Metagenome / Metatranscriptome Family F073399

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073399
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	62 residues
Representative Sequence	DTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQVR
Number of Associated Samples	71
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.67 %
% of genes near scaffold ends (potentially truncated)	40.83 %
% of genes from short scaffolds (< 2000 bps)	96.67 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (15.000 % of family members)
Environment Ontology (ENVO)	Unclassified (43.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.07% β-sheet: 38.60% Coil/Unstructured: 33.33%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF05239	PRC	10.00
PF07332	Phage_holin_3_6	5.83
PF04392	ABC_sub_bind	1.67
PF02371	Transposase_20	1.67
PF13817	DDE_Tnp_IS66_C	0.83
PF00126	HTH_1	0.83
PF13924	Lipocalin_5	0.83
PF05067	Mn_catalase	0.83
PF13358	DDE_3	0.83
PF13546	DDE_5	0.83
PF13551	HTH_29	0.83
PF09361	Phasin_2	0.83
PF02668	TauD	0.83
PF13565	HTH_32	0.83
PF01938	TRAM	0.83
PF00375	SDF	0.83
PF00571	CBS	0.83
PF06627	DUF1153	0.83
PF00873	ACR_tran	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.67
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.67
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG3546	Mn-containing catalase (includes spore coat protein CotJC)	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.67 %
Unclassified	root	N/A	48.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.67 %
Unclassified	root	N/A	48.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.67 %
Unclassified	root	N/A	48.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35.83 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	25.83 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	20.00 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.83 %
Paracoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Microvirga flocculans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	11.67 %
Methylobacterium isbiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	0.83 %
Microvirga lupini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	0.83 %
unclassified Paracoccus (in: a-proteobacteria)	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → unclassified Paracoccus (in: a-proteobacteria)	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.33 %
Microvirga flocculans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	11.67 %
Paracoccus sp. MC1862	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → unclassified Paracoccus (in: a-proteobacteria) → Paracoccus sp. MC1862	0.83 %
Methylobacterium isbiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	0.83 %
Microvirga lupini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10149576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	718	Open in IMG/M
3300002568\|C688J35102_118516803	Not Available	567	Open in IMG/M
3300002568\|C688J35102_118630779	Not Available	579	Open in IMG/M
3300004081\|Ga0063454_100471749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	871	Open in IMG/M
3300004153\|Ga0063455_101285915	Not Available	556	Open in IMG/M
3300004798\|Ga0058859_11746363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	693	Open in IMG/M
3300005334\|Ga0068869_101527631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	593	Open in IMG/M
3300005338\|Ga0068868_100211280	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300005338\|Ga0068868_100351806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300005338\|Ga0068868_100763504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	870	Open in IMG/M
3300005338\|Ga0068868_101012277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	761	Open in IMG/M
3300005366\|Ga0070659_100890124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	778	Open in IMG/M
3300005441\|Ga0070700_100552712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300005455\|Ga0070663_100824770	Not Available	797	Open in IMG/M
3300005455\|Ga0070663_101863673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	540	Open in IMG/M
3300005456\|Ga0070678_101257586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	688	Open in IMG/M
3300005456\|Ga0070678_102075184	Not Available	538	Open in IMG/M
3300005457\|Ga0070662_101227476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	645	Open in IMG/M
3300005535\|Ga0070684_100546474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300005535\|Ga0070684_101210787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	710	Open in IMG/M
3300005539\|Ga0068853_100786489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	911	Open in IMG/M
3300005549\|Ga0070704_100979641	Not Available	764	Open in IMG/M
3300005549\|Ga0070704_101522626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300005577\|Ga0068857_101215570	Not Available	730	Open in IMG/M
3300005578\|Ga0068854_100703928	Not Available	872	Open in IMG/M
3300005615\|Ga0070702_101593202	Not Available	540	Open in IMG/M
3300005719\|Ga0068861_101182983	Not Available	738	Open in IMG/M
3300006755\|Ga0079222_10781935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	775	Open in IMG/M
3300009098\|Ga0105245_10321612	Not Available	1524	Open in IMG/M
3300009098\|Ga0105245_11375200	Not Available	756	Open in IMG/M
3300009101\|Ga0105247_10070874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	2178	Open in IMG/M
3300009148\|Ga0105243_12301796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	576	Open in IMG/M
3300009156\|Ga0111538_12788353	Not Available	612	Open in IMG/M
3300009176\|Ga0105242_11421442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	722	Open in IMG/M
3300009176\|Ga0105242_12232452	Not Available	593	Open in IMG/M
3300009176\|Ga0105242_12834895	Not Available	535	Open in IMG/M
3300009553\|Ga0105249_11184071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
3300009553\|Ga0105249_11196788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	831	Open in IMG/M
3300009789\|Ga0126307_10932585	Not Available	701	Open in IMG/M
3300009840\|Ga0126313_10214906	Not Available	1481	Open in IMG/M
3300009840\|Ga0126313_11390770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300009840\|Ga0126313_11744628	Not Available	520	Open in IMG/M
3300010037\|Ga0126304_10729232	Not Available	670	Open in IMG/M
3300010037\|Ga0126304_10964108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	581	Open in IMG/M
3300010038\|Ga0126315_10664979	Not Available	677	Open in IMG/M
3300010039\|Ga0126309_10297547	Not Available	932	Open in IMG/M
3300010039\|Ga0126309_10507001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	743	Open in IMG/M
3300010040\|Ga0126308_10271359	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300010042\|Ga0126314_10492228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	890	Open in IMG/M
3300010044\|Ga0126310_10514000	Not Available	878	Open in IMG/M
3300010044\|Ga0126310_10794386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	727	Open in IMG/M
3300010045\|Ga0126311_10018148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4119	Open in IMG/M
3300010045\|Ga0126311_10340989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1139	Open in IMG/M
3300010045\|Ga0126311_10513606	Not Available	939	Open in IMG/M
3300010045\|Ga0126311_11546409	Not Available	557	Open in IMG/M
3300010166\|Ga0126306_10760492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	780	Open in IMG/M
3300010371\|Ga0134125_11541766	Not Available	723	Open in IMG/M
3300010371\|Ga0134125_12981825	Not Available	513	Open in IMG/M
3300010375\|Ga0105239_13645616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	500	Open in IMG/M
3300010399\|Ga0134127_11419490	Not Available	765	Open in IMG/M
3300010399\|Ga0134127_12852426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	563	Open in IMG/M
3300010400\|Ga0134122_11815226	Not Available	642	Open in IMG/M
3300011119\|Ga0105246_10590719	Not Available	958	Open in IMG/M
3300011119\|Ga0105246_12016569	Not Available	557	Open in IMG/M
3300012212\|Ga0150985_100102214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	582	Open in IMG/M
3300012212\|Ga0150985_102237958	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300012212\|Ga0150985_102688945	Not Available	764	Open in IMG/M
3300012212\|Ga0150985_106686665	Not Available	669	Open in IMG/M
3300012212\|Ga0150985_109445010	Not Available	937	Open in IMG/M
3300012212\|Ga0150985_110504842	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300012212\|Ga0150985_115117138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	543	Open in IMG/M
3300012212\|Ga0150985_116339532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	659	Open in IMG/M
3300012212\|Ga0150985_117204453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1809	Open in IMG/M
3300012212\|Ga0150985_120441964	Not Available	548	Open in IMG/M
3300012212\|Ga0150985_120607654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300012212\|Ga0150985_122447271	Not Available	597	Open in IMG/M
3300012389\|Ga0134040_1269229	Not Available	536	Open in IMG/M
3300012406\|Ga0134053_1299907	Not Available	566	Open in IMG/M
3300012469\|Ga0150984_100677750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	532	Open in IMG/M
3300012469\|Ga0150984_104637723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1116	Open in IMG/M
3300012469\|Ga0150984_105950222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	764	Open in IMG/M
3300012469\|Ga0150984_106971202	Not Available	630	Open in IMG/M
3300012469\|Ga0150984_109251380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300012469\|Ga0150984_110559548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	608	Open in IMG/M
3300012469\|Ga0150984_113354878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → unclassified Paracoccus (in: a-proteobacteria) → Paracoccus sp. MC1862	837	Open in IMG/M
3300012469\|Ga0150984_115321330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	597	Open in IMG/M
3300012469\|Ga0150984_116080615	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300012469\|Ga0150984_116411979	Not Available	597	Open in IMG/M
3300012469\|Ga0150984_119833204	Not Available	547	Open in IMG/M
3300012988\|Ga0164306_11791308	Not Available	533	Open in IMG/M
3300013296\|Ga0157374_12057029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	598	Open in IMG/M
3300013308\|Ga0157375_10207841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2114	Open in IMG/M
3300013308\|Ga0157375_13217524	Not Available	545	Open in IMG/M
3300014326\|Ga0157380_10641428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1058	Open in IMG/M
3300014745\|Ga0157377_10443533	Not Available	894	Open in IMG/M
3300014968\|Ga0157379_12348584	Not Available	532	Open in IMG/M
3300014968\|Ga0157379_12527781	Not Available	514	Open in IMG/M
3300015372\|Ga0132256_103047050	Not Available	563	Open in IMG/M
3300017792\|Ga0163161_11257982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300017792\|Ga0163161_11950180	Not Available	522	Open in IMG/M
3300019356\|Ga0173481_10570237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300025900\|Ga0207710_10412744	Not Available	694	Open in IMG/M
3300025925\|Ga0207650_10887922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga flocculans	757	Open in IMG/M
3300025933\|Ga0207706_10123299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2279	Open in IMG/M
3300025933\|Ga0207706_11382265	Not Available	579	Open in IMG/M
3300025936\|Ga0207670_10549014	Not Available	944	Open in IMG/M
3300025944\|Ga0207661_10635314	Not Available	981	Open in IMG/M
3300025961\|Ga0207712_10927395	Not Available	771	Open in IMG/M
3300025981\|Ga0207640_10653624	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300026023\|Ga0207677_10840983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	824	Open in IMG/M
3300026067\|Ga0207678_10634589	Not Available	938	Open in IMG/M
3300026089\|Ga0207648_10171090	Not Available	1920	Open in IMG/M
3300026089\|Ga0207648_11137577	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300026116\|Ga0207674_12014449	Not Available	542	Open in IMG/M
3300026118\|Ga0207675_100326036	Not Available	1500	Open in IMG/M
3300026142\|Ga0207698_10498685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1184	Open in IMG/M
3300027866\|Ga0209813_10376281	Not Available	567	Open in IMG/M
3300028380\|Ga0268265_12532371	Not Available	519	Open in IMG/M
3300028381\|Ga0268264_11155402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	783	Open in IMG/M
3300032126\|Ga0307415_102458398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	65.83%
Environmental	Environmental	34.17%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	65.00%
Terrestrial	Environmental → Terrestrial	34.17%
Human	Host-Associated → Human	0.83%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.83%
Soil	Environmental → Terrestrial → Soil	34.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	28.33%
Digestive System	Host-Associated → Human → Digestive System	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	10.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.00%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.67%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	10.00%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	9.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.33%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_101495761	3300001305	Soil	MRRARPFQPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVKQVR*
C688J35102_1185168032	3300002568	Soil	MRRARPFQPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPLVSVQQ
C688J35102_1186307792	3300002568	Soil	MRRARPFQPADTKVMYAVYYDDGRSAYIRVSPEAARYGHLVVISIAREQQKAGGIPDGTLIGVKQVR*
Ga0063454_1004717491	3300004081	Soil	MVSAGDTFRPRLRDTKVMFAVHYSDGRSAYIRVSPETARHGNLVVLDVARDRQGAGEIPDGPIVSVKQVR*
Ga0063455_1012859151	3300004153	Soil	FAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0058859_117463632	3300004798	Host-Associated	PFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0068869_1015276311	3300005334	Miscanthus Rhizosphere	RHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPILSVQQVR
Ga0068868_1002112802	3300005338	Miscanthus Rhizosphere	MFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0068868_1003518063	3300005338	Miscanthus Rhizosphere	MRRARPFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0068868_1007635042	3300005338	Miscanthus Rhizosphere	MASAPEPFRPCRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0068868_1010122771	3300005338	Miscanthus Rhizosphere	DTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0070659_1008901241	3300005366	Corn Rhizosphere	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0070700_1005527121	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0070663_1008247701	3300005455	Corn Rhizosphere	MLPNGAPWDMRRGRPFQPADTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGLIVSVQQVR*
Ga0070663_1018636732	3300005455	Corn Rhizosphere	YEDGRSAYIRVSPEAARYGPMVVMSIVREQQKAGDIPDGPLVSVQQVR*
Ga0070678_1012575862	3300005456	Miscanthus Rhizosphere	VYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0070678_1020751841	3300005456	Miscanthus Rhizosphere	VRYEDGRSAYIRVSPQAARYGPMVVMSIAREQQKAGNTPDGTLVSVQQVR*
Ga0070662_1012274761	3300005457	Corn Rhizosphere	MFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPIVTVQQVR*
Ga0070684_1005464741	3300005535	Corn Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARCGPMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0070684_1012107871	3300005535	Corn Rhizosphere	MFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0068853_1007864892	3300005539	Corn Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0070704_1009796411	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VMFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0070704_1015226261	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQ
Ga0068857_1012155702	3300005577	Corn Rhizosphere	GALWRMSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPILSVQQVR*
Ga0068854_1007039283	3300005578	Corn Rhizosphere	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPGGPIVSVQQVR*
Ga0070702_1015932021	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRRGRPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPIVTVQQVR*
Ga0068861_1011829832	3300005719	Switchgrass Rhizosphere	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0079222_107819352	3300006755	Agricultural Soil	MRRGRPFQPVDTKVMFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0105245_103216122	3300009098	Miscanthus Rhizosphere	MSRHRDTKVMFAVRYEDGRSACIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0105245_113752002	3300009098	Miscanthus Rhizosphere	MFAVHYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGSIVSVQQVR*
Ga0105247_100708744	3300009101	Switchgrass Rhizosphere	RYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0105243_123017961	3300009148	Miscanthus Rhizosphere	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGTLVSVQQIQ*
Ga0111538_127883531	3300009156	Populus Rhizosphere	MRRARPFQPADTKVMFAVYYDDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPEAPS
Ga0105242_114214421	3300009176	Miscanthus Rhizosphere	MRRGRPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGPMAVMSIAREQQKAGDIPDGPIVTVQQVR*
Ga0105242_122324522	3300009176	Miscanthus Rhizosphere	VRYEDGRSAYIRVSPEAARYGHLVVMSIAREQEKAGDIPDGPIVSVQQVR*
Ga0105242_128348951	3300009176	Miscanthus Rhizosphere	MRRARPFQPADTKVMFTVRYDDGRSAYIRVSPQAARYGPMVVMSIAREQQKAGEIPDGTLVSVQQVR*
Ga0105249_111840712	3300009553	Switchgrass Rhizosphere	MRRARPFQPADTKVRFAVRYEDGQSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0105249_111967881	3300009553	Switchgrass Rhizosphere	MRRGRPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGSIVSVQQVR*
Ga0126307_109325852	3300009789	Serpentine Soil	MRRARPFQPADTKVMFAVRYEDGRPAYIRVSPEAARYGHMVVMSVAREQQKAGDIPDGPLVSVQQVR*
Ga0126313_102149062	3300009840	Serpentine Soil	MFAVRYEDGRPAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0126313_113907702	3300009840	Serpentine Soil	MPRGRPFQPPDTKVMFAVSYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTIVSVKQVR*
Ga0126313_117446281	3300009840	Serpentine Soil	YDDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGMIASVKQVH*
Ga0126304_107292321	3300010037	Serpentine Soil	MYAVRYEDGRSAYIRVSSEAARHGNMVVLDIAREHQDASEIPAGTITSVKQVR*
Ga0126304_109641081	3300010037	Serpentine Soil	TKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0126315_106649791	3300010038	Serpentine Soil	MRRARPFQPADAKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPNGTLVSVQQV
Ga0126309_102975471	3300010039	Serpentine Soil	FDDDRTAYIRVSPEAARYGNLVVMSIASEQQKAGTIPAGTIASVKRVH*
Ga0126309_105070012	3300010039	Serpentine Soil	MRRARPFQPADTKVMFAVRYDDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGSIVSVQQVR*
Ga0126308_102713593	3300010040	Serpentine Soil	MRRARPFQPADPKVMFAVHYEDGRSAYIRVSPEAARYGHLAVMSIAREQQKAGELPDGAINSVKQVR*
Ga0126314_104922282	3300010042	Serpentine Soil	MRRARPFQPADTKVMFAVRYEDGRSAYIRVSLEAARYGHLVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0126310_105140001	3300010044	Serpentine Soil	YEDGRSAYIRVSLEAARYGHMVVMSIAREQQKAGDIPDGIIVSVKQVR*
Ga0126310_107943862	3300010044	Serpentine Soil	MSRLRDTKVMFAVHYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVKQVR*
Ga0126311_100181481	3300010045	Serpentine Soil	MRRARPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGHLAVMSIAREQQKAGEIP
Ga0126311_103409893	3300010045	Serpentine Soil	MFAVQYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGIIVSVKQVR*
Ga0126311_105136061	3300010045	Serpentine Soil	PGNMRRARPFQPADTKVMFAVRYEDGRPAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0126311_115464092	3300010045	Serpentine Soil	MRRSRPFQPADPKVIVAVNYSDGRSAYIRVDPETARHGTMVVMTVARERQDAGEIP
Ga0126306_107604921	3300010166	Serpentine Soil	MASAPEPFRPRRPDTKVMFAVYYDDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGMIASVKQVH*
Ga0134125_115417661	3300010371	Terrestrial Soil	RPFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0134125_129818251	3300010371	Terrestrial Soil	MFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQIQ*
Ga0105239_136456161	3300010375	Corn Rhizosphere	MASAPEPFRPRRPDTKVMFVVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0134127_114194902	3300010399	Terrestrial Soil	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPYGMIVSVQQVR*
Ga0134127_128524262	3300010399	Terrestrial Soil	VMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGSIVSVQQVR*
Ga0134122_118152262	3300010400	Terrestrial Soil	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDG
Ga0105246_105907192	3300011119	Miscanthus Rhizosphere	NGALWRMSRHRDSKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR*
Ga0105246_120165691	3300011119	Miscanthus Rhizosphere	MFAVRYDNGRSAYIRVSPQAARYGPMVVMSIAREQQKAGEIPDGTLVSVQQVR*
Ga0150985_1001022141	3300012212	Avena Fatua Rhizosphere	MRRARPFQPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0150985_1022379581	3300012212	Avena Fatua Rhizosphere	ARPFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR*
Ga0150985_1026889452	3300012212	Avena Fatua Rhizosphere	MFAVYYDDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0150985_1066866651	3300012212	Avena Fatua Rhizosphere	DGRTAYIRVTPEAARYGNLVVMSIACEQQKAGMIPAGTIASVKRVH*
Ga0150985_1094450101	3300012212	Avena Fatua Rhizosphere	MRRGRPFQPHDTKVLFAVRYADGRSAYIRVSPQAARYGPMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0150985_1105048422	3300012212	Avena Fatua Rhizosphere	MVSAGDTFRLRLRDTKVMFAVHYSDGRSAYIRVSPETARHGNLVVLDVARDRQGAGEIPDGPIVSVKQVR*
Ga0150985_1151171381	3300012212	Avena Fatua Rhizosphere	RPFQPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMGVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0150985_1163395321	3300012212	Avena Fatua Rhizosphere	ARPFQPADTKVMYAVYYDDGRSAYIRVSPEAARYGHLVVISIAREQQKAGGIPDGTLVGVKQVR*
Ga0150985_1172044532	3300012212	Avena Fatua Rhizosphere	MRRARPFQPADTKIMFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0150985_1204419641	3300012212	Avena Fatua Rhizosphere	MAADRPFFRPRTRDTKVMVAVRYSDGRSAYIRVSPETARHGSLVVLDVAREQQKAGDIPDGPILTVQQVR*
Ga0150985_1206076542	3300012212	Avena Fatua Rhizosphere	MRRARPFQPADTKVMFAVRCEDGRSAYIRVSPQAARYGPIVVMSIAREQQKAGDIPGGTLVSVKQVR*
Ga0150985_1224472711	3300012212	Avena Fatua Rhizosphere	RYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0134040_12692292	3300012389	Grasslands Soil	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0134053_12999072	3300012406	Grasslands Soil	MFAVRYEDGRSAYIRVSPEAARYGPMVVMSITREPQKAGDIPDGTLVSVQQVR*
Ga0150984_1006777501	3300012469	Avena Fatua Rhizosphere	MRRARPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKVGDIPDGPIVTVQQVR*
Ga0150984_1046377231	3300012469	Avena Fatua Rhizosphere	MSRHRDTKVMFAVHYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGEIPDGAIVSVKQVR*
Ga0150984_1059502221	3300012469	Avena Fatua Rhizosphere	FRPRLRDTKLMFAVTYSDGRSAYIRVSPETARHGNMVVLDIAHERQEAGDIPDGTIVSVKQVR*
Ga0150984_1069712021	3300012469	Avena Fatua Rhizosphere	MRRGRPFQPHDTKVMFAVRYADGRSAYIRVSPQAARYGPMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0150984_1092513802	3300012469	Avena Fatua Rhizosphere	MVSAGDTFRLRLRDTKVMFAVHYSDGRSAYIRVSPETARHGNLVVLDVARNRQGAGEIPDGPIVSVKQVR*
Ga0150984_1105595481	3300012469	Avena Fatua Rhizosphere	MRRARPFQPADTKVMYAVYYDDGRSAYIRVSPEAARYGHLVVISIAREQQKAGGIPDGTLVGVKQVR*
Ga0150984_1133548782	3300012469	Avena Fatua Rhizosphere	MISGRETFRPRLRDTKVMFVVTYSDGRSAYIRVDPETARHGNLVVLDIAREQQKAGDIPAGTIVSVKQVR*
Ga0150984_1153213301	3300012469	Avena Fatua Rhizosphere	RPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGPLVSVQQVR*
Ga0150984_1160806151	3300012469	Avena Fatua Rhizosphere	QPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGSIVSVQQVR
Ga0150984_1164119793	3300012469	Avena Fatua Rhizosphere	EDGRSAYIRVSPQAARYGPMVVMSIAREQQKAGDIPDGILVSVQQVR*
Ga0150984_1198332042	3300012469	Avena Fatua Rhizosphere	FQPADTKVMFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGDIPDGTLVSVQQVR*
Ga0164306_117913083	3300012988	Soil	YYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGEIPDGVIASVKQAH*
Ga0157374_120570291	3300013296	Miscanthus Rhizosphere	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVISIAREQQKAGGIPDGTLIGVKQVR*
Ga0157375_102078412	3300013308	Miscanthus Rhizosphere	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIARDQQKAGDIPDGMIVSVQQVR*
Ga0157375_132175241	3300013308	Miscanthus Rhizosphere	MRRTRPYNPRDTKIMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGEIPGGMIVSVKQVR*
Ga0157380_106414282	3300014326	Switchgrass Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGHIPDGPIVSVQQVR*
Ga0157377_104435332	3300014745	Miscanthus Rhizosphere	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGLIVSVQQVR*
Ga0157379_123485842	3300014968	Switchgrass Rhizosphere	MVSARDTFRPRTRDTKVMFAVTYGDGRSAYIRVDPETARHGNLVVLDVAREQQKAGDIPDGPIVSVKQVR*
Ga0157379_125277811	3300014968	Switchgrass Rhizosphere	MFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKSGDIPDGPIVSVQQVR*
Ga0132256_1030470501	3300015372	Arabidopsis Rhizosphere	MRRGRPFQPHDTKVMFAVRYEDGRSAYIRVSPQAARYGPMVVVSIAREQQKAGDIPDGTLVSVQQVR*
Ga0163161_112579822	3300017792	Switchgrass Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH
Ga0163161_119501801	3300017792	Switchgrass Rhizosphere	VRYDDGRSAYIRVSPQAARYGPMVVMSIAREQQKAGGIPDGTLVSVQQVR
Ga0173481_105702372	3300019356	Soil	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKVGDIPDGTLVSVQQVR
Ga0207710_104127442	3300025900	Switchgrass Rhizosphere	RYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207650_108879221	3300025925	Switchgrass Rhizosphere	MASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207706_101232992	3300025933	Corn Rhizosphere	MFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR
Ga0207706_113822651	3300025933	Corn Rhizosphere	NGALWRMSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207670_105490142	3300025936	Switchgrass Rhizosphere	PNGALWRMSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207661_106353142	3300025944	Corn Rhizosphere	MRRARPFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPAGTLVSVKQVR
Ga0207712_109273951	3300025961	Switchgrass Rhizosphere	MRRARPFQPTDTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR
Ga0207640_106536242	3300025981	Corn Rhizosphere	VADAPRPESVASAPEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH
Ga0207677_108409831	3300026023	Miscanthus Rhizosphere	APEPFRPRRPDTKVMFAVYYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH
Ga0207678_106345892	3300026067	Corn Rhizosphere	MLPNGAPWDMRRGRPFQPADTKVMFAVRYDDGQSAYIRVTPEAARYGHLVVLSIAREQQKAGDIPDGMIVSVQQVR
Ga0207648_101710903	3300026089	Miscanthus Rhizosphere	MSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207648_111375773	3300026089	Miscanthus Rhizosphere	MRRGRPFQPADTKVLFAVRYEDGRSAYIRVSPEAARYGPMAVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0207674_120144491	3300026116	Corn Rhizosphere	GALWRMSRHRDTKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPILSVQQVR
Ga0207675_1003260362	3300026118	Switchgrass Rhizosphere	MFAVRYEDGRSAYIRVSPEAARYGPMVVMSIAREQQKAGNTPDGTLVSVQQVR
Ga0207698_104986851	3300026142	Corn Rhizosphere	SWAKPCSMLPNGAPWAMRRARPFQPADTKVMFAVRYEDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGDIPDGPLVSVQQVR
Ga0209813_103762811	3300027866	Populus Endosphere	PPFFRPRTRDTKVMVAVVYSDGRSACIRVSPETARHGNLVVLDVARERQEAGEIPDGPIVSVKQVR
Ga0268265_125323711	3300028380	Switchgrass Rhizosphere	TKVMFAVRYEDGRSAYIRVSPEAARYGHLVVMSIAREQQKAGDIPDGPIVSVQQVR
Ga0268264_111554021	3300028381	Switchgrass Rhizosphere	DTKVMFAVRYKDGRSAYIRVSPEAARYGHMVVMSIAREQQKAGEIPDGVIASVKQAH
Ga0307415_1024583981	3300032126	Rhizosphere	MPRGRPFQPPDTKVMFAVSYEDGRSAYIRVSPEAARDGHMVVMSIAREQQKAGDIPDGI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073399

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences