Metagenome / Metatranscriptome Family F073271

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073271
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	58 residues
Representative Sequence	MNEVEIPLKITGIGAIKAELRELKGAIADATDPESIAKLSQRAGELKDKLSDANDA
Number of Associated Samples	99
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.53 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	89.17 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (30.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (20.833 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (46.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.62% β-sheet: 0.00% Coil/Unstructured: 52.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04466	Terminase_3	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.83 %
Unclassified	root	N/A	29.17 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	40.83 %
cellular organisms	root	All Organisms → cellular organisms	30.00 %
Unclassified	root	N/A	29.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.00 %
Unclassified	root	N/A	29.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	15.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	15.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	15.83 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	15.83 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15.83 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15.83 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15.83 %
Flavobacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.17 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	28.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15.83 %
Flavobacterium daemonense	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium daemonense	0.83 %
Flavobacterium nitrogenifigens	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium nitrogenifigens	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002408\|B570J29032_109468494	Not Available	787	Open in IMG/M
3300002408\|B570J29032_109928296	All Organisms → Viruses → Predicted Viral	2949	Open in IMG/M
3300002835\|B570J40625_100622868	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	983	Open in IMG/M
3300002835\|B570J40625_101498622	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	554	Open in IMG/M
3300003277\|JGI25908J49247_10016491	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2241	Open in IMG/M
3300003491\|JGI25924J51412_1068936	Not Available	540	Open in IMG/M
3300003497\|JGI25925J51416_10163548	Not Available	502	Open in IMG/M
3300004240\|Ga0007787_10279999	Not Available	823	Open in IMG/M
3300005517\|Ga0070374_10224867	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	963	Open in IMG/M
3300005527\|Ga0068876_10643731	Not Available	571	Open in IMG/M
3300005940\|Ga0073913_10004340	All Organisms → Viruses → Predicted Viral	1869	Open in IMG/M
3300005955\|Ga0073922_1011900	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1015	Open in IMG/M
3300006802\|Ga0070749_10375009	Not Available	788	Open in IMG/M
3300007171\|Ga0102977_1218494	All Organisms → Viruses → Predicted Viral	1963	Open in IMG/M
3300007346\|Ga0070753_1320462	Not Available	551	Open in IMG/M
3300007972\|Ga0105745_1203774	Not Available	623	Open in IMG/M
3300007974\|Ga0105747_1056699	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1165	Open in IMG/M
3300008107\|Ga0114340_1174815	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	758	Open in IMG/M
3300008110\|Ga0114343_1138143	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	794	Open in IMG/M
3300008113\|Ga0114346_1064077	All Organisms → Viruses → Predicted Viral	3171	Open in IMG/M
3300008266\|Ga0114363_1018979	All Organisms → Viruses → Predicted Viral	3061	Open in IMG/M
3300008267\|Ga0114364_1091554	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	969	Open in IMG/M
3300008339\|Ga0114878_1075430	All Organisms → Viruses → Predicted Viral	1358	Open in IMG/M
3300008450\|Ga0114880_1030765	All Organisms → Viruses → Predicted Viral	2398	Open in IMG/M
3300008450\|Ga0114880_1200602	Not Available	669	Open in IMG/M
3300009075\|Ga0105090_10124741	All Organisms → Viruses → Predicted Viral	1610	Open in IMG/M
3300009075\|Ga0105090_10597421	Not Available	670	Open in IMG/M
3300009085\|Ga0105103_10513698	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	674	Open in IMG/M
3300009085\|Ga0105103_10931201	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium nitrogenifigens	511	Open in IMG/M
3300009085\|Ga0105103_10956063	Not Available	505	Open in IMG/M
3300009149\|Ga0114918_10502466	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	649	Open in IMG/M
3300009165\|Ga0105102_10103562	All Organisms → Viruses → Predicted Viral	1339	Open in IMG/M
3300009165\|Ga0105102_10813906	Not Available	533	Open in IMG/M
3300009168\|Ga0105104_10329087	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	843	Open in IMG/M
3300009169\|Ga0105097_10381166	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	783	Open in IMG/M
3300009183\|Ga0114974_10262404	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1029	Open in IMG/M
3300009183\|Ga0114974_10292697	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	960	Open in IMG/M
3300011268\|Ga0151620_1043229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1501	Open in IMG/M
3300012352\|Ga0157138_1072921	Not Available	538	Open in IMG/M
3300013005\|Ga0164292_10168974	All Organisms → Viruses → Predicted Viral	1583	Open in IMG/M
3300013005\|Ga0164292_10983209	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	527	Open in IMG/M
3300017700\|Ga0181339_1015920	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	856	Open in IMG/M
3300017701\|Ga0181364_1055451	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	617	Open in IMG/M
3300017707\|Ga0181363_1042356	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	833	Open in IMG/M
3300017716\|Ga0181350_1096107	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	734	Open in IMG/M
3300017716\|Ga0181350_1156587	Not Available	529	Open in IMG/M
3300017747\|Ga0181352_1127136	Not Available	684	Open in IMG/M
3300017754\|Ga0181344_1157461	Not Available	647	Open in IMG/M
3300017766\|Ga0181343_1203237	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	542	Open in IMG/M
3300017766\|Ga0181343_1232903	Not Available	500	Open in IMG/M
3300017777\|Ga0181357_1335312	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	506	Open in IMG/M
3300017778\|Ga0181349_1288028	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	536	Open in IMG/M
3300017785\|Ga0181355_1114552	All Organisms → Viruses → Predicted Viral	1107	Open in IMG/M
3300017785\|Ga0181355_1377037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium daemonense	517	Open in IMG/M
3300019784\|Ga0181359_1215203	Not Available	608	Open in IMG/M
3300020084\|Ga0194110_10966248	Not Available	502	Open in IMG/M
3300020161\|Ga0211726_10072332	Not Available	545	Open in IMG/M
3300021140\|Ga0214168_1086728	Not Available	685	Open in IMG/M
3300021962\|Ga0222713_10713319	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	570	Open in IMG/M
3300022200\|Ga0196901_1232812	Not Available	578	Open in IMG/M
3300022204\|Ga0224496_10323295	Not Available	629	Open in IMG/M
3300023179\|Ga0214923_10084556	All Organisms → Viruses → Predicted Viral	2215	Open in IMG/M
3300024515\|Ga0255183_1025277	All Organisms → Viruses → Predicted Viral	1421	Open in IMG/M
3300024571\|Ga0256302_1150814	Not Available	547	Open in IMG/M
3300025687\|Ga0208019_1122992	Not Available	765	Open in IMG/M
3300025889\|Ga0208644_1075101	All Organisms → Viruses → Predicted Viral	1755	Open in IMG/M
3300026415\|Ga0256298_1005176	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1590	Open in IMG/M
3300027129\|Ga0255067_1016241	All Organisms → Viruses → Predicted Viral	1113	Open in IMG/M
3300027156\|Ga0255078_1112803	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	502	Open in IMG/M
3300027563\|Ga0209552_1096722	Not Available	794	Open in IMG/M
3300027578\|Ga0255075_1031993	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	992	Open in IMG/M
3300027631\|Ga0208133_1003408	All Organisms → Viruses → Predicted Viral	4983	Open in IMG/M
3300027683\|Ga0209392_1068823	All Organisms → Viruses → Predicted Viral	1142	Open in IMG/M
3300027693\|Ga0209704_1068480	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	987	Open in IMG/M
3300027743\|Ga0209593_10279641	Not Available	576	Open in IMG/M
3300027772\|Ga0209768_10007237	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6468	Open in IMG/M
3300027792\|Ga0209287_10328969	Not Available	587	Open in IMG/M
3300027804\|Ga0209358_10214985	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	987	Open in IMG/M
3300027808\|Ga0209354_10169840	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	888	Open in IMG/M
3300027808\|Ga0209354_10281242	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	664	Open in IMG/M
3300027899\|Ga0209668_10213697	All Organisms → Viruses → Predicted Viral	1206	Open in IMG/M
3300027972\|Ga0209079_10132501	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	854	Open in IMG/M
(restricted) 3300028569\|Ga0247843_1172373	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	859	Open in IMG/M
3300029697\|Ga0256301_1007865	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1668	Open in IMG/M
3300029699\|Ga0255233_1005153	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2292	Open in IMG/M
3300031673\|Ga0307377_10486472	Not Available	901	Open in IMG/M
3300031746\|Ga0315293_11004159	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	594	Open in IMG/M
3300031772\|Ga0315288_11564940	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	540	Open in IMG/M
3300031885\|Ga0315285_10647862	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	690	Open in IMG/M
3300031951\|Ga0315904_10315569	All Organisms → Viruses → Predicted Viral	1457	Open in IMG/M
3300031963\|Ga0315901_10279561	All Organisms → Viruses → Predicted Viral	1394	Open in IMG/M
3300032046\|Ga0315289_10386400	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1399	Open in IMG/M
3300032046\|Ga0315289_11022165	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	691	Open in IMG/M
3300032053\|Ga0315284_10833709	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1062	Open in IMG/M
3300032116\|Ga0315903_10083675	All Organisms → Viruses → Predicted Viral	3102	Open in IMG/M
3300032156\|Ga0315295_11097098	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	785	Open in IMG/M
3300032173\|Ga0315268_10461588	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1249	Open in IMG/M
3300032173\|Ga0315268_12486634	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	531	Open in IMG/M
3300033994\|Ga0334996_0324159	Not Available	755	Open in IMG/M
3300033995\|Ga0335003_0160403	All Organisms → Viruses → Predicted Viral	1110	Open in IMG/M
3300033996\|Ga0334979_0391227	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	770	Open in IMG/M
3300034061\|Ga0334987_0191150	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1450	Open in IMG/M
3300034061\|Ga0334987_0709398	Not Available	575	Open in IMG/M
3300034064\|Ga0335001_0219775	All Organisms → Viruses → Predicted Viral	1056	Open in IMG/M
3300034068\|Ga0334990_0021747	All Organisms → Viruses → Predicted Viral	3408	Open in IMG/M
3300034068\|Ga0334990_0527431	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	627	Open in IMG/M
3300034071\|Ga0335028_0041029	All Organisms → Viruses → Predicted Viral	3168	Open in IMG/M
3300034102\|Ga0335029_0232732	All Organisms → Viruses → Predicted Viral	1201	Open in IMG/M
3300034103\|Ga0335030_0912096	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	504	Open in IMG/M
3300034106\|Ga0335036_0116301	All Organisms → Viruses → Predicted Viral	1942	Open in IMG/M
3300034106\|Ga0335036_0156359	All Organisms → Viruses → Predicted Viral	1618	Open in IMG/M
3300034106\|Ga0335036_0156360	All Organisms → Viruses → Predicted Viral	1618	Open in IMG/M
3300034200\|Ga0335065_0524642	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	704	Open in IMG/M
3300034200\|Ga0335065_0709641	Not Available	573	Open in IMG/M
3300034279\|Ga0335052_0200637	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1148	Open in IMG/M
3300034283\|Ga0335007_0529314	Not Available	699	Open in IMG/M
3300034283\|Ga0335007_0699627	Not Available	567	Open in IMG/M
3300034355\|Ga0335039_0127638	All Organisms → Viruses → Predicted Viral	1454	Open in IMG/M
3300034356\|Ga0335048_0269140	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	900	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.50%
Terrestrial	Environmental → Terrestrial	2.50%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	88.33%
Marine	Environmental → Aquatic → Marine	9.17%
Soil	Environmental → Terrestrial → Soil	2.50%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	38.33%
Lentic	Environmental → Aquatic → Freshwater → Lentic	27.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	11.67%
River	Environmental → Aquatic → Freshwater → River	6.67%
Coastal	Environmental → Aquatic → Marine → Coastal	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.50%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.67%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.67%
Sand	Environmental → Terrestrial → Soil → Sand	1.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.83%
Sediment	Environmental → Aquatic → Marine → Sediment	0.83%
Clay	Environmental → Terrestrial → Soil → Clay	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.83%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	23.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	11.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.50%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.83%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.83%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.83%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	20.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	20.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	11.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.50%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	6.67%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.17%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.17%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.33%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.33%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.50%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.67%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.67%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.67%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	1.67%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.83%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.83%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.83%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.83%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.83%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005940	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14	Environmental	Open in IMG/M
3300005955	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300007171	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008339	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300012352	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300017700	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020560	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300021140	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024515	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d	Environmental	Open in IMG/M
3300024571	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026415	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027129	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h	Environmental	Open in IMG/M
3300027156	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027578	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h	Environmental	Open in IMG/M
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028569 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m	Environmental	Open in IMG/M
3300029697	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029699	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034068	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031	Environmental	Open in IMG/M
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034279	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163	Environmental	Open in IMG/M
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29032_1094684942	3300002408	Freshwater	MNEVEIPLKLGGIAAIKAELRDLKGQIADATDPETMTRLAQRAGELKDQ
B570J29032_1099282961	3300002408	Freshwater	MNEVEIPLKLGGIAAIKAELRDLKGQIADATDPETMTRLAQRAGELKDQLKDAN
B570J40625_1006228682	3300002835	Freshwater	MNEVEIPLKITGIGEIKAELRELKGAIADATDPEQIAQLSARAGEL
B570J40625_1014986222	3300002835	Freshwater	MNEVEIPLKISGIAAIKAELRDLKGQIAESTDPETMTVLAERAGELKDQLKDANEQ
JGI25908J49247_100164912	3300003277	Freshwater Lake	MNEVEIPIKVTGLGAIKAELRDLKGQIADATDPAEIARLSQAAGVLKDRISDANDS
JGI25924J51412_10689361	3300003491	Freshwater Lake	MNEVEIPLKLGGIGAIKAELRDLKGQIANATDAESMAKLAMRAGELKDQLQDANEAVN
JGI25925J51416_101635482	3300003497	Freshwater Lake	MNEVEIPLKLGGIGAIKAELRDLKGQIANATDAESMAKLAMRAGELKDQLQDANQAVNT
Ga0007787_102799991	3300004240	Freshwater Lake	MNTVEIPLKISGLAEIKAELRALKGELANATDPKEMAELAQRAGELKDQIADANEAANTF
Ga0070374_102248672	3300005517	Freshwater Lake	MNEVEIPIRVSGLGAIKAELKALKGEIANATDPADIARLSQAAGELSDKIKDANEAVAVFAT
Ga0068876_106437312	3300005527	Freshwater Lake	MNEVEIPLKLSGIGAIKAELKSLKGAIADATDPEDIARLAARAGELKDQLADANEAVNTFATGSK
Ga0073913_100043401	3300005940	Sand	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLAARAGELKDQLADANDAVNVF
Ga0073922_10119002	3300005955	Sand	MNEIEVPLKITGIGAIKKELRDLKGEIANATDPQALADLTKRAGQ
Ga0070749_103750091	3300006802	Aqueous	MNQVEIPIVIQGIGAMRAELRELKGAIAEATDPEQMAELSARAGELKDKISDANDAANVFASGSKFEQ
Ga0102977_12184942	3300007171	Freshwater Lake	MNQVEIPLKLTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGEL
Ga0070753_13204621	3300007346	Aqueous	MNQVEIPIVIQGIGAMRAELRELKGAIAEATDPEQMAELSARAGELKD
Ga0105745_12037742	3300007972	Estuary Water	MNEVEIPLKITGIGAIKAELRELKGAIADATDPETIAKLSQRAGELKDKLSDANEAVNNFATGS
Ga0105747_10566991	3300007974	Estuary Water	MNEVEIPLKISGIAAIKAELRDLKGQIAESTDPETMTVLAERAGALKDQLKDANEQVNVFASG
Ga0114340_11748151	3300008107	Freshwater, Plankton	MNEVEIPIKLGGIGAIKAELRELKGAIAEATDPADIARLSQRAGELKDQLSDANEAVNT
Ga0114343_11381431	3300008110	Freshwater, Plankton	MNEVEIPIKLGGIGAIKAELRELKGAIAEATDPEDIARLSQRAGELKDQLSDANEAVNTFATGSKFEQVSN
Ga0114346_10640771	3300008113	Freshwater, Plankton	MNEVEIPLKLGGIGAIKAELKSLKGAIAEATDPEDIARLSQRAGELKDQLSDANEAVNTFAT
Ga0114363_10189791	3300008266	Freshwater, Plankton	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQVAQLSARAGELKDQLKDANDAVNVFASGSKFEQVSNS
Ga0114364_10915542	3300008267	Freshwater, Plankton	MNEVEIPLKITGIGEIKAELRELKGAIADATDPEQIAQLSARAGELKDKINDANDAVNVFSSGS
Ga0114878_10754302	3300008339	Freshwater Lake	MNEIEVPLKITGIGAIKKELRDLKGEIANATDSESIARLSQRAGEL
Ga0114880_10307652	3300008450	Freshwater Lake	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQVAQLSARA
Ga0114880_12006021	3300008450	Freshwater Lake	MNEIEVPLKITGIGAIKKELRELKGEIANATDSEQVAKLSQRAGQLKDQLADANEQVNIFASGS
Ga0105090_101247412	3300009075	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRELKGQIADATDPEVMTALAQRAGELKDRLKDANE
Ga0105090_105974212	3300009075	Freshwater Sediment	MNEVEIPLKITGIGAMKAELRELKGAIANATDPEAMEQLARRAGEVADRLKDANEQVAV
Ga0105103_105136981	3300009085	Freshwater Sediment	MNEVEIPLKITGIGAMKAELRELKGAIANATDPEAMEQLARRAGEVADRLKDAN
Ga0105103_109312012	3300009085	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPAVMTALAQRAGELKDRLK
Ga0105103_109560632	3300009085	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRELKGQIADATDPEVMTALAQRAGELKDRLKDANEQIAVFTTG
Ga0114918_105024661	3300009149	Deep Subsurface	MNEVEIPLKIGGIAAMKAELRELQGAIANATDPETMTRLAQRAGELTDQLKDANQQIAVFATGSKFE
Ga0105102_101035622	3300009165	Freshwater Sediment	MNEVEIPLKLGGIGAIKAELKDLKGQIADATDPETMTRLAQRAGELKDQLKDANEQVNVFATGS
Ga0105102_108139062	3300009165	Freshwater Sediment	MNEIEVPLKITGIGAIKKELRDIKGALAEATDPKEMERLAQAAGQL
Ga0105104_103290872	3300009168	Freshwater Sediment	MNEVEIPLKLGGIGAIKAELKDLKGQIADATDPETMTRLAERAGEL
Ga0105097_103811662	3300009169	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPAVMTALAQRAGELKDRLKD
Ga0114974_102624041	3300009183	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFATG
Ga0114974_102926971	3300009183	Freshwater Lake	MNEVEIPLKITGIGAMKAELRDLKGAIADATDPAQMAELSARAGELKDKIGDANAAVNVFASGSK
Ga0151620_10432291	3300011268	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLK
Ga0157138_10729212	3300012352	Freshwater	MNEVEIPLKITGIGAMKAELRDLKGAIADATDPAQIAALSAKAGELKDKISDANDA
Ga0164292_101689741	3300013005	Freshwater	MNEVEIPLKLGGIAAIKAELRDLQGQIANAGDADTMTELAQRAG
Ga0164292_109832091	3300013005	Freshwater	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEA
Ga0181339_10159202	3300017700	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFATGSKFEQV
Ga0181364_10554512	3300017701	Freshwater Lake	MNEVEIPLKISGIGAIKAELKALKGEIANATDPADILRLSQAAGVLKDQIQDANDAVNVFSSGSKFEQASMGFA
Ga0181363_10423561	3300017707	Freshwater Lake	MNEVEIPLKITGIGEIKAELRELKGAIADATDPEQIAQLSARAGELKDKIND
Ga0181350_10961072	3300017716	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFATGSKFEQVS
Ga0181350_11565871	3300017716	Freshwater Lake	MNEVEIPLKITGISAMKAELRDLKGAIADATDPTQMAELSARAGELKDRIGDF
Ga0181352_11271362	3300017747	Freshwater Lake	MNEIEVPLKITGINAIKTELKAIKSALADATDPKEMERLAAAAGELKDQLADVNE
Ga0181344_11574612	3300017754	Freshwater Lake	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLSARAGELKDQIS
Ga0181343_12032371	3300017766	Freshwater Lake	MNEVEIPLKLGGIGAIKAELRELKGAIANATDPEDIARLAQRAGELKDQLQDANEAVNTFASGSKFEQVGN
Ga0181343_12329032	3300017766	Freshwater Lake	MNEVEIPIKLGGIGAIKAELRELKGAIANATDPEDIARLAQRAGELKDQLQDANEAVNTFASGSKFEQVGN
Ga0181357_13353121	3300017777	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVN
Ga0181349_12880281	3300017778	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFATGSKFEQVSNG
Ga0181355_11145522	3300017785	Freshwater Lake	MNQVEIPLKVTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLKDANEQVAIFNSGSR
Ga0181355_13770372	3300017785	Freshwater Lake	MNEVEIPLKITGISAMKAELRELKGAIADATDPAAIVALSQRAGELKDRIGDAND
Ga0181359_12152032	3300019784	Freshwater Lake	MNEVEIPLKLGGIGAIKAELRDLKGQIANATDAESMAKLAMRAGELKDQLQDANEAVNTF
Ga0194110_109662481	3300020084	Freshwater Lake	MNEVEIPLKITGIGAIKSELRELKGAIADATDPEQIAQLSAKAGELADKIKDANE
Ga0211726_100723322	3300020161	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLAARAGELKDQLADANDAVNAFASGSKFEQMS
Ga0208852_10207261	3300020560	Freshwater	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDAN
Ga0214168_10867281	3300021140	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLAAKAGELKDQLAD
Ga0222713_107133191	3300021962	Estuarine Water	MNEVQIPLKLTGIGAIKAELKALKGQIADATDPEVIAKLSQKAGELADKLKDVNE
Ga0196901_12328121	3300022200	Aqueous	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPESLRQLSMRAGELKDQLK
Ga0224496_103232952	3300022204	Sediment	MNQVEIPLKLTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLKDANEQVAIFNSGSRFE
Ga0214923_100845562	3300023179	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGELANATDPKEMAALAQRAGELSDRLKDANEQ
Ga0255183_10252772	3300024515	Freshwater	MNQVEIPLKLTGIGAIKKELRDLKGQLANATDPKEMAALAQRAGELSD
Ga0256302_11508142	3300024571	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLKDANE
Ga0208019_11229921	3300025687	Aqueous	MNEVEIPLKIGGIAAIKAELRDLQGQIANATDPETMTKLAQRAGELKDQLKDANEQIAVF
Ga0208644_10751011	3300025889	Aqueous	MNTVEIPLKISGLAEIKAELRALKGELANATDPKEMAELAQRAGELKDQIADANEAANTFATGSKFEQ
Ga0256298_10051762	3300026415	Freshwater	MNQVEIPIVIQGIGAMRAELRELKGAIAEATDPEQMAELSARAGELKDKISD
Ga0255067_10162411	3300027129	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLKD
Ga0255078_11128031	3300027156	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGELANATDPKEMARLAQKAGELSDKLK
Ga0209552_10967221	3300027563	Freshwater Lake	MNEVEIPLKLGGIGAIKAELRDLKGQIANATDAESMAKLAMRAGELKDQL
Ga0255075_10319931	3300027578	Freshwater	MNQVEIPLKVTGIGAIKKELRDLKGELANATDPKEMARLAQKAGEL
Ga0208133_10034081	3300027631	Estuarine	MNSVEIPIVVSGLGAIKAELRALKGEIANATDPADIARLSQEAGVLKDKIADANEAVNVFATGSKFEQ
Ga0209392_10688232	3300027683	Freshwater Sediment	MNEVEIPLKITGIGAMKAELRELKGAIANATDPEAMEQLARRAGEVADRLKDANEQVAVFTA
Ga0209704_10684802	3300027693	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRELKGQIADATDPEVMTALAQRAGELKDRLKDANEQIAVFTTGSK
Ga0209593_102796412	3300027743	Freshwater Sediment	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPESLRQLSMRAGELKDQLKDANE
Ga0209768_100072371	3300027772	Freshwater Lake	MNEVDIPLKITGIGAMKAELRELKGAIADATDPAAIVALSQRAGELK
Ga0209287_103289692	3300027792	Freshwater Sediment	MNEVEIPLKLGGLAAIKAELRDLKGQIANAADAETMTKLAQRAGELKDQLKDANEQIAVF
Ga0209358_102149851	3300027804	Freshwater Lake	MNQVEIPLKITGIGAIKKELRDLKGQIANATDPEQMTKLAQRAGELADQLKDANEQVAIFNSGSRF
Ga0209354_101698402	3300027808	Freshwater Lake	MNEVEIPLKISGIGAIKAELKALKGEIANATDPADILRLSQAAGVLKDQIQDANDAVNVFSSGSKFEQASMG
Ga0209354_102812421	3300027808	Freshwater Lake	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFATGSKF
Ga0209668_102136971	3300027899	Freshwater Lake Sediment	MNEIEVPIKITGIGAIKKELRDLKGEIANATDSEQIMKLSQRAGELKDQLADAN
Ga0209079_101325011	3300027972	Freshwater Sediment	MNEVEIPLKITGIGAMKAELRELKGAIANATDPEAMEQLARRAGEVADRLKDANEQV
(restricted) Ga0247843_11723731	3300028569	Freshwater	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPETMRALAQRAGELKDKLKDA
Ga0256301_10078651	3300029697	Freshwater	MNQVEIPIVIQGIGAMRAELRELKGAIAEATDPEQMAELSARAGELKDKISDANDA
Ga0255233_10051531	3300029699	Freshwater	MNQVEIPIVIQGIGAMRAELRELKGAIAEATDPEQMAELSARAGELKDKISDAN
Ga0307377_104864722	3300031673	Soil	MNEVEIPIKIGGIAAMKAELRELQGAIANATDPETMTRLAQRAGELTDQLKDANEQIAVFATGSK
Ga0315293_110041592	3300031746	Sediment	MNEVEIPLKVTGIGAIKAELRELKGAIADATDPESIAKLSQRAGELKDKLSDANEAVNNFATGSKFEQVSNS
Ga0315288_115649401	3300031772	Sediment	MNEVEIPIRVSGLGAIKAELKALKGEIANATDPADIARLSQEAGVLSDKIKDANEAVAVFASYILSDST
Ga0315285_106478622	3300031885	Sediment	MNEVEIPIKVSGLGAIKAELRELKGEIANATDPAEIARLSMAAGELKDKISDANEAVNVFAT
Ga0315904_103155692	3300031951	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQVAQLSARAGELKDQL
Ga0315901_102795612	3300031963	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQVAQLSARAGELKDQLKDANDAVNVFAS
Ga0315289_103864002	3300032046	Sediment	MNEVEIPLKVTGLGAIKAELRDLKGQIANATDPADIARLSKAAGALKDQINDANESVKNF
Ga0315289_110221651	3300032046	Sediment	MNEVEIPLKISGIGAIKAELKALKGEIANATDPADILRLSQAAGVLKDQIQDANEAVNVFASGSK
Ga0315284_108337092	3300032053	Sediment	MNEIEVPLKITGIGAIKKELRDLKGELANATDSESIAKLSQRAGQLKDQLADAN
Ga0315903_100836753	3300032116	Freshwater	MNEVEIPLKLSGIGAIKAELKSLKGAIADATDPEDIARLAARAGELKDQLADANEAVNTFATGSKFE
Ga0315295_110970981	3300032156	Sediment	MNEVEIPLKVTGLGAIKAELRDLKGQIANATDPADIARLSKAAGALKDQIN
Ga0315268_104615882	3300032173	Sediment	MNEVEIPLKVTGLGAIKAELRDLKGQIANATDPADIARLSKAAGALKDQINDANESVKNFSTGSQFEQVNNQIRG
Ga0315268_124866342	3300032173	Sediment	MNEVEIPLKVTGLGAIKAELRDLKGQIANATDPADIARLSKAAGALKDQINDANESVKNFSTGSQ
Ga0334996_0324159_619_753	3300033994	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLAARAGE
Ga0335003_0160403_963_1109	3300033995	Freshwater	MNEVEIPLKLGGIAAIKAELRDLQGQIANAGDADTMTELAQQAGALKDQ
Ga0334979_0391227_602_769	3300033996	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPESIAKLSQRAGELKDKLSDANDA
Ga0334987_0191150_1_186	3300034061	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLSARAGELKDKLTDANDAVNVFAS
Ga0334987_0709398_386_574	3300034061	Freshwater	MNEIEVPLKITGIGAIKKELRELKGEIANATDPEALASLTQRAGELKDQLADANEQVNIFASG
Ga0335001_0219775_1_159	3300034064	Freshwater	MNEVEIPLKITGIGEIKAELRELKGAIADATDPEQIAQLSARAGELKDKLADA
Ga0334990_0021747_1_201	3300034068	Freshwater	MNEVEIPLKISGIGAIKAELRALKGEIANATDPESMAALAMKAGELSDKLKDANEAVATFATGSKFE
Ga0334990_0527431_496_627	3300034068	Freshwater	MNEVEIPLKLGGIAAIKAELRDLQGQIANAGDADTMTELAQQAG
Ga0335028_0041029_1_192	3300034071	Freshwater	MNEVEIPLKLGGIAEIKAELRALQGQIANAGDADTMTELAQQAGKLKDQIKDANEQVAIFATGS
Ga0335029_0232732_1_174	3300034102	Freshwater	MNEIEVPLKITGIGAIKKELRELKGEIANATDSEQIAKLSQRAGELKDQLADANEQVN
Ga0335030_0912096_302_502	3300034103	Freshwater	MNEVEIPLKLGGIGAIKAELRDLKGQIADATDPETMTRLAQRAGELKDQLKDANEQVAVFTTGSKFE
Ga0335036_0116301_1766_1942	3300034106	Freshwater	MNEVEIPLKLGGIGAIKAELKSLKGAIAEATDPADIARLSQRAGELKDQLSDANEAVNT
Ga0335036_0156359_2_160	3300034106	Freshwater	MNEVEIPLKLGGIGAIKAELKSLKGAIAEATDPEDIARLSQRAGELKDQLADA
Ga0335036_0156360_2_160	3300034106	Freshwater	MNEVEIPIKLGGIGAIKAELKSLKGAIAEATDPEDIARLSQRAGELKDQLADA
Ga0335065_0524642_495_704	3300034200	Freshwater	MNEVEIPLKISGIGAIKAELRALKGEIANATDPESMAALDMKAGELSDKLKDANEAVATFATGSKFEGIS
Ga0335065_0709641_3_188	3300034200	Freshwater	MNEVEIPLKLGGIAAIKAELRDLKGQIADATDPETMTRLAQRAGELKDQLKDANEQVNVFAT
Ga0335052_0200637_2_217	3300034279	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPEQIAQLAAKAGELKDQLADANDAVNVFASGSKFEQVSNS
Ga0335007_0529314_3_155	3300034283	Freshwater	MNEVEIPLKITGIGAIKAELRELKGAIADATDPESIAKLSQRAGELKDKLA
Ga0335007_0699627_1_138	3300034283	Freshwater	MNEVEIPLKITGIGAIKAELRDLKGQIADATDPESLRQLSMRAGEL
Ga0335039_0127638_1285_1452	3300034355	Freshwater	MNEVEIPLKLGGIAAIKAELRDLQGQIANAGDADTMTELAQRAGELKDQIKDANEQ
Ga0335048_0269140_3_221	3300034356	Freshwater	MNEVEIPLKLGGIGAIKAELKSLKGAIAEATDPADIARLSQRAGELKDQLSDANEAVNTFATGSKFEQVSNSL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters