374	Soil	MEVVIATRNQMLRITRKANGEVAFKVSGQLNAENVAEIGTLIEAEKKGSRIVLD
Ga0257178_10312151	3300026446	Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIQAE
Ga0257178_10462021	3300026446	Soil	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAAETKGRRIVLDC
Ga0257153_10664361	3300026490	Soil	VIATREQMLRITRKANGEVVFKVSGQLTAANVAELETLIATETEGRRIVLDCTD
Ga0257164_10086563	3300026497	Soil	MLRITRKANGEVVFKVSGQINAENVAEIGTLIEAEKNGR
Ga0257156_10950751	3300026498	Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKG
Ga0209648_105285301	3300026551	Grasslands Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESK
Ga0209648_106932301	3300026551	Grasslands Soil	MLRITRKANGEVVFKVSGQLTAENVAEMEALIAAERKGKRIVLDC
Ga0179587_108305101	3300026557	Vadose Zone Soil	MLRITRKANGEVIFKVSGQLNAENVAEIGALTEAEKKGSRVVLDLTDLRS
Ga0209076_11190562	3300027643	Vadose Zone Soil	MLRITRKANGEVVFRVSGQLTAENVTEMVALIAAETK
Ga0209588_10670742	3300027671	Vadose Zone Soil	MLRITRKANGEVVLKISGQLNAENVAEVRALIAAESKGRRIVLDCADLRSVDG
Ga0209038_100609492	3300027737	Bog Forest Soil	MLRITRKANGEVVFKVSGQLTGENVAEIGTLIEAEKKGGRIVL
Ga0209655_102132452	3300027767	Bog Forest Soil	MLRITRKANGEVVFKVSGQLTAENVTEIETLMAAESKGKRIVL
Ga0209773_100946141	3300027829	Bog Forest Soil	MLRITRKVNGEVVLKVSGQLISENVAEMDALITAERKGKPIVL
Ga0209380_105725021	3300027889	Soil	LRSEMTPMRNQMLRITRKANGEVFFKVSGQLNAENVAEMEALIAAEGKGRRIV
Ga0268264_100281023	3300028381	Switchgrass Rhizosphere	MLRITRKANGEVVFKVSGQLNAGNVAEMETLIAAETKGR
Ga0222749_103361962	3300029636	Soil	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAAETKGRRIVLDCIDLRSV
Ga0170823_150099811	3300031128	Forest Soil	MLRITRKANREVVFKVSGQLTAENVAVMETLIAAETKSRRIVLDCTD
Ga0307476_108493552	3300031715	Hardwood Forest Soil	MLRITRNANGDVVFKVSGELTGGNVAEMEALIGGERNGIRIVLDCTDLR
Ga0307469_106449953	3300031720	Hardwood Forest Soil	MLRITREANGEVVLKVSGQLNVENVAELESLIAAERKGRRIVLDCTDLRSVD
Ga0307469_109499862	3300031720	Hardwood Forest Soil	MLRITRKANGGVVFKVSGQLTGENVAEMETLIAAEAKGRRIVLDCADLR
Ga0307478_103431381	3300031823	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLTAENVTEMETLIAAETKGRRIVLDCADLRSVDAE
Ga0307478_117712011	3300031823	Hardwood Forest Soil	MLRITRTANGEVLFKVSGQLTAENVAEMEALIAAETKGRRIVLDCAD
Ga0307479_111241741	3300031962	Hardwood Forest Soil	MLRITRKENGEVVFKVSGQLNAKNVAEMKALIAAEARVS
Ga0307471_1011229392	3300032180	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLTGENVPEMETLIAAETKGRR
Ga0307471_1020685012	3300032180	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLNAENVSEVRALIAAETKGRRIVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073873

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences