Metagenome / Metatranscriptome Family F073473

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073473
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	64 residues
Representative Sequence	MKRILLLTGLCSLLSTTGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Number of Associated Samples	79
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.47 %
% of genes near scaffold ends (potentially truncated)	15.83 %
% of genes from short scaffolds (< 2000 bps)	67.50 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (22.500 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (35.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 17.78% β-sheet: 0.00% Coil/Unstructured: 82.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01914	MarC	9.17
PF04333	MlaA	9.17
PF01553	Acyltransferase	5.83
PF00072	Response_reg	4.17
PF00196	GerE	3.33
PF16561	AMPK1_CBM	2.50
PF01863	YgjP-like	2.50
PF13426	PAS_9	1.67
PF13442	Cytochrome_CBB3	1.67
PF08673	RsbU_N	0.83
PF03109	ABC1	0.83
PF02706	Wzz	0.83
PF07690	MFS_1	0.83
PF12697	Abhydrolase_6	0.83
PF00487	FA_desaturase	0.83
PF02518	HATPase_c	0.83
PF01613	Flavin_Reduct	0.83
PF13614	AAA_31	0.83
PF01408	GFO_IDH_MocA	0.83
PF07332	Phage_holin_3_6	0.83
PF07610	DUF1573	0.83
PF00041	fn3	0.83
PF01156	IU_nuc_hydro	0.83
PF16591	HBM	0.83
PF02347	GDC-P	0.83
PF11752	DUF3309	0.83
PF00092	VWA	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	9.17
COG2853	Lipoprotein subunit MlaA of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	9.17
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	2.50
COG2208	Phosphoserine phosphatase RsbU, regulator of sigma subunit	Transcription [K]	1.67
COG0403	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	Amino acid transport and metabolism [E]	0.83
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.83
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.83
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.83
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.83
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	0.83
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.83
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.83 %
Unclassified	root	N/A	34.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.83 %
Unclassified	root	N/A	34.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.83 %
Unclassified	root	N/A	34.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	28.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	28.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	6.67 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	6.67 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.67 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5.83 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.67 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	2.50 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.67 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	2.50 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.67 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2.50 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.17 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.67 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2.50 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10013145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	5398	Open in IMG/M
3300004631\|Ga0058899_11771594	Not Available	504	Open in IMG/M
3300005538\|Ga0070731_10002109	All Organisms → cellular organisms → Bacteria	19470	Open in IMG/M
3300006059\|Ga0075017_100762659	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300006638\|Ga0075522_10000186	All Organisms → cellular organisms → Bacteria	42123	Open in IMG/M
3300006638\|Ga0075522_10004626	All Organisms → cellular organisms → Bacteria	9778	Open in IMG/M
3300009502\|Ga0114951_10475437	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009624\|Ga0116105_1040355	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300009644\|Ga0116121_1262904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	553	Open in IMG/M
3300009762\|Ga0116130_1081226	Not Available	1017	Open in IMG/M
3300010343\|Ga0074044_10081016	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300014153\|Ga0181527_1359398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300014155\|Ga0181524_10013714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6340	Open in IMG/M
3300014156\|Ga0181518_10461119	Not Available	606	Open in IMG/M
3300014159\|Ga0181530_10660865	Not Available	507	Open in IMG/M
3300014160\|Ga0181517_10002159	All Organisms → cellular organisms → Bacteria	20585	Open in IMG/M
3300014160\|Ga0181517_10021110	All Organisms → cellular organisms → Bacteria	4490	Open in IMG/M
3300014160\|Ga0181517_10164312	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300014160\|Ga0181517_10485281	Not Available	626	Open in IMG/M
3300014160\|Ga0181517_10616554	Not Available	542	Open in IMG/M
3300014162\|Ga0181538_10744290	Not Available	506	Open in IMG/M
3300014164\|Ga0181532_10433765	Not Available	726	Open in IMG/M
3300014165\|Ga0181523_10605015	Not Available	602	Open in IMG/M
3300014168\|Ga0181534_10014048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4149	Open in IMG/M
3300014168\|Ga0181534_10029328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2740	Open in IMG/M
3300014168\|Ga0181534_10033943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2532	Open in IMG/M
3300014169\|Ga0181531_10068285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2094	Open in IMG/M
3300014200\|Ga0181526_10043723	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2866	Open in IMG/M
3300014201\|Ga0181537_10153881	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300014201\|Ga0181537_10188128	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300014201\|Ga0181537_10486418	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300014491\|Ga0182014_10367293	Not Available	724	Open in IMG/M
3300014493\|Ga0182016_10000217	All Organisms → cellular organisms → Bacteria	70234	Open in IMG/M
3300014494\|Ga0182017_10005668	All Organisms → cellular organisms → Bacteria	9261	Open in IMG/M
3300014494\|Ga0182017_10974177	Not Available	509	Open in IMG/M
3300014495\|Ga0182015_10347034	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	964	Open in IMG/M
3300014498\|Ga0182019_10830790	Not Available	662	Open in IMG/M
3300014498\|Ga0182019_11308276	Not Available	535	Open in IMG/M
3300014654\|Ga0181525_10456077	Not Available	705	Open in IMG/M
3300014657\|Ga0181522_10146316	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300014839\|Ga0182027_10030079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7072	Open in IMG/M
3300014839\|Ga0182027_10064321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4528	Open in IMG/M
3300014839\|Ga0182027_10083962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	3878	Open in IMG/M
3300014839\|Ga0182027_10243996	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300014839\|Ga0182027_10252754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2015	Open in IMG/M
3300014839\|Ga0182027_10421555	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300014839\|Ga0182027_10782239	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1001	Open in IMG/M
3300014839\|Ga0182027_11395060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	694	Open in IMG/M
3300014839\|Ga0182027_11470630	Not Available	671	Open in IMG/M
3300017821\|Ga0187812_1130601	Not Available	813	Open in IMG/M
3300017924\|Ga0187820_1061178	Not Available	1032	Open in IMG/M
3300017936\|Ga0187821_10414804	Not Available	553	Open in IMG/M
3300017948\|Ga0187847_10280332	Not Available	910	Open in IMG/M
3300017948\|Ga0187847_10406334	Not Available	749	Open in IMG/M
3300017988\|Ga0181520_10013864	All Organisms → cellular organisms → Bacteria	10082	Open in IMG/M
3300017988\|Ga0181520_10024493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6661	Open in IMG/M
3300017988\|Ga0181520_10043834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4377	Open in IMG/M
3300017988\|Ga0181520_10127436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2115	Open in IMG/M
3300017988\|Ga0181520_10594267	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300017995\|Ga0187816_10402593	Not Available	609	Open in IMG/M
3300017998\|Ga0187870_1072410	Not Available	1398	Open in IMG/M
3300018018\|Ga0187886_1100623	Not Available	1206	Open in IMG/M
3300018033\|Ga0187867_10685440	Not Available	558	Open in IMG/M
3300018034\|Ga0187863_10059342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2175	Open in IMG/M
3300018034\|Ga0187863_10077867	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300018034\|Ga0187863_10321819	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300018037\|Ga0187883_10227076	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300018047\|Ga0187859_10189452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1096	Open in IMG/M
3300018047\|Ga0187859_10785519	Not Available	546	Open in IMG/M
3300021181\|Ga0210388_10565482	Not Available	996	Open in IMG/M
3300021405\|Ga0210387_10076048	All Organisms → cellular organisms → Bacteria	2759	Open in IMG/M
3300021420\|Ga0210394_10928640	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300021433\|Ga0210391_10422048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300022524\|Ga0224534_1000461	All Organisms → cellular organisms → Bacteria	26105	Open in IMG/M
3300022524\|Ga0224534_1007431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3727	Open in IMG/M
3300022526\|Ga0224533_1001481	All Organisms → cellular organisms → Bacteria	4226	Open in IMG/M
3300023088\|Ga0224555_1025784	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300023091\|Ga0224559_1291792	Not Available	543	Open in IMG/M
3300025633\|Ga0208480_1025405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1719	Open in IMG/M
3300025862\|Ga0209483_1000871	All Organisms → cellular organisms → Bacteria	24467	Open in IMG/M
3300025862\|Ga0209483_1001698	All Organisms → cellular organisms → Bacteria	16408	Open in IMG/M
3300025864\|Ga0209429_10174903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	887	Open in IMG/M
3300027854\|Ga0209517_10012333	All Organisms → cellular organisms → Bacteria	9115	Open in IMG/M
3300027869\|Ga0209579_10004478	All Organisms → cellular organisms → Bacteria	9755	Open in IMG/M
3300028556\|Ga0265337_1022992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1923	Open in IMG/M
3300028556\|Ga0265337_1026402	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300028556\|Ga0265337_1049234	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300028556\|Ga0265337_1232084	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300028558\|Ga0265326_10059300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1082	Open in IMG/M
3300028563\|Ga0265319_1006508	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5399	Open in IMG/M
3300028563\|Ga0265319_1064960	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300028573\|Ga0265334_10104664	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300028577\|Ga0265318_10224400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	686	Open in IMG/M
3300028653\|Ga0265323_10078745	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300028666\|Ga0265336_10174816	Not Available	638	Open in IMG/M
3300028800\|Ga0265338_10004397	All Organisms → cellular organisms → Bacteria	19064	Open in IMG/M
3300028800\|Ga0265338_10566923	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300028909\|Ga0302200_10198460	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300029922\|Ga0311363_10993694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	737	Open in IMG/M
3300029957\|Ga0265324_10203047	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	673	Open in IMG/M
3300030503\|Ga0311370_11541435	Not Available	692	Open in IMG/M
3300030877\|Ga0265777_115678	Not Available	593	Open in IMG/M
3300031232\|Ga0302323_102452729	Not Available	595	Open in IMG/M
3300031240\|Ga0265320_10530985	Not Available	520	Open in IMG/M
3300031251\|Ga0265327_10050848	Not Available	2166	Open in IMG/M
3300031251\|Ga0265327_10435922	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300031344\|Ga0265316_10127797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1916	Open in IMG/M
3300031344\|Ga0265316_10686099	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300031344\|Ga0265316_10902090	Not Available	617	Open in IMG/M
3300031344\|Ga0265316_11258831	Not Available	511	Open in IMG/M
3300031524\|Ga0302320_10358130	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300031524\|Ga0302320_10643165	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300031670\|Ga0307374_10521801	Not Available	631	Open in IMG/M
3300031788\|Ga0302319_10718275	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300033824\|Ga0334840_180121	Not Available	544	Open in IMG/M
3300034124\|Ga0370483_0256866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	599	Open in IMG/M
3300034282\|Ga0370492_0132436	Not Available	1020	Open in IMG/M
3300034282\|Ga0370492_0206268	Not Available	801	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.67%
Host-Associated	Host-Associated	18.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	42.50%
Aquatic	Environmental → Aquatic	39.17%
Plants	Host-Associated → Plants	18.33%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	38.33%
Soil	Environmental → Terrestrial → Soil	30.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.33%
Peat	Environmental → Terrestrial → Peat	11.67%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.67%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Loam	Environmental → Terrestrial → Soil → Loam	0.83%
Clay	Environmental → Terrestrial → Soil → Clay	0.83%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	31.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	13.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.17%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	22.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	18.33%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	10.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.17%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.00%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	5.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.33%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.33%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.50%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.50%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022526	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028653	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG	Host-Associated	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030877	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031240	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG	Host-Associated	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100131455	3300000567	Peatlands Soil	MKKILYLTSIAALLSTTGCIFPEGDRGGHEHARYEHHDDVVVGPPVVVVRAPALVVRPPEVIVR*
Ga0058899_117715941	3300004631	Forest Soil	MKMILLFICFVTLLTTTGCIIPEGGRGGHARYEHHDEVVVGPPAVVLPVPEVIVR*
Ga0070731_100021099	3300005538	Surface Soil	MNQIMKKFLFLTGIVSLLSTTGCIFPEGGRGGRARYEHHDAVVVGPPAVVVRAPEVVLRPPEVIVR*
Ga0075017_1007626592	3300006059	Watersheds	MKTILLLAGAVTLLMTTGCLVSEGGRYGHYRGHERYEHHEAVIVGPPVVEVRAPVLEVRPPVVIVR*
Ga0075522_1000018634	3300006638	Arctic Peat Soil	MLPDMKKILYLTGIVTLLTTSGCIVPEGGRHEHARRYEHHDAVIVRPPAVVVHTPEVVVRPPEVIVR*
Ga0075522_100046267	3300006638	Arctic Peat Soil	MKKILLLTGVTTLLSTTGCIVPEGGPREHARFEHHDEVVVEPRAVIVAPPVVVVRPPEVIVR*
Ga0114951_104754372	3300009502	Freshwater	MKKLLLFAAMAFLLTTTGCLVAEGGRGHGRYEHGGAVIVGPPVVEVRVPVVEVRPPMVIVR*
Ga0116105_10403552	3300009624	Peatland	MKKILYLTGMFLLLSTTGCIFPGDGRDGHARYEHSDDMFVGPAAVEVPGPAVVVRPPEVIVR*
Ga0116121_12629041	3300009644	Peatland	MKKFLFLAGMISLVSTTGCIFPEGGRGGHARYEHHDEAVVGPPALVVRAPEVVVRPPE
Ga0116130_10812262	3300009762	Peatland	MKKILYLTGIVALLSTTGCIFPEGERGGHARYEHHDDVIVGPPAVVVSAPEVVVRPPEVIVR*
Ga0074044_100810164	3300010343	Bog Forest Soil	MKKILHLIGIATLLSTTGCIFPGGERGGQGHARYESHPVIVGPPVVVVQAPELVVRPPEVIVR*
Ga0181527_13593982	3300014153	Bog	MKKILFLTGMITLLSTTGCIFPGGERHEQARYEHHDEVLVGPPAVVVSVPEVVVRPPEVIVR*
Ga0181524_100137147	3300014155	Bog	MKKILFLTGMITLLSTTGCIFPGGERHEQARYEHHDEVLVGPPAVVVSVQEVVVRPPEVIVR*
Ga0181518_104611192	3300014156	Bog	MNQIMKKILFLTGIVSLLTTTRCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVAVRPPEVIVP*
Ga0181530_106608652	3300014159	Bog	MKKILFLTGIISLLTTTGCIFPGGERHDEHARYENRDAVIVGPPAVVVRAPEVEVRPPEVIVR*
Ga0181517_100021598	3300014160	Bog	MKKILYLTGIATLLSTTGCIFPGGDRGGHARYEHHDAVVVGPPVVEVRAPEVVVRPPEVIVR*
Ga0181517_100211101	3300014160	Bog	MKNILLIIAFASLLSTTGCLVSDGGRGEHARYEHHDAVIVGPPVVEVRAPELDVRPPEVIVR*
Ga0181517_101643123	3300014160	Bog	MNKILHLIAIATLLSTAGCIFPEGDRGGHARYEHHDDVVVGPPVVVVRAPELVVRPPEVIVR*
Ga0181517_104852812	3300014160	Bog	MKTILLIAGLISLLSTTSCIVPVGDRHGHARYERHDEVIGPPVVVVRAPEVVVRPPEIIVR*
Ga0181517_106165541	3300014160	Bog	KILHLIAIVTLLSTTGCIFPEGGRGGHARYEHHDDVVVGPPAVVVRAPELVVRPPEVIVR
Ga0181538_107442901	3300014162	Bog	MKKILYLTGIVALLSTTGCIVADGGGRHAGYGRHDDVIVGPPAVVVSAPEVVVRPPEVIVR*
Ga0181532_104337652	3300014164	Bog	VTSPDMKKILYLTGIVALLSTTGCIFPEGERGGHARYEHHDDVIVGPPAVVVSAPEVVVRPPEVIVR*
Ga0181523_106050151	3300014165	Bog	KILYLTVIATLLSTTGCIFPGGDRGGHADARHEHHDDAIVGPPAVVVSAPEVVVRPPEVIVR*
Ga0181534_100140482	3300014168	Bog	MSPDMKKIIYLAGMAALFSTSGCIVADGGHGGHAGYDHRDAVVVGPPVVVVRAPVMVVRPPEVIVR*
Ga0181534_100293282	3300014168	Bog	MEIPARRVTSQDMKKILHLIAIVTLLSTTGCIFPEGGRGGHARYEHHDDVVVGPPAVVVRAPELVVRPPEVIVR*
Ga0181534_100339433	3300014168	Bog	MKKILNLIGIAALLSTGGCLVSDGGQGGHARYEHHDAVVVGSPVVVVHVPEVVVRPPIVIVP*
Ga0181531_100682853	3300014169	Bog	MKKFLFLTGIVTLLSTTGCIVADGDRGGHEYARYEHHDAVVVGPPALVVRPPEVIVR*
Ga0181526_100437233	3300014200	Bog	VFPESNMSQIMKRILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR*
Ga0181537_101538812	3300014201	Bog	MKKILYLTGIITLLSTTGCIVPEGDRGGHARYEHNDGYSAGPPAVVVRSPEVVVRPPEVIVR*
Ga0181537_101881284	3300014201	Bog	MNQIMKRILFLTGVVTLLSTTGCIFPEGGRREHAGYEHHDAVIVGPPAVVVRVPEVVLRPPEVIVR*
Ga0181537_104864181	3300014201	Bog	MWFRQAITTLMKKILFLAGMAALISTSGCIVPVRDGHEHARYEHHDDVIVGPPVVVVPAPVVVVRPPELIIR*
Ga0182014_103672931	3300014491	Bog	MKIPDRRVTSQFMKKILYLIGIAGLLSTTGCLVSDGGGHGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR*
Ga0182016_1000021735	3300014493	Bog	MKKILLITGMLALLSTTGCIFPEGGGRGHARYERHDAVVVGPPAVVVRPPEVIVR*
Ga0182017_100056686	3300014494	Fen	MKKILLFACVITLLTTTGCLVSEGGRGEHARYEHHDQVVVGPPAVVVRVPEVVVRPPEVIVR*
Ga0182017_109741771	3300014494	Fen	MKKILFLTGIISLLTTTGCLVSEGGGHGHARYEHHDAIIVGPPPVIVRAPEVVVRPPEIIVR*
Ga0182015_103470342	3300014495	Palsa	MKKILYLTGMVLLLSTTGCIFPGDGRDGHARYEHSDDMFVGPAAVEVPGPAVVVRPPEVIVR*
Ga0182019_108307901	3300014498	Fen	MKKILYLTGIATLLSTTGCIFPGGDRGRHARYEHHDDVIVGPPAVVVHVPEVIVRPPEVIVR*
Ga0182019_113082762	3300014498	Fen	MKKILLLIAFAGLLSTTGCLVSDGGRGERGHARYEHHDEIRAGPPVVEMRAPEVVVRPPEVIVR*
Ga0181525_104560772	3300014654	Bog	SFRPSPNVFPESNMSQIMKRILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVVVGPPAVEVRVPEVVVRPPEVIVR*
Ga0181522_101463162	3300014657	Bog	MKKILFLTGMLGLLFTTGCIFPEGGGHGHARYEHHDAVVVGPPAVVVRVPELVVRPPEVIVR*
Ga0182027_100300792	3300014839	Fen	MKKILFLTGIISLLTTTGCIFPRGERHDEHARYEHHDDVIVGSPAVVVRAPEVVVRPPEIIVR*
Ga0182027_100643212	3300014839	Fen	MKMILLFACVVTLLTTTGCLVSEGGRGEHARYEHHDEVLVGPPVVAVRVPEVVVRPPEVIVR*
Ga0182027_100839624	3300014839	Fen	MKKILCLTGIIALLSTTGCIFPGGDRGGHARYEHHDEARVVSPVVVVHAPEVIVRPPEVIVR*
Ga0182027_102439962	3300014839	Fen	MKRILFLTGIISLLTTTGCIFPEGGERGHARYEHHDDVIVGPPAVVVRVPEVVVRPPEVIVR*
Ga0182027_102527543	3300014839	Fen	MKRILLLTGIISLLTTTGCIFPEGGGHEHARYENHPEVMAGPPSVEVRAPEVVVRPPEVIVR*
Ga0182027_104215552	3300014839	Fen	MKRILFLTGIISLLTTAGCIFPEGGGREHARYERHPEVMVGPPPVVVRAPEVVVRPPEVIVR*
Ga0182027_107822392	3300014839	Fen	MKKILYLIGIAGLLSTTGCLVSDGGRGGHARYEHHDAVIVGPPVMVVRPPEVVVRPPEVIVR*
Ga0182027_113950601	3300014839	Fen	MKKLLFLTGIISLLTTTGCIFPEGGGREHARYEHHDAVIVGPPPVVVRAPEIIVRPPEVIVR*
Ga0182027_114706301	3300014839	Fen	MKKILYLIAIAGLLSTTGCLVSDGGGHGHARYEHHDAVIVGPPAVVVRVPEVVVRPPEVIVR*
Ga0187812_11306011	3300017821	Freshwater Sediment	MKKILYLTGIVTLLSTSGCIFPEGDRGGHEHARYEHHDNVVVGPPVVVVRTPEVIVR
Ga0187820_10611781	3300017924	Freshwater Sediment	SGKLRVTPYREVPAWRVTSLDMKKILYLTGIVILLSTSGCIFPEGDRGGHEHARYEHHDDVVVGPPVVVVRAPELVVRPPEVIVR
Ga0187821_104148041	3300017936	Freshwater Sediment	MKKILYLTGIAALISTSGCIFPEGDRGGHEHARYEHHDDVVVGPPVVVVRTPELVVRPPEVIVR
Ga0187847_102803322	3300017948	Peatland	MKKILFLTGMLGLLFTTGCIFPEGGGHGHARYEHHDAVVVGPPAVVVRVPELVVRPPEVIVR
Ga0187847_104063341	3300017948	Peatland	MKKFLFLAGMISLVSTTGCIFPEGGRGGHARYEHHDEAVVGPPALVVRAPEVVVRPPEVIVR
Ga0181520_100138647	3300017988	Bog	MKKILYLTGIATLLSTTGCIFPGGDRGGHARYEHHDAVVVGPPVVEVRAPEVVVRPPEVIVR
Ga0181520_100244932	3300017988	Bog	MKNILLIIAFASLLSTTGCLVSDGGRGEHARYEHHDAVIVGPPVVEVRAPELDVRPPEVIVR
Ga0181520_100438343	3300017988	Bog	MNKILHLIAIATLLSTAGCIFPEGDRGGHARYEHHDDVVVGPPVVVVRAPELVVRPPEVIVR
Ga0181520_101274361	3300017988	Bog	IYPIVKTLPWRNITDMKKILYLGAIATLLSTTGCIVADGGGRHGEYGRHDAVVVGPPVVVVAAPAVVVRQPEVIVR
Ga0181520_105942671	3300017988	Bog	MKKILYLIGIAGLLSTTGCLVSDGGGHGHARYEHHDAVIVGPPAVVVRVPEVVVRPPEVIVR
Ga0187816_104025931	3300017995	Freshwater Sediment	RIPRKGGRLRVTPDREISTHRVTSQDMKKILLFTFFISLLTTTGCIFPEGGGREHARYEHHDDVVVGPPVVVVRTPELVVRPPEVIVR
Ga0187870_10724102	3300017998	Peatland	MKKILLFTGIVTFLSTTGCIFPGGERGGHGHARYERHDEVIVGPPVMVVRPPEVVVRPPEVIVR
Ga0187886_11006232	3300018018	Peatland	MKKILLFTGIVTFLSTTGCIFPGDERGGHGHARYERHDEVIVGPPVMVVRPPEVVVRPPEVIVR
Ga0187867_106854401	3300018033	Peatland	MKRILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0187863_100593422	3300018034	Peatland	MNQIIKRILFLTGMVSLLSATGCIFPEGGRREHAGYEHHDAVIVGPPAVVVRVPEVVLRPPEVIVR
Ga0187863_100778672	3300018034	Peatland	MKKILFLAGMISLVSTTGCIFPEGGRGGHARYEHHDEAVVGPPALVVRAPEVVVRPPEVIVR
Ga0187863_103218191	3300018034	Peatland	MGSHSFVLQRVTPHGKVPAQRVTSPDMKKILYLTGIVALLSTTGCIFPEGERGGHARYEHHDDVIVGPPAVVVSAPEVVVRPPEVIVR
Ga0187883_102270762	3300018037	Peatland	MSQIMKRILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0187859_101894523	3300018047	Peatland	MKKIIYLAGMAALLSTSGCLVAGGGRGGHAGYDHHDAVVVGPPVVVVRAPVMVVRPPEVIVR
Ga0187859_107855191	3300018047	Peatland	MKKILYLTGMVLLLSTTGCIFPGDGRDGHARYEHSDDMFVGPAAVEVPGPAVVVRPPEVIVR
Ga0210388_105654822	3300021181	Soil	MKKILYLTGVSILLFTGGCIFPEGGRGGHARYEHHDAVVVGPPVMVVRPPEVVVRPPEVIVR
Ga0210387_100760483	3300021405	Soil	MKKILLLASIVSILSATGCIVPGGDRHDHARYEHRDEVIVGPPPVVVRPPEVIVRPPEVIVR
Ga0210394_109286402	3300021420	Soil	MNHIMKKILFLAGIVSLLSTTGCIFPEGGRGGRARYEHHDAVVVGPPAVVVRAPEVVLRPPEVIVR
Ga0210391_104220481	3300021433	Soil	MKKILFLASIISLVSATGCIVPCGDRHDHARYEHHDEVIVGPPPIVVRPPEVIVRPPEVIVR
Ga0224534_10004614	3300022524	Soil	MKKIMFLTGIVTLLSTTGCIFPGGERGGHEHARYEHHDDVIVGPPAVVVRVPEVVVRPPEVIVR
Ga0224534_10074312	3300022524	Soil	MKIPDRRVTSQFMKKILYLIGIAGLLSTTGCLVSDGGGHGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0224533_10014812	3300022526	Soil	MKKILFLTGIISLLTTTGCIFPEGGGREHARYEHHDAIIVGPPAVEVRAPEVVVRPPEVIVR
Ga0224555_10257842	3300023088	Soil	MKKILYLMGIVTLLSTTGCIFPGGGGREHARYDHHDDVVVGPPAVVVRAPVLVVQPPEVIVR
Ga0224559_12917921	3300023091	Soil	MAALTIKQIYTTQSTMKKILLFAGLMSLLSTTGCIVADGGRHEHARYERHDDVIVAPPVVVVHPPELIVRPPEVIVR
Ga0208480_10254053	3300025633	Arctic Peat Soil	MKKILYLMGIVTLLSTTGCIFPGGGGGRGHEHARYEHHDDVIVGPPVLVVRPPEVIVR
Ga0209483_100087124	3300025862	Arctic Peat Soil	MKKILLLTGVTTLLSTTGCIVPEGGPREHARFEHHDEVVVEPRAVIVAPPVVVVRPPEVIVR
Ga0209483_100169817	3300025862	Arctic Peat Soil	MLPDMKKILYLTGIVTLLTTSGCIVPEGGRHEHARRYEHHDAVIVRPPAVVVHTPEVVVRPPEVIVR
Ga0209429_101749031	3300025864	Arctic Peat Soil	MKKILLISGIISLLATTGCLVSEGGRHGHARYEHHDAVIVGPPVVEVRVPVVEVRPPAVIVH
Ga0209517_1001233310	3300027854	Peatlands Soil	MKKILYLTSIAALLSTTGCIFPEGDRGGHEHARYEHHDDVVVGPPVVVVRAPALVVRPPEVIVR
Ga0209579_1000447811	3300027869	Surface Soil	MNQIMKKFLFLTGIVSLLSTTGCIFPEGGRGGRARYEHHDAVVVGPPAVVVRAPEVVLRPPEVIVR
Ga0265337_10229922	3300028556	Rhizosphere	MEIPARGVASQDMKKILHLIAIATLLSTTGCLVSDGGRGGHARYEHHDAVIVGPPAVVVRAPVMVVRPPEVIVR
Ga0265337_10264022	3300028556	Rhizosphere	MKMILLVTCVISLLSTTGCLVSDGGRGGHARYEHHDEVLVGPPVVVVRAPVIAVRPPEVIVR
Ga0265337_10492342	3300028556	Rhizosphere	MKRILLLTGMVSLLTATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRVPEVVVRPPEVIVR
Ga0265337_12320841	3300028556	Rhizosphere	MKKILLISGIVSLLATTGCLVSEGGRHGHARYEHRDEVIIGPPAVEVRAPVLEVRPPELIVH
Ga0265326_100593003	3300028558	Rhizosphere	MNKILFSAGIVTLLSTTGCLVSDGGRGGHGHARYERHDAVIVGPPVVVVRPPELVVRPPEVIVR
Ga0265319_10065085	3300028563	Rhizosphere	VTPESDVNHIMKRILLLTGMVSLLTATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRVPEVVVRPPEVIVR
Ga0265319_10649602	3300028563	Rhizosphere	MNPIMKKILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRAPEVIVR
Ga0265334_101046642	3300028573	Rhizosphere	MKRILLLTGMVSLLTATGCIFPEGGRGRHARYEHHDAVIVGPPAVEVRVPEVVVRPPEVIVR
Ga0265318_102244002	3300028577	Rhizosphere	MKKILLLTGMVSLLSATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRAPEVIVR
Ga0265323_100787451	3300028653	Rhizosphere	MKKFLYLIAIASLLSTTGCLVSDGGRGGHARYEHHDAVIVGPPVMVVRPPEVVVRPPEVIVR
Ga0265336_101748162	3300028666	Rhizosphere	RVTSQDMKKILFSAGIVILLSTTGCLVSDGGRGGHGHARYERHDAVIVGPPVVVVRPPELVVRPPEVIVR
Ga0265338_100043977	3300028800	Rhizosphere	MKKILFLTGLLALLPTTGCIFPEGGGRGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0265338_102049772	3300028800	Rhizosphere	MKMILFLACAITLLTTTGCLVSDGGRGGHATYEHHDAVIVGPPVVVVRAPVIVARPPEVIVR
Ga0265338_105669233	3300028800	Rhizosphere	MEIPAHRVASQDMKKILHLIAIATLLSTTGCLVSDGGRGGHARYEHHDNVIVGPPVVVVHPPELVVRPPEVI
Ga0302200_101984602	3300028909	Bog	MKKILLITGMLALLSTTGCIFPEGGGRGHARYERHDAVVVGPPAVVVRPPEVIVR
Ga0311363_109936942	3300029922	Fen	MKKILCAFGIVSLLSTTGCIVPGGDRGGPEHARYEHRDEVVVGPPVLVVRPPEVIVR
Ga0265324_102030472	3300029957	Rhizosphere	MKRILLLTGMVSLLTATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRVPEVVVRPPEVI
Ga0311370_115414351	3300030503	Palsa	MKKILFLAGLISILSSTGCIMHGGDRRDHAGYQHHDEVIVGPPAVVVRPPEVIVR
Ga0265777_1156782	3300030877	Soil	MKMILLFICFVILLTTTGCIIPEGGRGGHARYEHHDEVVVGPPAVILPVPEVIVR
Ga0302323_1024527293	3300031232	Fen	KLNILPIYYIIMKLILPLICIMTLLVTSGCLVAEGGRHEHGRYGHHDNVIVGPPVVEVHVPTVEVRPPVIIVH
Ga0265320_105309851	3300031240	Rhizosphere	SGPPPNVTPENDMNPIMKKILLLTGMVSLLFATGCIFPEGGRGGHARYEHHDAVIVGPPAVEVRAPEVIVR
Ga0265327_100508481	3300031251	Rhizosphere	MKMILLVTGVVTLLMTTGCLVPGGGPRGHARGHERYEYPEAVIVGPPVVEVRPPVVEVRPPAVIVR
Ga0265327_104359222	3300031251	Rhizosphere	LKMKKVLLFASVITLLATAGCIFPEGGRGERGGHARYEHHDEVIVGPPAVVVRAPEVVVRPPELIVR
Ga0265316_101277974	3300031344	Rhizosphere	MNRILFLAGIVTLLGSAGCIVPEGGHRGYARHEEHFDGPPAVVVRAPEVVVRPPEVIVR
Ga0265316_106860991	3300031344	Rhizosphere	MKRILFLAGIVTLLASAGCIVPEGGRRGYARHEDHFEGPPAVVVHAPELVVRPPEVIVR
Ga0265316_109020902	3300031344	Rhizosphere	KTILYLIAIAGLLSTTGCLVSDGGRGGHARYERHDAVIVGPPVVEVRAPEVVVRPPEVIV
Ga0265316_112588311	3300031344	Rhizosphere	MRYKLNMKKTLFLTGIISLLTTTGCIFPEGGGRGHARYEHHDDVIVGPPAVEVRAPEVVVRPPEVIVR
Ga0302320_103581302	3300031524	Bog	MNRILLLTGLCSLLSTTGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0302320_106431652	3300031524	Bog	MKKILYLTGIATLLSTTGCIFPGGDRGGHARYEHHDAAVVGPPVVEVRAPELVVRPPEVIVR
Ga0307374_105218012	3300031670	Soil	MSLAMKKILYLTGIVTLLSTTGCIFPGGEGRGHEHARYEHHDDVIVGPPALVVRPPEVIV
Ga0302319_107182752	3300031788	Bog	MKRILLLTGLCSLLSTTGCIFPEGGRGGHARYEHHDAVVVGPPAVVVRVPEVVVRPPEVIVR
Ga0302322_1004480271	3300031902	Fen	NKIINMKVLLFFPCVIALLATTGCIVADGGRHGHARYERRDEVIVGPPVLVVRPPEVVVRPPEIIVR
Ga0334840_180121_53_226	3300033824	Soil	MKKFLYLTGIVTLLSTTGCIVADGDRGGHEHARYEHHDAVVVGPPALVVRPPEVIVR
Ga0370483_0256866_401_589	3300034124	Untreated Peat Soil	MRKIIYLAGMAALFSTSGCIVADGGHGGHAGYDHHDVMVVGPPVVVVRAPVMVVRPPEVIVR
Ga0370492_0132436_289_477	3300034282	Untreated Peat Soil	MKKIICLAGVAALLSTSGCIVADGGHGGHAGYDHRDAVVVGPPVVVVRAPVMVVRPPEVIVR
Ga0370492_0206268_438_632	3300034282	Untreated Peat Soil	MKKILSATCVLTLLSTTGCIFPGGRDGGRDHARFEHHDDAVVGPPVVVVRPPVLEVRPPEVEVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073473

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences