Metagenome / Metatranscriptome Family F073848

Basic Information
Family ID	F073848
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	42 residues
Representative Sequence	MFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL
Number of Associated Samples	98
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.67 %
% of genes near scaffold ends (potentially truncated)	38.33 %
% of genes from short scaffolds (< 2000 bps)	85.83 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (55.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.667 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 75.61% β-sheet: 0.00% Coil/Unstructured: 24.39%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01244	Peptidase_M19	29.17
PF04909	Amidohydro_2	16.67
PF03401	TctC	4.17
PF01925	TauE	4.17
PF02627	CMD	3.33
PF00903	Glyoxalase	1.67
PF00067	p450	1.67
PF02586	SRAP	1.67
PF13202	EF-hand_5	1.67
PF01068	DNA_ligase_A_M	1.67
PF00873	ACR_tran	0.83
PF00392	GntR	0.83
PF04977	DivIC	0.83
PF00583	Acetyltransf_1	0.83
PF00400	WD40	0.83
PF13628	DUF4142	0.83
PF01738	DLH	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	29.17
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	4.17
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.17
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	3.33
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	3.33
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.67
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.67
COG2124	Cytochrome P450	Defense mechanisms [V]	1.67
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.67
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.00 %
Unclassified	root	N/A	45.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.00 %
Unclassified	root	N/A	45.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.00 %
Unclassified	root	N/A	45.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.50 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.33 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.50 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.50 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.83 %
Bradyrhizobium hereditatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium hereditatis	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.00 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.67 %
Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1	1.67 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.83 %
Mesorhizobium sp. NBSH29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBSH29	0.83 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.83 %
Bradyrhizobium hereditatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium hereditatis	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02HYPW5	Not Available	502	Open in IMG/M
2170459010\|GIO7OMY02HLXFC	Not Available	509	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2149220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	711	Open in IMG/M
3300001661\|JGI12053J15887_10002413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9166	Open in IMG/M
3300001661\|JGI12053J15887_10056405	All Organisms → cellular organisms → Bacteria	2189	Open in IMG/M
3300001661\|JGI12053J15887_10328299	Not Available	743	Open in IMG/M
3300001661\|JGI12053J15887_10460462	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300002568\|C688J35102_118203818	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300004156\|Ga0062589_101183660	Not Available	730	Open in IMG/M
3300005162\|Ga0066814_10032490	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005164\|Ga0066815_10053552	Not Available	672	Open in IMG/M
3300005185\|Ga0066811_1017579	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005354\|Ga0070675_100069574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2916	Open in IMG/M
3300005354\|Ga0070675_100184790	Not Available	1803	Open in IMG/M
3300005434\|Ga0070709_10725948	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005455\|Ga0070663_100307091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1272	Open in IMG/M
3300005459\|Ga0068867_100177013	Not Available	1693	Open in IMG/M
3300005543\|Ga0070672_100396261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1183	Open in IMG/M
3300005578\|Ga0068854_100830013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	808	Open in IMG/M
3300006038\|Ga0075365_10045219	All Organisms → cellular organisms → Bacteria	2887	Open in IMG/M
3300006038\|Ga0075365_11155876	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006042\|Ga0075368_10379391	Not Available	618	Open in IMG/M
3300006048\|Ga0075363_100274812	Not Available	974	Open in IMG/M
3300006048\|Ga0075363_100706672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1	609	Open in IMG/M
3300006175\|Ga0070712_100616134	Not Available	920	Open in IMG/M
3300006178\|Ga0075367_10062722	Not Available	2221	Open in IMG/M
3300006353\|Ga0075370_10402874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	821	Open in IMG/M
3300006358\|Ga0068871_100914828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	814	Open in IMG/M
3300006573\|Ga0074055_11743699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1954	Open in IMG/M
3300006854\|Ga0075425_101342343	Not Available	810	Open in IMG/M
3300009143\|Ga0099792_11234423	Not Available	508	Open in IMG/M
3300009148\|Ga0105243_10868817	Not Available	895	Open in IMG/M
3300009156\|Ga0111538_12180443	Not Available	696	Open in IMG/M
3300009840\|Ga0126313_10250656	Not Available	1373	Open in IMG/M
3300010147\|Ga0126319_1466505	Not Available	771	Open in IMG/M
3300010371\|Ga0134125_11728767	Not Available	680	Open in IMG/M
3300010375\|Ga0105239_12409277	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300012212\|Ga0150985_111139814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4543	Open in IMG/M
3300012469\|Ga0150984_117022143	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300012469\|Ga0150984_117224416	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012469\|Ga0150984_117359190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NBSH29	2159	Open in IMG/M
3300012469\|Ga0150984_122905207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300012924\|Ga0137413_11107860	Not Available	627	Open in IMG/M
3300012924\|Ga0137413_11159503	Not Available	614	Open in IMG/M
3300012941\|Ga0162652_100003593	Not Available	1574	Open in IMG/M
3300012985\|Ga0164308_11177785	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300013297\|Ga0157378_11690657	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300014968\|Ga0157379_12134640	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300014969\|Ga0157376_11656670	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300015242\|Ga0137412_10706144	Not Available	750	Open in IMG/M
3300015242\|Ga0137412_10789887	Not Available	698	Open in IMG/M
3300015372\|Ga0132256_102648641	Not Available	601	Open in IMG/M
3300017792\|Ga0163161_11179703	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300017997\|Ga0184610_1175658	Not Available	710	Open in IMG/M
3300018028\|Ga0184608_10006673	All Organisms → cellular organisms → Bacteria → Proteobacteria	3781	Open in IMG/M
3300018066\|Ga0184617_1003154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2710	Open in IMG/M
3300018071\|Ga0184618_10198923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
3300018073\|Ga0184624_10108279	Not Available	1194	Open in IMG/M
3300018081\|Ga0184625_10245579	Not Available	938	Open in IMG/M
3300018083\|Ga0184628_10286783	Not Available	865	Open in IMG/M
3300018476\|Ga0190274_11216965	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300018476\|Ga0190274_11420084	Not Available	784	Open in IMG/M
3300019269\|Ga0184644_1120861	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300019269\|Ga0184644_1721105	Not Available	609	Open in IMG/M
3300019889\|Ga0193743_1213713	Not Available	599	Open in IMG/M
3300020016\|Ga0193696_1060382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	995	Open in IMG/M
3300021078\|Ga0210381_10012221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2113	Open in IMG/M
3300021082\|Ga0210380_10200182	Not Available	902	Open in IMG/M
3300021344\|Ga0193719_10342268	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300022915\|Ga0247790_10199747	Not Available	531	Open in IMG/M
3300025899\|Ga0207642_10012043	Not Available	3109	Open in IMG/M
3300025899\|Ga0207642_10198155	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300025900\|Ga0207710_10006666	All Organisms → cellular organisms → Bacteria	4922	Open in IMG/M
3300025918\|Ga0207662_10031156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3098	Open in IMG/M
3300025925\|Ga0207650_10684921	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300025925\|Ga0207650_11573462	Not Available	558	Open in IMG/M
3300025932\|Ga0207690_10347951	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300025937\|Ga0207669_10234829	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300026075\|Ga0207708_10015260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5760	Open in IMG/M
3300027388\|Ga0208995_1026546	Not Available	1009	Open in IMG/M
3300027480\|Ga0208993_1016940	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300027480\|Ga0208993_1018725	Not Available	1212	Open in IMG/M
3300027616\|Ga0209106_1016417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1587	Open in IMG/M
3300027681\|Ga0208991_1079672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	986	Open in IMG/M
3300027681\|Ga0208991_1185587	Not Available	607	Open in IMG/M
3300027738\|Ga0208989_10176752	Not Available	712	Open in IMG/M
3300028379\|Ga0268266_11417132	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300028381\|Ga0268264_10046768	All Organisms → cellular organisms → Bacteria → Proteobacteria	3595	Open in IMG/M
3300028708\|Ga0307295_10089078	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300028710\|Ga0307322_10111068	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300028714\|Ga0307309_10023671	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300028718\|Ga0307307_10144268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300028754\|Ga0307297_10086662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300028754\|Ga0307297_10114933	Not Available	896	Open in IMG/M
3300028755\|Ga0307316_10026202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1885	Open in IMG/M
3300028771\|Ga0307320_10173961	Not Available	838	Open in IMG/M
3300028771\|Ga0307320_10253067	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300028784\|Ga0307282_10662847	Not Available	506	Open in IMG/M
3300028787\|Ga0307323_10097758	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300028787\|Ga0307323_10099565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300028790\|Ga0307283_10052422	Not Available	976	Open in IMG/M
3300028791\|Ga0307290_10184622	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300028793\|Ga0307299_10026025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2113	Open in IMG/M
3300028796\|Ga0307287_10322335	Not Available	583	Open in IMG/M
3300028802\|Ga0307503_10431360	Not Available	695	Open in IMG/M
3300028810\|Ga0307294_10229781	Not Available	651	Open in IMG/M
3300028814\|Ga0307302_10667111	Not Available	517	Open in IMG/M
3300028819\|Ga0307296_10726879	Not Available	542	Open in IMG/M
3300028828\|Ga0307312_10431198	Not Available	867	Open in IMG/M
3300028828\|Ga0307312_10997405	Not Available	554	Open in IMG/M
3300028889\|Ga0247827_10052968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1865	Open in IMG/M
3300031092\|Ga0308204_10043571	Not Available	1060	Open in IMG/M
3300031093\|Ga0308197_10487264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1	502	Open in IMG/M
3300031099\|Ga0308181_1120657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium hereditatis	587	Open in IMG/M
3300031421\|Ga0308194_10251681	Not Available	593	Open in IMG/M
3300031720\|Ga0307469_10848041	Not Available	842	Open in IMG/M
3300031847\|Ga0310907_10143868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1087	Open in IMG/M
3300032180\|Ga0307471_102693731	Not Available	631	Open in IMG/M
3300033550\|Ga0247829_10117524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	2028	Open in IMG/M
3300033550\|Ga0247829_10274999	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.17%
Host-Associated	Host-Associated	30.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.17%
Plants	Host-Associated → Plants	30.83%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.33%
Roots	Host-Associated → Plants → Roots	6.67%
Sediment	Environmental → Aquatic → Sediment	5.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Freshwater	Environmental → Aquatic → Freshwater	4.17%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.00%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.33%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	5.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.33%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.50%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_11004110	2170459003	Grass Soil	MSRPPHVSGTSFRHVASDVLHDLITAILVAVAALTASGLLDRIWDAL
F62_03842000	2170459010	Grass Soil	MDMFPGASRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
ICChiseqgaiiDRAFT_21492201	3300000033	Soil	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL*
JGI12053J15887_100024131	3300001661	Forest Soil	MFLGPFRHLASDVMSDLVIAVLVALAAVIASGLVDRIWDTL*
JGI12053J15887_100564055	3300001661	Forest Soil	MEMFPGPFRHLASDVVNDLVTAFLVALAAVIASSLLDRIWDAL*
JGI12053J15887_103282992	3300001661	Forest Soil	MEMFPGPFRHLASDVVNDLVTAFLVALAAVIASGLLDRIWDAL*
JGI12053J15887_104604623	3300001661	Forest Soil	PSRHFASDVMSDLVIAVLVALAAVIASGLLDRIWDVL*
C688J35102_1182038182	3300002568	Soil	MVRPPMFRTPFRHVASDVLHDLLTAFLVAMAALTASGLLDRIWDAL*
Ga0062589_1011836601	3300004156	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0066814_100324902	3300005162	Soil	MLRIPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0066815_100535521	3300005164	Soil	MFRTPFCHVASDVLHDLITAFLVAVAALTASGLLDRIWDA
Ga0066811_10175791	3300005185	Soil	MFRIPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070675_1000695743	3300005354	Miscanthus Rhizosphere	GMVRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070675_1001847902	3300005354	Miscanthus Rhizosphere	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070709_107259482	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070663_1003070912	3300005455	Corn Rhizosphere	MSRPPMFPTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0068867_1001770131	3300005459	Miscanthus Rhizosphere	MSRPPMFRTRFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070672_1003962612	3300005543	Miscanthus Rhizosphere	MSRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0068854_1008300131	3300005578	Corn Rhizosphere	HVADSMLHDLITAILVAIAAVIASGLLDRIWDAL*
Ga0075365_100452194	3300006038	Populus Endosphere	MSLRPMFRTPFRHVASDVLHDLITAVLVAVAAVIASGLLDRIWDAL*
Ga0075365_111558763	3300006038	Populus Endosphere	TPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0075368_103793912	3300006042	Populus Endosphere	MARPPMFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0075363_1002748122	3300006048	Populus Endosphere	MFLGPFRHLASDVMSDLVIAILVALAAVIASGLLDRIWDVL*
Ga0075363_1007066722	3300006048	Populus Endosphere	MVRPPIFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0070712_1006161341	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIW
Ga0075367_100627222	3300006178	Populus Endosphere	MFRTPFRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL*
Ga0075370_104028742	3300006353	Populus Endosphere	MARPPMFRTPFRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL*
Ga0068871_1009148281	3300006358	Miscanthus Rhizosphere	PPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0074055_117436992	3300006573	Soil	MSRPPMFRTPFRHVASDVLHDLITAFLVAVAVLTASGLLDRIWDAL*
Ga0075425_1013423432	3300006854	Populus Rhizosphere	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL*
Ga0099792_112344231	3300009143	Vadose Zone Soil	MDMFPGSSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL*
Ga0105243_108688172	3300009148	Miscanthus Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTVSGLLDRIWDAL*
Ga0111538_121804432	3300009156	Populus Rhizosphere	MFRTPCRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0126313_102506562	3300009840	Serpentine Soil	MFRTPFRHVASDVLHDLLTAFLVAMAALTASGLLDRIWDAL*
Ga0126319_14665051	3300010147	Soil	MDMFPGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL*
Ga0134125_117287672	3300010371	Terrestrial Soil	MFPTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0105239_124092772	3300010375	Corn Rhizosphere	FRTPFRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL*
Ga0150985_1111398148	3300012212	Avena Fatua Rhizosphere	MTNRHVASDVLHDLITSILVAITAVIASGLLDRVWEAL*
Ga0150984_1170221432	3300012469	Avena Fatua Rhizosphere	MFRTPFRHVASDVLHDLLTAFLVAVGALTASGLLDRIWDAL*
Ga0150984_1172244162	3300012469	Avena Fatua Rhizosphere	PFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL*
Ga0150984_1173591904	3300012469	Avena Fatua Rhizosphere	WRHTASDVLHDLITSILVAITAVIASGLLDRVWDAL*
Ga0150984_1229052072	3300012469	Avena Fatua Rhizosphere	MSALRHTASDVLHDLIIAFLVAIAAVTTSGLLDRVWEAL*
Ga0137413_111078602	3300012924	Vadose Zone Soil	SRHFASDVMSDLVIAVLVALAAVIASGLLDRIWDVL*
Ga0137413_111595031	3300012924	Vadose Zone Soil	MDMFPGASRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL*
Ga0162652_1000035931	3300012941	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDA
Ga0164308_111777851	3300012985	Soil	PFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0157378_116906571	3300013297	Miscanthus Rhizosphere	PMFRTPFRHVASDVLHDLITAFLVSVVAVISYGLINRIWDAL*
Ga0157379_121346402	3300014968	Switchgrass Rhizosphere	FRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL*
Ga0157376_116566701	3300014969	Miscanthus Rhizosphere	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL*
Ga0137412_107061441	3300015242	Vadose Zone Soil	MELFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL*
Ga0137412_107898872	3300015242	Vadose Zone Soil	MDRFTGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL*
Ga0132256_1026486411	3300015372	Arabidopsis Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTASRLLDRIWDAL*
Ga0163161_111797031	3300017792	Switchgrass Rhizosphere	PFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL
Ga0184610_11756582	3300017997	Groundwater Sediment	MDMFPGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0184608_100066734	3300018028	Groundwater Sediment	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL
Ga0184617_10031543	3300018066	Groundwater Sediment	MDMFPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0184618_101989231	3300018071	Groundwater Sediment	MDMFPGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRLWDAL
Ga0184624_101082792	3300018073	Groundwater Sediment	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAR
Ga0184625_102455792	3300018081	Groundwater Sediment	MTRPPMFRTPFRHVASDVLHDLITAVLVAVAALTASGLLDRIWDAL
Ga0184628_102867832	3300018083	Groundwater Sediment	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDR
Ga0190274_112169652	3300018476	Soil	MFRTTFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0190274_114200841	3300018476	Soil	MFRTPCRHVASDVLHDLITAFLVAVAALTASGLLDRIW
Ga0184644_11208611	3300019269	Groundwater Sediment	WFMEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL
Ga0184644_17211051	3300019269	Groundwater Sediment	MSLRPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0193743_12137131	3300019889	Soil	MSRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0193696_10603822	3300020016	Soil	FMDMFPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0210381_100122211	3300021078	Groundwater Sediment	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIATRLLDRIWDAL
Ga0210380_102001821	3300021082	Groundwater Sediment	MSLRPMFRTPFRHVASDVLHDLITAFLVAVAALTAPGLLDRIWDAL
Ga0193719_103422681	3300021344	Soil	RPRFMDMFPGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0247790_101997471	3300022915	Soil	MSRPPMFPTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL
Ga0207642_100120432	3300025899	Miscanthus Rhizosphere	MFRIPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0207642_101981551	3300025899	Miscanthus Rhizosphere	TPFRHVARDVLHDLITAFLVAVAALIASGLLDRIWDAL
Ga0207710_100066667	3300025900	Switchgrass Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWD
Ga0207662_100311563	3300025918	Switchgrass Rhizosphere	SGMSRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0207650_106849212	3300025925	Switchgrass Rhizosphere	PMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0207650_115734622	3300025925	Switchgrass Rhizosphere	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0207690_103479511	3300025932	Corn Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL
Ga0207669_102348292	3300025937	Miscanthus Rhizosphere	FRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0207708_100152601	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MVRPPMFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL
Ga0208995_10265462	3300027388	Forest Soil	MEMFPGPFRHLASDVVNDLVTAFLVALAAVIASGLLDRIWDAL
Ga0208993_10169402	3300027480	Forest Soil	MDMFPGPSRQFASDVMSDLVIAVLVALAAVIASGLLDRIWDVL
Ga0208993_10187253	3300027480	Forest Soil	MLMFLGPFRHLASDVMSDLVIAVLVALAAVIASGLVDRIWDTL
Ga0209106_10164172	3300027616	Forest Soil	MEMFPGPFRHLASDVVNDLVTAFLVALAAVIASSLLDRIWDAL
Ga0208991_10796721	3300027681	Forest Soil	MFLGPFRHLASDVMSDLVIAVLVALAAVIASGLVDRIWDTL
Ga0208991_11855871	3300027681	Forest Soil	MHMFLVPFRHLAGDVVSDLVTAVLVALAAVIASGLLDRIWDAL
Ga0208989_101767522	3300027738	Forest Soil	MHMFLGPFRHLAGDVVSDLVTAVLVALAAVIASGLLDRIWDAL
Ga0268266_114171321	3300028379	Switchgrass Rhizosphere	PIRHVASDVLHDLITAFLVAVAAIIASGLLNRIWDAL
Ga0268264_100467682	3300028381	Switchgrass Rhizosphere	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0307295_100890782	3300028708	Soil	MFRTPFRHVASDVLHDLITAFLVAVGALTASGLLDRIWDAL
Ga0307322_101110682	3300028710	Soil	FRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL
Ga0307309_100236712	3300028714	Soil	MFRTPFRHVASDVLHDLLTAFLVAMAALTASGLLDRIWDAL
Ga0307307_101442681	3300028718	Soil	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIATRLLDR
Ga0307297_100866621	3300028754	Soil	RFMDMFPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0307297_101149332	3300028754	Soil	MFRTPCRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0307316_100262022	3300028755	Soil	MDMFPGASRHFASDVMNDLVIAVLVALAAVIASGLLDRVWDAL
Ga0307320_101739611	3300028771	Soil	FRHLASDVMSDLVIAVLVALAAVIASGLLDRILDVL
Ga0307320_102530671	3300028771	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALTAPGLLDRIWDAL
Ga0307282_106628471	3300028784	Soil	HIFPGPFRHLTGDVVSDLVIAVLVALAAVIASGLLDRIWDAL
Ga0307323_100977582	3300028787	Soil	EGWFMEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL
Ga0307323_100995651	3300028787	Soil	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRLLD
Ga0307283_100524222	3300028790	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALTASGLLD
Ga0307290_101846223	3300028791	Soil	WFVDLFMFLGPFRHLASDVMSDLVIAVLVALAAVIASGLLDRIWDVL
Ga0307299_100260252	3300028793	Soil	MDMFPGPSRHFASDVMDDLVIAVLVALAAVIASGLLDRIWDAL
Ga0307287_103223351	3300028796	Soil	MEMFPGPFRHLASEVLSDLVTAVLVALAAVIASRL
Ga0307503_104313601	3300028802	Soil	MTRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0307294_102297812	3300028810	Soil	MDMFPGPSRHFASNVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0307302_106671112	3300028814	Soil	MEMFPRPFRHLASEVLSDLVTAVLVALAAVIASRLLDRIWDAL
Ga0307296_107268792	3300028819	Soil	SSRHLARDVLNDLVTAVLVSLSAVIASELLERISDGLWGRS
Ga0307312_104311981	3300028828	Soil	MFRTPFRHVASDVLHDLITAFLVAVGALTASGLLDRIWD
Ga0307312_109974051	3300028828	Soil	RPWFMDMFPGPSRHFASDVMNDLVIAVLVALAAVIASGLLDRIWDAL
Ga0247827_100529681	3300028889	Soil	SRPPMFRTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0308204_100435711	3300031092	Soil	MEMFPRPFRHLASDVVNDLVTAFLVALAAIIASGLLNRIWWDAL
Ga0308197_104872642	3300031093	Soil	MSLRPMFRTPFRHVASDVLHDLITAFLVAVATLTASGLLDRIWDAL
Ga0308181_11206572	3300031099	Soil	MDMFPGPSRHFASDVMSDLVIAVLVVLAAVIASGLLDRIWDVL
Ga0308194_102516811	3300031421	Soil	MDMFPGPSRHFASDVMNDLAIAVLVALAAVIASGLLDRIWDAL
Ga0307469_108480412	3300031720	Hardwood Forest Soil	MFRTPFRHVASDVLHDLITAFLVAVAALTASSLLDRIWDAL
Ga0310907_101438682	3300031847	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAL
Ga0307471_1026937311	3300032180	Hardwood Forest Soil	MFRTSCRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0247829_101175241	3300033550	Soil	RTPFRHVASDVLHDLITAFLVAVAALTASGLLDRIWDAL
Ga0247829_102749991	3300033550	Soil	MFRTPFRHVASDVLHDLITAFLVAVAALIASGLLDRIWDAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073848

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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