 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F073787 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 120 |
| Average Sequence Length | 56 residues |
| Representative Sequence | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQE |
| Number of Associated Samples | 91 |
| Number of Associated Scaffolds | 120 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.17 % |
| % of genes from short scaffolds (< 2000 bps) | 3.33 % |
| Associated GOLD sequencing projects | 87 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.44 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (95.833 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.167 % of family members) |
| Environment Ontology (ENVO) | Unclassified (32.500 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.833 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 48.81% β-sheet: 0.00% Coil/Unstructured: 51.19% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 120 Family Scaffolds |
|---|---|---|
| PF07885 | Ion_trans_2 | 9.17 |
| PF12833 | HTH_18 | 5.83 |
| PF03600 | CitMHS | 5.00 |
| PF01594 | AI-2E_transport | 2.50 |
| PF00691 | OmpA | 2.50 |
| PF09865 | DUF2092 | 1.67 |
| PF08483 | Obsolete Pfam Family | 0.83 |
| PF13533 | Biotin_lipoyl_2 | 0.83 |
| PF00999 | Na_H_Exchanger | 0.83 |
| PF02518 | HATPase_c | 0.83 |
| PF16576 | HlyD_D23 | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 120 Family Scaffolds |
|---|---|---|---|
| COG0628 | Predicted PurR-regulated permease PerM | General function prediction only [R] | 2.50 |
| COG0025 | NhaP-type Na+/H+ or K+/H+ antiporter | Inorganic ion transport and metabolism [P] | 0.83 |
| COG0475 | Kef-type K+ transport system, membrane component KefB | Inorganic ion transport and metabolism [P] | 0.83 |
| COG3004 | Na+/H+ antiporter NhaA | Energy production and conversion [C] | 0.83 |
| COG3263 | NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains | Energy production and conversion [C] | 0.83 |
| COG4651 | Predicted Kef-type K+ transport protein, K+/H+ antiporter domain | Inorganic ion transport and metabolism [P] | 0.83 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 95.83 % |
| All Organisms | root | All Organisms | 4.17 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300020579|Ga0210407_10031306 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3956 | Open in IMG/M |
| 3300021178|Ga0210408_10535925 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 929 | Open in IMG/M |
| 3300028047|Ga0209526_10431459 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 870 | Open in IMG/M |
| 3300031122|Ga0170822_10779611 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 867 | Open in IMG/M |
| 3300031820|Ga0307473_10310708 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 997 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 44.17% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 8.33% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 8.33% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 6.67% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 6.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 5.83% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.00% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.67% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.67% |
| Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment | 0.83% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.83% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.83% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.83% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.83% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.83% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.83% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2199352024 | Bare-fallow DEEP SOIL | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004119 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300006047 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300010937 | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017933 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 | Environmental | Open in IMG/M |
| 3300017934 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022527 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022532 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022533 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022712 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025315 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027047 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes) | Environmental | Open in IMG/M |
| 3300027326 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030916 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030917 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031122 | Oak Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031128 | Oak Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032041 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 | Environmental | Open in IMG/M |
| 3300032063 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| 3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| deeps_03285050 | 2199352024 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDE |
| JGIcombinedJ51221_101012321 | 3300003505 | Forest Soil | VTPEFASRSFMIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQTS |
| JGIcombinedJ51221_102985471 | 3300003505 | Forest Soil | VTPEFASRSFMIVRSSMIIFGMVVGMSISTNAETVKVMDEASTDGS |
| Ga0058887_14832791 | 3300004119 | Forest Soil | MIIRSFMIIFGMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQERRD |
| Ga0063455_1013981991 | 3300004153 | Soil | MTPGFATTRSFMIIRSSIIIFGMVVAMSVSTNAETIKVIDRAS |
| Ga0063356_1060189471 | 3300004463 | Arabidopsis Thaliana Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEAATDGSFTVAQTSGMERRGERRDTRQNCRQANGAV |
| Ga0065705_104061323 | 3300005294 | Switchgrass Rhizosphere | VTAAFIPRSSIVAFCLVVGVSISTSAETVRVLNQASTDGSFIIAQTNGQERRDTKQDCRQAEGAVGADK |
| Ga0070690_1003273161 | 3300005330 | Switchgrass Rhizosphere | MTPGFTTNRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEGSTDGSFTIAQTSGMERRGDRR |
| Ga0070705_1015173681 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTSGMERRGERRDTRQDCRQ |
| Ga0068867_1005628931 | 3300005459 | Miscanthus Rhizosphere | VTAGFISRSSIITFCLVAGVSIATSAETVKVIDQASTDGSFVVAQTSGMERRGERRDTRQDCRQKEG |
| Ga0070698_1001310071 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | VTLEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQT |
| Ga0075024_1005830291 | 3300006047 | Watersheds | VTPEFASRSLKIIRSSLKIIRSSMIIFGMVVGMSISTN |
| Ga0070765_1012832362 | 3300006176 | Soil | MTSKFVSRSFGIIRSSVLIFGMVVGMSITTNAEAVNAATEASTDGSFTLAQTNGQDRRDTRQDCR |
| Ga0070765_1013373581 | 3300006176 | Soil | VTPEFVSRSFMIIRSFMIIFGMVVGMSISTNAETVKVMDEASTDGSF |
| Ga0137776_12641371 | 3300010937 | Sediment | MKRARSFMIIRSFMIIFGVVVGMSISTNAETVKVTDGASTDGSFTIA* |
| Ga0150985_1076926881 | 3300012212 | Avena Fatua Rhizosphere | MTPGFATTRSFMIIRSSIIIFGMVVAMSVSTNAETIKVIDRASSDGSFTIAQTNGQD |
| Ga0150984_1034137793 | 3300012469 | Avena Fatua Rhizosphere | MTREFTTKSFMIIRTSIIILGMVVGMSISTNAETVKVMNEASTDGSFTIAQTNGQDRRDTRQDCRQD |
| Ga0157378_125385821 | 3300013297 | Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDG* |
| Ga0182041_111912862 | 3300016294 | Soil | VTPEFASRSFMIISSSMIIFGMVVGMSISTNAETVKVMDEASTDSPFTIAQTNGQDRRSNRQDCRQQNGAVGAD |
| Ga0182034_100470716 | 3300016371 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERRDTRQN |
| Ga0182040_100364252 | 3300016387 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGM |
| Ga0187814_100615102 | 3300017932 | Freshwater Sediment | VTPEFVSRSFMIIRSFMIIFGMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQERRETRQHCRGENGAVGANKRHCKQTGRQN |
| Ga0187801_101054201 | 3300017933 | Freshwater Sediment | VTLEFASRSFTIIRSFMIIFGMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQERRETRQHCRGENGAVGANKRHCKQTGRQN |
| Ga0187801_104715551 | 3300017933 | Freshwater Sediment | MTSKLIPRSFMIIRSSMLVFGMVVGVSIPTNAETSNATDQ |
| Ga0187803_104212881 | 3300017934 | Freshwater Sediment | SQKEDQDVTPEFVSRSFMIIRSFMIIFGMVVGMSISTNAETVKVMNEASTDGSFVIAQTTGQDRWGTRQDCRQQSGAVGADKRHCKQADRQN |
| Ga0187819_101847152 | 3300017943 | Freshwater Sediment | VTPEFVSRSFMIIRSFMIIFGMVVGMSISTNAETVKVM |
| Ga0187817_103237351 | 3300017955 | Freshwater Sediment | MTPEFASRSFMIIRSFMILFGMVVGMSISTNAETVKVMDEAATDGSFTIAQTNGQ |
| Ga0187816_100234843 | 3300017995 | Freshwater Sediment | SRSFMIIRSSMLVFGMVVCMSIPTNAETAKVMDEPSADGSFIIAQTGGACSGRS |
| Ga0187816_102716951 | 3300017995 | Freshwater Sediment | VTPEFVSRSFMIIRSFMIIFGMVVGMSISTSAKTVKVMDGASTDGSFTIAQTNGQERRETRQHCRGENGAVGAGKRHCKQTGRQN |
| Ga0210407_100313067 | 3300020579 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVM |
| Ga0210407_103825011 | 3300020579 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAESVKVMDEAST |
| Ga0210403_108108381 | 3300020580 | Soil | VTPEFFSRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQ |
| Ga0210403_110933711 | 3300020580 | Soil | VTPEFASRSFMIIRSSVIIFGLVVGMSISTNAETVRVMDEASTDGSFTVAQTSG |
| Ga0210399_100773465 | 3300020581 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQDCRQGNGAVGA |
| Ga0210399_109152781 | 3300020581 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQE |
| Ga0210399_113342541 | 3300020581 | Soil | VTPEFASRSFMIIRSSMIILGMVVGMSISTNAETVKVMYE |
| Ga0210401_102650312 | 3300020583 | Soil | VTPEFASRSFMIIRSSMIILGMVVGMSISTNAETVK |
| Ga0210401_107154101 | 3300020583 | Soil | VTLELASRSFMIIRSSIIIFGMVVGMSISTNAETVKVMDEASTDG |
| Ga0210401_113680602 | 3300020583 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKLMDEASTDGSFTIAQ |
| Ga0210406_112500472 | 3300021168 | Soil | MVIRSSMIIFGMVVGMSISTNAETVKVMDQASTDRPFTIAQTNGQNRRDTRRDCRQEEGAVG |
| Ga0210400_106634702 | 3300021170 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKLMDEASTDGSFTIAQTAG |
| Ga0210405_101042531 | 3300021171 | Soil | VTPEFASRSFVIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQTS |
| Ga0210405_101860541 | 3300021171 | Soil | VTPEFASRSFMIIRSSVIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQNCRHANGAVG |
| Ga0210405_102918612 | 3300021171 | Soil | VTPEFASRSFMIIRSSLIILGMVVGMSISTNAETVKVMDEASTD |
| Ga0210405_108849911 | 3300021171 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGVSISTNAETVKG |
| Ga0210408_101483651 | 3300021178 | Soil | VTPEFVSRSIMIIRSSMIIFGMVVGMSISTNAETVKVMDEAS |
| Ga0210408_102742574 | 3300021178 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQNCRQANGAVGA |
| Ga0210408_103024223 | 3300021178 | Soil | VTPEFASRSFMIIRSSMLIFGMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQERRDTRQNCRHANGAV |
| Ga0210408_105359253 | 3300021178 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSIATNAETVKVMDEASTDG |
| Ga0210408_108791582 | 3300021178 | Soil | VTPEFVSRSIMIVRSCVIIFGMVVGMSIATNAESVKVIDEASTDGSFTIAQTNGQERRDTRQNC |
| Ga0210396_103845672 | 3300021180 | Soil | VTPEFASRSFMIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQT |
| Ga0210396_104662652 | 3300021180 | Soil | VTPEFVSRSFMIIRSSMIIFGMVVGMSISTDAETVKVMDEASTDGSFTIAQTNGQDRRDTRQNCRQANGAVGADKR |
| Ga0210393_109585761 | 3300021401 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVM |
| Ga0210387_107094943 | 3300021405 | Soil | VTPEFVSRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFT |
| Ga0210387_116587671 | 3300021405 | Soil | VTPEFVSRSIMIIRSSMIIFGMVVGMSITTNAETVKVM |
| Ga0210386_116775391 | 3300021406 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQNCRQEKGAV |
| Ga0210383_104886481 | 3300021407 | Soil | VTPEFVSRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTLAQTSGM |
| Ga0210394_105488453 | 3300021420 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMNEVSTDGSFTVAQTSGM |
| Ga0210384_103847861 | 3300021432 | Soil | VTPEFASRSFVIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQTSGMERRGERRDTR |
| Ga0210392_107005041 | 3300021475 | Soil | VTPEFVSRSIMIIRSSMIIFGMVVGMSITTNAETVKV |
| Ga0210410_100988584 | 3300021479 | Soil | VTPEFASRSFMIVRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTS |
| Ga0210410_105469581 | 3300021479 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMNEASTDGSFTIAQTNGQ |
| Ga0210409_107610351 | 3300021559 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKLMDEASTD |
| Ga0242664_10285393 | 3300022527 | Soil | VTPEFASRSFMSIFGMLVGLSISTNAETVKVIDAASTDGSFTIAQTSGMERRGDRRDTRQDCRQ |
| Ga0242655_101378032 | 3300022532 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSIATNAETVKVMDEASTDGSFTVAQTSGMERRGERRDTRQNCR |
| Ga0242655_102230122 | 3300022532 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTVAQTNGQERRDTRQNCRQ |
| Ga0242662_102473631 | 3300022533 | Soil | VTPEFASRSFVIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQTSGMERRGE |
| Ga0242653_10840351 | 3300022712 | Soil | VTPEFVSRSIMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSF |
| Ga0207697_105019502 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | MTPGFTTNRSFMIIRSSMIIFGMVVAMSISTNAETVKAG |
| Ga0207692_104056673 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMD |
| Ga0207699_104386251 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQNCRHAN |
| Ga0207684_107021002 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAESAKVMDEASTDGSFTIAQTSGMERRGERRDTRQNCRQANGAVG |
| Ga0207693_100979094 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVK |
| Ga0207669_114491682 | 3300025937 | Miscanthus Rhizosphere | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDETSTGGSFTIAQT |
| Ga0207641_104999002 | 3300026088 | Switchgrass Rhizosphere | MTPKFDTGSLRMIRSSMLIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTSGMERRG |
| Ga0207676_113632761 | 3300026095 | Switchgrass Rhizosphere | MTPGFTTNRSFMIIRSSMIIFGMVVAMSISTNAETVKVTDGASADGSFIIAQTTGMDRRQDRR |
| Ga0208730_10332561 | 3300027047 | Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAESVKVKDEASTDGSFTIAQTSGMERRG |
| Ga0209731_10790251 | 3300027326 | Forest Soil | VTPEFASRSFIIRSFMIIFGMVVGMSISTNAETVKVMDEASTDGS |
| Ga0209526_101231171 | 3300028047 | Forest Soil | VTPEFASRSFVIIRSSMIILGMVVGMSISTNAETVKVMDEASTDGSFTVAQT |
| Ga0209526_104314593 | 3300028047 | Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTVAQT |
| Ga0209526_105213433 | 3300028047 | Forest Soil | VTPEFASRSFMIIRSSVIIFGLVVGMSISTNAETVRVMDEASTDGSFTVAQTSGMERRG |
| Ga0222749_101444453 | 3300029636 | Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAESV |
| Ga0222749_103187141 | 3300029636 | Soil | VTPKFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTD |
| Ga0075386_100277121 | 3300030916 | Soil | VTPEFASRSFMIIRSSMIIFAMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQ |
| Ga0075382_117700451 | 3300030917 | Soil | VTPEFASRSLMIIRSSVIIFGMVVGMSISTNAETVKVMDEASTDGSF |
| Ga0170834_1000424932 | 3300031057 | Forest Soil | VTPEFASRSFMIIRSSIIIFAMVVGMSISTNAETVKVMDQASTDGSFTIAQTNGQ |
| Ga0170834_1107481681 | 3300031057 | Forest Soil | MASRFTARSLMIIRSSMLIFGTVVAMSIPANAETAKVTGEAASTDRSFVIAQTNGQDRRDNRQDCRQ |
| Ga0170822_107796111 | 3300031122 | Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRDTRQDCRQ |
| Ga0170822_145590721 | 3300031122 | Forest Soil | VTPEFASRSFMVIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQE |
| Ga0170823_137304441 | 3300031128 | Forest Soil | VTPEFVSRSIMIVRSSVIIFGMVVGMSITTNAESVKVMDGASTDGSFTIAQTNGQEHRDTRQN |
| Ga0170824_1013722992 | 3300031231 | Forest Soil | MTPKPVSRSFMIIRSSVLVFGMVIGLSISTNAETVKVMDGAATDGSFILAQTSGMERRGERRDTRQHCRGQNGLGADKR |
| Ga0170824_1054933061 | 3300031231 | Forest Soil | VTPEFASRSFMVIRSSMIIFGMVVGMSISTNAETVKVMDEASTGGSFIIAQTNGQERRDTRQECRQGNG |
| Ga0170820_173845822 | 3300031446 | Forest Soil | MTPKPVSRSFMIIRSSVLVFGMVIGLSISTNAETVKVMDAASTDGSFIVAQ |
| Ga0170818_1061047821 | 3300031474 | Forest Soil | MAPKFVSESLMIIRSSMLIFGMVVAISIPTNAETLKVMDEAASTDRSFVIAQTNGQDRRDNRQDCRQENGAVGADK |
| Ga0170818_1109473651 | 3300031474 | Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTRGQDR |
| Ga0318541_104082361 | 3300031545 | Soil | VTTEFAARSLTIIRSSMIIFGIVVGMSISTNTETVKVMDEASTDGSFTIAQTTGMERRGERRDTRQNCRQANGL |
| Ga0318555_101092121 | 3300031640 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERRDTRQNCR |
| Ga0318572_105139841 | 3300031681 | Soil | VTPEFASRSFMIIRSSMIIFSMVVGMSISTNAETVKVMDRAATDGSFTVAQTNG |
| Ga0318560_103511571 | 3300031682 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERRDTRQNCRQAN |
| Ga0310686_1180830491 | 3300031708 | Soil | VTPEFVSRSLMIIRSSMIIFGMVIGMSISTNAETVKVMDQASTDGSFTIAQTNGQERR |
| Ga0307474_103714621 | 3300031718 | Hardwood Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVIMDEASTDGSFTIAQTSGM |
| Ga0306917_113833601 | 3300031719 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTD |
| Ga0307468_1013723732 | 3300031740 | Hardwood Forest Soil | VTPKFASRSFMIIRSSMIVFGMVVGMSISTNAESVKVMD |
| Ga0307477_100691641 | 3300031753 | Hardwood Forest Soil | VTPEFASRSFMIIRSFMIIFGMVVGMSISTNAETVKVMDEASTDGSFT |
| Ga0307475_109446221 | 3300031754 | Hardwood Forest Soil | VTPEFASRSFMIIRSSMIIFSMVVGMSISTNAETVKVMDEASTDGS |
| Ga0307473_103107081 | 3300031820 | Hardwood Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTSGMERR |
| Ga0307478_114645602 | 3300031823 | Hardwood Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEA |
| Ga0306919_110840021 | 3300031879 | Soil | VTPEFASRSFMIIRSFMIIFGMVVGMSISTNAETVKLMDETATDGSFTVAQ |
| Ga0306923_114393052 | 3300031910 | Soil | VTPEFASRLFMIIRSSMIILGMVVGLSISTNAETVRVMDEASTDGSFTIAQTSGMERRGERRDTRQ |
| Ga0306921_126546801 | 3300031912 | Soil | VTTEFAARSLTIIRSSMIIFGIVVGMSISTNTETVKVMDE |
| Ga0310909_115535972 | 3300031947 | Soil | VTSEFASRSFMIIRSFMIIFGMVVGMSISTNAETVKLMDETATDGSFTVAQTNGMDRREDRRDTRQNCRDQNGAVGADK |
| Ga0307479_106638911 | 3300031962 | Hardwood Forest Soil | VTPEFFSRSFMIIRSSMIIFGMVVGMSISTNAETVK |
| Ga0310911_107596852 | 3300032035 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERRDT |
| Ga0318549_100277244 | 3300032041 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETV |
| Ga0318504_106373352 | 3300032063 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERRDTRQNCRQANGAV |
| Ga0307471_1006384511 | 3300032180 | Hardwood Forest Soil | VTPEFVSRSFMIIRSFMIIFGMVVGMSISTNAETVKVMDEAS |
| Ga0307471_1023770292 | 3300032180 | Hardwood Forest Soil | VTPEFASRSFMIIRSSMIIFGMVVGMSISTNAETVKVMDEASTDGSFTIAQTNGQERRATRQDCR |
| Ga0307472_1005325942 | 3300032205 | Hardwood Forest Soil | VTPEFVSRSFMIIRSSLIIFGMVVGMSISTNAETVKVMDEASTDGSFTI |
| Ga0310914_101529165 | 3300033289 | Soil | VTPQFATRSFMIIRSSMIIFGMVVGMSVSTNAETVKVIDEASTDGSFTIAQTSGMERRGERGTPGRTT |
| Ga0318519_102818771 | 3300033290 | Soil | VTTEFAARSLTIIRSSMIIFGIVVGMSISTNTETVKVMDEASTDGSFTIAQTSGME |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |