Metagenome Family F073427

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073427
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	39 residues
Representative Sequence	PAMKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Number of Associated Samples	62
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.83 %
% of genes near scaffold ends (potentially truncated)	52.50 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.167 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean (53.333 % of family members)
Environment Ontology (ENVO)	Unclassified (97.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.87% β-sheet: 14.93% Coil/Unstructured: 58.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF03592	Terminase_2	6.67
PF10518	TAT_signal	5.00
PF02195	ParBc	1.67

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	6.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
All Organisms	root	All Organisms	30.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Viruses	superkingdom	All Organisms → Viruses	30.00 %
cellular organisms	root	All Organisms → cellular organisms	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	30.00 %
Staphylococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2236876008\|none_p333509	Not Available	526	Open in IMG/M
3300002511\|JGI25131J35506_1042495	Not Available	629	Open in IMG/M
3300002511\|JGI25131J35506_1045345	Not Available	609	Open in IMG/M
3300002760\|JGI25136J39404_1027555	Not Available	1037	Open in IMG/M
3300002760\|JGI25136J39404_1092209	Not Available	569	Open in IMG/M
3300002760\|JGI25136J39404_1092260	Not Available	569	Open in IMG/M
3300006736\|Ga0098033_1083856	Not Available	914	Open in IMG/M
3300006736\|Ga0098033_1095556	Not Available	847	Open in IMG/M
3300006738\|Ga0098035_1285534	Not Available	539	Open in IMG/M
3300006750\|Ga0098058_1026411	All Organisms → Viruses → Predicted Viral	1691	Open in IMG/M
3300006753\|Ga0098039_1060635	All Organisms → Viruses → Predicted Viral	1317	Open in IMG/M
3300006753\|Ga0098039_1152939	Not Available	788	Open in IMG/M
3300006753\|Ga0098039_1274031	Not Available	565	Open in IMG/M
3300006789\|Ga0098054_1330066	Not Available	543	Open in IMG/M
3300006926\|Ga0098057_1076775	Not Available	814	Open in IMG/M
3300006926\|Ga0098057_1188192	Not Available	504	Open in IMG/M
3300006927\|Ga0098034_1085145	Not Available	911	Open in IMG/M
3300006927\|Ga0098034_1142653	Not Available	677	Open in IMG/M
3300008050\|Ga0098052_1400276	Not Available	510	Open in IMG/M
3300008216\|Ga0114898_1017938	All Organisms → Viruses → Predicted Viral	2515	Open in IMG/M
3300008216\|Ga0114898_1042338	All Organisms → Viruses → Predicted Viral	1479	Open in IMG/M
3300008216\|Ga0114898_1065876	Not Available	1126	Open in IMG/M
3300008216\|Ga0114898_1068064	Not Available	1104	Open in IMG/M
3300008216\|Ga0114898_1142904	Not Available	692	Open in IMG/M
3300008216\|Ga0114898_1173099	Not Available	612	Open in IMG/M
3300008216\|Ga0114898_1174448	Not Available	609	Open in IMG/M
3300008217\|Ga0114899_1022935	All Organisms → Viruses → Predicted Viral	2398	Open in IMG/M
3300008217\|Ga0114899_1033288	All Organisms → Viruses → Predicted Viral	1912	Open in IMG/M
3300008217\|Ga0114899_1040024	All Organisms → Viruses → Predicted Viral	1712	Open in IMG/M
3300008217\|Ga0114899_1126691	Not Available	844	Open in IMG/M
3300008217\|Ga0114899_1244486	Not Available	554	Open in IMG/M
3300008218\|Ga0114904_1055475	Not Available	1026	Open in IMG/M
3300008219\|Ga0114905_1032740	All Organisms → Viruses → Predicted Viral	1983	Open in IMG/M
3300008219\|Ga0114905_1055161	All Organisms → Viruses → Predicted Viral	1451	Open in IMG/M
3300008219\|Ga0114905_1095945	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
3300008219\|Ga0114905_1145444	Not Available	793	Open in IMG/M
3300008220\|Ga0114910_1084315	Not Available	965	Open in IMG/M
3300009412\|Ga0114903_1019342	Not Available	1778	Open in IMG/M
3300009412\|Ga0114903_1091947	Not Available	677	Open in IMG/M
3300009413\|Ga0114902_1160001	Not Available	565	Open in IMG/M
3300009414\|Ga0114909_1071674	Not Available	986	Open in IMG/M
3300009414\|Ga0114909_1085001	Not Available	884	Open in IMG/M
3300009414\|Ga0114909_1113465	Not Available	735	Open in IMG/M
3300009414\|Ga0114909_1199400	Not Available	509	Open in IMG/M
3300009418\|Ga0114908_1153266	Not Available	738	Open in IMG/M
3300009595\|Ga0105214_123623	Not Available	515	Open in IMG/M
3300009602\|Ga0114900_1044957	All Organisms → Viruses → Predicted Viral	1386	Open in IMG/M
3300009603\|Ga0114911_1017785	All Organisms → Viruses → Predicted Viral	2428	Open in IMG/M
3300009603\|Ga0114911_1095696	Not Available	870	Open in IMG/M
3300009604\|Ga0114901_1142058	Not Available	725	Open in IMG/M
3300009604\|Ga0114901_1210580	Not Available	559	Open in IMG/M
3300009605\|Ga0114906_1046566	All Organisms → Viruses → Predicted Viral	1667	Open in IMG/M
3300009605\|Ga0114906_1097579	Not Available	1059	Open in IMG/M
3300009605\|Ga0114906_1246649	Not Available	583	Open in IMG/M
3300009611\|Ga0105229_115750	Not Available	550	Open in IMG/M
3300009620\|Ga0114912_1015088	All Organisms → Viruses → Predicted Viral	2281	Open in IMG/M
3300009620\|Ga0114912_1060842	Not Available	946	Open in IMG/M
3300010149\|Ga0098049_1207767	Not Available	599	Open in IMG/M
3300010153\|Ga0098059_1233599	Not Available	711	Open in IMG/M
3300010153\|Ga0098059_1334659	Not Available	576	Open in IMG/M
3300010155\|Ga0098047_10100095	All Organisms → Viruses → Predicted Viral	1131	Open in IMG/M
3300010155\|Ga0098047_10115131	All Organisms → Viruses → Predicted Viral	1046	Open in IMG/M
3300010932\|Ga0137843_1140942	Not Available	517	Open in IMG/M
3300017702\|Ga0181374_1068152	Not Available	598	Open in IMG/M
3300017715\|Ga0181370_1029881	Not Available	708	Open in IMG/M
3300017718\|Ga0181375_1072763	Not Available	561	Open in IMG/M
3300017775\|Ga0181432_1021474	Not Available	1673	Open in IMG/M
3300017775\|Ga0181432_1105951	Not Available	841	Open in IMG/M
3300017775\|Ga0181432_1139164	Not Available	741	Open in IMG/M
3300017775\|Ga0181432_1159882	Not Available	695	Open in IMG/M
3300017775\|Ga0181432_1300040	Not Available	510	Open in IMG/M
3300020458\|Ga0211697_10359358	Not Available	605	Open in IMG/M
3300021442\|Ga0206685_10165766	Not Available	740	Open in IMG/M
3300021977\|Ga0232639_1366808	Not Available	555	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10515781	Not Available	578	Open in IMG/M
3300025046\|Ga0207902_1049191	Not Available	527	Open in IMG/M
3300025069\|Ga0207887_1085523	Not Available	512	Open in IMG/M
3300025103\|Ga0208013_1020655	All Organisms → Viruses → Predicted Viral	1961	Open in IMG/M
3300025112\|Ga0209349_1048057	All Organisms → Viruses → Predicted Viral	1346	Open in IMG/M
3300025125\|Ga0209644_1013913	All Organisms → Viruses → Predicted Viral	1704	Open in IMG/M
3300025125\|Ga0209644_1066944	Not Available	834	Open in IMG/M
3300025128\|Ga0208919_1041952	All Organisms → Viruses → Predicted Viral	1603	Open in IMG/M
3300025133\|Ga0208299_1028800	All Organisms → Viruses → Predicted Viral	2338	Open in IMG/M
3300025133\|Ga0208299_1190886	Not Available	614	Open in IMG/M
3300025251\|Ga0208182_1026229	All Organisms → Viruses → Predicted Viral	1378	Open in IMG/M
3300025251\|Ga0208182_1028755	All Organisms → Viruses → Predicted Viral	1288	Open in IMG/M
3300025251\|Ga0208182_1039531	All Organisms → Viruses → Predicted Viral	1028	Open in IMG/M
3300025251\|Ga0208182_1041498	Not Available	994	Open in IMG/M
3300025251\|Ga0208182_1075893	Not Available	641	Open in IMG/M
3300025264\|Ga0208029_1016694	All Organisms → Viruses → Predicted Viral	1902	Open in IMG/M
3300025264\|Ga0208029_1030428	All Organisms → Viruses → Predicted Viral	1258	Open in IMG/M
3300025264\|Ga0208029_1043099	Not Available	981	Open in IMG/M
3300025267\|Ga0208179_1023819	All Organisms → Viruses → Predicted Viral	1629	Open in IMG/M
3300025267\|Ga0208179_1026703	All Organisms → Viruses → Predicted Viral	1499	Open in IMG/M
3300025267\|Ga0208179_1064583	Not Available	787	Open in IMG/M
3300025267\|Ga0208179_1084092	Not Available	651	Open in IMG/M
3300025274\|Ga0208183_1033800	All Organisms → Viruses → Predicted Viral	1087	Open in IMG/M
3300025277\|Ga0208180_1010703	All Organisms → Viruses → Predicted Viral	3032	Open in IMG/M
3300025277\|Ga0208180_1030263	All Organisms → Viruses → Predicted Viral	1534	Open in IMG/M
3300025277\|Ga0208180_1058982	Not Available	957	Open in IMG/M
3300025277\|Ga0208180_1106385	Not Available	616	Open in IMG/M
3300025280\|Ga0208449_1019555	All Organisms → Viruses → Predicted Viral	2157	Open in IMG/M
3300025280\|Ga0208449_1039369	Not Available	1331	Open in IMG/M
3300025286\|Ga0208315_1017275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae	2328	Open in IMG/M
3300025293\|Ga0208934_1052738	Not Available	738	Open in IMG/M
3300025293\|Ga0208934_1068285	Not Available	627	Open in IMG/M
3300025296\|Ga0208316_1027919	All Organisms → Viruses → Predicted Viral	1351	Open in IMG/M
3300025301\|Ga0208450_1052395	All Organisms → Viruses → Predicted Viral	1000	Open in IMG/M
3300025301\|Ga0208450_1093582	Not Available	666	Open in IMG/M
3300025305\|Ga0208684_1022556	All Organisms → Viruses → Predicted Viral	1959	Open in IMG/M
3300025305\|Ga0208684_1035698	Not Available	1442	Open in IMG/M
3300025305\|Ga0208684_1048250	Not Available	1181	Open in IMG/M
3300025873\|Ga0209757_10075091	All Organisms → Viruses → Predicted Viral	1016	Open in IMG/M
3300025873\|Ga0209757_10131444	Not Available	778	Open in IMG/M
3300025873\|Ga0209757_10202899	Not Available	628	Open in IMG/M
3300028039\|Ga0256380_1038625	Not Available	749	Open in IMG/M
3300028039\|Ga0256380_1049872	Not Available	637	Open in IMG/M
3300032278\|Ga0310345_11194868	Not Available	744	Open in IMG/M
3300034629\|Ga0326756_042917	Not Available	556	Open in IMG/M
3300034656\|Ga0326748_042303	Not Available	637	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.17%
Unclassified	Environmental → Aquatic → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	87.50%
Strait	Environmental → Aquatic → Marine → Strait	4.17%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.50%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.67%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.67%
Inlet	Environmental → Aquatic → Marine → Inlet	0.83%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.83%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	87.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.17%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.83%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.83%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	53.33%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	31.67%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.17%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	1.67%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	1.67%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.67%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.83%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.83%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.83%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine	0.83%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.83%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.83%
Subsea Pool	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2236876008	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200	Environmental	Open in IMG/M
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009412	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009595	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009611	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435	Environmental	Open in IMG/M
3300009620	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300010932	Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1	Environmental	Open in IMG/M
3300017702	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG	Environmental	Open in IMG/M
3300017715	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG	Environmental	Open in IMG/M
3300017718	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020458	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021977	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300025046	Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025251	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)	Environmental	Open in IMG/M
3300025264	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)	Environmental	Open in IMG/M
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental	Open in IMG/M
3300025274	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025280	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300025293	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)	Environmental	Open in IMG/M
3300025296	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300025305	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300028039	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300034629	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600	Environmental	Open in IMG/M
3300034656	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
none_3335093	2236876008	Marine Estuarine	MPAMKVKGGWKWGKTGTVRKTRTAAIQDGIAMRMNQKKNRKA
JGI25131J35506_10424952	3300002511	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIDQGIAIRMNQKKNRKV*
JGI25131J35506_10453452	3300002511	Marine	MPAMKVKGGWKWGRTGKVFKTRQEAIQQGIAIRMNQKKNRKV*
JGI25136J39404_10275554	3300002760	Marine	MPAMKVKGGWRWGRTGKVFKTRQEAIDQGIAIRMNQKKNRKV*
JGI25136J39404_10922092	3300002760	Marine	MPAMKVKGGWRWGKTGKVFKTRQEAIQQGIAIRMSKRKKQ*
JGI25136J39404_10922601	3300002760	Marine	DALRPLLMPAMKVKGGWRWGKTGKVFKTRQEAIQQGIAIRMSKRKKQ*
Ga0098033_10838562	3300006736	Marine	GGWRWGTKGKVYKTRQEAIQQGIAIRMNKKNRKV*
Ga0098033_10955561	3300006736	Marine	MPAMKVKGGWKWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0098035_12855341	3300006738	Marine	MPAMKVKGGWRWGKTGKVFKTRREAIQQGVAIRMNKKR
Ga0098058_10264113	3300006750	Marine	MPAMKVKGGWKWGKTGKVYKTRQEAIQQGIRMNKKRKG*
Ga0098039_10606351	3300006753	Marine	KGGWRWGKTGKVYKTRQEAIQQGIAIRMNKKKNRKA*
Ga0098039_11529391	3300006753	Marine	MKVKGGWRWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0098039_12740311	3300006753	Marine	MKVKGGWRWGKTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0098054_13300662	3300006789	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKG*
Ga0098057_10767752	3300006926	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIQQGTRMNKKRKG*
Ga0098057_11881922	3300006926	Marine	MPAMKVKGGWRWGKTGKVFKTRQEAIQQGIAIRMNKKRKG*
Ga0098034_10851453	3300006927	Marine	MPAMKVKGGWRWGKTGKVYKTRQEAIQQGIRMNKKR
Ga0098034_11426531	3300006927	Marine	VKGGWRWGKTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0098052_14002761	3300008050	Marine	KGGWRWGKTGKVFKTRQEAIQQGIAIRMNQKKRKA*
Ga0114898_10179382	3300008216	Deep Ocean	MPAMKVKGGWRWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0114898_10423381	3300008216	Deep Ocean	PAVKVKGGWRWGRTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114898_10658761	3300008216	Deep Ocean	PAMKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114898_10680641	3300008216	Deep Ocean	GLRPLLMPAMKVKGGWKWGRTGKVFKTRQEAIQQGIAIRMNQKKNRKA*
Ga0114898_11429041	3300008216	Deep Ocean	MKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKKRKA*
Ga0114898_11730992	3300008216	Deep Ocean	MKVKGGWKWGRTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114898_11744481	3300008216	Deep Ocean	MKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG*
Ga0114899_10229353	3300008217	Deep Ocean	MPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMKRKKG*
Ga0114899_10332882	3300008217	Deep Ocean	MKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKT*
Ga0114899_10400241	3300008217	Deep Ocean	RMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG*
Ga0114899_11266912	3300008217	Deep Ocean	MPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG
Ga0114899_12444861	3300008217	Deep Ocean	AMKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKKRKA*
Ga0114904_10554752	3300008218	Deep Ocean	MPAMKVKGGWKWGKTGKVYKTRTAAIQDGLAIRMDKKRKG*
Ga0114905_10327402	3300008219	Deep Ocean	MKVKGGWKWGKTGKVYKTRQEAIQQGVAIRMNKKRKG*
Ga0114905_10551612	3300008219	Deep Ocean	MKVKGGWRWGRTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114905_10959451	3300008219	Deep Ocean	MPVMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKG*
Ga0114905_11454442	3300008219	Deep Ocean	VKGGWKWGKTGKVYKTRQEAIQQGIAIRMDKKRKG*
Ga0114910_10843152	3300008220	Deep Ocean	KVKGGWKWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0114903_10193421	3300009412	Deep Ocean	MKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNRKRKG*
Ga0114903_10919472	3300009412	Deep Ocean	AIPSQRTRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMKRKKG*
Ga0114902_11600012	3300009413	Deep Ocean	LLMPAMKVKGGWRWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0114909_10716741	3300009414	Deep Ocean	KVKGGWKWGKTGKVYKTRTAAIQDGLAIRMDKKRKG*
Ga0114909_10850012	3300009414	Deep Ocean	VKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114909_11134652	3300009414	Deep Ocean	VKGGWKWGKTGKVYKTRQKAIQQGIAIRMNKKRKG*
Ga0114909_11994002	3300009414	Deep Ocean	VIKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG*
Ga0114908_11532662	3300009418	Deep Ocean	PVIKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNRKRKG*
Ga0105214_1236231	3300009595	Marine Oceanic	AIPSQRTRMPAMKVKGGWKWGKTGKVRKTRQEAIQDGLDIRMKRKKG*
Ga0114900_10449574	3300009602	Deep Ocean	KGGWKWGKTGKVYKTRQEAIQQGIAIRMNRKRKG*
Ga0114911_10177852	3300009603	Deep Ocean	MPAMKVKGGWKWGKTGKVRKTRQEAIQDGLDIRMKRKKG*
Ga0114911_10956961	3300009603	Deep Ocean	KVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114901_11420582	3300009604	Deep Ocean	MKVKGGWKWGRTGKVFKTRQEAIQQGIAIRMNQKKNRKA*
Ga0114901_12105801	3300009604	Deep Ocean	MPAMKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG*
Ga0114906_10465663	3300009605	Deep Ocean	AIPSQRTRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG*
Ga0114906_10975791	3300009605	Deep Ocean	MPAMKVKGGWKWGRTGKVYKTRQEAIQQGIAIRMNKKRKG*
Ga0114906_12466492	3300009605	Deep Ocean	GWKWGRTGKVYKTRQEAIQQGLAIRMNQKKNRKV*
Ga0105229_1157501	3300009611	Marine Oceanic	MPAMKVKGGWRWGTKGKIHKTRRAAIQEGIAIRMKGNRKA*
Ga0114912_10150881	3300009620	Deep Ocean	KVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKGKG*
Ga0114912_10608421	3300009620	Deep Ocean	MPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRK
Ga0098049_12077672	3300010149	Marine	MPAMKVKGGWKWGKTGKVYKTRQKAIQQGVAIRMNKKRKG*
Ga0098059_12335991	3300010153	Marine	MPVTKVKGGWRWGKAGKVFKTRQEAIQQGIAIRMNKKRKG*
Ga0098059_13346591	3300010153	Marine	MPAMKVKGGWKWGKTGEVYKTRQEAIQQGIRMNKKRKG*
Ga0098047_101000952	3300010155	Marine	MPAMKVKGGWRWGRTGKVYKTRQEAIQQGIRMNKKRKG*
Ga0098047_101151311	3300010155	Marine	AMKVKGGWRWGKTGKVYKTRQEAIQQGTRMNKKRKG*
Ga0137843_11409421	3300010932	Subsea Pool	MPVEKVKGGWRWGKRGXVYKTRQEAIQQGVAIKMNQKKRKA*
Ga0181374_10681521	3300017702	Marine	MPAMKVKGGWKWGKTGKVYKTRQEAIQQGIRMNKKRKG
Ga0181370_10298812	3300017715	Marine	MPAMKVRGGWKWGKTGKVYKTRQEAIQQGIAIRMN
Ga0181375_10727632	3300017718	Marine	KGGWRWGKTGKVYKTRQEAIQQGIAIRMNQKKNRKA
Ga0181432_10214742	3300017775	Seawater	MPAMKVKGGWRWGKTGKVFKTRQEAIQQGIAIRMKKRKG
Ga0181432_11059512	3300017775	Seawater	MPAMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKA
Ga0181432_11391642	3300017775	Seawater	MPAEKVKGGWRWGKTGKVHKTRREAIQQGIAIRMSKRKKG
Ga0181432_11598821	3300017775	Seawater	GGWKWGKTGKVFKTRQEAIQQGIAIRMNQKKNRKV
Ga0181432_13000402	3300017775	Seawater	MPAEKVKGGWRWGKTGKVFKTRREAIKQGIAIRMNKKRKT
Ga0211697_103593581	3300020458	Marine	MPAMKVKGGWKWGKTGKVFKTRKEAIQQGIAIRMNKKRKS
Ga0206685_101657661	3300021442	Seawater	MPAMKVKGGWKWGKTGKVFKTRREAIQQGIAIRMNKKRKG
Ga0232639_13668081	3300021977	Hydrothermal Vent Fluids	MPATKVKGGWRWGTKGKIHKTRRAAIQEGIAIRMKGN
(restricted) Ga0255048_105157812	3300024518	Seawater	VRGGWRWGKTGKVHKTRKAAIDQGIAIRMNQKKNRKV
Ga0207902_10491912	3300025046	Marine	MPAMKVKGGWKWGKTGKVRKTRQKAIQDGIAIRMKKRKT
Ga0207887_10855231	3300025069	Marine	RMPAMKVKGGWKWGKTGTVRKTRQKAIQDGLAIRMNQKKNRKA
Ga0208013_10206552	3300025103	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKG
Ga0209349_10480572	3300025112	Marine	MPAMKVKGGWKWGKTGKVRKTRQEAIQDGLDIRMKRKKG
Ga0209644_10139131	3300025125	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIDQGIAIRMNQKKNRKV
Ga0209644_10669441	3300025125	Marine	MPAMKVKGGWKWGRTGKVFKTRQEAIQQGIAIRMNQKKNRKV
Ga0208919_10419522	3300025128	Marine	MKVKGGWRWGKTGKVYKTRQKAIQQGVAIRMNKKRKG
Ga0208299_10288003	3300025133	Marine	KGGWKWGKTGKVYKTRQEAIQQGIAIRMNQKKRKG
Ga0208299_11908862	3300025133	Marine	MPVMKVKGGWKWGKTGKVYKTRQEAIQQGTRMNKRK
Ga0208182_10262292	3300025251	Deep Ocean	MPAMKVKGGWRWGKTGKVYKTRQEAIQQGTRMNKKRKG
Ga0208182_10287551	3300025251	Deep Ocean	RTRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG
Ga0208182_10395311	3300025251	Deep Ocean	MPVMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKG
Ga0208182_10414981	3300025251	Deep Ocean	IKVKGGWKWGKTGKVYKTRTAAIQDGLAIRMDKKRKG
Ga0208182_10758931	3300025251	Deep Ocean	MKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208029_10166941	3300025264	Deep Ocean	MPAMKVKGGWKWGKTGKVYKTRTAAIQDGLAIRMDKKRKG
Ga0208029_10304281	3300025264	Deep Ocean	MPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMKRKKG
Ga0208029_10430991	3300025264	Deep Ocean	VKGGWKWGRTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208179_10238191	3300025267	Deep Ocean	LMPAMKVKGGWKWGRTGKVFKTRQEAIQQGIAIRMNQKKNRKA
Ga0208179_10267032	3300025267	Deep Ocean	MKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG
Ga0208179_10645832	3300025267	Deep Ocean	MPAMKVKGGWKWGRTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208179_10840922	3300025267	Deep Ocean	MPVMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNKKRKT
Ga0208183_10338002	3300025274	Deep Ocean	MPAMKVKGGWRWGKTGKVYKTRTAAIQQGIAIRMDKKRKG
Ga0208180_10107031	3300025277	Deep Ocean	SQRTRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMKRKKG
Ga0208180_10302632	3300025277	Deep Ocean	VKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208180_10589822	3300025277	Deep Ocean	IKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG
Ga0208180_11063851	3300025277	Deep Ocean	GNRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG
Ga0208449_10195552	3300025280	Deep Ocean	MPAMKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG
Ga0208449_10393693	3300025280	Deep Ocean	MPAMKVKGGWRWGKTGKVYKTRTAAIQDGLAIRMDKKRKG
Ga0208315_10172753	3300025286	Deep Ocean	KVKGGWRWGKTGKVYKTRQEAIQQGIAIRMDKKRKG
Ga0208934_10527381	3300025293	Deep Ocean	VKGGWKWGKTGKVYKTRQEAIQQGIAIRMNRKRKG
Ga0208934_10682851	3300025293	Deep Ocean	LRPLLMPAMKVKGGWKWGRTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208316_10279191	3300025296	Deep Ocean	MKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG
Ga0208450_10523952	3300025301	Deep Ocean	VKGGWRWGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208450_10935822	3300025301	Deep Ocean	AIPSQRTRMPAMKVKGGWKWGKTGKVRKTRQEAVQDGLDIRMNKRKG
Ga0208684_10225561	3300025305	Deep Ocean	PAMKVKGGWKWGRTGKVYKTRQEAIQQGVAIRMNKKRKG
Ga0208684_10356981	3300025305	Deep Ocean	KVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0208684_10482502	3300025305	Deep Ocean	MKVKGGWKGGKTGKVYKTRQEAIQQGIAIRMNKKRKG
Ga0209757_100750911	3300025873	Marine	MPAMKVKGGWKWGKTGKVFKTRQEAIQQGIAIRMNQKKNRKV
Ga0209757_101314442	3300025873	Marine	MPAMKVKGGWRWGKTGKVFKTRQEAIQQGIAIRMSKRKKQ
Ga0209757_102028991	3300025873	Marine	MPAMKVKGGWRWGKTGKVFKTRREAIQQGIAIRMNKRKKG
Ga0256380_10386252	3300028039	Seawater	MAAMKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNQKKNRKV
Ga0256380_10498721	3300028039	Seawater	MKVKGGWKWGKTGKVYKTRQEAIQQGIAIRMNKKRKT
Ga0310345_111948682	3300032278	Seawater	MPAMKVKGGWKWGKTGKVRKTRQEAIQDGLDIRMNKRKKG
Ga0326756_042917_34_153	3300034629	Filtered Seawater	MPAMKVKGGWKWGKTGTVRKTRQKAIQDGIAIRMKKRKT
Ga0326748_042303_1_123	3300034656	Filtered Seawater	MPAMKVKGGWRWGTKGKVHKTRRAAIQEGIAIRMKGNRKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters