Metagenome Family F073366

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073366
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	43 residues
Representative Sequence	PNKRLKLAGGDRFKGSGVLCPGGHGLSSNGLAPAGESPAA
Number of Associated Samples	76
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.14 %
% of genes near scaffold ends (potentially truncated)	76.67 %
% of genes from short scaffolds (< 2000 bps)	78.33 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (66.667 % of family members)
Environment Ontology (ENVO)	Unclassified (78.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (82.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF12158	DUF3592	7.50
PF00583	Acetyltransf_1	4.17
PF14534	DUF4440	2.50
PF07311	Dodecin	1.67
PF12681	Glyoxalase_2	1.67
PF07045	DUF1330	1.67
PF03544	TonB_C	1.67
PF15631	Imm-NTF2-2	1.67
PF03681	Obsolete Pfam Family	1.67
PF00561	Abhydrolase_1	0.83
PF01965	DJ-1_PfpI	0.83
PF14317	YcxB	0.83
PF00313	CSD	0.83
PF09413	DUF2007	0.83
PF14485	DUF4431	0.83
PF00005	ABC_tran	0.83
PF14279	HNH_5	0.83
PF08327	AHSA1	0.83
PF04191	PEMT	0.83
PF04229	GrpB	0.83
PF12680	SnoaL_2	0.83
PF00293	NUDIX	0.83
PF13857	Ank_5	0.83
PF04993	TfoX_N	0.83
PF13730	HTH_36	0.83
PF04365	BrnT_toxin	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.67
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	1.67
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.67
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.83
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.83
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.83 %
Unclassified	root	N/A	9.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.83 %
Unclassified	root	N/A	9.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	9.17 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.83 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	28.33 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.17 %
Unclassified	root	N/A	9.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	27.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.17 %
Unclassified	root	N/A	9.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.67 %
Candidatus Lokiarchaeota	phylum	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota	0.83 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	25.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Unclassified	root	N/A	9.17 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	1.67 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.67 %
unclassified Lokiarchaeota	no rank	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	25.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Unclassified	root	N/A	9.17 %
Actinobacteria bacterium RBG_13_63_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1.67 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.67 %
Candidatus Lokiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	0.83 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.83 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.83 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.83 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	25.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Unclassified	root	N/A	9.17 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	1.67 %
Actinobacteria bacterium RBG_13_63_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1.67 %
Methyloglobulus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus	0.83 %
Solimicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Solimicrobium	0.83 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.83 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.83 %
Candidatus Lokiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	25.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Unclassified	root	N/A	9.17 %
Dyella terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella terrae	1.67 %
Actinobacteria bacterium RBG_13_63_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1.67 %
unclassified Methyloglobulus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus	0.83 %
Solimicrobium silvestre	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Solimicrobium → Solimicrobium silvestre	0.83 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.83 %
Desulfospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira	0.83 %
Candidatus Lokiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	25.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Unclassified	root	N/A	9.17 %
Dyella terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella terrae	1.67 %
Actinobacteria bacterium RBG_13_63_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1.67 %
Methyloglobulus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus → Methyloglobulus sp.	0.83 %
Desulfospira joergensenii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	0.83 %
Solimicrobium silvestre	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Solimicrobium → Solimicrobium silvestre	0.83 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.83 %
Candidatus Lokiarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002561\|JGI25384J37096_10020269	All Organisms → cellular organisms → Bacteria	2589	Open in IMG/M
3300002561\|JGI25384J37096_10138417	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	792	Open in IMG/M
3300002562\|JGI25382J37095_10016287	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300002908\|JGI25382J43887_10291653	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300002908\|JGI25382J43887_10296624	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	710	Open in IMG/M
3300005166\|Ga0066674_10027548	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300005167\|Ga0066672_10476922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloglobulus → unclassified Methyloglobulus → Methyloglobulus sp.	812	Open in IMG/M
3300005171\|Ga0066677_10230714	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1045	Open in IMG/M
3300005172\|Ga0066683_10240069	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1123	Open in IMG/M
3300005174\|Ga0066680_10505251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300005174\|Ga0066680_10842505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella terrae	548	Open in IMG/M
3300005175\|Ga0066673_10301936	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	933	Open in IMG/M
3300005176\|Ga0066679_10604291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	715	Open in IMG/M
3300005178\|Ga0066688_10244297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1148	Open in IMG/M
3300005178\|Ga0066688_10299153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300005178\|Ga0066688_10703980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	641	Open in IMG/M
3300005178\|Ga0066688_10738174	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300005179\|Ga0066684_10440795	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005180\|Ga0066685_10743347	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300005447\|Ga0066689_10287048	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005450\|Ga0066682_10015977	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4127	Open in IMG/M
3300005540\|Ga0066697_10598028	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005552\|Ga0066701_10136757	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1465	Open in IMG/M
3300005552\|Ga0066701_10194055	Not Available	1242	Open in IMG/M
3300005552\|Ga0066701_10395375	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	855	Open in IMG/M
3300005552\|Ga0066701_10624887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300005553\|Ga0066695_10056249	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2348	Open in IMG/M
3300005553\|Ga0066695_10501492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300005553\|Ga0066695_10591329	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	667	Open in IMG/M
3300005554\|Ga0066661_10105027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1693	Open in IMG/M
3300005554\|Ga0066661_10170643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1338	Open in IMG/M
3300005554\|Ga0066661_10384957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300005554\|Ga0066661_10494326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300005554\|Ga0066661_10584405	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	665	Open in IMG/M
3300005554\|Ga0066661_10664746	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	613	Open in IMG/M
3300005555\|Ga0066692_10160825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1385	Open in IMG/M
3300005555\|Ga0066692_10598351	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	693	Open in IMG/M
3300005556\|Ga0066707_10593109	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005556\|Ga0066707_10734621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	615	Open in IMG/M
3300005556\|Ga0066707_10872662	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005557\|Ga0066704_10094508	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300005558\|Ga0066698_10206799	Not Available	1344	Open in IMG/M
3300005559\|Ga0066700_10039980	All Organisms → cellular organisms → Bacteria	2817	Open in IMG/M
3300005559\|Ga0066700_10198861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1383	Open in IMG/M
3300005560\|Ga0066670_10329918	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300005560\|Ga0066670_10631575	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005561\|Ga0066699_11266438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300005568\|Ga0066703_10002954	All Organisms → cellular organisms → Bacteria	7086	Open in IMG/M
3300005568\|Ga0066703_10009275	All Organisms → cellular organisms → Bacteria	4655	Open in IMG/M
3300005568\|Ga0066703_10185097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_13_63_9	1260	Open in IMG/M
3300005568\|Ga0066703_10223848	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300005568\|Ga0066703_10612409	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005568\|Ga0066703_10798533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300005574\|Ga0066694_10243068	Not Available	853	Open in IMG/M
3300005576\|Ga0066708_10926201	Not Available	543	Open in IMG/M
3300005598\|Ga0066706_10015043	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4474	Open in IMG/M
3300006031\|Ga0066651_10026504	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
3300006031\|Ga0066651_10329519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300006032\|Ga0066696_10210390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300006046\|Ga0066652_101223512	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006791\|Ga0066653_10406624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300006796\|Ga0066665_10612787	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300006796\|Ga0066665_11378625	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300006797\|Ga0066659_10309482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella terrae	1209	Open in IMG/M
3300006797\|Ga0066659_10779589	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	789	Open in IMG/M
3300006797\|Ga0066659_10837483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	764	Open in IMG/M
3300006797\|Ga0066659_11185902	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	638	Open in IMG/M
3300006800\|Ga0066660_10744577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300009137\|Ga0066709_100405871	Not Available	1891	Open in IMG/M
3300010304\|Ga0134088_10206992	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	940	Open in IMG/M
3300010329\|Ga0134111_10105817	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300010333\|Ga0134080_10058813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1524	Open in IMG/M
3300012198\|Ga0137364_10858240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300012199\|Ga0137383_10505327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Solimicrobium → Solimicrobium silvestre	885	Open in IMG/M
3300012206\|Ga0137380_10039147	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4372	Open in IMG/M
3300012207\|Ga0137381_10019324	All Organisms → cellular organisms → Bacteria	5372	Open in IMG/M
3300012207\|Ga0137381_11160513	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	664	Open in IMG/M
3300012207\|Ga0137381_11671228	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012208\|Ga0137376_10654831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300012209\|Ga0137379_10182372	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300012209\|Ga0137379_10511658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300012209\|Ga0137379_11084019	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	706	Open in IMG/M
3300012210\|Ga0137378_10031532	All Organisms → cellular organisms → Bacteria	4698	Open in IMG/M
3300012210\|Ga0137378_11397206	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	614	Open in IMG/M
3300012285\|Ga0137370_10341313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300012349\|Ga0137387_10016556	All Organisms → cellular organisms → Bacteria	4484	Open in IMG/M
3300012349\|Ga0137387_10542307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300012351\|Ga0137386_10994143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300012357\|Ga0137384_10852725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	735	Open in IMG/M
3300012359\|Ga0137385_10644756	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300012918\|Ga0137396_10216049	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300012976\|Ga0134076_10005247	All Organisms → cellular organisms → Bacteria	4237	Open in IMG/M
3300012977\|Ga0134087_10007028	All Organisms → cellular organisms → Bacteria	3722	Open in IMG/M
3300018482\|Ga0066669_10639002	Not Available	935	Open in IMG/M
3300026296\|Ga0209235_1209832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300026307\|Ga0209469_1020123	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300026309\|Ga0209055_1247888	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300026313\|Ga0209761_1033051	All Organisms → cellular organisms → Bacteria → Proteobacteria	3080	Open in IMG/M
3300026315\|Ga0209686_1038939	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300026316\|Ga0209155_1037498	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300026316\|Ga0209155_1103936	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300026326\|Ga0209801_1123798	Not Available	1107	Open in IMG/M
3300026326\|Ga0209801_1162324	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	934	Open in IMG/M
3300026327\|Ga0209266_1031967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2777	Open in IMG/M
3300026332\|Ga0209803_1051669	All Organisms → cellular organisms → Bacteria	1815	Open in IMG/M
3300026333\|Ga0209158_1118251	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300026334\|Ga0209377_1010144	All Organisms → cellular organisms → Bacteria → Proteobacteria	5324	Open in IMG/M
3300026335\|Ga0209804_1328299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	515	Open in IMG/M
3300026523\|Ga0209808_1286795	Not Available	528	Open in IMG/M
3300026524\|Ga0209690_1056866	All Organisms → cellular organisms → Bacteria → Proteobacteria	1722	Open in IMG/M
3300026529\|Ga0209806_1021000	All Organisms → cellular organisms → Bacteria	3353	Open in IMG/M
3300026529\|Ga0209806_1120798	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300026538\|Ga0209056_10034667	All Organisms → cellular organisms → Bacteria	4707	Open in IMG/M
3300026538\|Ga0209056_10034921	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4686	Open in IMG/M
3300026538\|Ga0209056_10664515	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	526	Open in IMG/M
3300026547\|Ga0209156_10144587	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1154	Open in IMG/M
3300027748\|Ga0209689_1295579	Not Available	630	Open in IMG/M
3300028536\|Ga0137415_10414915	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.83%
Loam	Environmental → Terrestrial → Soil → Loam	4.17%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	74.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	66.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.17%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25384J37096_100202695	3300002561	Grasslands Soil	MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSVR
JGI25384J37096_101384172	3300002561	Grasslands Soil	NTRLKLAGGDRSEGTGVFVPGGHGLSSNSLASAGESPAA*
JGI25382J37095_100162873	3300002562	Grasslands Soil	MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSVRRPVGNRGQQ*
JGI25382J43887_102916531	3300002908	Grasslands Soil	MPNKRLKLAGGDRSKGSGVLCPGGHGLSSHTTALAGESPAAYARSV
JGI25382J43887_102966241	3300002908	Grasslands Soil	RLSNKRLKLTGGDRLKGSGVLCPGGHGLSSNGLAPNCGSPAA*
Ga0066674_100275486	3300005166	Soil	PNKRLKLPGGDRFKGSGVLCPGGHGLPSKTLAPASGSPAA*
Ga0066672_104769222	3300005167	Soil	IVNGTPPNKRLKLPGADRSKRIGVLCPGGHALTATTLAPASESPAA*
Ga0066677_102307142	3300005171	Soil	PNKRLKLAGGDRSKGSGVLCPGGHGLSSITLAPAGEAPAA*
Ga0066683_102400693	3300005172	Soil	PNKRLKLPGGDRSKGSGVLCPGGHGLSSISLAPASESPAA*
Ga0066680_105052511	3300005174	Soil	VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPAA*
Ga0066680_108425052	3300005174	Soil	VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASP
Ga0066673_103019361	3300005175	Soil	MSRRALPNMRLKLTGADRSKGTGVLCPGGHGLSSNGLAPAGGSPAA*
Ga0066679_106042911	3300005176	Soil	MIVPSWRALPNKRLKLAGGDRFKGSGVWCPGGHGLSSHILAPAGESPAA*
Ga0066688_102442972	3300005178	Soil	PLLSRHGQPPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA*
Ga0066688_102991533	3300005178	Soil	VPPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA*
Ga0066688_107039802	3300005178	Soil	NKRLKLAGGDRSKGSGVLCPGGHGLSSHILAPAGESPAA*
Ga0066688_107381742	3300005178	Soil	MAPNKLLKLAGANRFKGSGVLCPGGHGLSSNTLAPARGSP
Ga0066684_104407952	3300005179	Soil	MAVSLGLWRTALPNMRLKLAGADRFKGNGVLCPGGHGLSSNTLAPA
Ga0066685_107433471	3300005180	Soil	TKVVSESRPNKRLKLAGGDRLNGSGALCPGGHGLSSNTLAPAGESPAA*
Ga0066689_102870483	3300005447	Soil	VTPADKGRLPNKRLKLPGGDRLKGSGVLCPGGHELSFKILASAGGSPAA*
Ga0066682_100159773	3300005450	Soil	MRRMGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA*
Ga0066697_105980281	3300005540	Soil	VIIRLPLPNKRLKLAGGDRPRGSGVLCPGGLGLSSNTLAPASESPA
Ga0066701_101367571	3300005552	Soil	RLKLAGGDRSGETERLRPGGRGLSSHILAPAAESPAA*
Ga0066701_101940554	3300005552	Soil	MLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAG
Ga0066701_103953751	3300005552	Soil	AMLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGASPAA*
Ga0066701_106248871	3300005552	Soil	AMLLPNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA*
Ga0066695_100562494	3300005553	Soil	MGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA*
Ga0066695_105014921	3300005553	Soil	PPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR*
Ga0066695_105913292	3300005553	Soil	MAPNKRLKLAGANRFKGSQVLCPGGHGLSSNTLASANGS
Ga0066661_101050271	3300005554	Soil	LAGGDRFKGSGVLCPGGHGLSSTTLAPTGESPAA*
Ga0066661_101706431	3300005554	Soil	NKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA*
Ga0066661_103849572	3300005554	Soil	PNKRLKLAGGDRFKGNGVLCPGGHGLSSNTLAPAGGSPAA*
Ga0066661_104943262	3300005554	Soil	VLPNKRLKLTGGDRFKGSGVLCPGGHELSSNGLAPAGGSPAA*
Ga0066661_105844052	3300005554	Soil	PNKRLKLTGGDRSKGSGVLCPGGHGLSSNGVAPAGGSPAA*
Ga0066661_106647462	3300005554	Soil	LTGGDRSKGTGMLCPGGHGLSSDGLAPAGGSPAA*
Ga0066692_101608251	3300005555	Soil	LPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR*
Ga0066692_105983512	3300005555	Soil	MLSAASDVPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGGSPAA*
Ga0066707_105931092	3300005556	Soil	ALPNKRLKLAGADRFNGSGVLCPVGHGLTSHTLAPPSGSPAA*
Ga0066707_107346212	3300005556	Soil	VSFDVLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA*
Ga0066707_108726623	3300005556	Soil	ARPNKRLKLAGGDRSKGSGVLCPGGHALSSTPLAPAGEAPAA*
Ga0066704_100945083	3300005557	Soil	MPLPNKRLKLTGGDRSKGSGVFCPGAHRLTPSDLAPACESPRSLSAIR*
Ga0066698_102067992	3300005558	Soil	MRLKLAGGDRFKGSGVFPPCGRGLSAIGLAPASESPAA*
Ga0066700_100399806	3300005559	Soil	MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGGSP
Ga0066700_101988613	3300005559	Soil	VSFDVLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA
Ga0066670_103299184	3300005560	Soil	PPNKRLKLAGGDRSKGSGVLCPGEQGLSSTILAPAGASPAA*
Ga0066670_106315751	3300005560	Soil	PNKRLKLAGGDRFKGSGVLCPGGHGLSSNGLAPAGESPAA*
Ga0066699_112664381	3300005561	Soil	VLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPA
Ga0066703_1000295414	3300005568	Soil	VVVTLLPNKRLKLAGGERSKGSGVLCPGGHGLSSHGLAPAGGSPAA*
Ga0066703_100092759	3300005568	Soil	MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAGG
Ga0066703_101850971	3300005568	Soil	PNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA*
Ga0066703_102238481	3300005568	Soil	PLPNKRLKLTGGDRSKGSGVFCPGADRLTPSDLAPACESPRSLSAIR*
Ga0066703_106124091	3300005568	Soil	VCGRLAPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPA
Ga0066703_107985332	3300005568	Soil	VTISAIRRVAPNKRLKLTGGGRFKGSGVLCPGGHGLSSTTLAP
Ga0066694_102430683	3300005574	Soil	MSRRALPNMRLKLTGADRSKGTGVLCPGGHGLSSNGLAP
Ga0066708_109262012	3300005576	Soil	RLKLAGGDRSKGSGVLCPGGHGLTSNGLAPAGGSPAV*
Ga0066706_100150433	3300005598	Soil	MRLKLAGGDRFKGSGVFPPGGRGLSAIGLAPASESPAA*
Ga0066651_100265046	3300006031	Soil	VVSSRPNKRLKLTGGDRFKGSGVLCPGGHELSSNGLAPAGGSPAA*
Ga0066651_103295192	3300006031	Soil	LPNKRLKLPGGDRSKGSGVLCPGGHGLSSNTLALASGSPAA*
Ga0066696_102103905	3300006032	Soil	AIVNGTPPNKRLKLAGADRSKRIGVLCPGGHALTATTLAPASESPAA*
Ga0066652_1012235122	3300006046	Soil	MKRTPPNKRLKLAGADRSKGSGVLSSWRGTDCATTLALVGGTPAA*
Ga0066653_104066241	3300006791	Soil	MLLPNKRLKLAGADRFKGSGVLCPGGHGLSSHTLARAGDSPAA*
Ga0066665_106127872	3300006796	Soil	MLAPNKRLKLAGGDRFNGTGVLCAGAHELSFNELRPAGESPAA*
Ga0066665_113786252	3300006796	Soil	ARGATSGQLGVVLPNKRLKLTGGDRSNGNGVLCPWRGTDCRPLHLAPAGESPAA*
Ga0066659_103094823	3300006797	Soil	VLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPA
Ga0066659_107795891	3300006797	Soil	PPNKRLKLAGGDRSEGSGVLCDGGHGLSSNTLAPAGESPAA*
Ga0066659_108374832	3300006797	Soil	KLTGDDRSKGNGVLCPGGHGLSSNTLAPVGESPAA*
Ga0066659_111859022	3300006797	Soil	PNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA*
Ga0066660_107445772	3300006800	Soil	KLAGGDRFKGSGVLCPGGHGLSSHGLARAGESPAA*
Ga0066709_1004058711	3300009137	Grasslands Soil	MPLPNKRLKLAGVYRLSGSGVLCPGGHGLSSTTLAP
Ga0134088_102069921	3300010304	Grasslands Soil	VKLLPNNRLKMPGAARSKGSGVLCPGGHGLSSNGLAPAGESPAAYARSVRL
Ga0134111_101058171	3300010329	Grasslands Soil	KLAGGDRFKGNRVLCAGAHDLSFNGLAPAGGSPAA*
Ga0134080_100588133	3300010333	Grasslands Soil	PNKRLKLTGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR*
Ga0137364_108582403	3300012198	Vadose Zone Soil	MEPPNKRLKLAGGDRFKGNGVLCPGRHGLSSNTLAPAGES
Ga0137383_105053272	3300012199	Vadose Zone Soil	NKRLKLAGGDRFKGSGVLCPGGHGLSSNSLAPVGGSPAA*
Ga0137380_100391475	3300012206	Vadose Zone Soil	VGRAPNKRLKLAGGDRPRESECCALTGHGLWSTTLAPAGGSPAA*
Ga0137380_100705381	3300012206	Vadose Zone Soil	MNCVPLPNKRLKLTGADRSKGSGVLCPWRGHGLTSTDLAPAGGS
Ga0137381_100193241	3300012207	Vadose Zone Soil	KRLTLAGDHRFNGSGVLCPGVYGLSSNGLAPEGGSPAV*
Ga0137381_111605131	3300012207	Vadose Zone Soil	LPNKRLKLTGGDRSKGSGVLCPGGHGLTSTTLVPAGETPAA*
Ga0137381_116712281	3300012207	Vadose Zone Soil	VEFIERAPNKRLKLAGGDRSKGSGVLCPGGHGLSSDGLAPAG
Ga0137376_106548311	3300012208	Vadose Zone Soil	PNKRLKLTGGDRSKGSGVLCPGGHGLSSTGLAPAGESPAA*
Ga0137379_101823722	3300012209	Vadose Zone Soil	VKLLPNKRLKLAGGDRFKGSGVLCPGGHGLSANGLAPAAESPAA*
Ga0137379_105116581	3300012209	Vadose Zone Soil	KGAAKELRTMKLLPNKRLKLTGGDRFKGNGVLCPWRGTGRSSTRLAPARESPAA*
Ga0137379_110840192	3300012209	Vadose Zone Soil	MTALPNKRLKLAGGGRSKGSGGLCPGGYGLSSSTLAPAGGSPAA
Ga0137378_100315329	3300012210	Vadose Zone Soil	MNCVPLPNKRLKLTGADRSKGSGVLCPWRGHGLTSTDLAPAGGSPAA*
Ga0137378_113972062	3300012210	Vadose Zone Soil	PPNKRLKLSGGDRSNGIGVLCPGGHGLSSNTLAPAAESPAA*
Ga0137370_103413131	3300012285	Vadose Zone Soil	MAPNKRLKLAGGDRSKGSGVLCPGGHGLSSNTLAPAGGSPAA
Ga0137387_100165563	3300012349	Vadose Zone Soil	VGWAPNKRLKLAGGDRHRESECCALTGHGLWSTTLAPAGGSPAA*
Ga0137387_105423071	3300012349	Vadose Zone Soil	MCRPPNKRLKLAGGDRFKGNGVLCPGGHGLSSNGLAP
Ga0137386_109941432	3300012351	Vadose Zone Soil	PNKRLKLAGGDRSKGTGVLCPGGHGLSSNTLAPAGESPAA*
Ga0137384_108527251	3300012357	Vadose Zone Soil	LRAELPNKRLKLAGVYRLDGSGVLCPDGHGLSSNGLAPAGE
Ga0137385_106447561	3300012359	Vadose Zone Soil	PPNKRLKLTGGDRFEGSGVLCPGGHGLSSHTRVPAGEAPAA*
Ga0137396_102160493	3300012918	Vadose Zone Soil	MALLPNKRLKLAGADRSKGSGVLCPGGHGLTSTTLAPPGGSPA
Ga0134076_100052475	3300012976	Grasslands Soil	MQPPNKRLKLTGGNRSKGSGVLCPGKHGLSSHTLAPAGGSPAA*
Ga0134087_100070286	3300012977	Grasslands Soil	VRLPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPA
Ga0066669_106390022	3300018482	Grasslands Soil	MRAAPNKNVKLAGVDRSNGNGVLCLGGHGLSFNTLAPAGGAP
Ga0209235_12098321	3300026296	Grasslands Soil	VRLPPNKRLKLAGGDRFKGSGVLCPGGHGLSSHILAPAGESPAR
Ga0209469_10201235	3300026307	Soil	MGLPNKRLKLAGGDRFKGIGVLCPGGHGLSSNTLAPASESPAA
Ga0209055_12478881	3300026309	Soil	MLLPNKRLKLAGGDRFKRSGVLCPSGHGLSSNTLAPAG
Ga0209761_10330516	3300026313	Grasslands Soil	MPLPNKRLKLTGGDRSKGSEVLCPGAHRLTSSDLAPACESPAA
Ga0209686_10389395	3300026315	Soil	GTWGPKPVLPNKRLKLAGGYRFNGIGVLCPGGHGLSSHILAPAGASPAA
Ga0209155_10374981	3300026316	Soil	VRVLPNKRLKLTGGDRSKGSGVLCPGGRGLTSNGLAPAGESPAA
Ga0209155_11039361	3300026316	Soil	MMPPNKRLKLSGGERCKGNGALCPGGHGLSSHTLAPASGS
Ga0209801_11237981	3300026326	Soil	MKNRSMPPNKRLKLTGGNRSKGSGVLCPGGHGLSSNGLAPASRSP
Ga0209801_11623242	3300026326	Soil	HCVMSCVRVLPNNRLKLTGGDRSKGSGVLCPGGRGLTSNGLAPAGESPAA
Ga0209266_10319671	3300026327	Soil	PNKRLKLAGGDRFKGIGVLCPGGHGLSSNGLAPASESPAA
Ga0209803_10516691	3300026332	Soil	VTPADKGRLPNKRLKLPGGDRLKGSGVLCPGGHELSFKILASAGGSPAA
Ga0209158_11182511	3300026333	Soil	VGVAMPLPNKRLKLTGGDRSKGSGVFCPGADRLTPSDLAPACESPRSLSAIR
Ga0209377_10101448	3300026334	Soil	GSVEKQPPNKRLKLAGGDRFRGSGVLCPGGHGLSSNTLAPAGESPAA
Ga0209804_13282991	3300026335	Soil	LGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLAPAGGSPAA
Ga0209808_12867951	3300026523	Soil	VTIALPNKRLKLTGGDRSSGIGVLCPGGHGLSSNTLAPPSESP
Ga0209690_10568661	3300026524	Soil	VIIQLPLPNKRLKLAGGDRSKGNGVLCPGGHGLSSIT
Ga0209806_10210006	3300026529	Soil	VVVTLLPNKRLKLAGGERSKGSGVLCPGGHGLSSHGLAPAGGSPAA
Ga0209806_11207981	3300026529	Soil	MPPNKRLKLAGGDRLKGSGVLCPGGHGLSSNTLAPAG
Ga0209056_100346679	3300026538	Soil	VRRDAAKVLPNKRLKVTGGDRFQGSGVLCPGGHGLSSHTLAAAGESPAA
Ga0209056_100349212	3300026538	Soil	MWRIRPLPNKRLKLAGGDRLKGNGALCPGGHRLSSTTLAPASESPAA
Ga0209056_100383491	3300026538	Soil	RPNKRLKLPGGDRFKGIGVLCPWRGTDFVHTLAPAGESPAA
Ga0209056_106645151	3300026538	Soil	MKSPPNKRLKLAGGDRLKGSGVLCPGGYGLSSTTLA
Ga0209156_101445873	3300026547	Soil	SEPPNKRLKLAGGDRFEGSGVLCAGGHGLSSNTLAPAGESPAA
Ga0209689_12955791	3300027748	Soil	VLGKYANGLPNKRLKLAGADRLKGSGVLCPGGHGLSSNGLA
Ga0137415_104149153	3300028536	Vadose Zone Soil	MCGCMPNMRLKLAGRDRFKRSGVLCPVPGHGLSSTALA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073366

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences