Metagenome / Metatranscriptome Family F073506

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073506
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	48 residues
Representative Sequence	MAKATTKLNAQDRVILFCAATGIDHAAVGILARAMQSMAIRGFIVHDRE
Number of Associated Samples	83
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.53 %
% of genes near scaffold ends (potentially truncated)	78.33 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.333 % of family members)
Environment Ontology (ENVO)	Unclassified (45.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.77% β-sheet: 0.00% Coil/Unstructured: 66.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF03237	Terminase_6N	2.50
PF02586	SRAP	2.50
PF11684	DUF3280	2.50
PF01717	Meth_synt_2	2.50
PF04392	ABC_sub_bind	2.50
PF03401	TctC	1.67
PF01527	HTH_Tnp_1	1.67
PF03979	Sigma70_r1_1	1.67
PF00484	Pro_CA	0.83
PF03992	ABM	0.83
PF02775	TPP_enzyme_C	0.83
PF01165	Ribosomal_S21	0.83
PF07045	DUF1330	0.83
PF13460	NAD_binding_10	0.83
PF13531	SBP_bac_11	0.83
PF13374	TPR_10	0.83
PF02705	K_trans	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.50
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	2.50
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.50
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.67
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.67
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.83
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.83
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.83
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.50 %
Unclassified	root	N/A	30.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.33 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.17 %
Unclassified	root	N/A	30.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.33 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.00 %
Afifellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae	1.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.50 %
Afifella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella	1.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.67 %
unclassified Afifella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella → unclassified Afifella	1.67 %
Bradyrhizobium rifense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium rifense	0.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.67 %
Afifella sp. IM 167	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella → unclassified Afifella → Afifella sp. IM 167	1.67 %
Bradyrhizobium sp. CCBAU 21365	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	0.83 %
Bradyrhizobium rifense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium rifense	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16739965	Not Available	1206	Open in IMG/M
3300000891\|JGI10214J12806_11855120	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300000956\|JGI10216J12902_112155592	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300002459\|JGI24751J29686_10080935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300004633\|Ga0066395_10255483	Not Available	941	Open in IMG/M
3300005332\|Ga0066388_101265066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 21365	1268	Open in IMG/M
3300005332\|Ga0066388_106143341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300005332\|Ga0066388_107219759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300005549\|Ga0070704_100841207	Not Available	822	Open in IMG/M
3300005713\|Ga0066905_101910115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300005713\|Ga0066905_102144334	Not Available	520	Open in IMG/M
3300005764\|Ga0066903_105836009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300005764\|Ga0066903_106397875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300005764\|Ga0066903_106398176	Not Available	614	Open in IMG/M
3300005764\|Ga0066903_106716540	Not Available	598	Open in IMG/M
3300005764\|Ga0066903_107033709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300005764\|Ga0066903_108691672	Not Available	516	Open in IMG/M
3300006028\|Ga0070717_10060796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3129	Open in IMG/M
3300006028\|Ga0070717_10805253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	855	Open in IMG/M
3300006604\|Ga0074060_11966271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300006796\|Ga0066665_10583009	Not Available	903	Open in IMG/M
3300006845\|Ga0075421_100818000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1071	Open in IMG/M
3300007076\|Ga0075435_101547510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300009147\|Ga0114129_10114690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3715	Open in IMG/M
3300009147\|Ga0114129_10143370	All Organisms → cellular organisms → Bacteria → Proteobacteria	3273	Open in IMG/M
3300009792\|Ga0126374_10350972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1012	Open in IMG/M
3300010043\|Ga0126380_10502912	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	931	Open in IMG/M
3300010046\|Ga0126384_10719384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300010046\|Ga0126384_12463477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300010048\|Ga0126373_10065181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3274	Open in IMG/M
3300010358\|Ga0126370_10833836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	826	Open in IMG/M
3300010359\|Ga0126376_12815426	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300010361\|Ga0126378_10385373	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300010362\|Ga0126377_12780698	Not Available	564	Open in IMG/M
3300010366\|Ga0126379_10225940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1823	Open in IMG/M
3300010366\|Ga0126379_11857409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300010376\|Ga0126381_101888283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300010398\|Ga0126383_10073344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2954	Open in IMG/M
3300010398\|Ga0126383_11353249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300012204\|Ga0137374_10477766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300012205\|Ga0137362_11296840	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300012355\|Ga0137369_10758056	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012361\|Ga0137360_10301887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1329	Open in IMG/M
3300012361\|Ga0137360_10303905	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300012948\|Ga0126375_11513562	Not Available	574	Open in IMG/M
3300012948\|Ga0126375_11642085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300012971\|Ga0126369_11889220	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300012971\|Ga0126369_12598544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella → unclassified Afifella → Afifella sp. IM 167	591	Open in IMG/M
