Metagenome / Metatranscriptome Family F073703

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073703
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	105 residues
Representative Sequence	VQIAENWSRIRGRVEAWQPPRKAGDPGTLTIVVERVDDVASPDGSRHRNLLADATGTTVHVMVPASAATRVQPRKGSTAVVDVRRGKSPDQVFAHPEHITLTSE
Number of Associated Samples	95
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	61.67 %
% of genes near scaffold ends (potentially truncated)	30.83 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.167 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (38.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.30% β-sheet: 37.12% Coil/Unstructured: 57.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
b.40.4.0: Nucleic acid-binding proteins	d2vw9a_	2vw9	0.69
b.40.4.0: Nucleic acid-binding proteins	d2vw9a_	2vw9	0.69
b.40.3.3: TIMP-like	d2a73b8	2a73	0.68
b.40.4.0: Nucleic acid-binding proteins	d2fxqa_	2fxq	0.68
b.40.4.0: Nucleic acid-binding proteins	d4dama1	4dam	0.68
b.40.4.3: Nucleic acid-binding proteins	d5yuoa_	5yuo	0.68
b.40.3.3: TIMP-like	d2a73b8	2a73	0.68
b.40.4.0: Nucleic acid-binding proteins	d2fxqa_	2fxq	0.68
b.40.4.0: Nucleic acid-binding proteins	d4dama1	4dam	0.68
b.40.4.3: Nucleic acid-binding proteins	d5yuoa_	5yuo	0.68

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF12796	Ank_2	21.67
PF10415	FumaraseC_C	10.00
PF05547	Peptidase_M6	9.17
PF13857	Ank_5	6.67
PF05199	GMC_oxred_C	2.50
PF13637	Ank_4	1.67
PF02806	Alpha-amylase_C	1.67
PF00656	Peptidase_C14	1.67
PF13676	TIR_2	0.83
PF00432	Prenyltrans	0.83
PF03098	An_peroxidase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG4412	Bacillopeptidase F, M6 metalloprotease family	Posttranslational modification, protein turnover, chaperones [O]	9.17
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	2.50
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	1.67
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	1.67
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	1.67
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	1.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
All Organisms	root	All Organisms	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
cellular organisms	root	All Organisms → cellular organisms	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.67 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.67 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.33 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.00 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.17 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.50 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.17 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	2.50 %
Oomycota	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota	0.83 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.83 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.33 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	2.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.83 %
Peronosporales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales	0.83 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	3.33 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
Alcanivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax	2.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	0.83 %
Peronosporaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae	0.83 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	3.33 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
unclassified Alcanivorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax	2.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	0.83 %
unclassified Nitrosomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas	0.83 %
Phytophthora	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	3.33 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3.33 %
Alcanivorax sp. S6407	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. S6407	2.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.50 %
Nitrosomonas sp. Nm34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Nm34	0.83 %
Parcubacteria bacterium SG8_24	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Parcubacteria bacterium SG8_24	0.83 %
Phytophthora pseudosyringae	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora pseudosyringae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig00385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4195	Open in IMG/M
2170459009\|GA8DASG01ECTH7	Not Available	515	Open in IMG/M
3300000956\|JGI10216J12902_102711115	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	2199	Open in IMG/M
3300002568\|C688J35102_120923104	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2384	Open in IMG/M
3300004114\|Ga0062593_100146251	Not Available	1782	Open in IMG/M
3300004156\|Ga0062589_100340183	Not Available	1184	Open in IMG/M
3300004156\|Ga0062589_100395072	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300004157\|Ga0062590_100548844	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300004463\|Ga0063356_100448391	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300004463\|Ga0063356_102389312	Not Available	808	Open in IMG/M
3300004479\|Ga0062595_100803062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	775	Open in IMG/M
3300004480\|Ga0062592_100805724	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300005093\|Ga0062594_101894680	Not Available	632	Open in IMG/M
3300005168\|Ga0066809_10120305	Not Available	659	Open in IMG/M
3300005329\|Ga0070683_100589788	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300005335\|Ga0070666_10080806	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300005338\|Ga0068868_100019475	All Organisms → cellular organisms → Bacteria	5085	Open in IMG/M
3300005341\|Ga0070691_10385279	Not Available	786	Open in IMG/M
3300005354\|Ga0070675_101519257	All Organisms → cellular organisms → Eukaryota → Opisthokonta	618	Open in IMG/M
3300005356\|Ga0070674_100503337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. S6407	1009	Open in IMG/M
3300005356\|Ga0070674_102167430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	507	Open in IMG/M
3300005438\|Ga0070701_10227443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. S6407	1115	Open in IMG/M
3300005441\|Ga0070700_100177909	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300005456\|Ga0070678_101427207	Not Available	647	Open in IMG/M
3300005459\|Ga0068867_100791117	All Organisms → cellular organisms → Eukaryota → Opisthokonta	845	Open in IMG/M
3300005467\|Ga0070706_100403746	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300005618\|Ga0068864_100992737	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300005764\|Ga0066903_102357782	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1029	Open in IMG/M
3300005764\|Ga0066903_105773680	Not Available	650	Open in IMG/M
3300005841\|Ga0068863_100387558	Not Available	1365	Open in IMG/M
3300005844\|Ga0068862_100238941	Not Available	1651	Open in IMG/M
3300006237\|Ga0097621_100192090	All Organisms → cellular organisms → Bacteria → Proteobacteria	1769	Open in IMG/M
3300006358\|Ga0068871_100418769	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300006358\|Ga0068871_100566045	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300006606\|Ga0074062_11370124	Not Available	838	Open in IMG/M
3300009094\|Ga0111539_10776952	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300009094\|Ga0111539_11777882	Not Available	715	Open in IMG/M
3300009100\|Ga0075418_10942939	Not Available	933	Open in IMG/M
3300009100\|Ga0075418_11488028	Not Available	735	Open in IMG/M
3300009147\|Ga0114129_10150809	All Organisms → cellular organisms → Bacteria	3182	Open in IMG/M
3300009156\|Ga0111538_11142827	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300009156\|Ga0111538_12831443	Not Available	607	Open in IMG/M
3300009162\|Ga0075423_10400454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp. Nm34	1440	Open in IMG/M
3300009551\|Ga0105238_11547684	Not Available	692	Open in IMG/M
3300010403\|Ga0134123_10668155	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora pseudosyringae	1010	Open in IMG/M
3300010403\|Ga0134123_12603796	Not Available	573	Open in IMG/M
3300011423\|Ga0137436_1012584	All Organisms → cellular organisms → Bacteria	2080	Open in IMG/M
3300011441\|Ga0137452_1111932	Not Available	905	Open in IMG/M
3300011443\|Ga0137457_1261255	Not Available	592	Open in IMG/M
3300012146\|Ga0137322_1006266	Not Available	1445	Open in IMG/M
3300012146\|Ga0137322_1072642	Not Available	532	Open in IMG/M
3300012212\|Ga0150985_121371192	Not Available	579	Open in IMG/M
3300012225\|Ga0137434_1024287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300012684\|Ga0136614_11186087	Not Available	517	Open in IMG/M
3300012984\|Ga0164309_10027397	All Organisms → cellular organisms → Bacteria	3082	Open in IMG/M
3300012985\|Ga0164308_12063581	Not Available	531	Open in IMG/M
3300012987\|Ga0164307_10642958	Not Available	823	Open in IMG/M
3300012987\|Ga0164307_10738948	Not Available	775	Open in IMG/M
3300013296\|Ga0157374_10185596	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2033	Open in IMG/M
3300014325\|Ga0163163_10724584	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300014325\|Ga0163163_11610183	Not Available	710	Open in IMG/M
3300014326\|Ga0157380_10285113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Parcubacteria bacterium SG8_24	1513	Open in IMG/M
3300014326\|Ga0157380_10635767	Not Available	1062	Open in IMG/M
3300014326\|Ga0157380_10654264	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300014326\|Ga0157380_10906186	Not Available	908	Open in IMG/M
3300015371\|Ga0132258_10054711	All Organisms → cellular organisms → Bacteria	9155	Open in IMG/M
3300015371\|Ga0132258_10779281	All Organisms → cellular organisms → Bacteria	2410	Open in IMG/M
3300015371\|Ga0132258_10836221	All Organisms → cellular organisms → Bacteria → Proteobacteria	2322	Open in IMG/M
3300015371\|Ga0132258_10845380	Not Available	2309	Open in IMG/M
3300015373\|Ga0132257_100435646	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300015374\|Ga0132255_102142012	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300017787\|Ga0183260_10107876	Not Available	2010	Open in IMG/M
3300018027\|Ga0184605_10371821	Not Available	644	Open in IMG/M
3300018031\|Ga0184634_10217652	Not Available	872	Open in IMG/M
3300018063\|Ga0184637_10121276	Not Available	1612	Open in IMG/M
3300018077\|Ga0184633_10214893	Not Available	992	Open in IMG/M
3300018079\|Ga0184627_10083602	Not Available	1677	Open in IMG/M
3300018082\|Ga0184639_10229301	Not Available	983	Open in IMG/M
3300018432\|Ga0190275_13301226	Not Available	522	Open in IMG/M
3300018469\|Ga0190270_10190705	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300018469\|Ga0190270_10589711	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300018476\|Ga0190274_10053132	All Organisms → cellular organisms → Bacteria	2944	Open in IMG/M
3300018481\|Ga0190271_10293066	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300019362\|Ga0173479_10416123	Not Available	653	Open in IMG/M
3300020034\|Ga0193753_10263440	Not Available	759	Open in IMG/M
3300021051\|Ga0206224_1012245	Not Available	960	Open in IMG/M
3300025903\|Ga0207680_10263505	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	1193	Open in IMG/M
3300025905\|Ga0207685_10805492	Not Available	518	Open in IMG/M
3300025911\|Ga0207654_10383988	Not Available	973	Open in IMG/M
3300025930\|Ga0207701_10021106	All Organisms → cellular organisms → Bacteria	6238	Open in IMG/M
3300025937\|Ga0207669_10408538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. S6407	1065	Open in IMG/M
3300025937\|Ga0207669_11556024	Not Available	564	Open in IMG/M
3300026023\|Ga0207677_10035994	All Organisms → cellular organisms → Bacteria → Acidobacteria	3221	Open in IMG/M
3300026023\|Ga0207677_10554119	Not Available	1002	Open in IMG/M
3300026088\|Ga0207641_10240456	Not Available	1687	Open in IMG/M
3300026089\|Ga0207648_10171798	All Organisms → cellular organisms → Bacteria	1916	Open in IMG/M
3300026095\|Ga0207676_10528854	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300026121\|Ga0207683_10157406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2052	Open in IMG/M
3300026121\|Ga0207683_11307708	Not Available	671	Open in IMG/M
3300026142\|Ga0207698_11530740	Not Available	682	Open in IMG/M
3300028380\|Ga0268265_11125711	Not Available	780	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10227931	Not Available	525	Open in IMG/M
3300031547\|Ga0310887_11131742	Not Available	503	Open in IMG/M
3300031740\|Ga0307468_100261878	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	1225	Open in IMG/M
3300031740\|Ga0307468_101035478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	725	Open in IMG/M
3300031847\|Ga0310907_10749087	Not Available	543	Open in IMG/M
3300031854\|Ga0310904_11151695	Not Available	557	Open in IMG/M
3300031858\|Ga0310892_10647437	Not Available	720	Open in IMG/M
3300031943\|Ga0310885_10444175	Not Available	698	Open in IMG/M
3300032012\|Ga0310902_11063457	Not Available	564	Open in IMG/M
3300032013\|Ga0310906_11444664	Not Available	505	Open in IMG/M
3300032013\|Ga0310906_11451761	Not Available	504	Open in IMG/M
3300032075\|Ga0310890_11050206	Not Available	657	Open in IMG/M
3300032075\|Ga0310890_11215286	Not Available	614	Open in IMG/M
3300032174\|Ga0307470_10433841	Not Available	940	Open in IMG/M
3300032180\|Ga0307471_101070449	Not Available	973	Open in IMG/M
3300032211\|Ga0310896_10054792	Not Available	1626	Open in IMG/M
3300033412\|Ga0310810_10818022	Not Available	837	Open in IMG/M
3300034147\|Ga0364925_0300721	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300034149\|Ga0364929_0067209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	1103	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.67%
Host-Associated	Host-Associated	42.50%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.00%
Plants	Host-Associated → Plants	42.50%
Aquatic	Environmental → Aquatic	11.67%
Modeled	Engineered → Modeled	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.33%
Sediment	Environmental → Aquatic → Sediment	10.00%
Roots	Host-Associated → Plants → Roots	4.17%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Floodplain	Environmental → Terrestrial → Floodplain	1.67%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.83%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.00%
Loam	Environmental → Terrestrial → Soil → Loam	7.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.17%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.50%
Ice	Environmental → Aquatic → Freshwater → Ice	1.67%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.67%
Sand	Environmental → Terrestrial → Soil → Sand	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.83%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.00%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.67%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.83%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.50%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.83%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0385.00000060	2166559005	Simulated	VQIAENWSRIRGRIEAWQPPRHDGEPGTLTIAVAGVEDVISRDGARHRNLLADAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHPDHITVTP
F47_12554990	2170459009	Grass Soil	RGRIEAWQPPRHEGEPGTLTIAVAGVEDVVSRGGARHRNLLSDAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHPDHITVTP
JGI10216J12902_1027111153	3300000956	Soil	VSRAVSVQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVDDVVAEDGSRHRNLLTGTSGTTLQVKVPASVAADITPRKGSTAVVDVRRGRSPHSVFAHPDRITLKP*
C688J35102_1209231042	3300002568	Soil	VQIVENWSRIRGRVVAWQPPRKAGESGTLTIAVDDVESVASRDGSAHRNLLADAAGRTVHVTVPASAAGHVKARPGATAVVEVRRGPSKDRLFAHPERIAVKP*
Ga0062593_1001462511	3300004114	Soil	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVASSDGSPHHNLLAGAAGTTIHVIVPASAATRVVPPKGSMAVVEVRRGGSPGRVFANPDRITLKPG*
Ga0062589_1003401832	3300004156	Soil	VPDVGLAGERASAAPERKRQIVQIVENWARLRGRVEAWHPPEKSGDPGTLTLAVDCVEDVASRDGSHHPNLLAGTAGTTVEVIVPASAAKQVMPARGATATVEVRRGSSPHRVFAHPDRMSFTS*
Ga0062589_1003950722	3300004156	Soil	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK*
Ga0062590_1005488442	3300004157	Soil	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVASSDGSPHHNLLAGAAGTTIHVIVPASAATRVVPPKGSMAVVEVRRGGSPGRVFANPDRITLRPG*
Ga0063356_1004483912	3300004463	Arabidopsis Thaliana Rhizosphere	VNDTVQIVENWSRILGRVESWEPPRKSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPG*
Ga0063356_1023893121	3300004463	Arabidopsis Thaliana Rhizosphere	MARQAVASRHQGEVDDRVQIVENWSRIHGRVEAWQPPRKAGESGTLTLTVERVDDVASPDGSRHRNLMADATGTTVQVMIPASAATSVQPRKGSIAVIDVRRGRSRDRVFAHPGYISLRHE*
Ga0062595_1008030621	3300004479	Soil	VQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVALPDGSRHRNLLAGTAGTTIHVIVPASAAARVEPPKGSTAVVEVRRTGSPGQLFANPDRMTLTPR*
Ga0062592_1008057242	3300004480	Soil	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK*
Ga0062594_1018946801	3300005093	Soil	MPIVENWSRLRGRVQAWDPPKKAGDPGTLTLVVDRVDDVAAEDGTRHRNMLSRSAGTTVRVTVPASAAAQIKPRKGSKAVVDVRRGRVPDRLFAHPEHIKLTSK*
Ga0066809_101203052	3300005168	Soil	VQIAENWSRIRGRIEAWQPPRSEGEPGTLTIAVAGVEDVVSRDGARHRNLLSDAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHP
Ga0070683_1005897882	3300005329	Corn Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAASKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP*
Ga0070666_100808062	3300005335	Switchgrass Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHISVTP*
Ga0068868_1000194754	3300005338	Miscanthus Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP*
Ga0070691_103852791	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVASSDGSPHHNLLAGAAGTTIHVIVPASAATRVVPPKGSMAVVEVRR
Ga0070675_1015192572	3300005354	Miscanthus Rhizosphere	WSRLRGRVAAWDPPKKAGDPGTLTIVVERVEDVVAPDGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK*
Ga0070674_1005033372	3300005356	Miscanthus Rhizosphere	RRRRQARRDGARLGRGLSELSERMPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK*
Ga0070674_1021674301	3300005356	Miscanthus Rhizosphere	GVNDTVQIVENWSRILGRVENWEPPRTSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPG*
Ga0070701_102274431	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	DPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK*
Ga0070700_1001779092	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAPDGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK*
Ga0070678_1014272072	3300005456	Miscanthus Rhizosphere	VTAWDPPKKAGDPGTLTIVVDRVEDVVAPDGSRHRNMLSRTAGTTVRVTVPASAAAQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK*
Ga0068867_1007911172	3300005459	Miscanthus Rhizosphere	MPIAENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK*
Ga0070706_1004037462	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARFEPPKGSTAVVEVRRAGSPGRVFANPDRITLTPRS*
Ga0068864_1009927372	3300005618	Switchgrass Rhizosphere	VQIAENWSRIRGRVEAWHAPRKTGESGTLTMIVDGVEDVASRDGTRHRNLMADAAGKTVHVIVPASAATHIQAKKGAIAVVEVRRGQSPERVFAHPERITLTP*
Ga0066903_1023577822	3300005764	Tropical Forest Soil	VQIAENWSRIRGRVTAWKPPRRKGDTGTLTIAVSGVDDVVSHDGTRHRNMLADTAGKTMRVIVPASAATHIQARKGSTAVVDVRRGGSPDRVFAHPDHITVTP*
Ga0066903_1057736801	3300005764	Tropical Forest Soil	VQIAENWSRIRGRVTAWQPPRKKGEAGTLTIAVSGVEDVVSHDGSRHRNMLPDAAGKIMRVVVPASAAARIQARKGSTAIVEVRRGESPDRVFAHPEHITVTSSPFPFSCSSSC
Ga0068863_1003875582	3300005841	Switchgrass Rhizosphere	IRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP*
Ga0068862_1002389412	3300005844	Switchgrass Rhizosphere	VGPVQIVENWSRIHGRVESWQPPRKAGEPGTLTIVVDGVDDVASPDGSRHRNLMTDAKGTTVHVMVPASAATHFQPRTGSTATVDVRRGRSPDHVFAHPKHITLTNE*
Ga0097621_1001920902	3300006237	Miscanthus Rhizosphere	MQIAENWSKLRGKVQKWEPPKKPGDPGTLTIVVDRVDDVAAADGSRHRNMLSDTAGKTVRVTVPASAATKIQAKKGATAVVNVRRAKVPDQYFAHPEHIKLTSK*
Ga0068871_1004187692	3300006358	Miscanthus Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEAGTLTIAVSRVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP*
Ga0068871_1005660452	3300006358	Miscanthus Rhizosphere	MQIAENWSKLRGKVQKWEPPKKPGDPGILTIVVDRVDDVAAADGSRHRNMLSDTAGKTVRVTVPASAATKIQAKKGATAVVNVRRAKVPDQYFAHPEHIKLTSK*
Ga0074062_113701241	3300006606	Soil	VQIAENWSRIRGRIEAWQPPRSEGEPGTLTIAVAGVEDVVSRDGARHRNLLSDAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHPDRITVTP*
Ga0111539_107769522	3300009094	Populus Rhizosphere	MPIVENWSRLRGRVEGWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTTVRVTVPASAAAQIQPRKGSTAVVDVRRGKVPDRYFAHPEHIRLTSK*
Ga0111539_117778822	3300009094	Populus Rhizosphere	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVDDVVAEDGSRHRNLLAGTSGTTLQVNVPASVAADIAPRKGSTAVVDVRRGRSPHSVFAHPDRITLKP*
Ga0075418_109429392	3300009100	Populus Rhizosphere	VQIAENWSRIHGRVEAWQPPRRDGEPGTLTIAVDRVEAVVSRDGSPHRNLLADAEGRTVQVVVPSSAAQHVDPTKGSTAVVEVRRGPSSQRVFAHPERITLTP*
Ga0075418_114880282	3300009100	Populus Rhizosphere	MPIVENWSRLRGRVQAWDPPKKAGDPGTLTLVVDRVDDVAAEDGTGHRNMLSRSAGTTVRVTVPASAAAQIKPRKGSKAVVDVRRGRVPDRLFAHPEHIKLTSK*
Ga0114129_101508092	3300009147	Populus Rhizosphere	VQIAENWSRIHGRVEAWQPPRRDGEPGTLTIAVDRVEAVVSRDGSPHRNLLADVEGKTVQVVVPSSAAQHVDPTKGSTAVVEVRRGPSSQRVFAHPERITLTP*
Ga0111538_111428272	3300009156	Populus Rhizosphere	VQIAENWSRIRGRIEAWQPPRSEGEAGTLTIVVADVEDVVSRDGARHRNLLADAAGTTMRVIVPADAAKHVNAATGATAVLDVRRGHSSDRVFAHPDRIRVTP*
Ga0111538_128314432	3300009156	Populus Rhizosphere	VNDTVQIVENWSRILGRVENWEPPRKSGEPGTLTIAVERVEDVASADGSRHRNLLAGAAGTTIHVIVPARAAARVVPPKGSMAVVEVRRGGSPGRVFANPDRITLKPG*
Ga0075423_104004542	3300009162	Populus Rhizosphere	VQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVAPPKGSTAVVEVRRAGSPGRVFANPDRITLTPR*
Ga0105238_115476842	3300009551	Corn Rhizosphere	RGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP*
Ga0134123_106681552	3300010403	Terrestrial Soil	MPIAENWSRLRGRVTAWDPPKKAGDPGTLTIVVDRVEDVVAPDGSRHRNMLSRTAGTTVRVTVPASAAAQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK*
Ga0134123_126037961	3300010403	Terrestrial Soil	VQIAENWSRIHGRVEAWQPPRKAGDPGTLTLVVERVDDVTSADGSRHRNLMSDAAGRTVQVMVPASAASGVRPRKGSIAVVDVRRGNVPDRVFAHPE
Ga0137436_10125842	3300011423	Soil	LPLDAGRGADSPRLPAHRRGERQVQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRTGSPGQLFANPDRMTLTPR*
Ga0137452_11119322	3300011441	Soil	MAKRPLLRWRQGEVDDRVQTVENWSRIHGRVEAWQPPRKAGEPGMLTLVVERVENVASPDGSCHRNLMADARGTTVQVTVPSRAATSVKPRRGSTAVIDVRRGRSPDRVFAHPEHITLTHE*
Ga0137457_12612552	3300011443	Soil	RAGANAFFISTYRCVSVFRGGEKRNMGDVQIVENWSRIHGRVEAWQPPRKAGDPGMLTLVVNRVDDVASPDGSRHRNLMADATGTTVQVMVPARAATRVRPRKGSTAVVDVRRGKSPDHVFADPDHISLTHD*
Ga0137322_10062662	3300012146	Soil	MGDVQIVENWSRIHGRVEAWQPPRRAGDPGTLTLVVDRVDDVASPDGSRHRNLMADATGTTVQVMVPASAASRVRPRKGSTAVIDVRRGKSPDRLFADPDHISLTHE*
Ga0137322_10726421	3300012146	Soil	VGDRVQIVENWSRIHGRVEAWQPPRRAGDPGTLTLVVDRVDDVASPDGSRHRNLMSDAAGTTVQVMVPARAASRVRPRRGSTAVIDVRRGKSPDRVFADPDHISLTHE*
Ga0150985_1213711921	3300012212	Avena Fatua Rhizosphere	DDERPGRAARRRTRRGEETRSGREARAAVQIAENWSRIRGRVTAWQRPRNKGEAGTLTIAVSGVEDVVSQDGSRHRNMLAGSAGKTMRVIVPASAAAHLEARKGSTAVVDVRRGQSPDRVFAHPDRITVTP*
Ga0137434_10242871	3300012225	Soil	MAKRALARRHQGEVDDGVQIVENWSRIHGRVEAWQPPRRPGEPGTLTLVVERVDDVASADGSHCRNLMADATGTTLQVMIPAGAATGVQPRKGSTAVIDVRRGSSLGRVFAHPDHISLTPE*
Ga0136614_111860872	3300012684	Polar Desert Sand	EPVQIAENWSRICGRVEGWQPPRKAGDHGTLRVAVDRVEDVVSPDGSRHRNLLAAAAGRTVDIVVPASAAQGLQPRAGETAIIDVRSGGAPGRVFAHPGRITLTP*
Ga0164309_100273974	3300012984	Soil	MQIAENWSKLRGKVQAWDPPKKPGDPGTLTIMVDRVDDVTAADGSRHRNMLSDTAGKTVRVTVPASAATQIQAKKGATAVVNVRRAKVPDQYFAHPEHIKLRSK*
Ga0164308_120635812	3300012985	Soil	MQIAENWSKLRGKVQKWEPPKKPGDPGTLTIVVDRVDFVAAADGSRHRNMLSDTAGKTVRVTVPASAATKIQAKKGATAVVNVRRAQVPDQYFAHPEHIKLTSK*
Ga0164307_106429582	3300012987	Soil	MTIAENWSRLRGKVEAWEPPDKAGDPGTLTIVVDRVDDVAASDGSRHRNMLAGSAGKTVHVTVPASAARDLRPQKGSTAILKVRRGRAPDRFFAHPEDIEVAPE*
Ga0164307_107389482	3300012987	Soil	MQIAENWSKLRGKVQAWDPPKKPGDPGTLTIVVDRVDDVTAADGSRHRNMLSDTAGKTVRVTVPASAATQLQAKKGATAVVNVRRAQVPDQYFAHPEHIKLTSK*
Ga0157374_101855962	3300013296	Miscanthus Rhizosphere	MQIAENWSKLRGKVQAWDPPKKPGDPGTLTIVVDRVDDVTAADGSRHRNMLSDTAGKTVRVTVPASAATQIQAKKGATAVVNVRRAQVPDQYFAHPEHIKLTSK*
Ga0163163_107245842	3300014325	Switchgrass Rhizosphere	VQIAENWSRIRGRVEAWQAPRKTGESGTLTMIVDGVEDVASRDGTRHRNLMADAAGKTVHVIVPASAATHIQAKKGAIAVVEVRRGQSPERVFAHPERITLTP*
Ga0163163_116101832	3300014325	Switchgrass Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKS
Ga0157380_102851132	3300014326	Switchgrass Rhizosphere	MAKRALPRWRQGEADSRVQGHENWSRIHGRVEAWQPPRTAGEPGMLTLVVERVENVASPDGSCHRNLMADATGTIIQVTVPARAASSVKPRKGSIAVIDVRRGRAPDRVFAHPDHISLTHE*
Ga0157380_106357672	3300014326	Switchgrass Rhizosphere	VGPVQIVENWSRIHGRVESWQPPRKAGEPGTLTIVVDGVDDVASPDGSRHRNLMTDAKGTTVHVMVPASAATRFQPRKGSTATVDVRRGRSPDHVFAHPKHITLTNE*
Ga0157380_106542642	3300014326	Switchgrass Rhizosphere	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVDDVVAEDGSRHRNLLAGTSGTTLQVKVPASVAADIAPRKGSTAVVDVRRGRSPHSVFAHPDRITLKP*
Ga0157380_109061862	3300014326	Switchgrass Rhizosphere	VNDTVQIVENWSRILGRVENWEPPRTSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPG*
Ga0132258_100547114	3300015371	Arabidopsis Rhizosphere	VNDTVQIVENWSRILGRVENWEPPRKSGEPGTLTIAVERVEDVASADGSRHRNLLAGAAGTTIRVIVPARAAARVVPPKGSMAVVEVRRGGSPGRVFANPDRITLKPG*
Ga0132258_107792812	3300015371	Arabidopsis Rhizosphere	MQIAENWSRLRGRVESWDPPRKAGDPGTLTIVVDHVDDVAAPDGTRQRNMLPDTAGKTVRVTVPASAAAKIKAKKGAKAVVNVRRAKTPDRYFAHPEHIKLTSK*
Ga0132258_108362212	3300015371	Arabidopsis Rhizosphere	VQIAENWSRIHGRVAAWQPPRKAGDPGTLTLVVERVDDVTSADGSRHRNLMSDAAGRTVEVMIPASAASGVRPRKGSIAVVDVRRGNAPDRVFAHPEHIKLAHE*
Ga0132258_108453802	3300015371	Arabidopsis Rhizosphere	MQIVENWSQLRGKVQAWDPPKKAGDPGTLTIVVDRVDDVTAADGSRHRNMLSDTAGKTVRVTVPASAATQIQAKKGATAVVKVRRARVPDRYFAHPEHIKVTSK*
Ga0132257_1004356462	3300015373	Arabidopsis Rhizosphere	MQIAENWSRLRGRVESWDPPRKAGDPGTLTIVVDHVDDVAAPDGTRHRNMLPDAAGKTVRVSVPASAAAKIKAKKGAKAVVNVRRAKTPDRYFAHPEHIKLTSK*
Ga0132255_1021420122	3300015374	Arabidopsis Rhizosphere	MQIAENWSRLRGRVESWDPPRKAGDPGTLTIVVDHVDDVAAPDGTRQRNMLPDTAGKTVRVTVPASAAAKIKAKKGAKAVVNVRRAKTPD
Ga0183260_101078762	3300017787	Polar Desert Sand	VQIAENWSRICGRVEAWQPPRKAGDHGTLTIAVDRVEDVVSPDGSRHRNLLAAAAGSTVEVIVPASAAEGLEPQAGETAIIDVRSGRAPGRVFAHPARITLAP
Ga0184605_103718211	3300018027	Groundwater Sediment	VQIAENWSRIRGRVEAWQPPRKAGDPGTLTIVVERVDDVASPDGSRHRNLLADATGTTVHVMVPASAATRVQPRKGSTAVVDVRRGKSPDQVFAHPEHITLTSE
Ga0184634_102176522	3300018031	Groundwater Sediment	VQIVENWSRIRGRVEAWQPPRKAGDPGTLTIVVERVDDVASPDGSRHRNLLADAAGTTVHVMVPASALTRVEPRKGSTAVVDVRRGKSPGHVFAHPEHITLTSE
Ga0184637_101212762	3300018063	Groundwater Sediment	MGDVQIAENWSRIHGRVEAWQAPRKAGDPGMLTLVVNRVDDVASPDGSRHRNLMADATGTTVQVMVPARAATRVRPRKGSTAVVDVRRGKSPDHVFADPDHISLTHD
Ga0184633_102148932	3300018077	Groundwater Sediment	VQIAENWSRIRGRVEAWQPPRKAGDPGTLTIVVERVDDVVSPDGSRHRNLLADAAGTTVHVTVPASALTRVQPRKGSSAVVNVRR
Ga0184627_100836021	3300018079	Groundwater Sediment	VQIAENWSRIHGRVEAWQAPRKAGDPGMLTLVVNRVDDVASPDGSRHRNLMADATGTTVQVMVPARAATRVRPRKGSTAVVDVRRGKSPDHVFADPDHISLTHD
Ga0184639_102293012	3300018082	Groundwater Sediment	VQIAENWSRIRGRVEAWQPPRKAGDPGTLTIVVERVDDVVSPDGSRHRNLLADAAGTTVHVMVPASALTRVEPRKGSTAVVDVRRGKSPGHVFAHPEHITLTSE
Ga0190275_133012261	3300018432	Soil	AGASVRAPPRGDRMQIAENWSRIRGRVEAWQPPRKAGDAGRLTIAVEHVDDVASPDGSRHRNLMADATGTTVQVMVPANAAKGFQPRTGSTAVVDVRRGRALGQVFAHPEHITLTSE
Ga0190270_101907052	3300018469	Soil	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPR
Ga0190270_105897112	3300018469	Soil	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRAAGTTVRVTVPASAATQIKPRKGSTAVVDVRRGRVPDRFFAHPEHIRLTSK
Ga0190274_100531323	3300018476	Soil	LPPAVGRGGSARPLGGIAGVNDTVQIVENWSRILGRVENWEPPRTSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPG
Ga0190271_102930662	3300018481	Soil	MPIAENWSQLRGKVASWEPPQKAGDPGTLTIVIDRVDDVVAPGGTRHRNMLSGSAGKTVRVTVPADTATQFFPQKGSTAVVKVRRGRAPDSLFAHPESILVTSD
Ga0173479_104161232	3300019362	Soil	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIVVERVEDVVAPDGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK
Ga0193753_102634402	3300020034	Soil	VQIAENWSRIRGRVEAWQPPREAGDSGTLTIAVDGVEDVVSHDGSRHRNLFADAKGTTVHVIVPASAAQHVEAEKGSTAVIEVRRGQSPERVFAHPERITLTP
Ga0206224_10122451	3300021051	Deep Subsurface Sediment	EAGEEIGRDSTSGAPTLARRRIAEGVDRVQIAENWSRIRGRVEAWQPPRKPGDPGTLTIVVERVEDLSSPDGSRHRNLLADAAGTTVQVMVPASALTRVQPRKGSSAVVDVRRGKSPGRVFAHPGHITLTSE
Ga0207680_102635052	3300025903	Switchgrass Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVT
Ga0207685_108054921	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	ARRSHEPRAGARSSGREARAAVQIAENWSRIRGRIEAWEPPRNEGEPGTLTIAVAGVEDVVSRDGARHRNLLSDAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHPDRITVTP
Ga0207654_103839882	3300025911	Corn Rhizosphere	VTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP
Ga0207701_100211065	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPEHIRLTSK
Ga0207669_104085382	3300025937	Miscanthus Rhizosphere	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK
Ga0207669_115560241	3300025937	Miscanthus Rhizosphere	LAVGRGGSARPLGGIAGVNDTVQIVENWSRILGRVENWEPPRTSGGPGTLTIAVERVEDVRSSDGSHHHNLLAGAAGTTIHVIVPASAATRVEPPKGSMAVVEVRRGGSPERVFANPNRITLMPG
Ga0207677_100359944	3300026023	Miscanthus Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVLASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP
Ga0207677_105541192	3300026023	Miscanthus Rhizosphere	MQIAENWSKLRGKVQKWEPPKKPGDPGTLTIVVDRVDDVAAADGSRHRNMLSDTAGKTVRVTVPASAATQIQAKKGATAVVNVRRAQVPDQYFAHPEHIKLTSK
Ga0207641_102404562	3300026088	Switchgrass Rhizosphere	VQIAENWSRIRRRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHITVTP
Ga0207648_101717981	3300026089	Miscanthus Rhizosphere	PLFRFTQQGLPGIAIHNHGRRKQAGGARLMPIAENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHIRLTSK
Ga0207676_105288542	3300026095	Switchgrass Rhizosphere	VQIAENWSRIRGRVEAWHAPRKTGESGTLTMIVDGVEDVASRDGTRHRNLMADAAGKTVHVIVPASAATHIQAKKGAIAVVEVRRGQSPERVFAHPERITLTP
Ga0207683_101574062	3300026121	Miscanthus Rhizosphere	MPIAENWSRLRGRVAAWDPPKKAGDPGTLTIVVERVEDVVAPDGSRHRNMLSRTAGTTVRVTVPASAAAQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK
Ga0207683_113077081	3300026121	Miscanthus Rhizosphere	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVVDVRRGRVPDRYFAHPEHIRLTSK
Ga0207698_115307401	3300026142	Corn Rhizosphere	VQIAENWSRIRGRVTAWQPPRKKGEPGTLTIAVSGVEDVVSHDGSRHRNMLADAAGKTMRVIVPASAATHVQARKGSTAVVEVRRGKSPDRVFAHPDHI
Ga0268265_111257112	3300028380	Switchgrass Rhizosphere	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVASSDGSPHHNLLAGAAGTTIHVIVPASAATRVVPPKGSMAVVEVRRGGSPGRVFANPDRITLRPG
(restricted) Ga0255310_102279311	3300031197	Sandy Soil	MTEVQIVENWSRIRGRVEEWKPPRRSGETGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRAGSPG
Ga0310887_111317422	3300031547	Soil	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVDDVVAEDGSRHRNLLAGTSGTTLQVKVPASVAADMAPRKGSTAVVDVRRGRSPHSVFAHPDRITLKP
Ga0307468_1002618781	3300031740	Hardwood Forest Soil	VPLDAGRGADSPRLPAHRRGERQVQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRT
Ga0307468_1010354781	3300031740	Hardwood Forest Soil	VQIVENWSRIRGRVEEWKPPSKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRTGSSGQLFANPDRMTLTLR
Ga0310907_107490872	3300031847	Soil	MPIVENWSRLRGRVEGWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTIVRVTVPASAAAQIQPRKGSTAVVDVRRGKVPDRYFAHPEHIRLTSK
Ga0310904_111516952	3300031854	Soil	MPIVENWSRLRGRVEGWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTIVRVTVPASAAAQIQPRKGSTAVVDVRRGKVPD
Ga0310892_106474372	3300031858	Soil	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVEDVVAEDGSRHRNLLAGTSGTTLEVKVPASVAADLAPRKGSTAVIDVRRGRSPQ
Ga0310885_104441752	3300031943	Soil	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVEDVVAEDGSRHRNLLAGTSGTTLEVKVPASVAADLAPRKGSTAVIDVRRGRSPQRVF
Ga0310902_110634572	3300032012	Soil	RLRGRVEGWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTIVRVTVPASAAAQIQPRKGSTAVVDVRRGKVPDRYFAHPEHIRLTSK
Ga0310906_114446641	3300032013	Soil	MPIVENWSRLRGRVQAWDPPKKAGDPGTLTLVVDRVDDVAAEDGTRHRNMLSRSAGTTVRVTVPASAAAQIKPRKGSKAVVDVRRGRVPDRLFAHPEHIKLTSK
Ga0310906_114517612	3300032013	Soil	RKQAGGASLMPIVENWSRLRGRVEGWDPPKKAGDPGTLTIAVDRVDDVPAPDGSRHRNMLSRTAGTIVRVTVPASAAAQIQPRKGSTAVVDVRRGKVPDRYFAHPEHIRLTSK
Ga0310890_110502061	3300032075	Soil	VQVAENWSRIRGRVEAWVPPRRDGDPGTLTLVVDRVEDVVAEDGSRHRNLLAGTSGTTLEVKVPASVAADLAPRKGSTAVIDVRRGRSPQRVFAHPDRITLKP
Ga0310890_112152861	3300032075	Soil	VNDTVQIVENWSRILGRVENWEPPRKSGGPGTLTIAVERVEDVASSDGSPHHNLLAGAAGTTIHVIVPASAATRVVPPKGSMAVVEVRRGGSPGRVFANPDRI
Ga0307470_104338412	3300032174	Hardwood Forest Soil	RRRHRLPLDAGRGADSPRLPAHRRGERQVQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRTGSPGQLFANPDRMTLTPR
Ga0307471_1010704492	3300032180	Hardwood Forest Soil	PPRSVGEPGTLTIAVAGVEDVVSRDGAPHRNLLSDAAGKTVHVIVPASAAKHVKAKKGSTAVVDVRRGRSPDRVFAHPDRITVTP
Ga0310896_100547922	3300032211	Soil	MPIVENWSRLRGRVEAWDPPKKAGDPGTLTIAVDRVDDVAAADGSRHRNMLSRTAGTTVRVTVPASAATQIQPRKGSTAVIDVRRGKVPDRYFAHPDHI
Ga0310810_108180221	3300033412	Soil	VQIAENWSRIRGRVTAWHPPRHAGESGTLTIAVDAVEDVVSRDGSRQRNLLADAAGTTVDVVVPASAARQIVADKGSTAVLDVRRGASATRLFAHPE
Ga0364925_0300721_314_583	3300034147	Sediment	VEKWDPPAKAGGSGTLTLAVEQVDDVTAADGTQHRNLLAGATGRTVRVTVPASAAAHVQPQKGEIAVLDVRRGQSPDRVFAHPEHINFL
Ga0364929_0067209_594_908	3300034149	Sediment	VQIVENWSRIRGRVEEWKPPRKSGEPGTLTIAVERVEDVASPDGSRHRNLLAGAAGTTIHVIVPASAAARVEPPKGSTAVVEVRRTGSPGQLFANPDRMTLTPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters