Basic Information | |
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Family ID | F073872 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 37 residues |
Representative Sequence | TTIATAIADRLVENSEIFLLGGDSLRKSKNPNPPAE |
Number of Associated Samples | 114 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.67 % |
% of genes near scaffold ends (potentially truncated) | 96.67 % |
% of genes from short scaffolds (< 2000 bps) | 96.67 % |
Associated GOLD sequencing projects | 110 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.34 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.500 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (6.667 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.500 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (37.500 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.75% β-sheet: 0.00% Coil/Unstructured: 81.25% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.34 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Watersheds Freshwater Anoxic Lake Water Peatland Bog Forest Soil Bog Peatland Freshwater Sediment Thermal Springs Soil Sediment (Intertidal) Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Bulk Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Permafrost Soil Grasslands Soil Soil Soil Soil Soil Soil Peatland Tropical Peatland Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Bog Biofilm Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Host-Associated Anaerobic Digestor Sludge Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12543J11896_1033631 | 3300000717 | Tropical Forest Soil | IATAIADRLVENSEIFLLGGDSLRKSKNPNPPAE* |
Ga0070732_105178722 | 3300005542 | Surface Soil | TTIAAAIADRLVENSEIFLLGGESLRKAQKSPPPAAA* |
Ga0066707_106473891 | 3300005556 | Soil | ATAIADRLVENSEVFLLGGESLRKPKNPNPPAEKS* |
Ga0068857_1021487591 | 3300005577 | Corn Rhizosphere | ATAIVDRLVENSEILLLGGDSLRKAKNTSTSPTE* |
Ga0070761_106592761 | 3300005591 | Soil | IATAIADRLVENSEIFLLGGDSLRKPNKTPNPPAEES* |
Ga0066903_1061235381 | 3300005764 | Tropical Forest Soil | NTTIATAIADRLVENSEIFLLGGDSLRKGNKNPNPPAAD* |
Ga0074473_106321701 | 3300005830 | Sediment (Intertidal) | ATAIADRLVENSEILLLGGPSLRKPKNSTSPAEG* |
Ga0070717_105668861 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | ILFNTAIADRLVENFEVFLLGGESLRKPKNPNPPAEKSKHGV* |
Ga0075028_1006356673 | 3300006050 | Watersheds | YNTTIATAIADRLVENSEIFLLGGRSLRNPISQEPDSPAV* |
Ga0075029_1007153271 | 3300006052 | Watersheds | TTIATAIADRLVENSEIFMFGGDSLRKPKNPNPPAE* |
Ga0075019_106288662 | 3300006086 | Watersheds | TTIATAIVDRLVENSEIFLLGGDSLRKVKNATTSPAE* |
Ga0075030_1007797641 | 3300006162 | Watersheds | NTTIAAAIADRLVENSEIFLLGGESLRKAQKSPPPAAA* |
Ga0075030_1009810682 | 3300006162 | Watersheds | ATAIVDRLVENSEIFLLGGDSLRKVKNATTSPAE* |
Ga0075030_1014153332 | 3300006162 | Watersheds | IATAIADRLVENSEIFLLAGDSVRKANKNPNPPAE* |
Ga0075014_1007607801 | 3300006174 | Watersheds | IATAIADRLVENSEIFLLGGDSLRKASKNPTSPEE* |
Ga0070765_1004065443 | 3300006176 | Soil | NTTIATAIADRLVENSEIFLLAGESLRKGNKSQPPTE* |
Ga0097621_1009423761 | 3300006237 | Miscanthus Rhizosphere | LFNTTIATAIADRLVENSEIFMFGGDSLRKPKNPNSPAE* |
Ga0075527_101259981 | 3300006640 | Arctic Peat Soil | TIATAIADRLVENSEIFLLGGDSVRKANKNPNPPAE* |
Ga0079218_129445783 | 3300007004 | Agricultural Soil | ATAIADRLVENSEIFLLGGDSLRKANKNPNPPAE* |
Ga0099828_120133202 | 3300009089 | Vadose Zone Soil | YNTTIATAIADRLVENSEIFLLGGESLRKSNKSQPPNES* |
Ga0115026_107841832 | 3300009111 | Wetland | FNTTIATAIADRLVENSEVFLLGGPSLRKPKNPDSPADKQ* |
Ga0066709_1012767891 | 3300009137 | Grasslands Soil | TGATSSNTTIATAIADRLVENSEIFRLGGDSLRKPNKNPNPPAEES* |
Ga0105092_106216741 | 3300009157 | Freshwater Sediment | TTIATAIADRLVENSEIFWLGGDSLRKSKNPNPPAE* |
Ga0105237_112376041 | 3300009545 | Corn Rhizosphere | IATAIADRLVENSEIFLLGGDSLRKAGKNSTSPEE* |
Ga0116103_11791411 | 3300009615 | Peatland | TIATAIADRLVENSEIFLLGGESLRKAQKTQSPAPA* |
Ga0116111_10496901 | 3300009616 | Peatland | TIATAIADRLVENSEIFLLGGDSLRKSKNPNPPAE* |
Ga0116111_11437032 | 3300009616 | Peatland | IATAIADRLVENSEIFLLGGDSLRKANKNPDPPAEP* |
Ga0116129_100030010 | 3300009633 | Peatland | MALWRVFAATIADRLVENSEIFLLGGDSLRKPKNPNPPTEKS* |
Ga0116126_10890323 | 3300009640 | Peatland | TTIAAAIADRLVENSEIFLLGGESLRKAQKSPPPPTS* |
Ga0116226_103121052 | 3300009787 | Host-Associated | MATAFADRLVENSEIFLLGGDSLRKPNKSSSSPEE* |
Ga0134070_101923091 | 3300010301 | Grasslands Soil | IATAIADRLVENSEIFLLGGESLRKAQKNQSPPPA* |
Ga0136653_104532071 | 3300010319 | Anoxic Lake Water | ILHNTTIAAAIVDRLVENSEIFLLGGESLRKAQKNPPPPSS* |
Ga0116242_110544232 | 3300010355 | Anaerobic Digestor Sludge | ILFNTTIATAIADRLVENSQIFLLGGPSIRRPKKEPAED* |
Ga0126370_115742312 | 3300010358 | Tropical Forest Soil | IATAIADRLVENSEIFLLGGDSLRKGNRNPNPPAAE* |
Ga0126378_117599492 | 3300010361 | Tropical Forest Soil | ATAIADRLVENSEIFLLAGDSLRKANKHPDQPAE* |
Ga0126381_1032473131 | 3300010376 | Tropical Forest Soil | ATAIADRLIENSEIFLLGGDSLRKANPKPPNPPAE* |
Ga0134122_124897241 | 3300010400 | Terrestrial Soil | NTTIATAIADRLVENSEIFLLGGESLRKGNNKSNPPAAAE* |
Ga0126350_121475841 | 3300010880 | Boreal Forest Soil | IATAIADRLVENSEIFLLGGDSLRKPKNPNPPAEKS* |
Ga0137363_107845811 | 3300012202 | Vadose Zone Soil | IATAIADRLVENSEIFLLGGDSLRKANKNPDPPA* |
Ga0137379_110834362 | 3300012209 | Vadose Zone Soil | DAWRYRDTIATAIADRLVENSEVFLLGGDSLRKGNKGQPA* |
Ga0137372_111795882 | 3300012350 | Vadose Zone Soil | ATAIADRLVENSEIFLLGGDSLRKPNKNPNPPTEES* |
Ga0137384_108733591 | 3300012357 | Vadose Zone Soil | ATAIADRLVENSEIFLLGGDSLRKTNKNPNPPAEES* |
Ga0163199_11768911 | 3300013092 | Freshwater | ILFNTTIATAIADRLVENSEIYLLGGPSVRKPKRNQLADEE* |
Ga0157375_130314552 | 3300013308 | Miscanthus Rhizosphere | FNTTIATAIADRLVENSEIFLLGGPSRRKPEHNRESSS* |
Ga0120127_100852973 | 3300013503 | Permafrost | LHNTSIATAIVDRLVESSEVFLLAGDSLRKGNKGQPT* |
Ga0181539_12165971 | 3300014151 | Bog | ATAIADRLVENSEVFLLGGESFRKVGKNPSPPAES* |
Ga0181518_101113881 | 3300014156 | Bog | TIATAIVDRLVENSEIFLLGGESLRKAKTPSTPPAE* |
Ga0181521_101178263 | 3300014158 | Bog | GNILHNTTIAAAIVDRLVENSEIFLLGGESLRKAQKNPPPPPA* |
Ga0181530_106730432 | 3300014159 | Bog | TTIATAIADRLVENSEILLLGGDSLRKPKSPNPPKSSSRLR* |
Ga0181538_107173001 | 3300014162 | Bog | TTIATAIADRLVENSEIFLLGGDSLRKGNRTTPPAAE* |
Ga0181522_104425172 | 3300014657 | Bog | TTIATAIADRLVENSEIFLLGGESLRKAQKSSPPAAA* |
Ga0180096_10389822 | 3300014862 | Soil | FNTTIATAIADRLVENSEIFMFGGDSLRKPKNPNPPAE* |
Ga0182035_120520681 | 3300016341 | Soil | TIATAIADRLVENSEIFLLGGDSLRKASKNPTSPDE |
Ga0182032_113647811 | 3300016357 | Soil | IATAIADRLVENSEIFLLGGDSLRKANKHSDPPAE |
Ga0182039_116529971 | 3300016422 | Soil | NTTIATAIADRLVENSEIFLLGGESLRKSNKSQPPNES |
Ga0187825_103037361 | 3300017930 | Freshwater Sediment | LLRLGQYPLQHDAIATAIADRLVENSEIFLLGGESLRKNN |
Ga0187783_106823421 | 3300017970 | Tropical Peatland | TIAAAIADRLVENSEIFLLGGESLRKAQKSPPPAAA |
Ga0187781_105894071 | 3300017972 | Tropical Peatland | NTTIAAAIADRLVENSDILLLGGDSLRRPKNPNPPAEKQ |
Ga0187782_108589882 | 3300017975 | Tropical Peatland | WGNILYNTIATAIADRLVENSEIFLLGRESLRKGNKSQPPTES |
Ga0187860_11359083 | 3300018014 | Peatland | ELIARGIADRLVENSEIFLLGGESLRKAQKNQSPAPS |
Ga0187872_101647501 | 3300018017 | Peatland | TTIAAAIADRLVENSEIFLLGGESLRKAQKSPPPPTS |
Ga0187863_108219682 | 3300018034 | Peatland | IATAIADRLVENSEIFLLGGDSLRKSNRTPHPPVTE |
Ga0187858_104685501 | 3300018057 | Peatland | TIAAAIADRLVENSEIFLLGGESLRKAQKSPPPPTS |
Ga0187769_107914881 | 3300018086 | Tropical Peatland | TIATAIADRLVENSEIFLLGGESLRKNNKSQPPAE |
Ga0187797_17983391 | 3300019284 | Peatland | TTIAAAIADRLVENSEIFLLGGESLRKAQKSPPPAAA |
Ga0213879_101697831 | 3300021439 | Bulk Soil | TIATAIADRLVENSEIFLLGGESVRKSKTSASPAN |
Ga0187846_101267142 | 3300021476 | Biofilm | AAAIADRLVENSEILLLGGDSLRKPSKNPDPPAEQS |
Ga0187846_103823921 | 3300021476 | Biofilm | LFNTTIATAIADRLVENSEIFLLGGPSLRKPKNPDSPADKE |
Ga0213852_11138312 | 3300021858 | Watersheds | LFNTTIADRLVENSEIFLLGGDSLRKSKNPNPPAE |
Ga0209399_101452304 | 3300025157 | Thermal Springs | NTTIATAIADRLVENSEIFLLGGDSLRKTNKNPNPPAD |
Ga0208193_100024710 | 3300025463 | Peatland | MALWRVFAATIADRLVENSEIFLLGGDSLRKPKNPNPPTEKS |
Ga0208188_11107711 | 3300025507 | Peatland | NTTIAAAIVDRLVENSEIFLLGGESLRKAQKNPPPPSS |
Ga0207644_117662342 | 3300025931 | Switchgrass Rhizosphere | TIATAIADRLVENSEIFLLGGESLRKGNNKSNPPAAAE |
Ga0207651_108120022 | 3300025960 | Switchgrass Rhizosphere | TIATAIADRLVENSEIFLLGGDSLRKSRNPNPPAE |
Ga0207648_120646751 | 3300026089 | Miscanthus Rhizosphere | FNTTIATAIADRLVENFEIFLLGGDRLRKAGKNSNPPEE |
Ga0209903_10271541 | 3300026216 | Soil | TIATAIADRLVENSEIFLLGGDSLRKASKNPASPEE |
Ga0208044_11285742 | 3300027625 | Peatlands Soil | TFSSIRTIATAIADRLVENSEIFMFGGDSLRKPKNPNSPAE |
Ga0209420_11746522 | 3300027648 | Forest Soil | ATAIADRIVENSEVLLLGGDSLRKSNRTPHPPASE |
Ga0214474_12987962 | 3300027740 | Soil | FNTTIATAIADRLVENSEIFLLGGPSIRKPKKEPADE |
Ga0209656_104610101 | 3300027812 | Bog Forest Soil | TTIATAIADRLVENSEIFLLGGDSLRKSKNPNPPAE |
Ga0209039_102472802 | 3300027825 | Bog Forest Soil | TTIATAIADRLVENSEIFLLGGESLRKSNKSQPPTES |
Ga0209167_106033271 | 3300027867 | Surface Soil | AIADRLVENSEIFLLGGDSVRKLKHSSPPAEPASK |
Ga0209579_104423731 | 3300027869 | Surface Soil | NTTIAAAIVDRLVENSEIFLLGGESLRKAQKNPPPPSA |
Ga0209465_104485491 | 3300027874 | Tropical Forest Soil | NTTIATAIADRLVENSEIFLLGGESLRKNNKSQPPTD |
Ga0209067_105290352 | 3300027898 | Watersheds | TIATAIVDRLVENSEIFLLGGDSLRKVKNATTSPAE |
Ga0268265_116976793 | 3300028380 | Switchgrass Rhizosphere | NTTIATAIADRLVENSEIFLLGGPSRRKPEHNRESSS |
Ga0302152_102287211 | 3300028572 | Bog | TIATAIADRLVENSEIFLLGGDSLRKASKSGSPEE |
Ga0302279_104434731 | 3300028783 | Bog | TTIATAIADRLVESSEIFLLGGDSLRKSNRTPHPPVTE |
Ga0302221_103376361 | 3300028806 | Palsa | TTIATAIADRLVENSEIFLLGGDSLRKPNKTPNPPAEES |
Ga0302278_104193602 | 3300028866 | Bog | TIATAIADRLVENSEIFLLGGDSLRKASKSSSPEE |
Ga0311352_107156153 | 3300029944 | Palsa | TIATAIVDRLIENSEIFLLGGDSLRKTKSPPTSPAE |
Ga0265324_101795231 | 3300029957 | Rhizosphere | LFNTTIATAIADRLVENSEIFMFGGDSLRKPKNPNPPAE |
Ga0311339_104494961 | 3300029999 | Palsa | TTIATAIADRLVENSEIFLLGGDSLRKASKNPTSPEE |
Ga0311355_117122272 | 3300030580 | Palsa | NTTIAAAIADRLVENSEIFLLGGDSVRKLKHSPPQAE |
Ga0302325_100800671 | 3300031234 | Palsa | TTIATAIADRLVENSEIFLLGGDSLRKPSKNTTSPEE |
Ga0302324_1013656161 | 3300031236 | Palsa | ATAIADRLVENSEIFLLGGDSLRKGNGKPNPPAAQ |
Ga0302324_1035320272 | 3300031236 | Palsa | TIATAIADRLVENSEIFLFGGDSLRKPKNPNPPAE |
Ga0265331_105219871 | 3300031250 | Rhizosphere | IAAAIADRLVENSEIFLLGGESLRKAQKSPPPPAS |
Ga0318541_104865003 | 3300031545 | Soil | NTTIATAIADRLVENSEIFLLGGDSLRKAKKSSPAS |
Ga0318538_105032432 | 3300031546 | Soil | TTIATAIADRLVENSEVFLLGGESLRKPKNPNPPAEKS |
Ga0310686_1104617361 | 3300031708 | Soil | IATAIADRLVENSEIFLLGGDSLRKANKNSSSPEE |
Ga0310686_1180747341 | 3300031708 | Soil | TTIATAIADRLVENSEIFLLGGDSVRKLKHSPPPAE |
Ga0310917_106212263 | 3300031833 | Soil | IATAIADRLVENSEIFLLGGDSLRKANKNSPSPEE |
Ga0306925_117040152 | 3300031890 | Soil | TTIATAIVDRLVENSEILLLGGDSLRKAKNGSTSPAE |
Ga0306921_115883661 | 3300031912 | Soil | IATAIADRLVENSEIFLLGGDSLRKANKNPDPPAE |
Ga0310912_100831511 | 3300031941 | Soil | NTTIATAIADRLVENSEIFLLGGESLRKGNKSQPPTES |
Ga0310910_111140942 | 3300031946 | Soil | ILHNTTIATAIADRLVENSEIILLGGESLRKANKGQPPTE |
Ga0326597_107971492 | 3300031965 | Soil | LHPARITIATAIADRLVENSEIFLLGGDSLRKANKNSPPPEE |
Ga0310911_103807681 | 3300032035 | Soil | NTTIATAIADRLVENSEIFMFGGDSLRKPKNPNQPAE |
Ga0318513_106542662 | 3300032065 | Soil | TIATAIADRLVENSEVFLLGGESFRKAGKNPSPPPAE |
Ga0308173_114190712 | 3300032074 | Soil | FNTTIATAIADRLVENSEIFMFGGDSLRKPKNPTPPAE |
Ga0306924_108487612 | 3300032076 | Soil | TTIATAIADRLVENSEIFLLGGESLRKGNKSQPPTES |
Ga0306920_1026616772 | 3300032261 | Soil | TTIATAIADRLVENSEIFLLGGESLRKSNKSQPPNEP |
Ga0335078_115402882 | 3300032805 | Soil | FNTTIATAIADRLVENSEIFLLGGDSLRKPKNPNPPAQ |
Ga0335071_115659842 | 3300032897 | Soil | TIAAAIADRLVENSEIFLLGGPSLRKPKNPDSPVAKE |
Ga0335083_107561622 | 3300032954 | Soil | IATAIADRLVENSEIFLLGGESLRKANKHSDPPAE |
Ga0335077_118435272 | 3300033158 | Soil | NTTIATAIVDRLVENSEILLLGGDSLRKAKNPSISPAE |
Ga0316601_1012138581 | 3300033419 | Soil | IATAIADRLVENSQVFLLGGPSIRKPRKEQSAAEEE |
Ga0316621_112409621 | 3300033488 | Soil | FNTTIATAIADRLVENSEVFLLGGPSLRKPKNPDSPADKQ |
Ga0314862_0125310_494_610 | 3300033803 | Peatland | TIATAIADRMIENSHVFLLGGPSIRIPKNKSQSPDPAE |
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