3300015374\|Ga0132255_104109731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300016270\|Ga0182036_10111850	Not Available	1878	Open in IMG/M
3300016270\|Ga0182036_10450766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1011	Open in IMG/M
3300016270\|Ga0182036_11381207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300016270\|Ga0182036_11608245	Not Available	547	Open in IMG/M
3300016270\|Ga0182036_11625540	Not Available	544	Open in IMG/M
3300016422\|Ga0182039_10309422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1312	Open in IMG/M
3300021372\|Ga0213877_10085281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	946	Open in IMG/M
3300021444\|Ga0213878_10465980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300021560\|Ga0126371_10136457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2499	Open in IMG/M
3300021560\|Ga0126371_11717964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300021560\|Ga0126371_13909622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300024347\|Ga0179591_1102658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2697	Open in IMG/M
3300026334\|Ga0209377_1289407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	543	Open in IMG/M
3300026482\|Ga0257172_1022153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1121	Open in IMG/M
3300027643\|Ga0209076_1108249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	787	Open in IMG/M
3300027646\|Ga0209466_1081983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300027646\|Ga0209466_1098763	Not Available	591	Open in IMG/M
3300027875\|Ga0209283_10544505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300031226\|Ga0307497_10594211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300031543\|Ga0318516_10548896	Not Available	661	Open in IMG/M
3300031546\|Ga0318538_10129554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1323	Open in IMG/M
3300031546\|Ga0318538_10369526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300031546\|Ga0318538_10833873	Not Available	501	Open in IMG/M
3300031549\|Ga0318571_10143557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300031549\|Ga0318571_10208305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300031561\|Ga0318528_10176625	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300031573\|Ga0310915_10982704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031680\|Ga0318574_10904198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium rifense	517	Open in IMG/M
3300031681\|Ga0318572_10532055	Not Available	700	Open in IMG/M
3300031723\|Ga0318493_10307409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	856	Open in IMG/M
3300031736\|Ga0318501_10828628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300031747\|Ga0318502_10516011	Not Available	716	Open in IMG/M
3300031764\|Ga0318535_10505158	Not Available	537	Open in IMG/M
3300031769\|Ga0318526_10405511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300031770\|Ga0318521_10768753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300031793\|Ga0318548_10080718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1537	Open in IMG/M
3300031796\|Ga0318576_10425777	Not Available	627	Open in IMG/M
3300031798\|Ga0318523_10268635	Not Available	852	Open in IMG/M
3300031798\|Ga0318523_10670662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300031799\|Ga0318565_10171721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054	Open in IMG/M
3300031805\|Ga0318497_10235200	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300031833\|Ga0310917_10270370	Not Available	1146	Open in IMG/M
3300031833\|Ga0310917_10860123	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031835\|Ga0318517_10248719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300031846\|Ga0318512_10303463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	794	Open in IMG/M
3300031879\|Ga0306919_10659612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300031890\|Ga0306925_10561544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1209	Open in IMG/M
3300031894\|Ga0318522_10054660	Not Available	1417	Open in IMG/M
3300031896\|Ga0318551_10509311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300031897\|Ga0318520_10044239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2309	Open in IMG/M
3300031912\|Ga0306921_10190298	Not Available	2406	Open in IMG/M
3300031941\|Ga0310912_10074612	Not Available	2449	Open in IMG/M
3300031942\|Ga0310916_10165963	Not Available	1831	Open in IMG/M
3300031942\|Ga0310916_11158626	Not Available	640	Open in IMG/M
3300031946\|Ga0310910_10807627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300031947\|Ga0310909_11518257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300031954\|Ga0306926_10191662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2537	Open in IMG/M
3300032051\|Ga0318532_10152564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300032051\|Ga0318532_10192870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300032059\|Ga0318533_10260866	Not Available	1252	Open in IMG/M
3300032059\|Ga0318533_10304847	Not Available	1156	Open in IMG/M
3300032065\|Ga0318513_10124523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1218	Open in IMG/M
3300032091\|Ga0318577_10237345	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300032094\|Ga0318540_10464504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Afifellaceae → Afifella → unclassified Afifella → Afifella sp. IM 167	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.00%
Host-Associated	Host-Associated	5.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Plants	Host-Associated → Plants	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Loam	Environmental → Terrestrial → Soil → Loam	15.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02011590	2088090014	Soil	MAKATTKLNAQDRVILFCAATGIDHAAVGILARAMQSMAIRGFIVHDRE
JGI10214J12806_118551203	3300000891	Soil	MAKPDDELSAQDRVILFCAATGIAPAAVGILAHAMQSM
JGI10216J12902_1121555922	3300000956	Soil	MAKATTKLSAQDRVILFCAATGIDHAAVGILAHAMQSMAWP*
JGI24751J29686_100809352	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKLTARDRVILFCAATGIDHAAVGIPARDMQSLAVRGFIAHGRESGAYALTDAGYA
Ga0066395_102554833	3300004633	Tropical Forest Soil	MTKATTQLNAVDGVILFCTATGIDHARVGILARAMQSMAIRGFIAH
Ga0066388_1012650661	3300005332	Tropical Forest Soil	MAKVTTPSTAQEHVILFCAATGISPTAVGITAHAMQSMAIKGFIVHNRETGDYALTDS
Ga0066388_1061433412	3300005332	Tropical Forest Soil	MTKATTQLNAVDGVILFCTATGIDHARVGILARAMQSMAIRGFIAHDRESG
Ga0066388_1072197592	3300005332	Tropical Forest Soil	MAKATTKLNPQDRVILFCTATGIDHAAVGIPARAMQSMAIRGFIVHDRECGAYALTDADARRSP*
Ga0070704_1008412071	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKLTARDRVILFCAATGIDHAAVGIPARDMQSLAVRGFIAHGRES
Ga0066905_1019101151	3300005713	Tropical Forest Soil	VRGGGGAMAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIRGYIE
Ga0066905_1021443341	3300005713	Tropical Forest Soil	MAKATTKLTAQDRIILFCVATGVDHAAVRILAQAMQSMAIRGF
Ga0066903_1007403994	3300005764	Tropical Forest Soil	MAKVTKPSTAQERVILFCAATGISPTAVGITAHAMQSMAIKGFIVHN
Ga0066903_1058360091	3300005764	Tropical Forest Soil	MAKATTKLNAQDRVILFCAAAGIEHAAIGILARAMQSMAARE*
Ga0066903_1063978751	3300005764	Tropical Forest Soil	MAKVTTPFTAQERVILFCAATGISPTAVGITAHAMQ
Ga0066903_1063981762	3300005764	Tropical Forest Soil	MAKATTKLNAQDRVTLFCAATDIDHAAVGILARAMQSMAVRGLA*
Ga0066903_1067165401	3300005764	Tropical Forest Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILPRAMQSMA
Ga0066903_1070337091	3300005764	Tropical Forest Soil	MAKATTKLNAEDPVILFCAATGIDHAAVGILARAMQSMAVRGYIEHDQESGA
Ga0066903_1086916723	3300005764	Tropical Forest Soil	MEKPTTKLGAQDRVILFCVAAGIDHGAAGILAHAMQ
Ga0070717_100607964	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAKATTKLNAQDRVILFCAATGIDHAAIGILATQ*
Ga0070717_108052532	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAKTTTKLSAQDRVILFCAATGIDHAAVGILAHAMQSMAIRGFIAHNRESGTEHPA*
Ga0074060_119662711	3300006604	Soil	MAKATTKLTAQERVVLFCTATGISHTAVGITAHAMQSMAVR
Ga0066665_105830091	3300006796	Soil	MAKATTKLNAQDRVILFCAATGIDHAAVGILARAM
Ga0075421_1008180001	3300006845	Populus Rhizosphere	MAKATTKLSAEDRVILFCAATGIDHAAIGILAHAMQAMAIRGFITHDRESGAYAL
Ga0075435_1015475102	3300007076	Populus Rhizosphere	TNLSAQDQVILFCAATGIDRAAVGILAHAMQSMVIQGFIAHNRESGA*
Ga0114129_101146901	3300009147	Populus Rhizosphere	MTKKLTARDRVILFCAATGIDHAAVGIPARDMQSLAVRGFIAHGRESGAYALTDAGYAAL
Ga0114129_101433709	3300009147	Populus Rhizosphere	MAKATTKLNAQDRVILFCTATGIDHAAVGIPAHAMQSMA
Ga0126374_103509721	3300009792	Tropical Forest Soil	MAKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGVYALPTFLENRC*
Ga0126380_105029123	3300010043	Tropical Forest Soil	MMENPRTKLSAPDRVILFCVATGIHHGSVGITDHSMQSMAIRGFIAHNRESGA
Ga0126384_107193842	3300010046	Tropical Forest Soil	MEKPTTKLSAQDRLFCVATGLDHGAAGILAHAMQSMAIRGFIAHNREKRGVYADGQRPRYAQGHP*
Ga0126384_124634771	3300010046	Tropical Forest Soil	MAKATTKLNAEDRMILFCAATGIDHAAVGIRARAMQSMAIRGYLEHDQESGAHVLTDSG
Ga0126373_100651814	3300010048	Tropical Forest Soil	LEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGVYALPTFLENRC*
Ga0126370_108338362	3300010358	Tropical Forest Soil	VAKETTKLTAQDQVILFCTATGISHVAVGITVHAMQSMAVRGFIVHDRLPIADPTSAP*
Ga0126376_128154261	3300010359	Tropical Forest Soil	MEKPTTTLSPQDRVILFCVATGIVHGSVGITDHAMQSMAIRGFIAHNRESG
Ga0126378_103853731	3300010361	Tropical Forest Soil	MAKTTTNLNTEVCAGTGIDHAAVGITAHAMQSMAVRGFIGA*
Ga0126377_127806981	3300010362	Tropical Forest Soil	MAKATTKLTAKDRIILFCVANGIDHAAVRILAQAMQSMAIR
Ga0126379_102259401	3300010366	Tropical Forest Soil	MTTKLDAQDRVILFCAAAGIDQRAVGILARAMQSMAVRGFIVHNRETGAY
Ga0126379_118574092	3300010366	Tropical Forest Soil	MAKATTKLNAQDRVILFCAATGIDHLAVGILARAMQSMAIRGYIEHDH
Ga0126381_1018882831	3300010376	Tropical Forest Soil	VAKETTKLTAQDRVILFCVATSISHVAVGVTAHAMQSMAVRGFIVHDRESGTLYAHG*
Ga0126383_100733444	3300010398	Tropical Forest Soil	MEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAARGFIAHNRETGVYALPTFLENRC*
Ga0126383_113532492	3300010398	Tropical Forest Soil	MEKPTTKLSAQDRLFCVATGLDHGAAGILAHAMQSMAIRGFIAHNREKRGVYADGQRQRYAQGHP*
Ga0137374_104777664	3300012204	Vadose Zone Soil	MAKPTTNLSAQDRVILFCAATGIDHAAVGILAHAMQSMAIRGFI
Ga0137362_112968403	3300012205	Vadose Zone Soil	MAKTTTKLSAQDRVILFCAATGIDHAAVGILAHAMQS
Ga0137369_107580562	3300012355	Vadose Zone Soil	MAKTTTKLSAQDRVILFCAATGIDHAAVGILAHAMQSMAWP*
Ga0137360_103018871	3300012361	Vadose Zone Soil	MAKATTKLNAEDRVILFCAATGIDHAAVGILAHAMQSMAVRGFIAHNRATGV*
Ga0137360_103039051	3300012361	Vadose Zone Soil	MAKATTKLNAQDRVILFCGATGIDHAAAGILAHAMQ
Ga0126375_115135621	3300012948	Tropical Forest Soil	MAKTTTKLNAQDRVIPFCAATGIDHVAVGILARERGV
Ga0126375_116420852	3300012948	Tropical Forest Soil	MAKTTTKLSAEDRVILFCAATGIDHAAVGILAHAMQSMAIRGFITHDRE
Ga0126369_118892201	3300012971	Tropical Forest Soil	MSKTTTKLTAQDRVILFCTATGIDHAAVGILAHAMRSMAIRGFIAH
Ga0126369_125985442	3300012971	Tropical Forest Soil	MTKATTQLNAVDRVILFCTATGIDHARVGILARAMQSMAIRGFIAH
Ga0132255_1041097311	3300015374	Arabidopsis Rhizosphere	MAKATTKLSAEDRVILFCAATGIDHAAVGILAHAMQSMAIRGFITHDRESGAY
Ga0182036_101118501	3300016270	Soil	MAKLTTNLSAQDRVILFCAATGIDHAAVGIVAKAMQ
Ga0182036_104507661	3300016270	Soil	MAKTTTELSAQERVILFCAATGIDHAAVGILARAMQSMAVRGF
Ga0182036_113812071	3300016270	Soil	MPKKSTTKLNAQDRVSLFCAATGIDHAAVGIVARAMQSMAIRGFIVHDRETGAYA
Ga0182036_116082452	3300016270	Soil	MAKATTKLNAQDRVILFCAATGIDHAAVGITARAMQ
Ga0182036_116255401	3300016270	Soil	MAKATAKLNAEDRVILFCAATGIDHAAVGITARAMQA
Ga0182039_103094223	3300016422	Soil	MAKTTTELSAQERVILFCAATGIDHAAVGILARAMQSMAVRGFI
Ga0213877_100852813	3300021372	Bulk Soil	MAKTTTELNAQERVILFCAATGIDHAAVGILARAMQSMAVRGFIEHD
Ga0213878_104659802	3300021444	Bulk Soil	MAKATTKLNPQDRVILFCTATGIDHAAVGIPARAMQSMAIRGFIVHDRESGA
Ga0126371_101364573	3300021560	Tropical Forest Soil	LEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGVYALPTFLENRC
Ga0126371_104379204	3300021560	Tropical Forest Soil	MAKVTTPFTAEERVILFCAATGISPTSVGVTAHAMQSMAIKG
Ga0126371_117179641	3300021560	Tropical Forest Soil	VAKETTKLTAQDRVILFCVATSISHVAVGVTAHAMQSMAVRGFIVHDRESG
Ga0126371_131568221	3300021560	Tropical Forest Soil	MAKVTTPFTAEERVILFCAATGISPTAVGITAHAMQSMA
Ga0126371_139096221	3300021560	Tropical Forest Soil	MSKTTTKLTAQDRVILFCTATGIDHAAVGILAHAMRSMAIRGFIAHNRETGVYA
Ga0179591_11026581	3300024347	Vadose Zone Soil	MAKATTKLNAQDRVTLFCAATGIDHAAVGILAHAMQSMTIRGFIAHNRESGAYALTGS
Ga0209377_12894072	3300026334	Soil	MAKATTKLNAQDRVILFCAATGIDHAAVGILARAMQSMAIR
Ga0257172_10221531	3300026482	Soil	MAKATTKLNAQDRVILFCAATGIEHAAVGIPARTMQSMAVRGFIVHNRESGGYALT
Ga0209076_11082492	3300027643	Vadose Zone Soil	MAKATTKLNAQDRVILFCAATGIEHAAVGIPARTMQSMAVRGFIVHNRESGGYALTDS
Ga0209466_10819832	3300027646	Tropical Forest Soil	MEKPTTKLSAQDRLFCVATGLDHGAAGILAHAMQSMAIRGFIAHNREKRGVYADGQRPRYAQG
Ga0209466_10987633	3300027646	Tropical Forest Soil	MAKATTKLTAQDRIILFCVATGIDHAAVRVLAQAMQSMAIRGL
Ga0209283_105445051	3300027875	Vadose Zone Soil	MAKATTKLTAQEHVILFCTATGISHTAVGITAHAMQSMAVRGFIAHNRETGVYALTDSG
Ga0307497_105942111	3300031226	Soil	MTKQLTAQDRVILFCAATGIDHAAVGIPARDMQSMAIRGFIAHGRESEAYALTDA
Ga0318516_105488961	3300031543	Soil	MAKAATKLNAQDRCAATGIDDAAVGILAHAMHGSPYRRYVL
Ga0318538_101295545	3300031546	Soil	MAKKTTTKLNAQDRVILFCAATGIDHAAVGILAHAMQSMAVRGFIADNRETGMY
Ga0318538_103695261	3300031546	Soil	MAKATTKLNAPDRMILFCAAAGIEHGAVGILARAMQSMAIRGYIEHDHESGAYV
Ga0318538_108338732	3300031546	Soil	MAKATAKLNAEDRVILFCAATGIDHAAVGILARAMQSM
Ga0318571_101435573	3300031549	Soil	MAKTTTELNAQERVILFCAATGIDHAAVGILARAMQSM
Ga0318571_102083052	3300031549	Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIRGYIEHDQESGAYVLTA
Ga0318528_101766254	3300031561	Soil	MAKATTKLNAQDRVILFCAAAGIEHAALGILARAMQSMAIRGYI
Ga0310915_109827041	3300031573	Soil	MAKVTTPFTAQERVILFCAATGISPTAVGITAHAMQSMAIKGFIVHNRETGDYALTD
Ga0318574_109041982	3300031680	Soil	MAKATTNLTAQERVILFCAATGINHAAVGILAHAMQSMAVRGFIAHN
Ga0318572_105320552	3300031681	Soil	MANATTKLNAQDRVILFCAAAGIDHAAVGILARAMQSMAIRGYMQ
Ga0318493_103074092	3300031723	Soil	MAKATTKLNAEDRMILFCAATGIDHAAVGIRARAMQSMAIRGYLEHDQESGTY
Ga0318501_108286281	3300031736	Soil	MAKATTKLNAQDRVILFCAAAGIEHAALGILARAMQSMAIRGYIEHDHESGA
Ga0318502_105160112	3300031747	Soil	MAKATTKLNPQDRAILFCTATGIDHATVGIPARAMQSIAIRGFIVH
Ga0318535_105051581	3300031764	Soil	MANATTKLNAQDRVILFCAAAGIDHAAVGILARAMQSMAIRGYM
Ga0318526_104055111	3300031769	Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIRGYIE
Ga0318521_107687531	3300031770	Soil	MAKKTTTKLNAQDRVILFCAATGIDHAAVGILAHAMQSMAVRGFIA
Ga0318543_104738662	3300031777	Soil	MAKVTTPFTAQERVILFCAATGISPTAVGITAHAMQSMAIKGFI
Ga0318548_100807185	3300031793	Soil	MKLSAQDRVILFCAATGIDHAAVGITARAMQAVAIRGFIAHNRESGAYTLTDSGR
Ga0318576_104257772	3300031796	Soil	LEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGV
Ga0318523_102686352	3300031798	Soil	MAKKTTTKLNAQDRVILFCAATGIDHAAVGILAHAMQ
Ga0318523_106706621	3300031798	Soil	MAKVTTPFTAQERVILFCAATGISPTAVGITAHAMQSMAIKGFIVYNRETGDYALTD
Ga0318565_101717211	3300031799	Soil	MKLSAQDRVILFCAATGIDHAAVGITARAMQAVAIRGFIAHNRESGAYTLTDRGR
Ga0318497_102352003	3300031805	Soil	MAKATTKLNAQDRVILFCAAAGIEHAALGILARAMQSMAIRGYIE
Ga0310917_102703701	3300031833	Soil	MANATTKLNAQDRVILFCAAAGIDHAAVGILARAMQSMAIRGYMQHDRESGAYVL
Ga0310917_106158531	3300031833	Soil	MAKVTTPFTAQERVILFCAATGISPIAVGITAHAMQSMAIKG
Ga0310917_108601232	3300031833	Soil	MAKATTKLNAQDRVILFCAATGIDHAAVGILARAMQSMAIRGFIVHDRESGAY
Ga0318517_102487192	3300031835	Soil	MAKATTKLNAEDRMILFCAATGIDHAAVGIRARAMQSMAIRGYLEHDQESGTYVLTDS
Ga0318512_103034632	3300031846	Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQ
Ga0306919_106596122	3300031879	Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIR
Ga0306925_105615441	3300031890	Soil	MAKATTKLNAQDRVILFCAATGIDHVAVGIVARAMQSMAIRGFIVHNRESGVYALTDS
Ga0318522_100546601	3300031894	Soil	VRGGCGTMAKATTKLNAQDRVILFCAAAGIEHAAVGILPRAMQSMAIRGYIE
Ga0318551_103217791	3300031896	Soil	MKLSAQDRVILFCAATGIDHAAVGITARAMQAVAIRGFIAHNRESGAYTLTD
Ga0318551_105093112	3300031896	Soil	MAKATTKLNPQDRVILFCTATGIDHATVGIPARAMQSIA
Ga0318520_100442391	3300031897	Soil	MKLSAQDRVILFCAATGIDHAAVGITARAMQAVAIRGFIAHNRESGAYTLTDSG
Ga0306921_101902983	3300031912	Soil	LEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGVYALPTFL
Ga0310912_100746121	3300031941	Soil	MAKLTTNLSAQDRVILFCAATGIDHAAVGIVAKAMQS
Ga0310916_101659631	3300031942	Soil	MAKLTTNLSAQDRVILFCAATGIDHAAVGIVAKAM
Ga0310916_111586261	3300031942	Soil	MAKATTKLNAQDRVILFCAATGIDHLAVGIPARAMQSM
Ga0310916_116068021	3300031942	Soil	MAKVTTPFTPQERVILFCAATGISPTAVDITAHAMQSMAIKGFIVH
Ga0310910_108076271	3300031946	Soil	MAKATTKLNAQDRVILFCAAAGIEHAAVGILARAMQSMAIRSYIEHDH
Ga0310909_115182571	3300031947	Soil	LEKPTTKLNAQDRVILFCAATGIDYAAVGIVAHAIQSMAVRGFIAHNRETGVYALPTFLENR
Ga0306926_101916626	3300031954	Soil	MAKTTTELSAQERVILFCAATGIDHAAVGILARAMQSMAVR
Ga0318532_101525641	3300032051	Soil	MAKATTKLNAPDRVILFSAGIEHGAVGILARAMQSMAIRGYIEHDHESGAYVLTASGRA
Ga0318532_101928702	3300032051	Soil	MAKATTQLNAVDRVILFCTATGIDHARVGILARAMQSMAIRGFIAHDRE
Ga0318533_102608661	3300032059	Soil	MAKKTTTKLNAQDRVILFCAATGIDHAAVGILAHAMQS
Ga0318533_103048473	3300032059	Soil	MAKATAKLNAEDRVILFCAATGIDHAAVGILARAMQSMAVREYI
Ga0318513_101245233	3300032065	Soil	MAKATTKLNAEDRMILFCAATGIDHAAVGIRARAMQSMAIRGYLEHDQESGTYLLTD
Ga0318577_102373453	3300032091	Soil	MAKATTKLNAQDRVILFCAAAGIEHAALGILARAM
Ga0318540_104645042	3300032094	Soil	MTKATTQLNAVDGVILFCTATGIDHARVGILARAMQSMAIRGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073506

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences