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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F073808 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 120 |
| Average Sequence Length | 54 residues |
| Representative Sequence | MRILLLNLGPESTQEVNQALSGQGYELTTGRRLTVDKILALSPEVLITEATPSDLS |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 120 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 40.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.17 % |
| % of genes from short scaffolds (< 2000 bps) | 2.50 % |
| Associated GOLD sequencing projects | 87 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.45 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.667 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.333 % of family members) |
| Environment Ontology (ENVO) | Unclassified (30.833 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.167 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.38% β-sheet: 0.00% Coil/Unstructured: 72.62% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 120 Family Scaffolds |
|---|---|---|
| PF00582 | Usp | 5.00 |
| PF11453 | DUF2950 | 4.17 |
| PF00106 | adh_short | 2.50 |
| PF02852 | Pyr_redox_dim | 2.50 |
| PF11154 | DUF2934 | 2.50 |
| PF00296 | Bac_luciferase | 1.67 |
| PF14378 | PAP2_3 | 0.83 |
| PF03466 | LysR_substrate | 0.83 |
| PF04545 | Sigma70_r4 | 0.83 |
| PF10431 | ClpB_D2-small | 0.83 |
| PF00291 | PALP | 0.83 |
| PF08240 | ADH_N | 0.83 |
| PF00069 | Pkinase | 0.83 |
| PF13424 | TPR_12 | 0.83 |
| PF14342 | DUF4396 | 0.83 |
| PF02321 | OEP | 0.83 |
| PF14720 | NiFe_hyd_SSU_C | 0.83 |
| PF07494 | Reg_prop | 0.83 |
| PF00675 | Peptidase_M16 | 0.83 |
| PF13581 | HATPase_c_2 | 0.83 |
| PF02954 | HTH_8 | 0.83 |
| PF11737 | DUF3300 | 0.83 |
| PF13602 | ADH_zinc_N_2 | 0.83 |
| PF07228 | SpoIIE | 0.83 |
| PF03264 | Cytochrom_NNT | 0.83 |
| PF04055 | Radical_SAM | 0.83 |
| PF00201 | UDPGT | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 120 Family Scaffolds |
|---|---|---|---|
| COG0515 | Serine/threonine protein kinase | Signal transduction mechanisms [T] | 3.33 |
| COG1538 | Outer membrane protein TolC | Cell wall/membrane/envelope biogenesis [M] | 1.67 |
| COG1819 | UDP:flavonoid glycosyltransferase YjiC, YdhE family | Carbohydrate transport and metabolism [G] | 1.67 |
| COG2141 | Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) | Coenzyme transport and metabolism [H] | 1.67 |
| COG3005 | Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase | Energy production and conversion [C] | 0.83 |
| COG3292 | Periplasmic ligand-binding sensor domain | Signal transduction mechanisms [T] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.67 % |
| All Organisms | root | All Organisms | 3.33 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005536|Ga0070697_100609446 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 960 | Open in IMG/M |
| 3300011270|Ga0137391_10705152 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 838 | Open in IMG/M |
| 3300015053|Ga0137405_1399469 | All Organisms → cellular organisms → Bacteria | 2016 | Open in IMG/M |
| 3300027738|Ga0208989_10022916 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2151 | Open in IMG/M |
| 3300030991|Ga0073994_12059523 | Not Available | 814 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 28.33% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 19.17% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 13.33% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 9.17% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 8.33% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.17% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 3.33% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.33% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.83% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.83% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.83% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.83% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.83% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002681 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only) | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
| 3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015053 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017927 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022508 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022510 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022712 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026334 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes) | Environmental | Open in IMG/M |
| 3300026507 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B | Environmental | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300027105 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes) | Environmental | Open in IMG/M |
| 3300027504 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027587 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027616 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027674 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027678 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027738 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027767 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028798 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2 | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300029944 | II_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030991 | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031128 | Oak Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12635J15846_106873701 | 3300001593 | Forest Soil | MRILLLNLGVESAQEVNQALSGQGYEIAADRRLTVDKILALSPEVLITEATPSDLSCCGVISQIKASPD |
| JGIcombinedJ26739_1004303271 | 3300002245 | Forest Soil | MESVQEVGRALSGQGYEISADRSLTVEEVLTLSPGVLVTEVTPSDLGSCDL |
| JGIcombinedJ26739_1014440912 | 3300002245 | Forest Soil | MRILLLNLGLESTPEVTQALSGQGYELATGRRLTVDKILALSPEVLIT |
| Ga0005471J37259_1247042 | 3300002681 | Forest Soil | VMRILLLNLGMQSTREVKQALSGQGYEITADRSLTVDEVLALSPEVLIT |
| Ga0062389_1008105002 | 3300004092 | Bog Forest Soil | MRILLLNLDQGSTQEVTQALSGQGYEITTGRGLSVDEILGLSPGVLITEATPSDLSCCGLISQ |
| Ga0062388_1026734302 | 3300004635 | Bog Forest Soil | MKILLLDLGPESGPAVHQALDGQGYEILSEHGLTVEAVLALAPEVLITEATPS |
| Ga0062388_1027266642 | 3300004635 | Bog Forest Soil | MRILLLDLGVESAQAVEQALAGQGYDITTEPGLTVEAILALSPEILITEATP |
| Ga0066672_107419712 | 3300005167 | Soil | MRILLVSLGMESTQNVKQALLGQGYEVTSEPSLTVDEILALSPELLI |
| Ga0066688_100859886 | 3300005178 | Soil | LTAMRILLLNLGPESTQEVNQALSGQGYELTTGRRLTVDKILALSPEVLITEATPSDLSCCGV |
| Ga0070706_1008846832 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MRILLLDLGLESTQEVKQALSGQGYEIITGRGLTVDEILALSPELLITEATPSDLSC |
| Ga0070707_1015043181 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MRILLLDLGMESTQEVPQALSSQGYEITTHSGLTVDEILARSPEVLITEATPSDLSCCGVISQIK |
| Ga0070699_1004226152 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MLGDKLTSMRILLLNLGMESIQEVKQALSGQGYEITTERDLTVDEIL |
| Ga0070697_1006094462 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MRILLLDLGMESTQEVTQALSSQGYEITTHSGLTVDEILARSPEVLITEATPSDLSCCGVISQIK |
| Ga0070731_102729961 | 3300005538 | Surface Soil | VRILLLNLGGESSEAVKQALSGQGYEVATTQTQAVDEVLALSPEILITEATPSDL |
| Ga0066703_102694501 | 3300005568 | Soil | MRILLLNLGPESTQEVNQALSGQGYELTTGRRLTVDKILALSPEVLITEATPSDLS |
| Ga0070761_109326341 | 3300005591 | Soil | MRILFLDLGAESAQQAELALSGQGYEITTGRGLTVDEILARSPEVLITEATPSDLSCCGLIS |
| Ga0070762_105049551 | 3300005602 | Soil | MRILLLNLGTESSQDVTQALSGQGYEITTERNLTVDEILALSPELLIMEATPSNLSCCGLISQIKAS |
| Ga0070764_107498772 | 3300005712 | Soil | MRILLLNLDQGSTEKVAEALTGQGYEITTRLGLSVDEILGLSPGVLITEATPSDLSCCGLISQIK |
| Ga0070765_1005173381 | 3300006176 | Soil | MRILLLNMGMESNQEVKQALSGQGYEIIADRNLTVDEILALQPELLITEATPSNLSCCGLISQIKAS |
| Ga0073928_105365192 | 3300006893 | Iron-Sulfur Acid Spring | MRILLLNLGPESTQEVMQALSAQGYELTTGRRLTVDKILALSPEVLITEATPSDLSCCGVISQI |
| Ga0099794_106333312 | 3300007265 | Vadose Zone Soil | MRILLLNLGMGSTQEVEQALSGQGYEITADRGLTIDEILALSPEVLVTEATPSDLSCCGVIS |
| Ga0099830_102499491 | 3300009088 | Vadose Zone Soil | MRILLLNLGVESAEQVNQALSGQGYEITTDRRLTVEKILA |
| Ga0099828_105876492 | 3300009089 | Vadose Zone Soil | MRILLLDLGMESTQEVKQALSGQGYEITTDTGLTVDEILARSPEVLITEATPSDLSCCGVISQIKASP |
| Ga0099828_114910762 | 3300009089 | Vadose Zone Soil | MRILLLNLGIESTQEVQQALSGQGYEITTDHSLTVDE |
| Ga0099827_110115131 | 3300009090 | Vadose Zone Soil | MRILLLNLGMESTQEVKQGLSGQGYEITTARSLKVDEILALSPEVLITE |
| Ga0099827_117186911 | 3300009090 | Vadose Zone Soil | MRILLLNLGVESAQEVNQALSGQGYEIITDRRLTVDKILVLSPEVLITEATPSDLSCCGV |
| Ga0099792_100601691 | 3300009143 | Vadose Zone Soil | MMTAMRILLLNLGTESTQEVMQGLSGQGYEITTGRRLTVDEILVLSPEVLITEATPSDLSCCG |
| Ga0099792_104690512 | 3300009143 | Vadose Zone Soil | MRILLLNLGMGSTQEVEQALSGQGYEITADRGLTIDEILALSPEVLVTEATPSDLSCCGVISQIKT |
| Ga0074045_102515622 | 3300010341 | Bog Forest Soil | MHILLLNLGAESAQEVEQALSGQGYEITTGRGLTVDEILARSPEVLITEATPSDLS |
| Ga0137392_101068511 | 3300011269 | Vadose Zone Soil | MRILLLNLGVESAEQVNQALSGQGYEITTDRRLTVEKILALSPEVLITEATPSDL |
| Ga0137391_107051522 | 3300011270 | Vadose Zone Soil | MRILLLDLGMESTQEVTQALSSQGYEITTHSGLTVDEILARSPE |
| Ga0137391_107410461 | 3300011270 | Vadose Zone Soil | MRILLLNLGVESAEQVNQALSGQGYEITTDRRLTVEKILALSPEVLITEATPSDLS |
| Ga0137393_104696442 | 3300011271 | Vadose Zone Soil | MRILLLNLGKQSAQDVTQALAGQGYEITAERFLNVDEILALSPEVLI |
| Ga0137388_113811271 | 3300012189 | Vadose Zone Soil | MRILLLNLGPESTQEVNQALSGQGYEITTDRRLTVDKILALSPEVLITEATPSDLSCCGV |
| Ga0137363_109975371 | 3300012202 | Vadose Zone Soil | MHIVLFNLGIESTQKVDQALSGQGYEITAHRSPKVDEILALSPEVLITEATPSDL |
| Ga0137363_117486852 | 3300012202 | Vadose Zone Soil | MRILLLNLGMGSTQAVEQALSGQGYEITADRGLTIDEILAL |
| Ga0137399_108716422 | 3300012203 | Vadose Zone Soil | MRILLLNLGPESTQEVTQALSGQGYELTTGRRLTVDKILALSPEVLITEATPSDLSCCGVISQIKASP |
| Ga0137399_110642492 | 3300012203 | Vadose Zone Soil | MRILLLDLGVESTQEVKQALSGQGYEITTGWSLSVDEVLALFPEVLITEATPSDLSCCGLISQIK |
| Ga0137399_114050111 | 3300012203 | Vadose Zone Soil | MRILLLNLGPESTQEVTQALSGQGYELTTGRRLTVDKILALSPEVLITEATPSDLSCCGVISQIKASPD |
| Ga0137399_116813671 | 3300012203 | Vadose Zone Soil | MRILLLNVGIDSTQEVKQALSGKGYEITTERDLTVDEILALSP |
| Ga0137362_110917921 | 3300012205 | Vadose Zone Soil | MRILLLDLGMESTREVTQALSGQGYEITTGSGLMVDKILALSPEVLITEATPSDLS |
| Ga0137378_106328771 | 3300012210 | Vadose Zone Soil | MRILLLNLGPESTQEVNQALSGQGYEIITDRRLTVEKILALSPE |
| Ga0137359_114256271 | 3300012923 | Vadose Zone Soil | MRILLLNLGMGSTQAVEQALSGQGYEITADRDLAIDEILALSPEVLVTEATPSDLSCCGVISQIKAS |
| Ga0137404_108658961 | 3300012929 | Vadose Zone Soil | MRVLLFNLGMESTQEVRQALSGQGYEITAEHDLTVDEILALSPEVLVTEATPSDLSCCGVISQIK |
| Ga0137405_13258024 | 3300015053 | Vadose Zone Soil | MRILLLNLGMGSTQAVEQALSGQGYEITADRDLAIDEILALSPEVWSQKQHHPT* |
| Ga0137405_13994694 | 3300015053 | Vadose Zone Soil | MRVLLFNLGMESTQEVKQALSGQGYEITAERDLTVDEI |
| Ga0137409_102983571 | 3300015245 | Vadose Zone Soil | MRILLLNLGTESAQAVEHALSVQGYDIAAEHGLTIDQILARSPELLITEATPSNLSCGGLISQIK |
| Ga0187824_101319662 | 3300017927 | Freshwater Sediment | MRVLLVNLGVESTEAVRQALSDEGYEIATIETQAVDKVLALSPEVLITEATPSDL |
| Ga0179592_102604421 | 3300020199 | Vadose Zone Soil | MRIFLLNLGPESTQEVTQALSGQGYELTTGRRLTVEKIL |
| Ga0179592_104209541 | 3300020199 | Vadose Zone Soil | MMTAMRILLLNLGMESTQVVMQALSGQGYEITTGR |
| Ga0210407_104127442 | 3300020579 | Soil | MRILLLNLSAESSREVNQALSGQGYEFFTESNLTVDEILLLSPDVLITEATPSDLSCCGLISQIASS |
| Ga0210403_100360839 | 3300020580 | Soil | MRILLLNLGTESTQDVTQALSGQGYEITAERNLTVDEVLALSPELLIME |
| Ga0210403_106170251 | 3300020580 | Soil | MRILLVNLGTDSNHAVEQALSGQGYDIAADQDLSIDEILARSPGLLITEATPSDLSCCGL |
| Ga0210401_100200481 | 3300020583 | Soil | LLGGKLTAMRILLLNLGIESNHEVKQALSGQGYEITAERNLTVDKILSLSPEILITEA |
| Ga0210401_107137632 | 3300020583 | Soil | MRILLLNLAEESTQEVTQALSGQGYEITTGRDLSVDEILSLSPGVLITQATPSDL |
| Ga0210400_101384243 | 3300021170 | Soil | MRILVLNLGTDSTREVKQALSGQGYEITTEPNLTVDEILALLPEIL |
| Ga0210405_104999473 | 3300021171 | Soil | MRILILNLGMDSTQEVEQALSGRGYEIIADRGLTIDEILVLSPEVLVTEAT |
| Ga0210408_105424551 | 3300021178 | Soil | MYVLLLNLVAESTQEAQQALSGQGYEITTERNLTVDEILALSPGVLITEATPSDLSCCGLISQIKAG |
| Ga0210396_100488741 | 3300021180 | Soil | MRILLLNLGMESIQEVKQALSGQGYEITPERNLTVDKILAL |
| Ga0210396_108959083 | 3300021180 | Soil | MRILLLNLGTESTQDVTQALSGQGYEITTERNLTVDEVLALSPELLIMEATPSNLKVG |
| Ga0210385_115079512 | 3300021402 | Soil | MRILLLNLGTESTQAVEHALLGQGYDVAPVRSVTINQILARSPELLITEATPSDLSCCGLISQIKAS |
| Ga0210389_114195411 | 3300021404 | Soil | MRILLLNLGAESTQEVKQALSGQGYEVISERSLNVDEILALSPELLIT |
| Ga0210383_109098212 | 3300021407 | Soil | MHILLLNLGMESIREVKQALSGQGYEITTERTLTLDEIQTLSPEILVT |
| Ga0210391_115215511 | 3300021433 | Soil | MRILLLNLDQGSTQEVTHALSSQGYEITTDHGLSVDEILGLSPGVLITEATPSDLSCCG |
| Ga0210392_113484542 | 3300021475 | Soil | MRILLLNLGIESNHEVKQALSGQGYEITAERNLTVDKILALSPEILITEA |
| Ga0210409_106466772 | 3300021559 | Soil | MRILLLNLGMESIQEVKQALSGQGYEITAERNLTVDKILALSPEILITEATPSDL |
| Ga0222728_10460971 | 3300022508 | Soil | MRILILNLGMDSTQEVEQALSGRGYEIIAVRGLTIDEILVLSPEVLVTEATPSDL |
| Ga0242652_10234102 | 3300022510 | Soil | MRILILNLGMDSTQEVEQALSGRGYEIIADRGLTIDEILVLSPEV |
| Ga0242653_11029761 | 3300022712 | Soil | MRILLLNLGVGSTQEVEQALSGQGYEVTADRGLTIDEILALSPEVL |
| Ga0137417_12362531 | 3300024330 | Vadose Zone Soil | MMTAMGILLLNLGTESTQEVMQALSGQGYETTTGRRLTVDEVEVLAHSPE |
| Ga0207684_104589531 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MRILLLDLGLESTQEVKQALSGQGYEIITGRGLTVDEILALSPELLITEATPSDLSCCGLITQIKA |
| Ga0207663_100929261 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MRILLLNLGMESILEVKQALSGQGYEITAERDLTVDKILALSPEILITEATPSDLN |
| Ga0209377_10850451 | 3300026334 | Soil | MRILLLNLGPESTQEVTQALSGQGYELTTGRRLTVEKILALSPEVLITEATPSDLSCCGV |
| Ga0257165_10505231 | 3300026507 | Soil | MMTAMGILLLNLGTESTQVVMQALSGQGYEITTGRRLTVDEILAHSPEVLITEATPSDLSCCGL |
| Ga0179593_12346047 | 3300026555 | Vadose Zone Soil | MRILLFNLGMGSTQAVEQALSGQGYEITADRDLTIDEILALSPEVLVTEATPSDLS |
| Ga0179587_104842402 | 3300026557 | Vadose Zone Soil | MRILLLDLGVESTQEVTQALSGQGYEITTGRSLSVDEVLALFPEVLITEATP |
| Ga0207944_10128091 | 3300027105 | Forest Soil | MRILLLNLGMESILEVKQALSGQGYEITAERDLTVDTILALS |
| Ga0209114_10761851 | 3300027504 | Forest Soil | MRILLLNLDQGSTEKVTEALSGQGYEIKTGRGLPVDEILGLSPG |
| Ga0209220_10955482 | 3300027587 | Forest Soil | MRILLLNLGVESTPEVTQALSGQGYELTTGRRLTVDKILTLSPEVLITEATPSDLSCCGVISQIKASP |
| Ga0209106_11201361 | 3300027616 | Forest Soil | MRISLVNLAMESCQEVERALSGQGYEITADRSLTVDEILALSPEVLVTEVTPSDL |
| Ga0209118_10207791 | 3300027674 | Forest Soil | MRILLLNLGPESTQEVTQALSGQGYELTTGRRLTVEKILALSPEVLITE |
| Ga0209011_11116823 | 3300027678 | Forest Soil | MRILLLNLGPESIQEVTQALSGQGYELTTGRRLTVEKILALSPEVL |
| Ga0208989_100229161 | 3300027738 | Forest Soil | MKVETFGDKLKVMRILLLNLGLKSTREVKQALSGQGYEITADRSLTVDEVLALSPEVLITEATPSDLSCCG |
| Ga0209655_101100642 | 3300027767 | Bog Forest Soil | MRILLLSLDQGSTQEVTQALAGQGYETTTGRGLSVDEILGLSPGVLITEAKPSDLSCCG |
| Ga0209180_104278311 | 3300027846 | Vadose Zone Soil | MYILLLNLGMESTEEVKQALSGQGYEITTERNLTVDEVLALSPEVLITEATPSDLSCCGL |
| Ga0209701_106492641 | 3300027862 | Vadose Zone Soil | MRILLLDLGMESTQEVTQALSSQGYEITTHSGLTVDEILARSPEVLITEATPSDLSCCGV |
| Ga0209701_106761791 | 3300027862 | Vadose Zone Soil | MRVLLLNLGVESTQDVKQALSGQGYEITVDRGLTV |
| Ga0209275_100458931 | 3300027884 | Soil | MRILLLDLGVESTGQVEQALASQGYEITAGHDLTVDQVFALSPDVLITEATPSDL |
| Ga0209624_103116761 | 3300027895 | Forest Soil | MHIVLLNVGMKSAQEVQRVLSGQGYEITTRRTPTVDEIHALSAEVLITEATPSDLSCC |
| Ga0209624_110103342 | 3300027895 | Forest Soil | MRILLVNLDQGSTHEVTQALSGQGYEITTGRDLSVDEIVGLSPGVLITEATPSDLS |
| Ga0209526_101446051 | 3300028047 | Forest Soil | MRVLLLNLGVESAQEVNQALSGQGYEIITDRRLTVDKILALSPEVLI |
| Ga0209526_105412642 | 3300028047 | Forest Soil | MRILLLNLGPESTQEVTQALSGQGYELTTGRRLTVEKILALSPEVLITEATPSDLSCCG |
| Ga0209526_107846851 | 3300028047 | Forest Soil | MRVLLLNLGTESTQEVQQALSGQGYEIARDRNLTVDEVLALSPEVLITEAT |
| Ga0302222_102573972 | 3300028798 | Palsa | MRILLLNLDQGSTLEVTRALSGQGYEITTGSGLSVDETLGLSPEVLITEATPSDLSCC |
| Ga0222749_104152882 | 3300029636 | Soil | MRILLLNLGMDSAREVKQALSGQGYEITADRSLSVDEILTLSPEVLVTEA |
| Ga0222749_105846502 | 3300029636 | Soil | MRSLLVNLAMESVQEVARALSGQGYEITADRNLTVEEMLTLSPEVIVTEVTPSDLGNC |
| Ga0311340_107805301 | 3300029943 | Palsa | MRILLLNLDQGSTQEVTQALEGQGYEITTGRSLSVDDILGLSP |
| Ga0311352_103878962 | 3300029944 | Palsa | MRILLLNLDQGSTQEVTQALSGQGYETTTGRDLSVDEVLRLSPGVLI |
| Ga0311339_109907172 | 3300029999 | Palsa | MRILLLNLDQGSTLEVTRALSGQGYEITTGSGLSVDETLGLSPEVLITEATPSDLSCCGLISQIK |
| Ga0302177_107218481 | 3300030053 | Palsa | MRILLLNLDQGSTLEVTHALSGQGYEITTGSGLSVDETLGLSPEVLITEATPSDLSCCG |
| Ga0311353_102578572 | 3300030399 | Palsa | MRILLLNLDQESTQKVTQALSGQGYETTTGRGLSVDEIRALSPGVLITEATP |
| Ga0311353_112031881 | 3300030399 | Palsa | MRILLLNLDQGSTLEVTHALSGQGYEITTGSGLSVDETL |
| Ga0311370_107606962 | 3300030503 | Palsa | MRILLINLDQGSTHEVTQALSGQGYEITTGRDLSVDEIVGLAP |
| Ga0311354_102401943 | 3300030618 | Palsa | MRILLLNLDQGSTQEVTQALSGQGYEITTGRGLSVDEILGLSP |
| Ga0073994_120595231 | 3300030991 | Soil | MRVLLLNLGMGSTQEVKQALSGQGYEITAERNLTVNEILALSPEVL |
| Ga0170823_161049702 | 3300031128 | Forest Soil | MRILLLNLGPESTQEVNQALSGQGYEITTDRRLTVDKILALSPEVL |
| Ga0302325_112208272 | 3300031234 | Palsa | MRILLLNLDQGTTQEVTQAVSGQGYEITTGHGLSVDEILGLSPGVLITEATPSDL |
| Ga0302324_1005850301 | 3300031236 | Palsa | MRILLINLDQGSTHEVTQALSGQGYEITTGRDLSVDEIVGLAPGVLITEATPSDLSCCGLISQIKAGPD |
| Ga0310686_1070095392 | 3300031708 | Soil | MRILLLTLDQGSTQEVTQALSGQGYEITTGRGLAVDEILGLSPEVLITEATPSDLSCCGL |
| Ga0307474_103577831 | 3300031718 | Hardwood Forest Soil | MRILLLDLGVESTQEVTQALSGQGYEITTGRGLSVDEI |
| Ga0307475_104663991 | 3300031754 | Hardwood Forest Soil | MHVLLFNLGVESTQAVTQALSDQGYEITTGRSLTADEILALSPEVL |
| Ga0307478_100252971 | 3300031823 | Hardwood Forest Soil | MIAMRILLLNLGTESTQDVTQALSGQGYEITTERNLTVDEILALSPELLIIEATPSNLSCCGLI |
| Ga0307478_104222001 | 3300031823 | Hardwood Forest Soil | MRILLLDLGVESTQEVTQALSGQGYEITTGRGLSVDEILALFP |
| Ga0307478_106670103 | 3300031823 | Hardwood Forest Soil | MRILLLNLGTESTQDVTQALSGQGYEITTERNLTVDEILALSPELLIMEATPSNL |
| Ga0307478_111313131 | 3300031823 | Hardwood Forest Soil | MRILLLNLGTESTQAVEHALLGQGYDIAPVRSVTIDQIPALSPELLITEATPSDLSCC |
| Ga0307478_111619662 | 3300031823 | Hardwood Forest Soil | MRILLLNLGAESTQEVKQALSGQGYEVLSERSLNVDEILALSPELLITEATP |
| Ga0307478_113698952 | 3300031823 | Hardwood Forest Soil | MRILLLDLGPESTTAVQQALSGQGYDIISDRGLTVEAILALSPEVLITEATPAD |
| Ga0307479_108865891 | 3300031962 | Hardwood Forest Soil | MRILLLNLGMESIHEVTQALSGQGYENTAERNLTV |
| Ga0307471_1013469751 | 3300032180 | Hardwood Forest Soil | MRILLLNLGIESNHEVKQALSGQGYEITAERNLTVDKILALSPEILITE |
| Ga0370515_0463484_389_535 | 3300034163 | Untreated Peat Soil | MRILLLNLDQGSTQEVTQALSGQGYEITTGRGLSVDEILVLSPGVLITE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |