Metagenome / Metatranscriptome Family F073737

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073737
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	47 residues
Representative Sequence	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVARQEQI
Number of Associated Samples	107
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.60 %
% of genes near scaffold ends (potentially truncated)	85.83 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.500 % of family members)
Environment Ontology (ENVO)	Unclassified (34.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.46% β-sheet: 0.00% Coil/Unstructured: 40.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01243	Putative_PNPOx	13.33
PF02738	MoCoBD_1	12.50
PF13561	adh_short_C2	6.67
PF00296	Bac_luciferase	4.17
PF13354	Beta-lactamase2	3.33
PF06689	zf-C4_ClpX	0.83
PF07732	Cu-oxidase_3	0.83
PF00529	CusB_dom_1	0.83
PF02543	Carbam_trans_N	0.83
PF16861	Carbam_trans_C	0.83
PF08241	Methyltransf_11	0.83
PF08386	Abhydrolase_4	0.83
PF00441	Acyl-CoA_dh_1	0.83
PF01432	Peptidase_M3	0.83
PF00254	FKBP_C	0.83
PF13231	PMT_2	0.83
PF01425	Amidase	0.83
PF07687	M20_dimer	0.83
PF13533	Biotin_lipoyl_2	0.83
PF07969	Amidohydro_3	0.83
PF02129	Peptidase_S15	0.83
PF14559	TPR_19	0.83
PF13280	WYL	0.83
PF13180	PDZ_2	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF13439	Glyco_transf_4	0.83
PF01596	Methyltransf_3	0.83
PF12680	SnoaL_2	0.83
PF00034	Cytochrom_C	0.83
PF01557	FAA_hydrolase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.17
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.83
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.83
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.83
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.83
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.83
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.50 %
Unclassified	root	N/A	6.67 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.50 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	40.00 %
Unclassified	root	N/A	6.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	39.17 %
Unclassified	root	N/A	6.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.83 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	29.17 %
Unclassified	root	N/A	6.67 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	27.50 %
Unclassified	root	N/A	6.67 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Candidatus Rokubacteria bacterium 13_1_40CM_4_67_11	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_67_11	1.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.83 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1023211	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1008617	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300000955\|JGI1027J12803_100339172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1805	Open in IMG/M
3300002560\|JGI25383J37093_10022507	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300002562\|JGI25382J37095_10013595	All Organisms → cellular organisms → Bacteria	3088	Open in IMG/M
3300004268\|Ga0066398_10157255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300004633\|Ga0066395_10152472	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1172	Open in IMG/M
3300005167\|Ga0066672_10312350	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005171\|Ga0066677_10396757	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005176\|Ga0066679_10750889	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005271\|Ga0065713_1013318	Not Available	500	Open in IMG/M
3300005334\|Ga0068869_101097139	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005356\|Ga0070674_102147226	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	510	Open in IMG/M
3300005545\|Ga0070695_100516197	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300005546\|Ga0070696_100389067	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300005558\|Ga0066698_10411158	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300005559\|Ga0066700_10064102	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300005564\|Ga0070664_101516903	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005569\|Ga0066705_10551162	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300005598\|Ga0066706_11391802	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005618\|Ga0068864_102066331	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005713\|Ga0066905_100941310	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	758	Open in IMG/M
3300005719\|Ga0068861_102534595	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005764\|Ga0066903_100561440	All Organisms → cellular organisms → Bacteria	1962	Open in IMG/M
3300006031\|Ga0066651_10813026	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300006049\|Ga0075417_10143539	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300006058\|Ga0075432_10137006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	931	Open in IMG/M
3300006196\|Ga0075422_10086200	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300006358\|Ga0068871_100895641	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300006796\|Ga0066665_11001312	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006844\|Ga0075428_101173033	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300006852\|Ga0075433_10621743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300006871\|Ga0075434_100014383	All Organisms → cellular organisms → Bacteria	7563	Open in IMG/M
3300006880\|Ga0075429_100763455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	847	Open in IMG/M
3300006881\|Ga0068865_101069456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300006904\|Ga0075424_101074461	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300007265\|Ga0099794_10038014	All Organisms → cellular organisms → Bacteria	2280	Open in IMG/M
3300009012\|Ga0066710_102217962	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300009012\|Ga0066710_102624303	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	723	Open in IMG/M
3300009038\|Ga0099829_10989803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	697	Open in IMG/M
3300009137\|Ga0066709_100349284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2032	Open in IMG/M
3300009137\|Ga0066709_100649272	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1510	Open in IMG/M
3300009147\|Ga0114129_12923944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300009176\|Ga0105242_12867354	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	533	Open in IMG/M
3300010047\|Ga0126382_10592892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	910	Open in IMG/M
3300010304\|Ga0134088_10228090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	894	Open in IMG/M
3300010361\|Ga0126378_11017229	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300010362\|Ga0126377_10278308	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1641	Open in IMG/M
3300010362\|Ga0126377_11508540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	746	Open in IMG/M
3300010400\|Ga0134122_10018682	All Organisms → cellular organisms → Bacteria → Proteobacteria	5193	Open in IMG/M
3300012200\|Ga0137382_10392425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	977	Open in IMG/M
3300012202\|Ga0137363_11591023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300012206\|Ga0137380_11416683	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300012349\|Ga0137387_10413423	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300012582\|Ga0137358_10262229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1175	Open in IMG/M
3300012582\|Ga0137358_10381299	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	954	Open in IMG/M
3300012923\|Ga0137359_11113218	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300012925\|Ga0137419_10382413	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1096	Open in IMG/M
3300012925\|Ga0137419_10605164	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300012925\|Ga0137419_11499589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300012972\|Ga0134077_10259976	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	721	Open in IMG/M
3300015054\|Ga0137420_1400594	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	844	Open in IMG/M
3300015241\|Ga0137418_11304572	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_67_11	506	Open in IMG/M
3300015245\|Ga0137409_10022444	All Organisms → cellular organisms → Bacteria → Proteobacteria	6192	Open in IMG/M
3300015245\|Ga0137409_10071802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3244	Open in IMG/M
3300015357\|Ga0134072_10185476	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	710	Open in IMG/M
3300015373\|Ga0132257_104645238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300016387\|Ga0182040_10075096	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2207	Open in IMG/M
3300018052\|Ga0184638_1265918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	586	Open in IMG/M
3300018056\|Ga0184623_10508450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	513	Open in IMG/M
3300018075\|Ga0184632_10425024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	554	Open in IMG/M
3300018082\|Ga0184639_10006725	All Organisms → cellular organisms → Bacteria → Proteobacteria	5392	Open in IMG/M
3300018468\|Ga0066662_11047573	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300019259\|Ga0184646_1265741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1077	Open in IMG/M
3300019789\|Ga0137408_1008739	All Organisms → cellular organisms → Bacteria → Proteobacteria	2413	Open in IMG/M
3300020170\|Ga0179594_10354736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	556	Open in IMG/M
3300020199\|Ga0179592_10195442	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_67_11	918	Open in IMG/M
3300021090\|Ga0210377_10062218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2556	Open in IMG/M
3300025937\|Ga0207669_10692565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	837	Open in IMG/M
3300025938\|Ga0207704_10915968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	738	Open in IMG/M
3300025942\|Ga0207689_10894542	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300026035\|Ga0207703_11015302	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	796	Open in IMG/M
3300026317\|Ga0209154_1172468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	875	Open in IMG/M
3300026326\|Ga0209801_1258074	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300026523\|Ga0209808_1088278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1326	Open in IMG/M
3300026548\|Ga0209161_10476489	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300026550\|Ga0209474_10218131	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300026550\|Ga0209474_10448632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	656	Open in IMG/M
3300027561\|Ga0209887_1096513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	600	Open in IMG/M
3300027671\|Ga0209588_1253353	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300027748\|Ga0209689_1050151	All Organisms → cellular organisms → Bacteria	2345	Open in IMG/M
3300027873\|Ga0209814_10126958	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300027874\|Ga0209465_10248195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	890	Open in IMG/M
3300027880\|Ga0209481_10305184	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300027902\|Ga0209048_10240708	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300027907\|Ga0207428_11189312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300028536\|Ga0137415_10045080	All Organisms → cellular organisms → Bacteria → Proteobacteria	4298	Open in IMG/M
3300030620\|Ga0302046_10375009	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1005134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2553	Open in IMG/M
3300031184\|Ga0307499_10083513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	847	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1034708	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1206	Open in IMG/M
3300031455\|Ga0307505_10387006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	664	Open in IMG/M
3300031720\|Ga0307469_10065438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2377	Open in IMG/M
3300031720\|Ga0307469_10197042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1568	Open in IMG/M
3300031720\|Ga0307469_11900283	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300031796\|Ga0318576_10567821	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300031945\|Ga0310913_11008717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300032039\|Ga0318559_10481213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	579	Open in IMG/M
3300032043\|Ga0318556_10726826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300032180\|Ga0307471_100009552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6433	Open in IMG/M
3300032205\|Ga0307472_102587225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300033416\|Ga0316622_100811379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300033513\|Ga0316628_102951133	Not Available	623	Open in IMG/M
3300034085\|Ga0373908_092456	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.50%
Host-Associated	Host-Associated	21.67%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.83%
Plants	Host-Associated → Plants	21.67%
Aquatic	Environmental → Aquatic	6.67%
Bioremediation	Engineered → Bioremediation	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.67%
Freshwater	Environmental → Aquatic → Freshwater	3.33%
Sediment	Environmental → Aquatic → Sediment	3.33%
Roots	Host-Associated → Plants → Roots	0.83%
Metal	Engineered → Bioremediation → Metal	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.67%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.67%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005271	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034085	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
KanNP_Total_noBrdU_T14TCDRAFT_10232112	3300000596	Soil	MESDEIQKLLREIRDTQREHLAEYRQVTQRSLELQQRAVARQ
KanNP_Total_F14TBDRAFT_10086172	3300000709	Soil	MESDEIQKLLREIRDTQREHLAEYRQVTQRSLELQQRAVARQEQIG
JGI1027J12803_1003391723	3300000955	Soil	MQSDDDVRQLLRDIRDAQREQLAEHRGVMDRVLELQRRA
JGI25383J37093_100225071	3300002560	Grasslands Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVARQEQI
JGI25382J37095_100135953	3300002562	Grasslands Soil	MDSEEEIRQLLRDIRDAQREHLAEYRRVAERSLELQQRAVARQEQM
Ga0066398_101572552	3300004268	Tropical Forest Soil	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQQRAVARQEQIGRF
Ga0066395_101524721	3300004633	Tropical Forest Soil	MDKDDDVRHLLRDIRDAQRDQLAEYRGLLERVLELQQRAVAQ
Ga0066672_103123503	3300005167	Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGQLYRRLMLVGGVL
Ga0066677_103967571	3300005171	Soil	MERDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIG
Ga0066679_107508892	3300005176	Soil	MEGDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRRL
Ga0065713_10133182	3300005271	Miscanthus Rhizosphere	VPESDEVKELLTEIRDLQREQLAHYRQVTQRSLELQQQAEKE
Ga0068869_1010971391	3300005334	Miscanthus Rhizosphere	MDNDDRVVTLLQEIRDAQREHLAEYRKVAQRSVELQEEAVARQQNYGNMYR
Ga0070674_1021472262	3300005356	Miscanthus Rhizosphere	MDNDEIGRLLQETRDTQREHLAEYRRVTERSLELQQRAVTRQEQFGNLYRRILAVGGG
Ga0070695_1005161973	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MEAGDGIRRLLEEIRDLQREHLEEYRKVTTRSLELQQRAVAKQEQFGGVYRKAVLVS
Ga0070696_1003890671	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKETDEIKQLLSEIRDLQRESLGEYRRVTQRSLDLQQQAVTRQ
Ga0066698_104111581	3300005558	Soil	VTDDEVRQLLRDIRDAQREQLAEYRRVTERSLELQQRAVTRQEQLGQVYRRLMA
Ga0066698_105635201	3300005558	Soil	VNEDDEIRQLLRDIRDAQREHGAEYRRVTERLVELQERAVTQQEQLGGLYRRL
Ga0066700_100641023	3300005559	Soil	MERDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRYLFATGIVGVG*
Ga0070664_1015169032	3300005564	Corn Rhizosphere	MQESQEIKELLKEIRDGQKEHLAEYRRVAERSLELQQQAVARQEK
Ga0066705_105511621	3300005569	Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTR
Ga0066706_113918022	3300005598	Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQR
Ga0068864_1020663312	3300005618	Switchgrass Rhizosphere	MDNDDRVVTLLQEIRDAQREHLAEYRKVAQRSVELQEEAVARQQNYGNMYRRIVA
Ga0066905_1009413101	3300005713	Tropical Forest Soil	MDKDDDVRHLLRDIRDAQRDQLAEYRGLVERVLEL
Ga0068861_1025345952	3300005719	Switchgrass Rhizosphere	MDGGDEIRQLLREIRDAQREHLAEYRRVADRSLELQQRAVARQEQIGQLSRRLIGVGGILVVALFA
Ga0066903_1005614401	3300005764	Tropical Forest Soil	MDSDDDVRHLLRDIRDAQRDQLAEYRTLLERVLELQQRAV
Ga0066651_108130262	3300006031	Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQ
Ga0075417_101435391	3300006049	Populus Rhizosphere	MDDGNEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVARQE
Ga0075432_101370061	3300006058	Populus Rhizosphere	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQHRAVARQEQIGRFT
Ga0075422_100862003	3300006196	Populus Rhizosphere	MDGSDEIRQLLREIRDTQREQLAEYRKVAERSLELQQRA
Ga0068871_1008956411	3300006358	Miscanthus Rhizosphere	MDNDDRVVTLLQEIRDAQREHLAEYRKVAQRSVELQEEAVARQQNYG
Ga0066665_110013122	3300006796	Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVAR
Ga0075428_1011730332	3300006844	Populus Rhizosphere	MNGDPEIRQLLTEIRDTQREHLAEYRRVTERSLELQQRAVARQ
Ga0075433_106217433	3300006852	Populus Rhizosphere	MQNSDEIKKILVEIRDAQIEQLAEYRKVTQRSLELQEKAV
Ga0075434_1000143835	3300006871	Populus Rhizosphere	MQSDDDVRQLLRDIRDAQREQLAEHRGVMDRVLELQRRAVVQQEQ
Ga0075429_1007634553	3300006880	Populus Rhizosphere	MTDVQGDDIRQLLREIRDAQREQLAEYRRVTERSLEL
Ga0068865_1010694562	3300006881	Miscanthus Rhizosphere	MQSDDDVRQLLRDIRDAQREQLAEHRSVMDRVLELQR
Ga0075424_1010744611	3300006904	Populus Rhizosphere	MTSEEELRRLLTEIRDIQRDHLAEYRRVTERSLDLQQRA
Ga0099794_100380143	3300007265	Vadose Zone Soil	MERDDETHRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRYLFVTGIVGVG*
Ga0066710_1022179621	3300009012	Grasslands Soil	MEGDAIQKLLREIRDTQREHLAEYRQVTQRSLELQQR
Ga0066710_1026243032	3300009012	Grasslands Soil	MEESDELKLLTEIRDAQREHLTEYRKVAQESLALQKQAVARQEQIAKLYRAWL
Ga0099829_109898031	3300009038	Vadose Zone Soil	MEGEEEIRQLLREIRDTQREHLAEYRRVAERTLDLQQRALAGREQLSRVSVTQQFW*
Ga0066709_1003492841	3300009137	Grasslands Soil	MTSEGEVRVLLREIRDTQREHLAEYRRVTERSLDLQQRA
Ga0066709_1006492721	3300009137	Grasslands Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQ
Ga0114129_129239442	3300009147	Populus Rhizosphere	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQHR
Ga0105242_106320771	3300009176	Miscanthus Rhizosphere	MEESDQLKLLTEIRDAQREHLAEYRKVTQESLALQKQAVARQEQI
Ga0105242_128673542	3300009176	Miscanthus Rhizosphere	MDNDDRVVTLLQEIRDAQREHLAEYRKVAQRSVELQEEAVARQQNY
Ga0126380_115476732	3300010043	Tropical Forest Soil	MEQSDELKLLTEIRDAQREHLAEYRKVTEESLALQRQAV
Ga0126382_105928921	3300010047	Tropical Forest Soil	MDKDDDVGHLLRDIRDAQRDQLAEYRGLVERVLELQQ
Ga0134088_102280901	3300010304	Grasslands Soil	VESGDEIRRLLQEIRDIDREHLDEYRRVTTKSLELQQRAVARQ
Ga0126378_110172293	3300010361	Tropical Forest Soil	MDDDEIRQLLREIRDAQREHLAEYRRVTERSLELQQRAVARQEQFGHVYRRMA
Ga0126377_102783083	3300010362	Tropical Forest Soil	MEGDEIQKVLREIRDTQREHLAEYRSVTQRSLELQQRAVARQEQIGRF
Ga0126377_115085401	3300010362	Tropical Forest Soil	MNEDETQKLLREIRDTQREHLAEYRSVTQRSLDLQQRAVARQEQI
Ga0134122_100186821	3300010400	Terrestrial Soil	MDGGDEIRQLLREIRDAQREHLAEYRRVADRSLELQQRAVARQEQISQL
Ga0137382_103924252	3300012200	Vadose Zone Soil	MDNDEIGRLLQEIRDTQREHLAEYRRVTERSLELQQRAVTRQEQFGHLYRRIL
Ga0137363_115910231	3300012202	Vadose Zone Soil	MQSDDDVRQLLRDIRDAQREQLAEHRGVMDRVLELLRRAV
Ga0137380_114166831	3300012206	Vadose Zone Soil	MENDDEVRQLFRDIRDAHREQLAEYRRVTERSFELQQRAVA
Ga0137387_104134231	3300012349	Vadose Zone Soil	MEGDEIQTLRREIRATQREHLAEYRQVTQRSLELQQRAVTRQEQIGRFTRQIVLAGG
Ga0137358_102622293	3300012582	Vadose Zone Soil	MECDDETRRLLGEIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHRYRYLFVTGIVGVG*
Ga0137358_103812992	3300012582	Vadose Zone Soil	MERDDETRQLLREIRGAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRYLFVTGIVGVG*
Ga0137359_111132183	3300012923	Vadose Zone Soil	MDSENEVRQLLKEILDTQREHLAEYRRVTQRSLELQQRAVARQEQM
Ga0137419_103824133	3300012925	Vadose Zone Soil	MERDDETRRLLREIRDAQREQLAEYRRATERSLELQQRAVAR*
Ga0137419_106051643	3300012925	Vadose Zone Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHVYRRLV
Ga0137419_114995891	3300012925	Vadose Zone Soil	VPGPGNDDDEIRHLLRDIRDAQREHGAEYRRVTERLVELQERAV
Ga0134077_102599762	3300012972	Grasslands Soil	MEGDEIRQLLKEIRDTQREHLAEYRRVTERSLELQQRAVARQE
Ga0137420_14005943	3300015054	Vadose Zone Soil	MERDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLY
Ga0137418_113045721	3300015241	Vadose Zone Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHVYRRLVTV
Ga0137409_100224448	3300015245	Vadose Zone Soil	MEAGDEVRRLLEEIRDLQREHLEEYRRVTTRSLELQQRAVTRQE
Ga0137409_100718026	3300015245	Vadose Zone Soil	MEAGDEARRLLEEIRDLQREHLAEYRKVTERSLELQQRAV
Ga0134072_101854761	3300015357	Grasslands Soil	MERDDETRRLLREIRDAQREQLDEYRRVTERSLELQQRAVTRQEQIGHLYRRLMLVGGVLVAALL
Ga0132257_1046452382	3300015373	Arabidopsis Rhizosphere	MTDVQGDDIRQLLREIRDAQREQLAEYRRVTERSLDLQQRAVGR
Ga0182040_100750961	3300016387	Soil	MDSDDDVRQLLRDIRDAQRDQLAEYRALFERVLDLQQRAVA
Ga0184638_12659182	3300018052	Groundwater Sediment	MDSDDEIRQLLRDIRDAQREHLAECRRVTERSLELQQRAVAQQEQ
Ga0184623_105084501	3300018056	Groundwater Sediment	MESDDEISQLLRDIRDAQREHLAESRRVTERSLELQQRAVAQQ
Ga0184632_104250242	3300018075	Groundwater Sediment	MDSDDEIRQLLRDIRDAQREHLAECRRVTERSLELQQRAVAQQEQMSHL
Ga0184639_100067251	3300018082	Groundwater Sediment	MESDDEISQLLRDIRDAQREHLAESRRVTERSLELQQRAVAQQEQMSHL
Ga0066662_110475731	3300018468	Grasslands Soil	MERDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRSVTRQEQIGHLYRRLML
Ga0066662_113551692	3300018468	Grasslands Soil	MDESDQIKILAEIRDVQREHLAEYRKVAQQSLALQQQ
Ga0184646_12657411	3300019259	Groundwater Sediment	MDSDDEISQLLRDIRDAQREHLAECRRVTERSLELQQRAVAQQEQM
Ga0137408_10087391	3300019789	Vadose Zone Soil	MEGGDEIRQLLREIRDAQREQLAEYRRVTERSLELQQRAVARQEQIGHPPGRSRSA
Ga0179594_103547361	3300020170	Vadose Zone Soil	VNDDDEIRQLLRDIRDAQREHGAEYRRVTERLVELQERAVT
Ga0179592_101954423	3300020199	Vadose Zone Soil	MECDDETRRLLGEIRDAQREQLAEYRRVTERSLELQQRAGTRQE
Ga0210377_100622184	3300021090	Groundwater Sediment	MEADEDTRRLLEEIRDAQREYLVEYRRVTQQSLELQQRAVDRQSKSA
Ga0207669_106925652	3300025937	Miscanthus Rhizosphere	MDSDEIGPLLQEIRDTQREHLAEYRRVTERSLELQQRAVTRQEQFGHLY
Ga0207704_109159681	3300025938	Miscanthus Rhizosphere	MQSDDDVRQLLRDIRDAQREQLAEHRSVMDRVLELQRRAVVQQ
Ga0207689_108945421	3300025942	Miscanthus Rhizosphere	MDNDDRVVTLLQEIRDAQREHLAEYRKVAQRSVELQEEAVARQQN
Ga0207703_110153022	3300026035	Switchgrass Rhizosphere	MQSDDDVRQLLRDIRDAQREQLAEHRSVMDRVLEIQR
Ga0209154_11724681	3300026317	Soil	MEGDEIRQLLKEIRDTQREHLAEYRRVTERSLELQQRAVARQEQMAT
Ga0209801_12580742	3300026326	Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGQLYR
Ga0209808_10882783	3300026523	Soil	MEGDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRRLLLVGGVL
Ga0209161_104764892	3300026548	Soil	MESDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVT
Ga0209474_102181311	3300026550	Soil	MERDDETRRLLREIRDAQREQLDEYRRVTERSLELQQRAVTRQEQIGHLYRRLMLVGGVL
Ga0209474_104486321	3300026550	Soil	MTSEGEVRVLLREIRDTQREHLAEYRRVTERSPDLQQRAVARQ
Ga0209887_10965131	3300027561	Groundwater Sand	MESDDELRLLLRDIRDAQREHLVECRRVTERSLELQQRAVAQQEQL
Ga0209588_12533531	3300027671	Vadose Zone Soil	MERDDETHRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRYLFVTGIVGVG
Ga0209689_10501513	3300027748	Soil	MERDDETRRLLREIRDAQREQLAEYRRVTERSLELQQRAVTRQEQIGHLYRYLFATGIVGVG
Ga0209397_105294842	3300027871	Wetland	MEGDDRTHSLLEEIRDAQRDHLAEYRRVTQRSLDLQQRAVDRQQELGRLYR
Ga0209814_101269581	3300027873	Populus Rhizosphere	MDDGNEIRQLLREIRDAQREQLAEYRRVTERSLELQ
Ga0209465_102481952	3300027874	Tropical Forest Soil	MDKDDDVRHLLRDIRDAQRDQLAEYRGLLERVLELQQRAVAQG
Ga0209481_103051841	3300027880	Populus Rhizosphere	MDGSDEIRQLLREIRDTQREQLAEYRKVAERSLELQQRAVARQEQIGHFSRRLMVG
Ga0209048_102407082	3300027902	Freshwater Lake Sediment	MEADGHTHQLLEEIRDAQREYLAKYRRVTQQSLELQQRAVARQEQVSLI
Ga0207428_111893122	3300027907	Populus Rhizosphere	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQHRAVARQEQI
Ga0137415_100450804	3300028536	Vadose Zone Soil	MDSDEIRQLLKEIRDTQREHLAEYRRVTERSLDLQQRAVARQEQIANVYRRLL
Ga0247822_109808691	3300028592	Soil	MTSPDGDEIQKLLSEIRDTQREHLAEYKSVTQRSLELQQRAVARQEQIRRFTRQIVLVGG
Ga0302046_103750092	3300030620	Soil	MQDSEEIKKLLIEIRDAQLEQLAEYRRVTQRSLELQQQAVT
(restricted) Ga0255311_10051342	3300031150	Sandy Soil	MDSENEIRQLLKDIRDTQREHLAEYRRVTERSLELQQRAV
Ga0307499_100835132	3300031184	Soil	MDNDEIGRLLQEIRDIQREHLAEYRRVTERSLELQQRAVTRQEQFGHLYRRILVVGGGMVAILLV
(restricted) Ga0255312_10347081	3300031248	Sandy Soil	MDSENEIRQLLKDIRDTQREDLAEYRRVTERSLELQQRAVTRQEQM
Ga0307505_103870062	3300031455	Soil	MENDEIGRLLQEIRDTQREHLAEYRRVTERSLELQQRAVTRQEQFGHLYRRILV
Ga0307469_100654381	3300031720	Hardwood Forest Soil	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQQRAVARQEQIGRFTR
Ga0307469_101970422	3300031720	Hardwood Forest Soil	MEGDEIRTLLREIRDTQREHLAEYRQVTQRSLELQQ
Ga0307469_119002832	3300031720	Hardwood Forest Soil	MDNDAIGRLLQEIRDTQREHLAEYRRVTERSLELQQRAV
Ga0318576_105678212	3300031796	Soil	MDSDDDVRQLLRDIRDAQRDQLAEYRALFERVLDLQQRAVAQQE
Ga0310913_110087171	3300031945	Soil	MDSDDDVRQLLRDIRDAQRDQLAEYRALFERVLELQQRAVAQQEQASRLY
Ga0318559_104812132	3300032039	Soil	MDSDDDVRQLLRDIRDAQRDQLAEYRALFERVLELQQRAVAQQEQAS
Ga0318556_107268261	3300032043	Soil	MDSDDDVRQLLRDIRDAQRDQLAEYRALFERVLDLQ
Ga0307471_1000095521	3300032180	Hardwood Forest Soil	MEGDEIQKLLREIRDTQREHLAEYRSVTQRSLELQQRAVARQEQIGRFT
Ga0307472_1025872252	3300032205	Hardwood Forest Soil	MTDVQGDDIRQLLREIRDAQREQLAEYRRVTERSL
Ga0316622_1008113791	3300033416	Soil	MERDEEIRKLLQDIRDAQREHLAEYRRVAERSLEIQERAVARQEQAG
Ga0316628_1029511332	3300033513	Soil	MDQDEEIRKLLQDIRDAQREHLAEYRRVAERSLEIQERAVARQEQAGRLVRQI
Ga0373908_092456_457_594	3300034085	Sediment Slurry	MEADEHTHRLLEEIRDAQREHLAEYRRVTRQSLELQQRAVARQEQI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters