Metagenome Family F073301

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073301
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	41 residues
Representative Sequence	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPG
Number of Associated Samples	95
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.33 %
% of genes near scaffold ends (potentially truncated)	96.67 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (78.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.500 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.29% β-sheet: 0.00% Coil/Unstructured: 89.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF12728	HTH_17	6.67
PF02467	Whib	2.50
PF00392	GntR	1.67
PF10935	DUF2637	1.67
PF02861	Clp_N	1.67
PF13977	TetR_C_6	0.83
PF01610	DDE_Tnp_ISL3	0.83
PF07702	UTRA	0.83
PF13560	HTH_31	0.83
PF13384	HTH_23	0.83
PF08279	HTH_11	0.83
PF01202	SKI	0.83
PF02371	Transposase_20	0.83
PF02720	DUF222	0.83
PF00805	Pentapeptide	0.83
PF14104	DUF4277	0.83
PF03551	PadR	0.83
PF00293	NUDIX	0.83
PF12696	TraG-D_C	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	1.67
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.83
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.83
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.83
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.83
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
All Organisms	root	All Organisms	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
cellular organisms	root	All Organisms → cellular organisms	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	20.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	5.00 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.67 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.83 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.00 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1.67 %
Bailinhaonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella	0.83 %
Plantactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Plantactinospora	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.83 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Mycobacterium simulans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simulans	0.83 %
Bailinhaonella thermotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	0.83 %
Micromonospora deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	0.83 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.83 %
unclassified Micromonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora	0.83 %
unclassified Plantactinospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Plantactinospora → unclassified Plantactinospora	0.83 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.83 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.33 %
Micromonospora sp. ATCC 39149	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	0.83 %
Streptomyces sp. G1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	0.83 %
Plantactinospora sp. BB1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Plantactinospora → unclassified Plantactinospora → Plantactinospora sp. BB1	0.83 %
Mycobacterium simulans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simulans	0.83 %
Bailinhaonella thermotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	0.83 %
Micromonospora deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	0.83 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.83 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100517484	Not Available	837	Open in IMG/M
3300005344\|Ga0070661_101054979	Not Available	676	Open in IMG/M
3300005436\|Ga0070713_102412537	Not Available	508	Open in IMG/M
3300005471\|Ga0070698_100994843	Not Available	786	Open in IMG/M
3300006059\|Ga0075017_100306247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1175	Open in IMG/M
3300006797\|Ga0066659_11712518	Not Available	530	Open in IMG/M
3300009522\|Ga0116218_1530359	Not Available	524	Open in IMG/M
3300009672\|Ga0116215_1220531	Not Available	833	Open in IMG/M
3300009698\|Ga0116216_10072740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	2114	Open in IMG/M
3300009698\|Ga0116216_10437876	Not Available	792	Open in IMG/M
3300009698\|Ga0116216_10892277	Not Available	532	Open in IMG/M
3300009700\|Ga0116217_10109944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1876	Open in IMG/M
3300009700\|Ga0116217_10128652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1707	Open in IMG/M
3300009700\|Ga0116217_10491556	Not Available	772	Open in IMG/M
3300010043\|Ga0126380_11491630	All Organisms → cellular organisms → Bacteria → Terrabacteria group	598	Open in IMG/M
3300010337\|Ga0134062_10742429	Not Available	520	Open in IMG/M
3300010362\|Ga0126377_13315841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simulans	520	Open in IMG/M
3300010373\|Ga0134128_12493926	Not Available	570	Open in IMG/M
3300010379\|Ga0136449_100178005	Not Available	4100	Open in IMG/M
3300010379\|Ga0136449_103020013	Not Available	656	Open in IMG/M
3300010379\|Ga0136449_104622299	Not Available	504	Open in IMG/M
3300012199\|Ga0137383_11216338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	541	Open in IMG/M
3300012354\|Ga0137366_10118138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora deserti	2004	Open in IMG/M
3300012359\|Ga0137385_10959390	Not Available	706	Open in IMG/M
3300012971\|Ga0126369_13527066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	512	Open in IMG/M
3300014838\|Ga0182030_10253081	Not Available	2010	Open in IMG/M
3300016294\|Ga0182041_11422629	Not Available	637	Open in IMG/M
3300016319\|Ga0182033_11538583	Not Available	601	Open in IMG/M
3300016319\|Ga0182033_11933028	Not Available	537	Open in IMG/M
3300016387\|Ga0182040_10958266	Not Available	712	Open in IMG/M
3300016422\|Ga0182039_11780491	Not Available	564	Open in IMG/M
3300017822\|Ga0187802_10345630	Not Available	584	Open in IMG/M
3300017823\|Ga0187818_10399509	Not Available	610	Open in IMG/M
3300017823\|Ga0187818_10477830	Not Available	558	Open in IMG/M
3300017924\|Ga0187820_1045193	Not Available	1180	Open in IMG/M
3300017932\|Ga0187814_10336183	Not Available	582	Open in IMG/M
3300017942\|Ga0187808_10009792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3718	Open in IMG/M
3300017942\|Ga0187808_10298072	Not Available	726	Open in IMG/M
3300017943\|Ga0187819_10340718	Not Available	867	Open in IMG/M
3300017955\|Ga0187817_10983348	Not Available	540	Open in IMG/M
3300017973\|Ga0187780_10181555	Not Available	1465	Open in IMG/M
3300017973\|Ga0187780_10994256	Not Available	611	Open in IMG/M
3300018007\|Ga0187805_10430040	Not Available	615	Open in IMG/M
3300021477\|Ga0210398_11077169	Not Available	639	Open in IMG/M
3300025504\|Ga0208356_1113077	Not Available	510	Open in IMG/M
3300025928\|Ga0207700_11668945	Not Available	563	Open in IMG/M
3300026078\|Ga0207702_11284361	Not Available	726	Open in IMG/M
3300027043\|Ga0207800_1034671	Not Available	723	Open in IMG/M
3300027330\|Ga0207777_1090382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300027853\|Ga0209274_10280053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300027882\|Ga0209590_11055339	Not Available	504	Open in IMG/M
3300027905\|Ga0209415_10173815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2099	Open in IMG/M
3300027968\|Ga0209061_1042712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1955	Open in IMG/M
3300028828\|Ga0307312_10578597	Not Available	743	Open in IMG/M
3300028881\|Ga0307277_10572487	Not Available	507	Open in IMG/M
3300029943\|Ga0311340_10255384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1707	Open in IMG/M
3300029944\|Ga0311352_10259793	Not Available	1458	Open in IMG/M
3300030007\|Ga0311338_10047813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5734	Open in IMG/M
3300030053\|Ga0302177_10148121	Not Available	1325	Open in IMG/M
3300030399\|Ga0311353_10771187	Not Available	823	Open in IMG/M
3300030494\|Ga0310037_10041307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2207	Open in IMG/M
3300030503\|Ga0311370_12173291	Not Available	547	Open in IMG/M
3300030520\|Ga0311372_11540452	Not Available	816	Open in IMG/M
3300030524\|Ga0311357_11349537	Not Available	610	Open in IMG/M
3300030618\|Ga0311354_10808560	Not Available	884	Open in IMG/M
3300031236\|Ga0302324_102762499	Not Available	592	Open in IMG/M
3300031573\|Ga0310915_11252591	Not Available	512	Open in IMG/M
3300031679\|Ga0318561_10633125	Not Available	589	Open in IMG/M
3300031679\|Ga0318561_10722978	Not Available	547	Open in IMG/M
3300031679\|Ga0318561_10739871	Not Available	540	Open in IMG/M
3300031723\|Ga0318493_10143388	Not Available	1231	Open in IMG/M
3300031723\|Ga0318493_10607079	Not Available	610	Open in IMG/M
3300031748\|Ga0318492_10005970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4712	Open in IMG/M
3300031748\|Ga0318492_10346343	All Organisms → cellular organisms → Bacteria → Terrabacteria group	777	Open in IMG/M
3300031765\|Ga0318554_10713337	Not Available	562	Open in IMG/M
3300031768\|Ga0318509_10195740	Not Available	1123	Open in IMG/M
3300031770\|Ga0318521_10388998	Not Available	830	Open in IMG/M
3300031770\|Ga0318521_10707492	Not Available	612	Open in IMG/M
3300031771\|Ga0318546_10649851	Not Available	742	Open in IMG/M
3300031792\|Ga0318529_10019611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2676	Open in IMG/M
3300031799\|Ga0318565_10521622	Not Available	573	Open in IMG/M
3300031799\|Ga0318565_10531876	Not Available	567	Open in IMG/M
3300031821\|Ga0318567_10428548	Not Available	750	Open in IMG/M
3300031831\|Ga0318564_10521182	Not Available	515	Open in IMG/M
3300031832\|Ga0318499_10234587	Not Available	713	Open in IMG/M
3300031845\|Ga0318511_10364494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	659	Open in IMG/M
3300031845\|Ga0318511_10539297	Not Available	541	Open in IMG/M
3300031846\|Ga0318512_10527244	Not Available	600	Open in IMG/M
3300031859\|Ga0318527_10453363	Not Available	547	Open in IMG/M
3300031879\|Ga0306919_10395525	Not Available	1059	Open in IMG/M
3300031879\|Ga0306919_10865566	Not Available	693	Open in IMG/M
3300031890\|Ga0306925_11539997	Not Available	649	Open in IMG/M
3300031894\|Ga0318522_10427336	Not Available	502	Open in IMG/M
3300031896\|Ga0318551_10542628	Not Available	669	Open in IMG/M
3300031896\|Ga0318551_10630244	Not Available	619	Open in IMG/M
3300031954\|Ga0306926_12912371	Not Available	514	Open in IMG/M
3300032039\|Ga0318559_10510503	Not Available	561	Open in IMG/M
3300032041\|Ga0318549_10554293	Not Available	516	Open in IMG/M
3300032043\|Ga0318556_10757629	Not Available	505	Open in IMG/M
3300032044\|Ga0318558_10536763	Not Available	584	Open in IMG/M
3300032063\|Ga0318504_10487335	Not Available	590	Open in IMG/M
3300032064\|Ga0318510_10377402	Not Available	601	Open in IMG/M
3300032066\|Ga0318514_10272927	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300032066\|Ga0318514_10478350	Not Available	662	Open in IMG/M
3300032068\|Ga0318553_10774097	Not Available	502	Open in IMG/M
3300032090\|Ga0318518_10400053	Not Available	705	Open in IMG/M
3300032160\|Ga0311301_10034611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12711	Open in IMG/M
3300032160\|Ga0311301_10625847	Not Available	1541	Open in IMG/M
3300032160\|Ga0311301_11787196	Not Available	733	Open in IMG/M
3300032160\|Ga0311301_12453467	Not Available	586	Open in IMG/M
3300032261\|Ga0306920_103563958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149	574	Open in IMG/M
3300032770\|Ga0335085_11867647	Not Available	613	Open in IMG/M
3300032828\|Ga0335080_12010436	Not Available	559	Open in IMG/M
3300032892\|Ga0335081_10392488	Not Available	1789	Open in IMG/M
3300032892\|Ga0335081_10548496	Not Available	1440	Open in IMG/M
3300032892\|Ga0335081_10937706	Not Available	1016	Open in IMG/M
3300033289\|Ga0310914_10072448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2901	Open in IMG/M
3300033290\|Ga0318519_10415914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Plantactinospora → unclassified Plantactinospora → Plantactinospora sp. BB1	802	Open in IMG/M
3300033822\|Ga0334828_064963	Not Available	965	Open in IMG/M
3300034124\|Ga0370483_0335951	Not Available	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.33%
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.17%
Freshwater	Environmental → Aquatic → Freshwater	9.17%
Peat	Environmental → Terrestrial → Peat	9.17%
Sediment	Environmental → Aquatic → Sediment	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.50%
Loam	Environmental → Terrestrial → Soil → Loam	5.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.17%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027043	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033822	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1005174841	3300004091	Bog Forest Soil	VTGHTTLTTLHPGHDVAYLTSGQHAGGCAGAMSYYTASGEP
Ga0070661_1010549791	3300005344	Corn Rhizosphere	VTTLATLHSGHDVAYFLREREAGGCVGAMSYYTATGEPPGV
Ga0070713_1024125371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LRQVLLWWPIVTTLTSLHSGHDVAYFLRERESGGCVGAMSYYTASGEPPG
Ga0070698_1009948431	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VPSWWLSVSTVTTLHAGHDVAYLTSGRHAGGCAGAMSYYTASG
Ga0075017_1003062471	3300006059	Watersheds	VTTITTLHAGHDVRYLTSGDAHGGNAGAMRYYTASG
Ga0066659_117125182	3300006797	Soil	VSTNVTLHAGHDVAYFTHGQHRGGCAGAMSYYTAAGE
Ga0116218_15303591	3300009522	Peatlands Soil	MTLHAGHDVAYLTSGQHAGGCAGAMSYYTASGEPPGQWAGKGA
Ga0116215_12205311	3300009672	Peatlands Soil	VTLHVGHDVAYFTSGQGRGGCAGAMSYYTTAGEPPGQWA
Ga0116216_100727401	3300009698	Peatlands Soil	VAVTTNVTLHAGHDVAYFTFGQGHGGCAGAMSYYTAAGEPPGEW
Ga0116216_104378762	3300009698	Peatlands Soil	VSTNVTLHPGYDVAYFTSGRGRGGCAGAMSYYTAA
Ga0116216_108922771	3300009698	Peatlands Soil	VTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPP
Ga0116217_101099441	3300009700	Peatlands Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQ
Ga0116217_101286522	3300009700	Peatlands Soil	VAGVPPSGVAVTTNVTLHAGHDVAYFTFGQGHGGCAGAMSYYTAAGEPPGQ*
Ga0116217_104915561	3300009700	Peatlands Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQW
Ga0126380_114916301	3300010043	Tropical Forest Soil	MTTLKAGHDVRYFTQGSCAGGCAGAMSYYTAEGEPPGQWAGTGAATL
Ga0134062_107424291	3300010337	Grasslands Soil	VSANVTLHAGHDVAYFTHGQGRGGCAGAMSYYTAAGEPPG
Ga0126377_133158411	3300010362	Tropical Forest Soil	VSTNVTLHAGHDVAYFTRGQHSGGCAGAMSYYTEAGEPPGEWTG
Ga0134128_124939261	3300010373	Terrestrial Soil	MSTNVTLHAGHEVAYFTRGQSRGGCAGAMSYYTAAGEPPGQ
Ga0136449_1001780051	3300010379	Peatlands Soil	VTAISTVHAGHDVAYLTAGQDAGGCVGAMSYYTAA
Ga0136449_1030200131	3300010379	Peatlands Soil	VTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPG
Ga0136449_1046222992	3300010379	Peatlands Soil	VTTITTIHPGHDVAYLTSGQHAGGCVGAMSYYTATG
Ga0137383_112163381	3300012199	Vadose Zone Soil	VSANVTLHAGHDVAYFTRGQHRGGCAGAMSYYTAAGEP
Ga0137366_101181381	3300012354	Vadose Zone Soil	MITTFHPGHDVAYLTAVQHAGGCVGAMSYYTASGEPPGQWA
Ga0137385_109593901	3300012359	Vadose Zone Soil	VTTNVTLHAGHDVAYFTRGKGRGGCDGAMSYYTAAGEPP
Ga0126369_135270662	3300012971	Tropical Forest Soil	MTTLKVGHDVRYFTQGSCAGGCAGAMSYYTESGEPPGRWYG
Ga0182030_102530814	3300014838	Bog	VATNVTLHAGHDIAYLTAGQGAGGCAGAMSYYTAGGEPPGQWAGKG
Ga0182041_114226292	3300016294	Soil	VSTNVTLHAGHDVAYFTSGQGHGGCAGAMSYYTAAGEPPGQWAG
Ga0182033_115385831	3300016319	Soil	VTTNVTLHAGHDVAYFTRGRDAGGCAGAMSYYTAARE
Ga0182033_119330282	3300016319	Soil	MSTVTTLHAGHDVAYLTSGQHAAGCAGAMSYYTASGEPPG
Ga0182040_109582661	3300016387	Soil	VSTNVTLHNGHDVAYFTSGQNRGGCAGAMSYYTAAGEPPGEWAGKGA
Ga0182039_117804911	3300016422	Soil	VTTLVTLRAGHDVAYFTRGSCTGGCVGAMSYYTASGEPPGQ
Ga0187802_103456301	3300017822	Freshwater Sediment	VSTNVTLHVGHDVAYFTSGQGYGGCAGAMSYYTAAAEPPGEWAGKGAAAL
Ga0187818_103995091	3300017823	Freshwater Sediment	VTTNVTLHRGHDVAYLTSGQHRGGCTGAMSYYTATGEPRGVGREGRR
Ga0187818_104778301	3300017823	Freshwater Sediment	VSTNVTLHAGHDVAYFTAGQGAGGCAGAMSYYTAAG
Ga0187820_10451931	3300017924	Freshwater Sediment	VSTNVTLHAGHDVAYFTAGQGSGGCAGAMSYYTAAGEPPGQ
Ga0187814_103361832	3300017932	Freshwater Sediment	VSTNVTLHVGHDVAYFTAGQGRGGCAGAMSYYTAAGEPPGQWAGRGAA
Ga0187808_100097923	3300017942	Freshwater Sediment	MSTVTTLHAGHDVAYLTSGQRAGGCVGAMSYYTASGEPPGHGPAKLPRRSV
Ga0187808_102980722	3300017942	Freshwater Sediment	VAYFTRGSCAGGCVGAMSYYTAAGEPPGQWAGQGAASL
Ga0187819_103407182	3300017943	Freshwater Sediment	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAG
Ga0187817_109833482	3300017955	Freshwater Sediment	VSTVTTLHAGHDVAYLTAGQHAGGCAGAMSYYTAA
Ga0187780_101815551	3300017973	Tropical Peatland	MSTNVTLHAGNDVAYFTAGQGRGGCAGAMCYYAADGEPPGKWAGKGAAA
Ga0187780_109942561	3300017973	Tropical Peatland	VSTVTTLHAGHDVAYLTAGQHAGGCAGAMSYYTACGEPPGQWAG
Ga0187805_104300402	3300018007	Freshwater Sediment	VTTNVTLHAGHDVAYFTRGQDAGGCAGAMSYYTAAGEPPGQWAGTAARKSL
Ga0210398_110771691	3300021477	Soil	VATNVTLHAGHDIAYLTSGQDRGGCAGAMSYYTAAGEPP
Ga0208356_11130772	3300025504	Arctic Peat Soil	VATNVTLHAGHDVAYLTSGQGSGGCAGAMSYYTAAGEPPGQ
Ga0207700_116689451	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSANVTLHAGHDVAYFTRGQGRGGCAGAMSYYTAAGEPPGEWA
Ga0207702_112843611	3300026078	Corn Rhizosphere	MTTNTTLHAGHDVRYLTSGNAHGGNAGAMRYYTASGEPPGRW
Ga0207800_10346711	3300027043	Tropical Forest Soil	MSTVTTMHAGHDVAYLTAGQHAGGCAGAMSYYTAAGEPPGQ
Ga0207777_10903821	3300027330	Tropical Forest Soil	VTTITTLHAGHDVAYLTSGQRAGGCVGAMSYYTASGEPPGQ
Ga0209274_102800531	3300027853	Soil	VSTNVTLHVGHDVAYFTSGQHRGGCAGAMSYYTAAGEPPGEWAGKG
Ga0209590_110553391	3300027882	Vadose Zone Soil	VSTNVTLHAGHDVAYFTSGQGCGGCAGAMFYYTAAGEPPGQWAGKGA
Ga0209415_101738151	3300027905	Peatlands Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQWAG
Ga0209061_10427123	3300027968	Surface Soil	VTVNVTLHAGHDVAYFTRGQDAGGCAGAMSYYTASGEPPGVW
Ga0307312_105785971	3300028828	Soil	VSTNVTLHAGHDVAYFTSGQHRGGCAGAMSYYTAAGEPP
Ga0307277_105724871	3300028881	Soil	VSANVTLHAGHDVAYFTSGPGRGGCAGAMSYYTAAGEPP
Ga0311340_102553844	3300029943	Palsa	VSTNVTLHAGHDIAYLTSGQGSGGCAGAMSYYTAAGE
Ga0311352_102597931	3300029944	Palsa	VSTLVTLHAGHDVAYFTSGQDRGGCAGAMSYYTAA
Ga0311338_1004781311	3300030007	Palsa	MSTNVTLYAGHDVAYFTRGQGRGGCAGAMSYYTAGGEPPGHWAGKGAA
Ga0302177_101481211	3300030053	Palsa	LSTVVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPAGEW
Ga0311353_107711871	3300030399	Palsa	MSTLVTLHKGHDVAYFTSGQDRGGCAGAMSYYTAAGEPP
Ga0310037_100413071	3300030494	Peatlands Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQWAGKGA
Ga0311370_121732911	3300030503	Palsa	MSTLVTLHAGHDVAYFTSGQDRGGCAGAMSYYTAAG
Ga0311372_115404521	3300030520	Palsa	VSTVVTLHAGHDVAYFTSGQDRGGCAGAMSYYTAAGEPP
Ga0311357_113495371	3300030524	Palsa	VATNVTLHAGHDIAYLTSGQGSGGCAGAMSYYTAAG
Ga0311354_108085601	3300030618	Palsa	MSTNVTLYAGHDVAYFTRGQGRGGCAGAMSYYTAG
Ga0302324_1027624991	3300031236	Palsa	VSTMTTLKAGHDVRYFTQGSCVGGCVGAMTYYTASGEPPGLWSGKAAASLSLS
Ga0310915_112525911	3300031573	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEWAGKGA
Ga0318561_106331251	3300031679	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQWAGK
Ga0318561_107229781	3300031679	Soil	VSTVTTLHAGHDVAYLTAGQHAGGCAGAMSYYTAAGEPPGQ
Ga0318561_107398711	3300031679	Soil	VTANVTLHAGHDVAYFTSGQGRGGCTGAMSYYTAAGEPPGQWAGK
Ga0318493_101433883	3300031723	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEWAGK
Ga0318493_106070792	3300031723	Soil	VTTNVTLHAGHDVAYFTRGQDAGGCAGAMSYYTAAGEPPGQWAGTA
Ga0318492_100059709	3300031748	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEWAG
Ga0318492_103463432	3300031748	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGAMSYYTASGEPPGQWAGKG
Ga0318554_107133372	3300031765	Soil	VSTNVTLHDGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQ
Ga0318509_101957402	3300031768	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEP
Ga0318521_103889981	3300031770	Soil	VSTNVTLHAGHDVAYFTSGQHRGGCVGAMSYYTAAAAVLA
Ga0318521_107074921	3300031770	Soil	VTTVTTLHAGHDVAYLTAGRHAGGCAGAMSYYTAAG
Ga0318546_106498511	3300031771	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGAMSYYTASGEPP
Ga0318529_100196111	3300031792	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEWVGKGA
Ga0318565_105216222	3300031799	Soil	VTTNTTLHAGHDVRYLTSGNAHGGNAGAMRYYTASGEPPGRW
Ga0318565_105318761	3300031799	Soil	VTTNVTLHAGHDVAYFTRGQDAGGCAGAMSYYTAAGEPPG
Ga0318567_104285481	3300031821	Soil	VSTNVTLHDGHDVAYFIAGRGRGGCAGAMSYYTAAGDPPGEWA
Ga0318564_105211821	3300031831	Soil	VSTVTTLHAGHDVAYLTAGQHAGGCAGAMSYYTAAGEPPGQW
Ga0318499_102345871	3300031832	Soil	VSTNVTLHSGHDVAYFTSGQHRGGCAGAMSYYTAAGEPLG
Ga0318511_103644941	3300031845	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPAGHW
Ga0318511_105392972	3300031845	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPP
Ga0318512_105272442	3300031846	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEWAGKGAAG
Ga0318527_104533631	3300031859	Soil	MTTLKVGHDVRYFTQGSCAGGCVGAMSYYTESGEP
Ga0306919_103955251	3300031879	Soil	VATNVTLHAGHDVAYFTRGQGRGGCAGAMSYYTAAGEPPGEWAGKGA
Ga0306919_108655661	3300031879	Soil	VSTNVTLHDGHDVAYFIAGRGRGGCAGAMSYYTAAGEPP
Ga0306925_115399971	3300031890	Soil	VSTNVTLHQGHDVAYFTRGQDRGGCAGAMSYYTAAGEPPGEW
Ga0318522_104273361	3300031894	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAALA
Ga0318551_105426281	3300031896	Soil	VTTVTTLHAGHDVAYLTAGRHAGGCAGAMSYYTAAGEPPGEWAG
Ga0318551_106302441	3300031896	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPG
Ga0306926_129123711	3300031954	Soil	VAYLTAGRHAGGCAGAMSYYTAAGEPPGQWAGKGAAA
Ga0318559_105105031	3300032039	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGQWVGK
Ga0318549_105542931	3300032041	Soil	VSTNVTLHAGHDVAYFTRGQGHGGCAGAMSYYTAAGEPPGEWA
Ga0318556_107576291	3300032043	Soil	VTTITTLHAGHDVAYLTAGQHGGGCAGAMSYYTASGEPPGE
Ga0318558_105367631	3300032044	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGAMSYYTASGEPPG
Ga0318504_104873352	3300032063	Soil	VATNVTLHAGHDVAYFTRGQGRGGCAGAMSYYTAAGEPPG
Ga0318510_103774021	3300032064	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGAMSYYTASGEPPGEWA
Ga0318514_102729272	3300032066	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGTMSYYTAAGEPPG
Ga0318514_104783501	3300032066	Soil	VTTITTLHAGHDVAYLTAGQHAGGCAGAMSYYTASGEPPGEWAGK
Ga0318553_107740971	3300032068	Soil	VTTNVTLHAGHDVAYFTRGQDAGGCAGAMSYYTAAGEPPGQWAGAAARKWL
Ga0318518_104000531	3300032090	Soil	MSTVTTLHAGHDVAYLTSGQEAGGCAGAMSYYTAAGEPPGQWAGN
Ga0311301_1003461115	3300032160	Peatlands Soil	VAGVPPSGVAVTTNVTLHAGHDVAYFTFGQGHGGCAGAMSYYTAAGEPPGQ
Ga0311301_106258472	3300032160	Peatlands Soil	VSANVTLHQGHDVAYFTRGQHRGGCAGAMSYYTVARQPP
Ga0311301_117871961	3300032160	Peatlands Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAA
Ga0311301_124534672	3300032160	Peatlands Soil	VATNVTLHAGHDIAYLTSGQGSGGCAGTMSYYTAAGEPPG
Ga0306920_1035639581	3300032261	Soil	VTTNVTLHQGHDVAYFTSGQGRGGCAGAMSYYTAAGEPP
Ga0335085_118676471	3300032770	Soil	VSTNVTLHAGHDVAYFTRGQHRGGCAGAMSYYTAAGEPP
Ga0335080_120104361	3300032828	Soil	VTTNVTLHAGHDVAYFTRGQEAGGCASAMSYYTAAREPPGQ
Ga0335081_103924881	3300032892	Soil	VSTNVTLHAGHDVAYFTRGQHRGGCAGAMSYYTAAG
Ga0335081_105484963	3300032892	Soil	VSTNVTLHAGHDVAYFTSGQHRGGCAGAMSYYTAAAEPPGQWAGKG
Ga0335081_109377061	3300032892	Soil	VSTNVTLHAGHDVSYFTSGQHRGGCAGAMSYYTAAAEPPGQWAGKGAAGL
Ga0310914_100724485	3300033289	Soil	VSTNVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPPGEW
Ga0318519_104159144	3300033290	Soil	VSTVTTMHAGHDVAYLTAGQHAGGCAGAMSYYTAAGEPPG
Ga0334828_064963_3_143	3300033822	Soil	MSTLVTLHAGHDVAYFTSGQGRGGCAGAMSYYTAAGEPAGEWAGKGA
Ga0370483_0335951_1_138	3300034124	Untreated Peat Soil	MITTLHAGHDVRYLTSGDAHGGNAGAMRYYTASGEPPGQWAGKGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073301

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences