Metagenome / Metatranscriptome Family F073809

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073809
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	36 residues
Representative Sequence	MLAGAIAAVLLVFALFLSMLSSSPKDDAEWHPDTEA
Number of Associated Samples	87
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.24 %
% of genes near scaffold ends (potentially truncated)	10.00 %
% of genes from short scaffolds (< 2000 bps)	65.83 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (10.833 % of family members)
Environment Ontology (ENVO)	Unclassified (21.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 35.94% β-sheet: 0.00% Coil/Unstructured: 64.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02163	Peptidase_M50	16.67
PF11700	ATG22	5.83
PF13620	CarboxypepD_reg	5.00
PF04264	YceI	5.00
PF07969	Amidohydro_3	4.17
PF01734	Patatin	3.33
PF00216	Bac_DNA_binding	3.33
PF12697	Abhydrolase_6	2.50
PF01628	HrcA	1.67
PF03720	UDPG_MGDP_dh_C	1.67
PF03721	UDPG_MGDP_dh_N	1.67
PF00076	RRM_1	1.67
PF13594	Obsolete Pfam Family	1.67
PF01042	Ribonuc_L-PSP	1.67
PF01431	Peptidase_M13	1.67
PF13483	Lactamase_B_3	1.67
PF00106	adh_short	1.67
PF13468	Glyoxalase_3	0.83
PF01011	PQQ	0.83
PF01638	HxlR	0.83
PF00037	Fer4	0.83
PF02355	SecD_SecF	0.83
PF13450	NAD_binding_8	0.83
PF01613	Flavin_Reduct	0.83
PF12838	Fer4_7	0.83
PF07726	AAA_3	0.83
PF07637	PSD5	0.83
PF01988	VIT1	0.83
PF13231	PMT_2	0.83
PF02641	DUF190	0.83
PF05685	Uma2	0.83
PF03331	LpxC	0.83
PF00378	ECH_1	0.83
PF07724	AAA_2	0.83
PF08502	LeuA_dimer	0.83
PF00535	Glycos_transf_2	0.83
PF12796	Ank_2	0.83
PF11721	Malectin	0.83
PF04542	Sigma70_r2	0.83
PF02602	HEM4	0.83
PF07859	Abhydrolase_3	0.83
PF07626	PSD3	0.83
PF05139	Erythro_esteras	0.83
PF05016	ParE_toxin	0.83
PF13432	TPR_16	0.83
PF00072	Response_reg	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	5.00
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	3.33
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	3.33
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	3.33
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	3.33
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	1.67
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.67
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.67
COG1420	Transcriptional regulator of heat shock response	Transcription [K]	1.67
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.67
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.67
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.83
COG0119	Isopropylmalate/homocitrate/citramalate synthases	Amino acid transport and metabolism [E]	0.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.83
COG2312	Erythromycin esterase homolog	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.83
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.83
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.83
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.83
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	0.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.83
COG0774	UDP-3-O-acyl-N-acetylglucosamine deacetylase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.83
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.83
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.83 %
Unclassified	root	N/A	14.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.83 %
Unclassified	root	N/A	14.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.83 %
Unclassified	root	N/A	14.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.17 %
Unclassified	root	N/A	14.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	26.67 %
Unclassified	root	N/A	14.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	14.17 %
Unclassified	root	N/A	14.17 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.17 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2.50 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.17 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	9.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.67 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.83 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.83 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.17 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	9.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.67 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.83 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.83 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.17 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	9.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.33 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.67 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.83 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.83 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10296796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1013	Open in IMG/M
3300004152\|Ga0062386_101639214	Not Available	536	Open in IMG/M
3300005529\|Ga0070741_10037153	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6451	Open in IMG/M
3300005529\|Ga0070741_10377718	All Organisms → cellular organisms → Bacteria → Acidobacteria	1308	Open in IMG/M
3300005531\|Ga0070738_10001924	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	36062	Open in IMG/M
3300005533\|Ga0070734_10186696	Not Available	1197	Open in IMG/M
3300005538\|Ga0070731_10264757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1141	Open in IMG/M
3300005538\|Ga0070731_10468447	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	838	Open in IMG/M
3300005541\|Ga0070733_10274303	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300005541\|Ga0070733_10329532	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300005542\|Ga0070732_10165088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1320	Open in IMG/M
3300005591\|Ga0070761_10555608	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300005712\|Ga0070764_10186370	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300006028\|Ga0070717_10030405	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4339	Open in IMG/M
3300006028\|Ga0070717_10060736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3131	Open in IMG/M
3300006176\|Ga0070765_100498023	All Organisms → cellular organisms → Bacteria → Acidobacteria	1145	Open in IMG/M
3300006800\|Ga0066660_11470883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300006893\|Ga0073928_10215261	Not Available	1493	Open in IMG/M
3300007258\|Ga0099793_10365339	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300009029\|Ga0066793_10221158	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300009700\|Ga0116217_10660105	Not Available	649	Open in IMG/M
3300009839\|Ga0116223_10471135	Not Available	733	Open in IMG/M
3300010379\|Ga0136449_100189279	All Organisms → cellular organisms → Bacteria	3940	Open in IMG/M
3300010379\|Ga0136449_100368459	All Organisms → cellular organisms → Bacteria	2569	Open in IMG/M
3300010379\|Ga0136449_101338760	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300010379\|Ga0136449_101386921	All Organisms → cellular organisms → Bacteria → Acidobacteria	1086	Open in IMG/M
3300011271\|Ga0137393_10693741	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300012202\|Ga0137363_10116462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2055	Open in IMG/M
3300012930\|Ga0137407_10915556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	829	Open in IMG/M
3300014167\|Ga0181528_10729451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	554	Open in IMG/M
3300014168\|Ga0181534_10643397	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300014169\|Ga0181531_10229824	Not Available	1130	Open in IMG/M
3300014201\|Ga0181537_10702922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	687	Open in IMG/M
3300014501\|Ga0182024_10004534	All Organisms → cellular organisms → Bacteria → Acidobacteria	31871	Open in IMG/M
3300014501\|Ga0182024_10005337	All Organisms → cellular organisms → Bacteria	28896	Open in IMG/M
3300014501\|Ga0182024_10209262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2656	Open in IMG/M
3300014501\|Ga0182024_10541300	All Organisms → cellular organisms → Bacteria → Acidobacteria	1471	Open in IMG/M
3300014657\|Ga0181522_10098977	All Organisms → cellular organisms → Bacteria → Acidobacteria	1682	Open in IMG/M
3300015195\|Ga0167658_1000779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	15421	Open in IMG/M
3300017821\|Ga0187812_1099416	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300017822\|Ga0187802_10394906	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300017928\|Ga0187806_1083081	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300017928\|Ga0187806_1265945	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300017933\|Ga0187801_10485611	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300017934\|Ga0187803_10310709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	630	Open in IMG/M
3300017948\|Ga0187847_10222110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300017955\|Ga0187817_10211911	Not Available	1235	Open in IMG/M
3300017961\|Ga0187778_10025481	All Organisms → cellular organisms → Bacteria	3613	Open in IMG/M
3300017961\|Ga0187778_10538652	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300017970\|Ga0187783_10067128	All Organisms → cellular organisms → Bacteria	2642	Open in IMG/M
3300017970\|Ga0187783_10646568	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300017975\|Ga0187782_10063834	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300017975\|Ga0187782_11283887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	574	Open in IMG/M
3300017988\|Ga0181520_10161779	All Organisms → cellular organisms → Bacteria → Acidobacteria	1806	Open in IMG/M
3300018007\|Ga0187805_10260887	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300018008\|Ga0187888_1000265	All Organisms → cellular organisms → Bacteria	56080	Open in IMG/M
3300018017\|Ga0187872_10333845	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300018044\|Ga0187890_10430585	Not Available	740	Open in IMG/M
3300018062\|Ga0187784_11044761	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300018086\|Ga0187769_10048349	All Organisms → cellular organisms → Bacteria	2947	Open in IMG/M
3300018088\|Ga0187771_10251478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1474	Open in IMG/M
3300019284\|Ga0187797_1311103	Not Available	570	Open in IMG/M
3300019284\|Ga0187797_1506372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	702	Open in IMG/M
3300020582\|Ga0210395_10335994	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1136	Open in IMG/M
3300021181\|Ga0210388_10236546	All Organisms → cellular organisms → Bacteria → Acidobacteria	1602	Open in IMG/M
3300021402\|Ga0210385_10050058	All Organisms → cellular organisms → Bacteria	2784	Open in IMG/M
3300021402\|Ga0210385_10671732	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	792	Open in IMG/M
3300021420\|Ga0210394_10074571	All Organisms → cellular organisms → Bacteria → Acidobacteria	2936	Open in IMG/M
3300021432\|Ga0210384_10226235	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300021433\|Ga0210391_11165547	Not Available	597	Open in IMG/M
3300021474\|Ga0210390_10057627	All Organisms → cellular organisms → Bacteria	3200	Open in IMG/M
3300021477\|Ga0210398_10226009	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300021477\|Ga0210398_10237875	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300021560\|Ga0126371_10081535	All Organisms → cellular organisms → Bacteria → Acidobacteria	3175	Open in IMG/M
3300022518\|Ga0224548_1024247	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300022555\|Ga0212088_10006883	All Organisms → cellular organisms → Bacteria	19872	Open in IMG/M
3300022721\|Ga0242666_1134219	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	596	Open in IMG/M
3300022881\|Ga0224545_1003359	All Organisms → cellular organisms → Bacteria → Acidobacteria	2781	Open in IMG/M
3300026320\|Ga0209131_1366142	Not Available	537	Open in IMG/M
3300026551\|Ga0209648_10000036	All Organisms → cellular organisms → Bacteria → Acidobacteria	76007	Open in IMG/M
3300027855\|Ga0209693_10023723	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
3300027869\|Ga0209579_10381399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	763	Open in IMG/M
3300027889\|Ga0209380_10643161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	612	Open in IMG/M
3300027908\|Ga0209006_10027701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5137	Open in IMG/M
3300027908\|Ga0209006_10675249	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	847	Open in IMG/M
3300028792\|Ga0307504_10103807	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300028906\|Ga0308309_10140672	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300029701\|Ga0222748_1068188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	642	Open in IMG/M
3300029943\|Ga0311340_10037210	All Organisms → cellular organisms → Bacteria	5899	Open in IMG/M
3300030007\|Ga0311338_10121274	All Organisms → cellular organisms → Bacteria → Acidobacteria	3188	Open in IMG/M
3300030007\|Ga0311338_10822526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	923	Open in IMG/M
3300031234\|Ga0302325_10129537	All Organisms → cellular organisms → Bacteria	4599	Open in IMG/M
3300031234\|Ga0302325_10735324	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300031234\|Ga0302325_11254055	Not Available	980	Open in IMG/M
3300031236\|Ga0302324_100008845	All Organisms → cellular organisms → Bacteria → Acidobacteria	21173	Open in IMG/M
3300031236\|Ga0302324_100026360	All Organisms → cellular organisms → Bacteria → Acidobacteria	11111	Open in IMG/M
3300031236\|Ga0302324_100308407	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2422	Open in IMG/M
3300031236\|Ga0302324_100834733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1277	Open in IMG/M
3300031708\|Ga0310686_110671070	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031720\|Ga0307469_11028420	Not Available	771	Open in IMG/M
3300031823\|Ga0307478_10525632	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300032160\|Ga0311301_10000988	All Organisms → cellular organisms → Bacteria	108958	Open in IMG/M
3300032160\|Ga0311301_10245377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2965	Open in IMG/M
3300032160\|Ga0311301_12058347	Not Available	663	Open in IMG/M
3300032515\|Ga0348332_13529823	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300032782\|Ga0335082_10026115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6232	Open in IMG/M
3300032805\|Ga0335078_10037025	All Organisms → cellular organisms → Bacteria	7244	Open in IMG/M
3300032805\|Ga0335078_10158002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3198	Open in IMG/M
3300032805\|Ga0335078_10304119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2143	Open in IMG/M
3300032805\|Ga0335078_10936758	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300032805\|Ga0335078_12095266	Not Available	601	Open in IMG/M
3300032805\|Ga0335078_12388260	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300032828\|Ga0335080_10379716	All Organisms → cellular organisms → Bacteria → Acidobacteria	1520	Open in IMG/M
3300032829\|Ga0335070_10190825	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300032892\|Ga0335081_10230572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2524	Open in IMG/M
3300032892\|Ga0335081_11375232	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300032895\|Ga0335074_10004476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	19224	Open in IMG/M
3300033134\|Ga0335073_11863614	Not Available	558	Open in IMG/M
3300033405\|Ga0326727_10549893	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.50%
Aquatic	Environmental → Aquatic	17.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.00%
Freshwater	Environmental → Aquatic → Freshwater	16.67%
Peat	Environmental → Terrestrial → Peat	11.67%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	24.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.67%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	8.33%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.00%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.67%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102967962	3300001593	Forest Soil	MLAVAIAGVLIVFALFLSMLSSSPKDDAEWNPDTEA*
Ga0062386_1016392142	3300004152	Bog Forest Soil	VGLSMLAAAIAGVLIVFALFLSMLSSSPKDDAEWKIDTEA*
Ga0070741_100371532	3300005529	Surface Soil	MWAAAITAVLIVFALFLSMLSSAPKDDPEWNPDTEP*
Ga0070741_103777182	3300005529	Surface Soil	MLIGAILAVLLIFGLFLSMLSSSPKSDAEWHPDTEA*
Ga0070738_1000192427	3300005531	Surface Soil	MLVGAIISGLLILGLFLSMLSSSPKPEQEKHFDTQL*
Ga0070734_101866961	3300005533	Surface Soil	MLAGAIVVVLLILGMFLSMLSSSPKADSKWHPDTDA*
Ga0070731_102647572	3300005538	Surface Soil	MLAVAIGAVLIVFALFLSMLSSSPKDDAEWKIDTEV*
Ga0070731_104684472	3300005538	Surface Soil	MWAAAIAALFLVFALFLSMLSSAPKDDPEWNPDTDV*
Ga0070733_102743031	3300005541	Surface Soil	MLAGAIAAILIVFALFLSMLSSSPKDDAEWNIDTET*
Ga0070733_103295322	3300005541	Surface Soil	MLVGAIVSGLLIFGLFLSMLGSSPKAESEKHFDSQV*
Ga0070732_101650882	3300005542	Surface Soil	MVASAIIGGLLVFGLFLSMLSSAPKGDAERHSDTEA*
Ga0070761_105556082	3300005591	Soil	MLAVAIAGVFIVFALFLSMLSSSPKDDVEWNPDTEA*
Ga0070764_101863702	3300005712	Soil	MLAGAIAAILLVFALFLSMLSSSPKDDAEWNPDTEA*
Ga0070717_100304054	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MVASAIIGGLLVFGLFLSMLSSAPKGDGKWHSDTDA*
Ga0070717_100607362	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLAAAIAGALIVFALFLSMLSSSPKDDAEWNIDTEA*
Ga0070765_1004980232	3300006176	Soil	MLAGAIAAVLLVFALFLSMLSSSPKDDAEFNIDTEA*
Ga0066660_114708832	3300006800	Soil	MLVGAIVSGLLIFGLFLSMLSSSPKSDSEKHLDTSGVKD*
Ga0073928_102152612	3300006893	Iron-Sulfur Acid Spring	MLFVTIIAVLFIFGLFLSMLSSSPKPDAEWHIDTEA*
Ga0099793_103653392	3300007258	Vadose Zone Soil	MMAGAIIAILLIFGLFLSMLSSSPKGEVEWHPDTDV*
Ga0066793_102211582	3300009029	Prmafrost Soil	MLIAAAIAILIILGLFLSMLSSSPKTEREFHPDTEV*
Ga0116217_106601052	3300009700	Peatlands Soil	MLAGAIAAVLLVFALFLSMLSSSPKDDAEWHPDTEA*
Ga0116223_104711352	3300009839	Peatlands Soil	MLMGAILAVLLIFGLFLSMLSSSPKGDSEWHPDTEA*
Ga0136449_1001892793	3300010379	Peatlands Soil	MLAGAIIGVLLIFGLFLSMLSSSPPSDAELHSDTDL*
Ga0136449_1003684591	3300010379	Peatlands Soil	MLMGAIIAVFLIFGLFLSMLGSSPKKEGEWNIDTEA*
Ga0136449_1013387601	3300010379	Peatlands Soil	MLVGAIVSGLFIFGLFLSMLSSSPKPDAEEKLDTQV*
Ga0136449_1013869212	3300010379	Peatlands Soil	MLAGAIVAVLLIFGLFLSMLSSSPKDDAEWKPDTEA*
Ga0137393_106937412	3300011271	Vadose Zone Soil	MLTGAIIAVLLIFGLFLSMLSSSPKSDAEWHIDTEV*
Ga0137363_101164622	3300012202	Vadose Zone Soil	MMAGAIIAILLIFGLFLSMLSSSPKREVEWHPDTDV*
Ga0137407_109155561	3300012930	Vadose Zone Soil	MLAGAIVALLLIFGLFLSMLSSSPKADPECQTDTEA*
Ga0181528_107294512	3300014167	Bog	MLATTIAAILLVFALFLSMLSSSPKDDAEWNADTEA*
Ga0181534_106433972	3300014168	Bog	MLFAAIIGVLLIFGLFLSMLSSSPKSDAEWHPDTEV*
Ga0181531_102298243	3300014169	Bog	MLAGAIIAVLLIFGLFLSMLSSSPKADPEYHPDTEA*
Ga0181537_107029222	3300014201	Bog	MLAGAIAAGLLVFALFLSMLSSAPKDDAEWHSDTDV*
Ga0182024_1000453424	3300014501	Permafrost	MLAGAIVAVLLIFGLFLSMLSSSPRGDSEYHPDTEA*
Ga0182024_100053373	3300014501	Permafrost	MLAAAIAGVLLVFALFLSMLSSSPKDDTEWNPDTEA*
Ga0182024_102092624	3300014501	Permafrost	MLAGAIAAILIVFALFLSMLSSSPKDDAEWKIDTET*
Ga0182024_105413003	3300014501	Permafrost	MFAGAIAAVLLVFALFLSMLSSSPKDDAEWNADTEA*
Ga0181522_100989772	3300014657	Bog	MLAAAIAGVLIVFALFLSMLSSSPKDEVEWNPDTEA*
Ga0167658_100077913	3300015195	Glacier Forefield Soil	MVAGAIIAILFIFGLFLSMLSSSPKQEAEWHPDTEV*
Ga0187812_10994162	3300017821	Freshwater Sediment	MLAGAIAAILLVFALFLSMLSSSPKDDAEWNPDTEA
Ga0187802_103949062	3300017822	Freshwater Sediment	MLAGAIVAVLLIFGLFLSMLSSSPKRDAKWHPDTEA
Ga0187806_10830812	3300017928	Freshwater Sediment	MLAGAIVAVLLIFGLFLSMLSSSPKRDSKWHPDTEA
Ga0187806_12659452	3300017928	Freshwater Sediment	MLVGAIVGGFLIFGLFLSMLSSSPKSKSEEHLDTQV
Ga0187801_104856112	3300017933	Freshwater Sediment	LAAAIAGVLIVFALFLSMLSSSPKDDAEWKPDTEA
Ga0187803_103107092	3300017934	Freshwater Sediment	MLAGAIVAGLLIFGLFLSMLSSSPKSDAKWHPDTEA
Ga0187847_102221102	3300017948	Peatland	MLLTAIIAVLLIFGLFLSMLSSSPKSDSEWHPDTDV
Ga0187817_102119111	3300017955	Freshwater Sediment	MLAGAIVAVLLIFGLFLSMLSSSPNRDAKWHPDTE
Ga0187778_100254812	3300017961	Tropical Peatland	MLVGAIVSGLLIFGLFLSMLSSSPKGESDNHLDSQV
Ga0187778_105386522	3300017961	Tropical Peatland	MLFGAIVAVLLVFGLFLSMLSSSPKRDSEYHPDTEA
Ga0187783_100671285	3300017970	Tropical Peatland	MLTAAIAGFLIVFALFLSMLSSSPKDDAEWNPDTDV
Ga0187783_106465681	3300017970	Tropical Peatland	MLAAAVAVLLIVFALFLSMLSSAPKDDQEWKPDTEA
Ga0187782_100638344	3300017975	Tropical Peatland	MLAAAITGVLIVFALFLSMLSSSPKDDAEWNIDTES
Ga0187782_112838871	3300017975	Tropical Peatland	EGGLLQMLVGAILGGLLIFGLFLSMLSSSPKSEPEKHFDTQV
Ga0181520_101617793	3300017988	Bog	MLAAAIAGVLIVFALFLSMLSSSPKDEVEWNPDTEA
Ga0187805_102608872	3300018007	Freshwater Sediment	MLAAAIAGVLIVFALFLSMLSSSPKDDGEWNVDTEA
Ga0187888_100026522	3300018008	Peatland	MLAGAIAAVLIVFALFLSMLSSSPKDDAEWKPDTEA
Ga0187872_103338452	3300018017	Peatland	MLVGAIVSGLLIFGLFLSMLSSSPKSKSEEHFDTQV
Ga0187890_104305851	3300018044	Peatland	MLTAAIAGILIVFALFLSMLSSAPKDDVEWNPDTEA
Ga0187784_110447611	3300018062	Tropical Peatland	MLIGAIVAVLLIFGLFLSMLSSSPKSDSEWHPDTDA
Ga0187769_100483494	3300018086	Tropical Peatland	MLAGAIIVVLLILGMFLSMLSSSPKSDSEWHPDTDA
Ga0187771_102514783	3300018088	Tropical Peatland	MLVGAIVAVLLIFGLFLSMLSSSPKGDSKWHPDTDA
Ga0187797_13111032	3300019284	Peatland	LAMLISAIVAVLLIFGLFLSMLSSSPKSDSEWHPDTDA
Ga0187797_15063722	3300019284	Peatland	VMLAGAIIVVLLILGMFLSMLSSSPKSDSEWHPDTDA
Ga0210395_103359942	3300020582	Soil	MLMGAIVAVLLIFGLFLSMLSSSPRADAEYNPDTEA
Ga0210388_102365462	3300021181	Soil	MLAGAILAVLIVFALFLSMLSSSPKDDAEWNIDTEA
Ga0210385_100500582	3300021402	Soil	MLAGAIAAILLVFALFLSMLSSSPKDDAEWNPDTDV
Ga0210385_106717322	3300021402	Soil	MLAGAIAAILIVFALFLSMLSSSPKDDAEWNIDTET
Ga0210394_100745714	3300021420	Soil	MLAGAIAAVLLVFALFLSMLSSSPKDDAEFNIDTEA
Ga0210384_102262352	3300021432	Soil	MLASAIIGVLLIFGLFLSMLSSSPKGDAEWPSDTEV
Ga0210391_111655472	3300021433	Soil	MFAGAIAAVLLVFALFLSMLSSSPKDDAEWNADTEA
Ga0210390_100576273	3300021474	Soil	MLAGAIAAILLVFALFLSMLSSSPKDDPEWNPDTDV
Ga0210398_102260093	3300021477	Soil	MLAVAIAGVFIVFALFLSMLSSSPKDDVEWNPDTEA
Ga0210398_102378752	3300021477	Soil	WESRMLMGAIVAVLLIFGLFLSMLSSSPRADAEYNPDTEA
Ga0126371_100815352	3300021560	Tropical Forest Soil	MILGAILSGLLIFGLFLSMLSSSPKSDPKKHFDTQV
Ga0224548_10242472	3300022518	Soil	SVMLAGTIVAVLLIFGLFLSMLSSSPRGDSEYHPDTEV
Ga0212088_1000688310	3300022555	Freshwater Lake Hypolimnion	MIVTAIAGLLLILGLFLSMLTSSPKGDGASHTDTL
Ga0242666_11342192	3300022721	Soil	FAVAIAGVLIVFALFLSMLSSSPKDDAEWNIDTEA
Ga0224545_10033593	3300022881	Soil	MLAGAIVAVLLIFGLFLSMLSSSPRGDSEYHPDTEA
Ga0209131_13661422	3300026320	Grasslands Soil	MMAGAIIAILLIFGLFLSMLSSSPKREVEWHPDTDV
Ga0209648_1000003664	3300026551	Grasslands Soil	MIAGAIIAVLLIFGLFLSMLSSSPKSDSEWHHDTKG
Ga0209693_100237232	3300027855	Soil	MLAGAIVAVLLIFGLFLSMLSSSPRADSECHPDTDV
Ga0209579_103813992	3300027869	Surface Soil	MWAAAIAALFLVFALFLSMLSSAPKDDPEWNPDTDV
Ga0209380_106431611	3300027889	Soil	MFAVAIAGVLIVFALFLSMLSSSPKDDVEWNPDTEA
Ga0209006_100277018	3300027908	Forest Soil	MFAVAIAGVLIVFALFLSMLSSSPKDDAEWNIDTEA
Ga0209006_106752492	3300027908	Forest Soil	MLAGAILAVLIVFALFLSMLSSSPKDDAEWNTDTEA
Ga0307504_101038071	3300028792	Soil	MLAGAVIAVLLIFGLFLSMLSSSPKGDSEWHPDSDV
Ga0308309_101406721	3300028906	Soil	GLTMLAGAIAAVLLVFALFLSMLSSSPKDDAEFNIDTEA
Ga0222748_10681882	3300029701	Soil	SMLAGAIAAILIVFALFLSMLSSSPKDDAEWNIDTET
Ga0311340_100372108	3300029943	Palsa	MFAFITAILIVFALFLSMLSSSPKDDADWNIDTEA
Ga0311338_101212744	3300030007	Palsa	MLAGAIVAVLLIFGLFLSMLSSSPRAESECNPDTDA
Ga0311338_108225262	3300030007	Palsa	MLAGAIAAGLLVFALFLSMLSSSPKDDAELNVDTEA
Ga0302325_101295374	3300031234	Palsa	MLAGAIAAFLIVFALFLSMLSSSPKDDVEWNPDTEA
Ga0302325_107353242	3300031234	Palsa	MLAGAIAAILLVFALFLSMLSSSPKDDVEWNPDTDA
Ga0302325_109381382	3300031234	Palsa	MLISAAVAFLFIIGLFLSMLSSSPKRDTEWNPDTEA
Ga0302325_112540551	3300031234	Palsa	MLAGAIVAVLLIFGLFLSMLSSSPRADSEYHPDTEA
Ga0302324_1000088459	3300031236	Palsa	MLVGTIAAVLIVFALFLSMLSSAPKDDSEWKPDTDA
Ga0302324_1000263603	3300031236	Palsa	MLAGAIAAVLLVFALFLSMLSSSPKDDAEWNPDTES
Ga0302324_1003084072	3300031236	Palsa	MLAGAIAAVLLVFALFLSMLSSSPKDDAELNPDTEA
Ga0302324_1008347333	3300031236	Palsa	LASAIAAILIVFALFLSMLSSSPKDDAEWNIDTEA
Ga0310686_1106710701	3300031708	Soil	MLMGAIVAVLLIFGLFLSMLSSSPRADAEYHPDTEA
Ga0307469_110284202	3300031720	Hardwood Forest Soil	MLVFAILALLLILGLFLSMLSSSPKGDSEWHSDTKA
Ga0307478_105256322	3300031823	Hardwood Forest Soil	MLVGAIVSGLFIFGLFLSMLSESPKAEQEKHFDTQA
Ga0311301_1000098827	3300032160	Peatlands Soil	MLAGAIAAVLLVFALFLSMLSSSPKDDAEWHPDTEA
Ga0311301_102453772	3300032160	Peatlands Soil	MLMGAILAVLLIFGLFLSMLSSSPKGDSEWHPDTEA
Ga0311301_120583472	3300032160	Peatlands Soil	MLMGAIIAVFLIFGLFLSMLGSSPKKEGEWNIDTEA
Ga0348332_135298232	3300032515	Plant Litter	AMLAGAIAAVLLVFALFLSMLSSSPKDDAEWNTDTEA
Ga0335082_100261154	3300032782	Soil	MLAGAIIAVLFIFGLFLSMLSSSPKADGEWHPDTDV
Ga0335078_100370256	3300032805	Soil	MLAGAIIVVLLILGMFLSMLSSSPKSDSEWHPDTEA
Ga0335078_101580022	3300032805	Soil	MLVGAIVSGLLIFGLFLSMLSSSPKAEPEKHFDTQV
Ga0335078_103041192	3300032805	Soil	MWAAAITAVLIVFALFLSMLSSSPKDDPEWNPDTEM
Ga0335078_109367582	3300032805	Soil	MLFGAIVAVLLIFGLFLSMLSSSPKDDAEWKPDTEA
Ga0335078_120952661	3300032805	Soil	MLVGAIVAVLLIFGLFLSMLGSSPKKDSEWNQDTEA
Ga0335078_123882601	3300032805	Soil	MLLGAIVSGLLIFGLFLSMLSSSPKSKSEEHFDSQV
Ga0335080_103797162	3300032828	Soil	MLLCAILAVLLIFGLFLSMLSSSPKGDSEWHPDTEA
Ga0335070_101908252	3300032829	Soil	MLFGAIISGLFILGLFLSMLSSSPKAEHEKHFDTQV
Ga0335081_102305724	3300032892	Soil	MVVGAIVSGLLIFGLFLSMVSSSPKRDSEDNLDTQL
Ga0335081_113752322	3300032892	Soil	MLIGAIVAVLLIFGLFLSMLSSSPKGDSEWHPDTEQ
Ga0335074_1000447618	3300032895	Soil	MLAAAIAGVLIVFALFLSMLSSAPKDDAEWNPDTEA
Ga0335073_118636142	3300033134	Soil	MLAAAIAGVLIVFALFLSMLSSSPKDDAEWNSDTEA
Ga0326727_105498932	3300033405	Peat Soil	MLISAAIALLFIVGLFLSMLSSSPKPDAEWNPDTEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073809

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences