Metagenome / Metatranscriptome Family F073742

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073742
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	93 residues
Representative Sequence	VATPRRPDRPEPQFQVEDFFNPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.17 %
% of genes near scaffold ends (potentially truncated)	26.67 %
% of genes from short scaffolds (< 2000 bps)	76.67 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (24.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13545	HTH_Crp_2	15.83
PF02705	K_trans	14.17
PF12836	HHH_3	3.33
PF00072	Response_reg	1.67
PF00989	PAS	1.67
PF06210	DUF1003	1.67
PF11752	DUF3309	1.67
PF13426	PAS_9	1.67
PF01988	VIT1	1.67
PF00202	Aminotran_3	0.83
PF07274	DUF1440	0.83
PF00487	FA_desaturase	0.83
PF13450	NAD_binding_8	0.83
PF02777	Sod_Fe_C	0.83
PF02954	HTH_8	0.83
PF04972	BON	0.83
PF02371	Transposase_20	0.83
PF04333	MlaA	0.83
PF00027	cNMP_binding	0.83
PF08483	Obsolete Pfam Family	0.83
PF00903	Glyoxalase	0.83
PF14417	MEDS	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	14.17
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	1.67
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	1.67
COG4420	Uncharacterized membrane protein	Function unknown [S]	1.67
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.83
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.83
COG2853	Lipoprotein subunit MlaA of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.83
COG3477	Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 family	Function unknown [S]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	70.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	70.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	70.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	66.67 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	66.67 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	66.67 %
Variovorax beijingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax beijingensis	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100951326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300000955\|JGI1027J12803_106848718	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	929	Open in IMG/M
3300001431\|F14TB_101669013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300002899\|JGIcombinedJ43975_10087296	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	560	Open in IMG/M
3300002908\|JGI25382J43887_10251906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	810	Open in IMG/M
3300005093\|Ga0062594_100815109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	866	Open in IMG/M
3300005093\|Ga0062594_101695136	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300005167\|Ga0066672_10443964	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	847	Open in IMG/M
3300005178\|Ga0066688_10069308	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2089	Open in IMG/M
3300005180\|Ga0066685_10024365	All Organisms → cellular organisms → Bacteria	3676	Open in IMG/M
3300005295\|Ga0065707_10525676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	731	Open in IMG/M
3300005295\|Ga0065707_10545497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	725	Open in IMG/M
3300005336\|Ga0070680_101907735	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300005347\|Ga0070668_101885296	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300005353\|Ga0070669_100365600	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1174	Open in IMG/M
3300005353\|Ga0070669_101004116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax beijingensis	716	Open in IMG/M
3300005406\|Ga0070703_10387333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
3300005444\|Ga0070694_100471248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300005445\|Ga0070708_101080920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	751	Open in IMG/M
3300005447\|Ga0066689_10497833	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	768	Open in IMG/M
3300005467\|Ga0070706_100598740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1024	Open in IMG/M
3300005518\|Ga0070699_100192669	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300005536\|Ga0070697_100745377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	865	Open in IMG/M
3300005552\|Ga0066701_10645703	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300005556\|Ga0066707_10272097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1107	Open in IMG/M
3300005561\|Ga0066699_10016589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3906	Open in IMG/M
3300005569\|Ga0066705_10343100	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	943	Open in IMG/M
3300005598\|Ga0066706_10193191	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300005844\|Ga0068862_100451828	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1212	Open in IMG/M
3300006032\|Ga0066696_10407442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	888	Open in IMG/M
3300006049\|Ga0075417_10050552	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300006049\|Ga0075417_10051505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1778	Open in IMG/M
3300006049\|Ga0075417_10433719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300006049\|Ga0075417_10529008	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300006058\|Ga0075432_10186145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	815	Open in IMG/M
3300006196\|Ga0075422_10023493	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2109	Open in IMG/M
3300006577\|Ga0074050_11102836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300006844\|Ga0075428_101118940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	831	Open in IMG/M
3300006845\|Ga0075421_100124851	All Organisms → cellular organisms → Bacteria	3229	Open in IMG/M
3300006845\|Ga0075421_100291414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1987	Open in IMG/M
3300006846\|Ga0075430_101344290	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300006852\|Ga0075433_10020249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	5559	Open in IMG/M
3300006854\|Ga0075425_100189251	All Organisms → cellular organisms → Bacteria	2364	Open in IMG/M
3300006880\|Ga0075429_100131148	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300006880\|Ga0075429_101804495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300006904\|Ga0075424_100061242	All Organisms → cellular organisms → Bacteria	3936	Open in IMG/M
3300006904\|Ga0075424_101219676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	800	Open in IMG/M
3300007076\|Ga0075435_100008455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7386	Open in IMG/M
3300007076\|Ga0075435_101309366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300009012\|Ga0066710_100743520	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300009088\|Ga0099830_10645917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	869	Open in IMG/M
3300009089\|Ga0099828_11436025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300009094\|Ga0111539_10310902	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1834	Open in IMG/M
3300009100\|Ga0075418_13166361	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300009137\|Ga0066709_100308361	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300009143\|Ga0099792_10199245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1138	Open in IMG/M
3300009147\|Ga0114129_10137139	All Organisms → cellular organisms → Bacteria → Proteobacteria	3356	Open in IMG/M
3300009147\|Ga0114129_11311420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	897	Open in IMG/M
3300009553\|Ga0105249_11285623	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	803	Open in IMG/M
3300010336\|Ga0134071_10292961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	816	Open in IMG/M
3300010399\|Ga0134127_10138699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2191	Open in IMG/M
3300012096\|Ga0137389_10007673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7041	Open in IMG/M
3300012199\|Ga0137383_10182531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1538	Open in IMG/M
3300012202\|Ga0137363_10157290	All Organisms → cellular organisms → Bacteria	1790	Open in IMG/M
3300012211\|Ga0137377_10147456	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300012350\|Ga0137372_10376255	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300012356\|Ga0137371_10558459	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	881	Open in IMG/M
3300012930\|Ga0137407_10004186	All Organisms → cellular organisms → Bacteria	9613	Open in IMG/M
3300012972\|Ga0134077_10549597	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300015358\|Ga0134089_10105306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1085	Open in IMG/M
3300015371\|Ga0132258_10806027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2368	Open in IMG/M
3300015374\|Ga0132255_100031506	All Organisms → cellular organisms → Bacteria	6708	Open in IMG/M
3300015374\|Ga0132255_105879144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300017659\|Ga0134083_10502040	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300017792\|Ga0163161_11715588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300018431\|Ga0066655_10038926	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300018468\|Ga0066662_11137151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	784	Open in IMG/M
3300025910\|Ga0207684_10164330	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300025910\|Ga0207684_10171011	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300025917\|Ga0207660_11473277	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300025922\|Ga0207646_10200157	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300025972\|Ga0207668_10596528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	962	Open in IMG/M
3300026075\|Ga0207708_10924140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	756	Open in IMG/M
3300026118\|Ga0207675_100736188	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	997	Open in IMG/M
3300026297\|Ga0209237_1048427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2155	Open in IMG/M
3300026309\|Ga0209055_1007808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5917	Open in IMG/M
3300026317\|Ga0209154_1258774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300026324\|Ga0209470_1202678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300026328\|Ga0209802_1016320	All Organisms → cellular organisms → Bacteria	4195	Open in IMG/M
3300026333\|Ga0209158_1308410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300026529\|Ga0209806_1285747	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300027873\|Ga0209814_10036623	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300027873\|Ga0209814_10061247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1576	Open in IMG/M
3300027873\|Ga0209814_10370685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300027873\|Ga0209814_10427115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300027880\|Ga0209481_10157396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1124	Open in IMG/M
3300027903\|Ga0209488_10101821	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300027903\|Ga0209488_10462908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	933	Open in IMG/M
3300027907\|Ga0207428_10004500	All Organisms → cellular organisms → Bacteria	13221	Open in IMG/M
3300027907\|Ga0207428_10305459	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1177	Open in IMG/M
3300027909\|Ga0209382_11529137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	664	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10012376	All Organisms → cellular organisms → Bacteria	2191	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1025179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1420	Open in IMG/M
3300031538\|Ga0310888_10194547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1111	Open in IMG/M
3300031720\|Ga0307469_10014111	All Organisms → cellular organisms → Bacteria	4075	Open in IMG/M
3300031720\|Ga0307469_10134001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1820	Open in IMG/M
3300031720\|Ga0307469_10279098	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300031720\|Ga0307469_11140905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300031740\|Ga0307468_100000404	All Organisms → cellular organisms → Bacteria	10605	Open in IMG/M
3300031740\|Ga0307468_100145232	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300031740\|Ga0307468_100197394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1356	Open in IMG/M
3300031740\|Ga0307468_100434175	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300031820\|Ga0307473_10386757	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300031892\|Ga0310893_10253858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	729	Open in IMG/M
3300031908\|Ga0310900_10773152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	775	Open in IMG/M
3300032180\|Ga0307471_100733363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1153	Open in IMG/M
3300032180\|Ga0307471_102111258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	708	Open in IMG/M
3300032205\|Ga0307472_100348800	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1214	Open in IMG/M
3300032205\|Ga0307472_100640375	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	945	Open in IMG/M
3300034417\|Ga0364941_094609	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	714	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.83%
Host-Associated	Host-Associated	34.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.83%
Plants	Host-Associated → Plants	34.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.00%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.83%
Loam	Environmental → Terrestrial → Soil → Loam	11.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	1.67%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.67%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1009513262	3300000559	Soil	MKAVATSRRPDRPEPQFQVEDFFNPPRPKLLLWLNTAVRLSALRLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
JGI1027J12803_1068487181	3300000955	Soil	MRLIGLASFSLSVMTDLMRLSLTLVNPHPTGGRSVATPRRPDRPEPQFQVEDVFDRRSSKFLLWLNTAVKLSVLTSDREAEALVASRLFSEEMTVRPEDTLRAAGISSKRQAK
F14TB_1016690132	3300001431	Soil	TPRRPDRPEPQFQIEDFFDPRRSKLLLWLNTAVKLSTLTLDREVEGLAASRLFGEEMTIRPEDTLRSAGISSKRQAKYQRRMSNLLAGRS*
JGIcombinedJ43975_100872961	3300002899	Soil	MATPRRPIRLEPQFQVEDLVTPRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
JGI25382J43887_102519061	3300002908	Grasslands Soil	MRADRLPPDWRKAVATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0062594_1008151091	3300005093	Soil	QRSARLYPAILKPRCDAGIDRSKAVATPRRPDPPEPQCQVEGSFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0062594_1016951362	3300005093	Soil	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLHAAGISTKRQAQYQRRMSSLLAGR*
Ga0066672_104439642	3300005167	Soil	MRKAVATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0066688_100693082	3300005178	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0066685_100243652	3300005180	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKLLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0065707_105256761	3300005295	Switchgrass Rhizosphere	VSIRLIDFDDRMKAVATSRRPDRPEPRFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREAEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0065707_105454971	3300005295	Switchgrass Rhizosphere	MATPRRPIRPEPQFQVEDLVTPRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0070680_1019077351	3300005336	Corn Rhizosphere	VATPRRPDPPEPQCQVEGSFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISTKRQAKYQRRMSNLLAGRS*
Ga0070668_1018852961	3300005347	Switchgrass Rhizosphere	MRLIDFAIGFTFTRQEEGMATPRRPNRPEPQFQVEDLVTSRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQ
Ga0070669_1003656001	3300005353	Switchgrass Rhizosphere	MRLIDFAIGFTFTRQEEGMATPRRPNRPEPQFQVEDLVTSRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0070669_1010041162	3300005353	Switchgrass Rhizosphere	QIEDFLDPRRSKFLLWLNTAVKLSALTLDRREALAASRLCGEDMTVRPEDTLHAAGISSKRQAKYQRRMSNLLAGRS*
Ga0070703_103873332	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	PDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0070694_1004712482	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MATPRRANRPEPQFHVEDLVTSRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0070708_1010809201	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRLKLLLWLNTAAKLRAHLLTLERGVAGEEMTVRPEDTLRAAGISNKRQARYQRRLSSLLAGAYSGDHDRSVRAIVITRSGDRDR*
Ga0066689_104978331	3300005447	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGR
Ga0070706_1005987402	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPERQFPVEDFFDHRRLKLLLWLNTAAKLRARLLTLERGVAGEEMTVRPEDTLRAAGISNKRQARYQRRLSSLLAGR*
Ga0070699_1001926693	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRLKLLLWLNTTAKLRAHLLTLERGVAGEEMTVRPEDTLRAAGISNKRQARYQRRLSSLLAGR*
Ga0070697_1007453771	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGR
Ga0066701_106457031	3300005552	Soil	TPRRPDRPERQFQVEDFFDHRRLKLLLWLNTAAKLRARLLTLERGVAGEEMTVRPEDTLRAAGISNKRQARYQRRLSSLLAGRDFQTGRK*
Ga0066707_102720971	3300005556	Soil	VATPRRPDRPEPQFQVEDFFRPRRSKFLLWLNTAVKLSALTLDRQVEALAASRLFGEELTVRPEDTLRAAGISSKRPAKYQRQMSNLLAGRS*
Ga0066699_100165892	3300005561	Soil	VATPRRPDRPEPQFQVEDFFNPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0066705_103431002	3300005569	Soil	DRPEPQFQVEDFFRPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0066706_101931912	3300005598	Soil	VATPRRPDRPEPQFQAEDFFSPRRPKFLLWLNTAVKLSALTLDREVVEALAASRLLGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0068862_1004518282	3300005844	Switchgrass Rhizosphere	VATPRRPDRPERLFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASPRLAGEEETVRPEDTLRAARISTKRQAQYQRRTSSLLAGR*
Ga0066696_104074422	3300006032	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRPAKYQRQMSNLLAGRS*
Ga0075417_100505522	3300006049	Populus Rhizosphere	VATPRRPDPPEPQCQVEDFFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075417_100515053	3300006049	Populus Rhizosphere	VAIPRRPDPPEPQRQVEGYFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSSLLAGRS*
Ga0075417_104337192	3300006049	Populus Rhizosphere	VSIRLIDFDDRMKTVATSRRPDRPEAQFQVEDFFNPPRPKFLLWFNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLL
Ga0075417_105290081	3300006049	Populus Rhizosphere	VATPRRPDRPEPPFQVEEFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075432_101861452	3300006058	Populus Rhizosphere	MATPRRPNRPEPQFQVEDLVTSRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0075422_100234933	3300006196	Populus Rhizosphere	VATPRRPDPPEPQCQVEGFFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVTPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0074050_111028362	3300006577	Soil	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLRAARISTKRQAQYQRRMSSLLAGR*
Ga0075428_1011189402	3300006844	Populus Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASPRLAGEEETVRPEDTLRAARISTKRQAQYQRRMSSLLAGR*
Ga0075421_1001248514	3300006845	Populus Rhizosphere	VATPRRPDPPEPQCQVEDFFNPRRSKLLLWLNTAVKLSALTLDREVAELAASRLFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075421_1002914143	3300006845	Populus Rhizosphere	VATPRRPDRPEPQFQIEDFFDPRRSKLLLWLNTAVKLSALTLDREVEALAAFRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075430_1013442902	3300006846	Populus Rhizosphere	VAIPRRPDPPEPQRQVEGYFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQ
Ga0075433_100202492	3300006852	Populus Rhizosphere	VSIRLIDFDDRMKTVATSRRPDRPEAQFQVEDFFNPPRPKFLLWFNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075425_1001892513	3300006854	Populus Rhizosphere	VATSRRPDRPEAQFQVEDFFNPPRPKFLLWFNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075429_1001311482	3300006880	Populus Rhizosphere	VAIPRRPDPPEPQRQVEGYFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075429_1018044951	3300006880	Populus Rhizosphere	VATPRRPDRPEPQFQIEDFFDPRRSKLLLWLNTAVKLSALTLDREVEALAAFRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLL
Ga0075424_1000612424	3300006904	Populus Rhizosphere	MRLIDLDDRMKAVATSRRPDRPEPQFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0075424_1012196762	3300006904	Populus Rhizosphere	VATPRRPDRPEPPFQVEEFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLL
Ga0075435_1000084559	3300007076	Populus Rhizosphere	VATSRRPDRPEAQFQVEDFFNPPRPKFLLWFNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLA
Ga0075435_1013093662	3300007076	Populus Rhizosphere	VATPRRPDPPEPQCQVEDFFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLFGEEMTVRTEDTLRAAGISSKRQAKYQRRMSNLL
Ga0066710_1007435202	3300009012	Grasslands Soil	VATPRRPDRPEPQFQVEDFFRPRRSKFLLWLNTAVKLSALTLDRQVEALAASRLFGEELTVRPEDTLRAAGISSKRPAKYQRQMSNLLAGRS
Ga0099830_106459172	3300009088	Vadose Zone Soil	VATPRRPDRPEPQFQGEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR*
Ga0099828_114360252	3300009089	Vadose Zone Soil	VATPRRPDRPESQFQGEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR*
Ga0111539_103109024	3300009094	Populus Rhizosphere	MAAPRRPIRPEPQFQVEDLVTPRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS*
Ga0075418_131663611	3300009100	Populus Rhizosphere	MSRNASAETDFFNPRGSKLLLWLNTAVKLSAFTLNREVEALAAFRRRGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0066709_1003083612	3300009137	Grasslands Soil	VATPRRPDRPEPQFQVEDFFRPRRSKFLLWLNTAVKLSALTLDRQVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0099792_101992452	3300009143	Vadose Zone Soil	VATPRRPDRPESRFQVEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR*
Ga0114129_101371391	3300009147	Populus Rhizosphere	VSIRLIDFDDRMKAVATSRRPDRPEQQFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0114129_113114202	3300009147	Populus Rhizosphere	VATPRPPDRPETRFQVEDFFDPRGSKLLLWLNTAVKLSAFTLNREVEALAAFRRRGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0105249_112856231	3300009553	Switchgrass Rhizosphere	SRRYLRLGLTPVNPHPTGGRAVATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLHAAGISTKRQAQYQRRMSSLLAGR*
Ga0134071_102929611	3300010336	Grasslands Soil	VATPRRPDRPEPQFQVEDFFSPRRSTFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0134127_101386991	3300010399	Terrestrial Soil	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLHAAGISTKRQAQYQRRTSSLLAGR*
Ga0137389_100076738	3300012096	Vadose Zone Soil	VATPRRPDRPEPQFQVEDFFDHRRPKFLLWLNTAVNLHARMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR*
Ga0137383_101825312	3300012199	Vadose Zone Soil	VATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRPAKYQRQMSNLLAG
Ga0137363_101572903	3300012202	Vadose Zone Soil	VATSRRPDRSEPQFQVEDFFNPRRSKFLLWLNTAVRLSALTDREVEALASSRPFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0137377_101474562	3300012211	Vadose Zone Soil	VATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0137372_103762552	3300012350	Vadose Zone Soil	MTDLMRLGLTPVNLHRTGGKAVATPRRPDRPEPQFQVEDLFNPRRAKFLLWLNTAVKLSVLRLDHEVEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSNLLAGRS*
Ga0137371_105584592	3300012356	Vadose Zone Soil	VATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAAISSKRQAKYQRRMSNLLAGRS*
Ga0137407_100041862	3300012930	Vadose Zone Soil	VATPRRPDRSEPQFQVEDFFNPRRSKFLLWLNTAVRLSALTDREVEALASSRPFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0134077_105495972	3300012972	Grasslands Soil	VATPRRPDRPEPQFQAEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0134089_101053062	3300015358	Grasslands Soil	VATPRRPDRPEPQFQVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAACRLFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0132258_108060274	3300015371	Arabidopsis Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASPRLAGEEETVRPEDTLRAARISTKRQAQYQRRMSSLLAWRGSPGPPAARGAGEVRSELN*
Ga0132255_1000315063	3300015374	Arabidopsis Rhizosphere	VAIPRRPDPPEPQRQVEGYFNARRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVTPEDTLRAAGISSKRQAKYQRRMSNLLAGRS*
Ga0132255_1058791441	3300015374	Arabidopsis Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASPRLAGEEEAVRPADTLRAARISTKRQAQYQRRMSSLLAWRGSPGPPAARGAG
Ga0134083_105020402	3300017659	Grasslands Soil	MRADRLPPYWRKAVATPRRPDRPEPQFQVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0163161_117155882	3300017792	Switchgrass Rhizosphere	VATPRRPDPPELQRQVEGYFNPRRSKLLLWLNTAVKLSALTLDRREALAASRLCGEDMTVRPEDTLHAAGISSKRQAKYQR
Ga0066655_100389262	3300018431	Grasslands Soil	VATPRRPYRPEPQFQVEDFFNPRRSKFLLWLNTAVKLSALTLDREVVEALAASRLLGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0066662_111371512	3300018468	Grasslands Soil	VATPRRPDRPEPQFRVEDFFSPRRPKLLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGR
Ga0207684_101643302	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRLKLLLWLNTAAKLRAHLLTLERGVAGEEMTVRPEDTLRAAGISNKRQARYQRRLSSLLAGAYSGDHDRSVRAIVITRSGDRDR
Ga0207684_101710113	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRRMSNLLAGRS
Ga0207660_114732772	3300025917	Corn Rhizosphere	VATPRRPDPPEPQCQVEGSFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISTKRQAKYQRRMSNLLAGRS
Ga0207646_102001571	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRADRLPPDWRKAVATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0207668_105965281	3300025972	Switchgrass Rhizosphere	VATSRRPDRPEPQFQIEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLHAAGISTKRQAQYQRRMSSLLAGR
Ga0207708_109241401	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MATPRRPNRPEPQFQVEDLVTSRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0207675_1007361881	3300026118	Switchgrass Rhizosphere	VAAPRRPDRPEPQFQIEDFLNPRRSKFLLWLNTAARLRARLLTSEVVGEEMTVRPEDTLAEAGISTKRQAKYQRRMSSLLAGR
Ga0209237_10484272	3300026297	Grasslands Soil	VATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAQYQRRMSTLLGMRSGT
Ga0209055_10078082	3300026309	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKLLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209154_12587741	3300026317	Soil	RKAVATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209470_12026782	3300026324	Soil	VATPRRPDRPEPQFQVEDFFRPRRSKFLLWLNTAVKLSALTLDRQVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209802_10163204	3300026328	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209158_13084101	3300026333	Soil	KAVATPRRPDRPEPQFQVEDFFSPRRSKFLLWLNTAVKLSALTLDRQVEALAASRLFGEELTVRPEDTLRAAGISSKRPAKYQRQMSNLLAGRS
Ga0209806_12857471	3300026529	Soil	VATPRRPDRPEPQFRVEDFFSPRRPKLLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLL
Ga0209814_100366233	3300027873	Populus Rhizosphere	VATPRRPDPPEPQCQVEDFFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209814_100612472	3300027873	Populus Rhizosphere	VAIPRRPDPPEPQRQVEGYFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSSLLAGRS
Ga0209814_103706852	3300027873	Populus Rhizosphere	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASPRLAGEEETVRPEDTLRAARISTKRQAQYQRRMSSLLAGR
Ga0209814_104271152	3300027873	Populus Rhizosphere	VATPRRPDRPEPPFQVEEFFSPRRSKFLLWLNTAVKLSALTLDREVEALAASRLFGEELTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209481_101573961	3300027880	Populus Rhizosphere	PDPPEPQCQVEDFLNPRRSKLLLWLNTAVKLSALTLDREVAELAASRLFGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0209488_101018212	3300027903	Vadose Zone Soil	VATPRRPDRPESQFQGEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR
Ga0209488_104629083	3300027903	Vadose Zone Soil	PRRPDRPEPQFQVEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGALAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR
Ga0207428_100045005	3300027907	Populus Rhizosphere	VATPRRPDPPEPQCQVEGFFNPRRSKLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVTPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0207428_103054592	3300027907	Populus Rhizosphere	MAAPRRPIRPEPQFQVEDLVTPRRAKFLLWLNTAVQLSVLRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0209382_115291372	3300027909	Populus Rhizosphere	VATPRRPDRPEPQFQIEDFFDPRRSKLLLWLKTAVKLSALTLDREVEALAAFRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
(restricted) Ga0255310_100123761	3300031197	Sandy Soil	MATPRRRDRSEPQFQVEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGVLAAARLAGEEMTVRPEDTLRAAGISTRR
(restricted) Ga0255312_10251791	3300031248	Sandy Soil	MATPRRRDRSEPQFQVEDFFDHRRPKFLLWLNTAVNLHTRMLTLERGAGVLAAARLAGEEMTVRPEDTLRAAGISTRRQARYQRRMSSLLAGR
Ga0310888_101945471	3300031538	Soil	VATPRRPNPPEPQCQVEGFFNPRRSRLILWLNTAVKLSDLTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0307469_100141113	3300031720	Hardwood Forest Soil	VSIRLIDFDDRMKAVATSRRPDRPEPQFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0307469_101340011	3300031720	Hardwood Forest Soil	PRFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREAEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0307469_102790981	3300031720	Hardwood Forest Soil	VATPRRPDRPEPQFQVEDLFNSRKAKFLLWLNTAVKLSVLRLDREVEALAASRLFGEEMTVRPEDTLRAAGISSERQ
Ga0307469_111409052	3300031720	Hardwood Forest Soil	MATPRRPIRPEPQFQVEDLVTPRRAKFLLWLNTAVQLSVVRLDREAEALAASRLFGEEMTIRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0307468_10000040413	3300031740	Hardwood Forest Soil	VATSRRPDRPEPRFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREAEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0307468_1001452322	3300031740	Hardwood Forest Soil	VATPRRPDRPEPQFQVEDLFNSRKAKFLLWLNTAVKLSVLRLDREVEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSNLLAGRS
Ga0307468_1001973945	3300031740	Hardwood Forest Soil	VATPRRPDRPERQFQVEDFFDHRRPKFLLWVNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDALRAARISTKRQAQYQRRMSSLLAGR
Ga0307468_1004341752	3300031740	Hardwood Forest Soil	VSIRLIDFDDRMKAVATSRRPQRPEPQFQVEDFFNPSRPKFLLWLNTAVKLSALRLDREVEALAASRLFVEEITVRPEDTLRAAGISSKRQARYQRRMSNLLAGRS
Ga0307473_103867572	3300031820	Hardwood Forest Soil	VAKPQRPNHREPQVQVEDLFDHRRPKLLLWLNTVVKIPRRTLTLEPGAAALTAAQRLAGEEETVRPEDTLRAAGISTMRQAQYQRRMSNLLAGR
Ga0310893_102538581	3300031892	Soil	VATPRRPNPPEPQCQVEGFFNPRRSRLLLWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSKRQAKYQRRMSNLLAGRS
Ga0310900_107731521	3300031908	Soil	VATPRRPNPPEPQCQVEGFFNPRRSRLILWLNTAVKLSALTLDREVAGLAASRLCGEEMTVRPEDTLRAAGISSK
Ga0307471_1007333634	3300032180	Hardwood Forest Soil	EPRFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREAEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSKLLAERS
Ga0307471_1021112582	3300032180	Hardwood Forest Soil	VATPRRPDRPERQFQVEDFFDHRRPKFLLWLNTAVNLHTRMLALEPGVGALAASQRLAGEEETVRPEDTLRAAGISTKRQAQYQRRMSSLLAGR
Ga0307472_1003488003	3300032205	Hardwood Forest Soil	VSIRLIDFDDRMKAVATSRRPDRPEPQFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREVEALAASRLFVEEMTVRPEDTLRAAGISSKRQAQYQRRMSNLLSGRS
Ga0307472_1006403753	3300032205	Hardwood Forest Soil	KAVATSRRPDRPEPRFQVEDFFNPRRPKFLLWLNTAVKLSALTLDREAEALAASRLFGEEMTVRPEDTLRAAGISSERQAKYQRQMSKLLAGRS
Ga0364941_094609_132_410	3300034417	Sediment	VATPRRRDRPDSQFQVEDFFTPRRAKFLLWLNTAVQLSVLGLDRETEALAAPPLFGEEMTVRPEDTLRAAGISSERQAKYQRRMSNLLAGRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters