Metagenome / Metatranscriptome Family F073729

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073729
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	54 residues
Representative Sequence	PLDGDVRAAWATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD
Number of Associated Samples	107
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.67 %
% of genes near scaffold ends (potentially truncated)	92.50 %
% of genes from short scaffolds (< 2000 bps)	94.17 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (92.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (22.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.16% β-sheet: 12.35% Coil/Unstructured: 60.49%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02566	OsmC	43.33
PF12002	MgsA_C	17.50
PF12850	Metallophos_2	9.17
PF13442	Cytochrome_CBB3	8.33
PF00149	Metallophos	5.83
PF16193	AAA_assoc_2	4.17
PF01546	Peptidase_M20	1.67
PF07136	DUF1385	0.83
PF13489	Methyltransf_23	0.83
PF02823	ATP-synt_DE_N	0.83
PF01797	Y1_Tnp	0.83
PF01661	Macro	0.83
PF00491	Arginase	0.83
PF07366	SnoaL	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	43.33
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	43.33
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.83
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.83
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.83
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	0.83
COG3872	Uncharacterized conserved protein YqhQ, DUF1385 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	67.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.83 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.83 %
Unclassified	root	N/A	7.50 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5.83 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	19.17 %
Unclassified	root	N/A	7.50 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.00 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.17 %
Unclassified	root	N/A	7.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.17 %
Unclassified	root	N/A	7.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.17 %
Unclassified	root	N/A	7.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.83 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102268907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	903	Open in IMG/M
3300000956\|JGI10216J12902_114561850	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300001431\|F14TB_101561189	All Organisms → cellular organisms → Bacteria → Terrabacteria group	581	Open in IMG/M
3300001536\|A1565W1_10606449	All Organisms → cellular organisms → Bacteria → Terrabacteria group	650	Open in IMG/M
3300003373\|JGI25407J50210_10112682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
3300003373\|JGI25407J50210_10158115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300004156\|Ga0062589_101860627	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300004463\|Ga0063356_105954369	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300004643\|Ga0062591_100424337	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300005093\|Ga0062594_102513333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300005175\|Ga0066673_10441223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300005176\|Ga0066679_10926897	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005179\|Ga0066684_10142575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1513	Open in IMG/M
3300005332\|Ga0066388_101817554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1084	Open in IMG/M
3300005332\|Ga0066388_104539926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300005436\|Ga0070713_101507307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	653	Open in IMG/M
3300005438\|Ga0070701_10740567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300005439\|Ga0070711_100155317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1729	Open in IMG/M
3300005450\|Ga0066682_10870361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300005451\|Ga0066681_10169275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1294	Open in IMG/M
3300005451\|Ga0066681_10434881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M
3300005451\|Ga0066681_10518152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	736	Open in IMG/M
3300005455\|Ga0070663_101485489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300005507\|Ga0074259_10419598	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300005549\|Ga0070704_101858726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300005553\|Ga0066695_10240694	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300005558\|Ga0066698_10150550	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300005560\|Ga0066670_10862180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	550	Open in IMG/M
3300005564\|Ga0070664_100036736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4116	Open in IMG/M
3300005618\|Ga0068864_100218108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1759	Open in IMG/M
3300005719\|Ga0068861_100825617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	872	Open in IMG/M
3300005981\|Ga0081538_10046497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2675	Open in IMG/M
3300006028\|Ga0070717_10052074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3371	Open in IMG/M
3300006031\|Ga0066651_10426545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300006031\|Ga0066651_10475864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	662	Open in IMG/M
3300006032\|Ga0066696_10463293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300006046\|Ga0066652_101491343	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300006196\|Ga0075422_10402113	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300006603\|Ga0074064_11518154	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300006871\|Ga0075434_101305543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300006871\|Ga0075434_101335382	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300006904\|Ga0075424_100004039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13810	Open in IMG/M
3300006954\|Ga0079219_11050224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	683	Open in IMG/M
3300006954\|Ga0079219_11547812	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300009012\|Ga0066710_102123191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
3300009012\|Ga0066710_104012509	Not Available	551	Open in IMG/M
3300009088\|Ga0099830_11617022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300009090\|Ga0099827_10430251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1130	Open in IMG/M
3300009098\|Ga0105245_11252587	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300009137\|Ga0066709_103086846	Not Available	609	Open in IMG/M
3300009156\|Ga0111538_13892682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300009162\|Ga0075423_12989348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300009840\|Ga0126313_10491248	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300009840\|Ga0126313_10609434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300010038\|Ga0126315_10051812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2230	Open in IMG/M
3300010301\|Ga0134070_10101705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1002	Open in IMG/M
3300010326\|Ga0134065_10300965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300010360\|Ga0126372_12552530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300010362\|Ga0126377_11916280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300010366\|Ga0126379_11225861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300010371\|Ga0134125_10101687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3200	Open in IMG/M
3300011119\|Ga0105246_11634989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300012021\|Ga0120192_10087340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300012045\|Ga0136623_10107874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1214	Open in IMG/M
3300012045\|Ga0136623_10321642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300012353\|Ga0137367_10917976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300012469\|Ga0150984_115839548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300012532\|Ga0137373_11039077	Not Available	590	Open in IMG/M
3300012684\|Ga0136614_10227084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1401	Open in IMG/M
3300012893\|Ga0157284_10085149	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012911\|Ga0157301_10064849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	984	Open in IMG/M
3300012951\|Ga0164300_10306797	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300012951\|Ga0164300_10499493	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300012955\|Ga0164298_11395945	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300012957\|Ga0164303_10661828	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300012961\|Ga0164302_10590616	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012975\|Ga0134110_10496278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300012986\|Ga0164304_11296456	All Organisms → cellular organisms → Bacteria → Terrabacteria group	593	Open in IMG/M
3300012988\|Ga0164306_10780424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300013308\|Ga0157375_11954309	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300015373\|Ga0132257_100047928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4749	Open in IMG/M
3300015373\|Ga0132257_102621893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300017947\|Ga0187785_10236677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300018032\|Ga0187788_10472379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300018076\|Ga0184609_10227366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300018081\|Ga0184625_10584221	Not Available	550	Open in IMG/M
3300018083\|Ga0184628_10203757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300018422\|Ga0190265_11731609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	734	Open in IMG/M
3300018431\|Ga0066655_10129904	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300018433\|Ga0066667_10503800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	998	Open in IMG/M
3300018482\|Ga0066669_10300452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1303	Open in IMG/M
3300020002\|Ga0193730_1167947	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300020009\|Ga0193740_1058190	Not Available	595	Open in IMG/M
3300022737\|Ga0247747_1035925	Not Available	590	Open in IMG/M
3300022756\|Ga0222622_11148321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300023266\|Ga0247789_1058435	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300024251\|Ga0247679_1015611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1298	Open in IMG/M
3300025910\|Ga0207684_10284791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1425	Open in IMG/M
3300026322\|Ga0209687_1281481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300026523\|Ga0209808_1115810	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300026827\|Ga0207591_102307	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300027483\|Ga0207637_1006861	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027882\|Ga0209590_10913959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300028708\|Ga0307295_10115599	Not Available	730	Open in IMG/M
3300028710\|Ga0307322_10077136	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300028718\|Ga0307307_10225892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300028720\|Ga0307317_10304422	All Organisms → cellular organisms → Bacteria → Terrabacteria group	538	Open in IMG/M
3300028791\|Ga0307290_10099009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1063	Open in IMG/M
3300028799\|Ga0307284_10288228	Not Available	658	Open in IMG/M
3300028810\|Ga0307294_10111745	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300028824\|Ga0307310_10059094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1620	Open in IMG/M
3300028828\|Ga0307312_10954086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300028878\|Ga0307278_10366087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300028885\|Ga0307304_10311685	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300031421\|Ga0308194_10285761	All Organisms → cellular organisms → Bacteria → Terrabacteria group	566	Open in IMG/M
3300031995\|Ga0307409_102866388	Not Available	509	Open in IMG/M
3300032002\|Ga0307416_100180199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1979	Open in IMG/M
3300032126\|Ga0307415_102148115	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546	Open in IMG/M
3300033550\|Ga0247829_10219780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1517	Open in IMG/M
3300034819\|Ga0373958_0094900	All Organisms → cellular organisms → Bacteria → Terrabacteria group	693	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.17%
Host-Associated	Host-Associated	20.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.33%
Plants	Host-Associated → Plants	20.83%
Aquatic	Environmental → Aquatic	5.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.00%
Sediment	Environmental → Aquatic → Sediment	3.33%
Freshwater	Environmental → Aquatic → Freshwater	2.50%
Roots	Host-Associated → Plants → Roots	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.33%
Ice	Environmental → Aquatic → Freshwater → Ice	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.50%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.17%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005507	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020009	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026827	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-11 (SPAdes)	Environmental	Open in IMG/M
3300027483	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1022689073	3300000956	Soil	GMPLDGDPRAAWAVSPSPGEFEFRRCDYDVERAADAYRRMGGDFGEFAARRIERGSD*
JGI10216J12902_1145618501	3300000956	Soil	GDTRSAWAVRYSDGQFEFRRTAYDNQRAAHAYRKLGGDFGEFAARRIERGSD*
F14TB_1015611892	3300001431	Soil	PLDGDVRAAWAVRDDDGELHFRRTEYDVQRAADAYRHMGGGFGEMAANRIERGSD*
A1565W1_106064491	3300001536	Permafrost	RAAWAVRTDSGEFEFRRTEYDVEKAAAGYRSMGGEFGKFAAKRIERGSD*
JGI25407J50210_101126822	3300003373	Tabebuia Heterophylla Rhizosphere	AAWATWDGDFAFHRAEYDFERAAAAYRALGGPFGEMAANRILNGSD*
JGI25407J50210_101581152	3300003373	Tabebuia Heterophylla Rhizosphere	GMPLDGDVRAAWGTWDGDFAFRRTEYDVERAAAAYRSMGGEFGEFAAQRILKGSD*
Ga0062589_1018606272	3300004156	Soil	PLDGDVRAAWATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD*
Ga0063356_1059543691	3300004463	Arabidopsis Thaliana Rhizosphere	DVRAAWATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD*
Ga0062591_1004243373	3300004643	Soil	MPLDGDPRAAWATWDGNFTFRRVDYDTQKAADAFGAMGGEFGEFTSNRILRGSD*
Ga0062594_1025133332	3300005093	Soil	DVRAAWAVRREDGEFEFRRAEYDVERAAAGWRKLGGELGELAARRVVRGRD*
Ga0066673_104412231	3300005175	Soil	RRAAWATWDGDFAFRRTAYDVEPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066679_109268971	3300005176	Soil	AGMPLDGDVRAAWATWDVDFTFRRTEYDVERAAAAWDRVPNGFGPVAAARIRKGSD*
Ga0066684_101425751	3300005179	Soil	GMPLDGDTRAAWATHDDGEFTFRRTEYDTQQAADAYRAMGGDFGEMAGRRIERGSD*
Ga0066388_1018175541	3300005332	Tropical Forest Soil	LDGDRRAAWAVRTDGGEFEFRRTEYEVERAAAGYRSMGGDFGEFVARRIERGSD*
Ga0066388_1045399261	3300005332	Tropical Forest Soil	GSAGMPLDGDRRAAWAMRRDDGEFEFRRTEYDVERAIEAWRRLGPGFPEFAARRLELGRDL*
Ga0070713_1015073071	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GSAGMPLDGDRRAAWATWDGDFTFRRTEYDAEAAAAAYRSMGGDFGEFAARRLERGSD*
Ga0070701_107405672	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	GMPLDGDTRGAWAVRDDEGRFEFRRTEYDNERSAAAYLALGGGFGEMVARRLERGSD*
Ga0070711_1001553173	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LDGDTRSAWATFDGDFTFRRTEYDVERAAEAYRGMGGDFGEFAANRIVRGSD*
Ga0066682_108703612	3300005450	Soil	MPLDGDRRAAWATWDGDFAFRRTAYDLEPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066681_101692753	3300005451	Soil	GDTRAAWATYEGDFTFRRAKYDTQKAADAYRAMGGDFGEMASRRIERGSD*
Ga0066681_104348812	3300005451	Soil	MPLDGDRRAAWATWEDDFTFRRTEYDVEAAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066681_105181521	3300005451	Soil	RRAAWATWDGDFTFRRTAYDIEPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0070663_1014854891	3300005455	Corn Rhizosphere	MPLDGDTRSAWAVRYSDGQFEFRRTSYDNERAAHAYRKLGGEFGEFAARRIERGSD*
Ga0074259_104195983	3300005507	Arabidopsis Rhizosphere	LDGDVRGAWATWDGDFEFRRTEYDVERAAAGYRSLGGDFAEFAASRIERGSD*
Ga0070704_1018587262	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LDGDVRAAWAIRDGDFEFRRTEYDVARAAEGYRSMGGDFGEFAANRIEKGSD*
Ga0066695_102406943	3300005553	Soil	VGMPLDGDRRAAWAVSERPGEFLFERTDYDVERAAEAYRLMGGQFGEFAARRIERGSD*
Ga0066698_101505501	3300005558	Soil	GDRRAAWATRDGDFAFRRVEYDVERAAAAYRAMGGDFGEFAARRIEQGSD*
Ga0066670_108621802	3300005560	Soil	SVGMPLDGDRRAAWATWDGNFTFRRTEYDVEPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0070664_1000367366	3300005564	Corn Rhizosphere	DGDVRGAWATWAGDFEFRRTEYDVAQAAAGYRSLGGDFGEFAARRIERGSD*
Ga0068864_1002181081	3300005618	Switchgrass Rhizosphere	PGSAGMPLDGDTRGAWAVRDDEGRFEFRRTEYDNERSAAAYLALGGGFGEMVARRLERGSD*
Ga0068861_1008256171	3300005719	Switchgrass Rhizosphere	VGMPLDGDSRAAWATFERDFTFRRTEYDTQKAADAYRAMGGGFGDMAAARIERGSD*
Ga0081538_100464974	3300005981	Tabebuia Heterophylla Rhizosphere	GSVGMPLDGDVRAAWGTWDGAFAFRRTEYDVERAAAAYRSMGGEFGEFAAQRILKGSD*
Ga0070717_100520745	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RSAWATFDGHFTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD*
Ga0066651_104265451	3300006031	Soil	MPLDGDPRAAWAVGEGPGEFRFERTDYDVERAAEAYRSLGGGFGDMAARRIERGSD*
Ga0066651_104758642	3300006031	Soil	LDGDRRAAWATWDGDFAFRRTAYDVEAAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066696_104632932	3300006032	Soil	GMPLDGDPRAAWAVSPEPGGFEFRRCEYDVTRAAAGYRSMSGEFGAFAARRIERGSD*
Ga0066652_1014913431	3300006046	Soil	GMPLDGDVRAAWATWAGDFEFRRTEYDVQRAADGYRAMGGDFGEFAATRIERGSD*
Ga0075422_104021132	3300006196	Populus Rhizosphere	GMPLDGDRRAAWAIWDAGFAFRRTAYDVAPAAAAYRKMGGAFGEFAARRIEKGSD*
Ga0074064_115181541	3300006603	Soil	SAGMPLDGDVRAAWATRERDFEFRRTEYDVARAAAGYRSLGGDFGEFAARRIERGSD*
Ga0075434_1013055431	3300006871	Populus Rhizosphere	MPLDGDRRAAWATWDGDFTFRRTEYDAEAAAAAYRSMGGDFGEFAARRLERGSD*
Ga0075434_1013353823	3300006871	Populus Rhizosphere	SAGMPLDGDVRGAWATWDGDFEFRRTEYDVGRAAAGYRSMGGDFGEFAATRIERGSD*
Ga0075424_1000040391	3300006904	Populus Rhizosphere	AGMPLDGDRRAAWATWNGDFTFRRTDYDFEAAAAAYRAMGGEFGEFAARRLEKGSD*
Ga0079219_110502242	3300006954	Agricultural Soil	MATEKTARATWDGDFAFHRTEYDTERAADAFRALGGRFGEMVAKRIERGSD*
Ga0079219_115478122	3300006954	Agricultural Soil	VGMPLDGDVRSAWATWDGDFEHRRTEYDVARAAAGYRSMGGDFSEFAARRIERGSD*
Ga0066710_1021231913	3300009012	Grasslands Soil	DGDVRSAWATWDGDFAFRRTEYDVERAAAAYRAMGGEFGEFAARRIERGSD
Ga0066710_1040125092	3300009012	Grasslands Soil	MPLDVDVRAAWAVWDGSDFAFRRTEYDLDRAAAGWRRLGGDFGNFAAERVERGRD
Ga0099830_116170222	3300009088	Vadose Zone Soil	PLDGDVRAAWAVRGEDGEFEFRRTDYDVERAAAGWRKLGGDFGMFAAQRIERGRD*
Ga0099827_104302513	3300009090	Vadose Zone Soil	PLDGDRRSAWAVWTAAAEFEFRRTEYDVERAAAGYRAMGGDFGEFAARRIERGSD*
Ga0105245_112525871	3300009098	Miscanthus Rhizosphere	LDGDVRAAWATWDGDFELRRTEYEVARAAAGYRSMGGDFGEFAARRIERGSD*
Ga0066709_1030868462	3300009137	Grasslands Soil	GMPLDGDRRAAWAVSPEPDEFEFRRCDYDVERASYGYRRMGGDFGELAARRIERGSD*
Ga0111538_138926822	3300009156	Populus Rhizosphere	GMPLDGDRRAAWATWDGDFTFRRTEYDAEAAAAAYRSMGGDFGEFAARRLERGSD*
Ga0075423_129893481	3300009162	Populus Rhizosphere	VSVETPLDGDSRAAWATFERDFTVRRTEYDTQKAADAYRAMGGGFGDMAAARIERGSD*
Ga0126313_104912481	3300009840	Serpentine Soil	MPLDGDVRAAWATWDGSFAFRRTDYDRERAKDGFAAMGDFGAFVVGRIEKGAD*
Ga0126313_106094341	3300009840	Serpentine Soil	PRAAWATWDGEFDFRRREYDVERAAAAWRALGPGGFGELAANRVLKGSD*
Ga0126315_100518121	3300010038	Serpentine Soil	DGDVRAAWAVRLDGGAFEFRRTEYDTERAAAEWRALASPWSEQAAGRIERGSD*
Ga0134070_101017051	3300010301	Grasslands Soil	GDRRAAWAVSERPGEFRFERTEYDVQRAADAYRSMGGGFGDMAAGRIERGSD*
Ga0134065_103009651	3300010326	Grasslands Soil	AAWATWNGDFTFSRTVYDFEAAAAAYRAMGGDFGEFAARRLEKGSD*
Ga0126372_125525301	3300010360	Tropical Forest Soil	MPLDGDTRAAWATLDDDFVLRRTEYDVQRAADAYRALGGRFGEFMGRRIERGSD*
Ga0126377_119162802	3300010362	Tropical Forest Soil	LDGDRRAAWAVRLDGGEFEFRRSEYDVERALTGWRAVPGSFGEMVQHRLEHGSD*
Ga0126379_112258612	3300010366	Tropical Forest Soil	MPLDGDTRAAWARWDGDFTFRRTAYNAEPAAAAYRSMGGDFGEFAARRIERGSD*
Ga0134125_101016871	3300010371	Terrestrial Soil	SAGMPLDGDRRGAWSTWDGDFTFRRTEYDFEAAAAAYRSMGGDFGEFAARRLERGSD*
Ga0105246_116349891	3300011119	Miscanthus Rhizosphere	GDVRSAWATWDGDFEFRRTEYDVARAAAGYRSMGGDFSEFAARRIERGSD*
Ga0120192_100873401	3300012021	Terrestrial	DVRAAWATRDGDFAFRRTEYDVERAAAAYQSLGDDFGEFAAQRILKGSD*
Ga0136623_101078741	3300012045	Polar Desert Sand	DVRAAWALWDGDFSFRRTEYDVERAAAAYRRVGGDVGESFARRVERGSD*
Ga0136623_103216423	3300012045	Polar Desert Sand	MPLDGDRRAAWCLRTAEGEFEFRRTEYDWERAAAGYRQLGGDFGEFAAGRIERGSD*
Ga0137367_109179762	3300012353	Vadose Zone Soil	MPLDGNVRSAWATWDGDFKFHRTDYDVARAAAGYRSMGGEFGEFAARRIERGSD*
Ga0150984_1158395483	3300012469	Avena Fatua Rhizosphere	MPLDGDRRAAWGTSEQPGELDFHRSEYDVERAAIAYRAMGGDFGEMASRRLERGSD*
Ga0137373_110390771	3300012532	Vadose Zone Soil	MPLDGDVRAAWAVRTNDGEFALRRTEYDVERAVAAWRAMGGDFGDTAARRLERGSD*
Ga0136614_102270842	3300012684	Polar Desert Sand	MPLDGDTRAAWALLRDGEFEFRRVRYDVGRASAAWRRLGTSFGELAARRIERGSD*
Ga0157284_100851491	3300012893	Soil	GDVRAAWASWDGDFELRRTEYDVARAAAGYRSLGGEFGEFAAARIERGSD*
Ga0157301_100648493	3300012911	Soil	DGDTRAAWATWDGDFEFRRTEYDVARAAAGYRSLGGDFGDFAAARIEKGSD*
Ga0164300_103067971	3300012951	Soil	GDVRAAWAPWDGDFQFRRTDYDVARAAAGYRSLGGDFGDFAARRIERGSD*
Ga0164300_104994931	3300012951	Soil	AAWATWDGDFEFRRTEYDVARAAAGYRSMGGEFGEFAATRIERGSD*
Ga0164298_113959452	3300012955	Soil	AGMPLDGDVRGAGATWEGDFEVRRTEYDVARAAAGYRSMGGDFGEFAARRIERGPD*
Ga0164303_106618282	3300012957	Soil	DGDVRAAWATWEGDFELRRTEYDVARVAAGYRSMGGDFGEFAARRIERGSD*
Ga0164302_105906161	3300012961	Soil	GSAGMPLDGDVRGAWATWDGDFEFRRTEYDVARAAAGYRSMGGEFGEFAATRIERGSD*
Ga0134110_104962781	3300012975	Grasslands Soil	LDGDRRAAWATWEGDFAFRRTGYDVEPAATAYREMGGDFGEFAARRIEKGSD*
Ga0164304_112964561	3300012986	Soil	NPGSAGMPLDGDTRSAWAVRYDDGQFEFRRTEYDNQRAADAYRKLGGEFGEFAARRLERGSD*
Ga0164306_107804241	3300012988	Soil	SAGMPLDRDVRAAWATWDGDFEFRRTDYDVARAAAGYRSLGGDFGEFAARRIERGSD*
Ga0157375_119543091	3300013308	Miscanthus Rhizosphere	DGDVRAAWATWDGDFELRRTEYEVARAAAGYRSMGGDFGEFAARRIERGSD*
Ga0132257_1000479281	3300015373	Arabidopsis Rhizosphere	RAAWATWDGDFEFRRTDYDVARAAAGYRSMGGEFGEFAAARIERGSD*
Ga0132257_1026218931	3300015373	Arabidopsis Rhizosphere	AWATWDGNFTFRRVDYDTQKAADAFGAMGGEFGEFTSNRILRGSD*
Ga0187785_102366773	3300017947	Tropical Peatland	MPLDGDRRSAWAVSSEAGEFEFRRTEYDVERAAAGYRALSGSFGTFAARRIERGSD
Ga0187788_104723791	3300018032	Tropical Peatland	SVGMPLDGDRRTAWAVSSEAGEFEFRRTEYDVERAAAGYRALSGSFGTFAARRIERGSD
Ga0184609_102273661	3300018076	Groundwater Sediment	LDGDRRAAWAARLGDGSFEFRRTEYDVERAVAAWRSLPGPFAEMAAKRIERGSD
Ga0184625_105842212	3300018081	Groundwater Sediment	PLDGDVRAAWATWDGDFEFRRTDYDVARAAEGYRSMGGDFGEFAARRIERGSD
Ga0184628_102037571	3300018083	Groundwater Sediment	TQLLNPGSAGMPLDGDRRPGWATRDGDFTFHRTEYDVERAVAGFLGLQSAFGERVARRLKQGSD
Ga0190265_117316091	3300018422	Soil	NPGSIGMPLDGDRRAAWATWEGDFAFRRVEYDVERAAAAFRALDTETGGFFADRILRGSD
Ga0066655_101299041	3300018431	Grasslands Soil	NPGSAGMPLDGDRRAAWATRNEEFTFRRTEYDFERAAAAYRAMGGDFGEFAARRIEKGSD
Ga0066667_105038001	3300018433	Grasslands Soil	GSAGMPLDGDRRAPWATWEDDFTFRRTEYDVEAAAAAYRAMGGDFGEFAARRIEKGSD
Ga0066669_103004523	3300018482	Grasslands Soil	AAWAVSERPGEFWFERTDYDVERAAEAYRLMGGQFGEFAARRIERGSD
Ga0193730_11679472	3300020002	Soil	SVGMPLDGNRGAAWAVRTDGGGFEFRRTEYDVEQAVAGYRSIGGEFGEFAARRIERGSD
Ga0193740_10581901	3300020009	Soil	LDGDVRAAWATWDGDFEFRRTEYDVAKAAAGYRSLGGDFSEFAAKRIEKGSD
Ga0247747_10359252	3300022737	Soil	PLDGDRRVAWATRDGDFTFRRTEYDVERAAAGFRGLGGEFAEFAARRLERGSD
Ga0222622_111483211	3300022756	Groundwater Sediment	SVGMPLDGDRRAAWAGRLGDGSFEFRRTEYDVERAVAAWRSLPGPFAEMAAKRIERGSD
Ga0247789_10584351	3300023266	Soil	LDGDTRAAWATVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD
Ga0247679_10156111	3300024251	Soil	GDTRSAWATFDDHFTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD
Ga0207684_102847913	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LDGDPRAAWAVSPRPGELEFRRCEYDVERAANAYRAMGGDFGEFAARRIERGSD
Ga0209687_12814812	3300026322	Soil	DGDRRAAWATWEGDFAFRRTGYDVEPAATAYREMGGDFGEFAARRIEKGSD
Ga0209808_11158101	3300026523	Soil	TPAAWATHDDGEFTFRRTEYDTQKAADAYRAMGGDFGEMAGRRIERGSD
Ga0207591_1023073	3300026827	Soil	PLDGDTRAAWATVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD
Ga0207637_10068611	3300027483	Soil	GMPLDGDTRAAWATVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD
Ga0209590_109139592	3300027882	Vadose Zone Soil	MPLDGDVRAAWATWDGDFVFRRTEYDVARAAAGYRSLAGEFGEFAARRIERGSD
Ga0307295_101155994	3300028708	Soil	PLDGDRRAAWAVRNDDGEFEFRRTEYDVEKAAAGYRSMGGEFGEFAARRIVRGSD
Ga0307322_100771361	3300028710	Soil	AGMPLDGDVRVAWATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD
Ga0307307_102258921	3300028718	Soil	DGDRRAAWATRNSDFTFRRSEYDVERAAAAYRAMGGDFGEFAAGRIERGSD
Ga0307317_103044222	3300028720	Soil	PLDGDRRAAWAVRTDDGEFQFRRTEYDANSAAEAYRRMGGGFGEMAARRIEKGSD
Ga0307290_100990093	3300028791	Soil	DRRAAWAVRTDDGEFQFRRTEYDADSAAEAYRRMGAGFGEMAARRIEKGSD
Ga0307284_102882282	3300028799	Soil	DGDPRAAWAVSPRAGEFEFRRCDYDVERAANAYRAMGGNFGQMAARRIERGSD
Ga0307294_101117451	3300028810	Soil	DVRAAWATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD
Ga0307310_100590945	3300028824	Soil	RAAWATRNSDFTFRRSEYDVERAAAAYRAMGGDFGEFAAGRIERGSD
Ga0307312_109540861	3300028828	Soil	MPLDGDVRSAWATWDGDFEFHRTEYDVERAAAGYRSMGGEFGEFASRRIERGSD
Ga0307278_103660871	3300028878	Soil	VGMPLDGDRRAAWAVRTDDGEFEFRRTEYDVERAVRAWRELGGDFGGFAAARLERGRD
Ga0307304_103116851	3300028885	Soil	RAAWAVRNDDGEFEFRRTEYDVEEAAAGYRSMGGEFGEFAARRIVRGSD
Ga0308194_102857612	3300031421	Soil	DGDRRAAWAVRTDDGEFQFRRTEYDADSAAAAYRRMGGGFGEMAAKRIEKGSD
Ga0307409_1028663882	3300031995	Rhizosphere	SAGMPLDGDRRAAWALRDDDGEFAFRRTEYDAESAAAAYRRLGGDFGELVSNRIVRGSD
Ga0307416_1001801993	3300032002	Rhizosphere	PLDGDRRAAWALRDDDGEFAFRRTEYDAESAAAAYRRLGGDFGELVSNRIVRGSD
Ga0307415_1021481151	3300032126	Rhizosphere	GDVRAAWAAREDDGRFRFRRTEYDNRRAAEAYRGMGGAFGEMAGGRIERGSD
Ga0247829_102197801	3300033550	Soil	VGMPLDGDVRAAWATWDGDFAFRRTEYDVAKAAAGYRSLGGDFAEFAATRIERGSD
Ga0373958_0094900_38_202	3300034819	Rhizosphere Soil	MPLDGDTRSAWATFDGDFTFRRTEYDVERAAEAYRGMGGDFGEFAANRIVRGSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073729

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences