Metagenome / Metatranscriptome Family F073230

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073230
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	59 residues
Representative Sequence	MTAFQDDVGAATEAYAAYVNAPRGTLASDEQQLFDQDLVRARAAMERAWLEAKPVREPG
Number of Associated Samples	75
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.33 %
% of genes near scaffold ends (potentially truncated)	16.67 %
% of genes from short scaffolds (< 2000 bps)	71.67 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (28.333 % of family members)
Environment Ontology (ENVO)	Unclassified (28.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (37.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.43% β-sheet: 0.00% Coil/Unstructured: 50.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF05496	RuvB_N	10.83
PF00106	adh_short	5.83
PF00196	GerE	3.33
PF00563	EAL	3.33
PF16193	AAA_assoc_2	2.50
PF00990	GGDEF	2.50
PF12840	HTH_20	2.50
PF07690	MFS_1	2.50
PF13419	HAD_2	2.50
PF03706	LPG_synthase_TM	1.67
PF07883	Cupin_2	1.67
PF05638	T6SS_HCP	1.67
PF00392	GntR	1.67
PF14824	Sirohm_synth_M	1.67
PF06026	Rib_5-P_isom_A	0.83
PF02415	Chlam_PMP	0.83
PF12697	Abhydrolase_6	0.83
PF09851	SHOCT	0.83
PF08241	Methyltransf_11	0.83
PF13417	GST_N_3	0.83
PF01872	RibD_C	0.83
PF00082	Peptidase_S8	0.83
PF00224	PK	0.83
PF13384	HTH_23	0.83
PF13466	STAS_2	0.83
PF00486	Trans_reg_C	0.83
PF04542	Sigma70_r2	0.83
PF13410	GST_C_2	0.83
PF03137	OATP	0.83
PF13561	adh_short_C2	0.83
PF03976	PPK2	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	10.83
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	3.33
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	3.33
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	3.33
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	3.33
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	1.67
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	1.67
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.83
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.83
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.83
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.83
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
All Organisms	root	All Organisms	48.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
cellular organisms	root	All Organisms → cellular organisms	48.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.67 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5.00 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Chloroflexi bacterium ADurb.Bin325	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin325	0.83 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.83 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
unclassified Streptosporangiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales	0.83 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.83 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.83 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Chloroflexi bacterium ADurb.Bin325	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin325	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.83 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.83 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.83 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Chloroflexi bacterium ADurb.Bin325	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin325	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.67 %
Syntrophaceae bacterium PtaB.Bin038	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	0.83 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.83 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.83 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Chloroflexi bacterium ADurb.Bin325	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin325	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000893\|AP72_2010_repI_A001DRAFT_1066316	Not Available	568	Open in IMG/M
3300001546\|JGI12659J15293_10008201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2986	Open in IMG/M
3300001867\|JGI12627J18819_10240067	Not Available	729	Open in IMG/M
3300005435\|Ga0070714_101167990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	751	Open in IMG/M
3300005435\|Ga0070714_101726832	Not Available	611	Open in IMG/M
3300005436\|Ga0070713_100121437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2292	Open in IMG/M
3300005524\|Ga0070737_10390662	Not Available	538	Open in IMG/M
3300005532\|Ga0070739_10164922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1162	Open in IMG/M
3300005532\|Ga0070739_10375112	Not Available	666	Open in IMG/M
3300005538\|Ga0070731_10860595	Not Available	601	Open in IMG/M
3300005891\|Ga0075283_1042023	Not Available	771	Open in IMG/M
3300005921\|Ga0070766_10872549	Not Available	615	Open in IMG/M
3300006028\|Ga0070717_10035672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4028	Open in IMG/M
3300006028\|Ga0070717_10053448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3329	Open in IMG/M
3300006086\|Ga0075019_10870575	Not Available	577	Open in IMG/M
3300006806\|Ga0079220_11866246	Not Available	532	Open in IMG/M
3300009522\|Ga0116218_1439039	Not Available	582	Open in IMG/M
3300009683\|Ga0116224_10633599	Not Available	511	Open in IMG/M
3300009698\|Ga0116216_10017252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4534	Open in IMG/M
3300010361\|Ga0126378_12366333	Not Available	606	Open in IMG/M
3300010371\|Ga0134125_10086270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3492	Open in IMG/M
3300010396\|Ga0134126_10868307	Not Available	1016	Open in IMG/M
3300012176\|Ga0153952_1076009	Not Available	740	Open in IMG/M
3300012177\|Ga0153943_1133969	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300014165\|Ga0181523_10314877	Not Available	882	Open in IMG/M
3300014165\|Ga0181523_10416566	Not Available	747	Open in IMG/M
3300016750\|Ga0181505_10324961	Not Available	610	Open in IMG/M
3300017924\|Ga0187820_1265319	Not Available	556	Open in IMG/M
3300017924\|Ga0187820_1288513	Not Available	537	Open in IMG/M
3300017937\|Ga0187809_10030634	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300017937\|Ga0187809_10253532	Not Available	637	Open in IMG/M
3300017939\|Ga0187775_10362611	Not Available	589	Open in IMG/M
3300017948\|Ga0187847_10331932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	832	Open in IMG/M
3300017966\|Ga0187776_10937071	Not Available	632	Open in IMG/M
3300017966\|Ga0187776_11565327	Not Available	508	Open in IMG/M
3300017974\|Ga0187777_10026792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3688	Open in IMG/M
3300017994\|Ga0187822_10173873	Not Available	704	Open in IMG/M
3300017994\|Ga0187822_10350659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M
3300018033\|Ga0187867_10187882	Not Available	1178	Open in IMG/M
3300018038\|Ga0187855_10813977	Not Available	545	Open in IMG/M
3300018058\|Ga0187766_10137471	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300018060\|Ga0187765_10009976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4250	Open in IMG/M
3300018060\|Ga0187765_10019760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3185	Open in IMG/M
3300018060\|Ga0187765_10061191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1964	Open in IMG/M
3300020582\|Ga0210395_10094363	Not Available	2210	Open in IMG/M
3300021358\|Ga0213873_10018816	Not Available	1593	Open in IMG/M
3300021362\|Ga0213882_10161771	Not Available	919	Open in IMG/M
3300021374\|Ga0213881_10235871	Not Available	811	Open in IMG/M
3300021374\|Ga0213881_10253043	Not Available	782	Open in IMG/M
3300021377\|Ga0213874_10032113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1523	Open in IMG/M
3300021384\|Ga0213876_10007603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5882	Open in IMG/M
3300021384\|Ga0213876_10041277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2438	Open in IMG/M
3300021384\|Ga0213876_10059203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2022	Open in IMG/M
3300021384\|Ga0213876_10339986	Not Available	798	Open in IMG/M
3300021388\|Ga0213875_10014909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3786	Open in IMG/M
3300021388\|Ga0213875_10086640	Not Available	1461	Open in IMG/M
3300021388\|Ga0213875_10197774	All Organisms → cellular organisms → Bacteria → Terrabacteria group	945	Open in IMG/M
3300021388\|Ga0213875_10294259	All Organisms → cellular organisms → Bacteria → Terrabacteria group	768	Open in IMG/M
3300021388\|Ga0213875_10307656	Not Available	750	Open in IMG/M
3300021388\|Ga0213875_10336636	Not Available	716	Open in IMG/M
3300021401\|Ga0210393_11084657	Not Available	647	Open in IMG/M
3300021403\|Ga0210397_10310832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160	Open in IMG/M
3300021474\|Ga0210390_10654274	Not Available	878	Open in IMG/M
3300021953\|Ga0213880_10226120	Not Available	533	Open in IMG/M
3300025906\|Ga0207699_10387695	All Organisms → cellular organisms → Bacteria → Proteobacteria	993	Open in IMG/M
3300025915\|Ga0207693_10529122	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300025928\|Ga0207700_10441570	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300025929\|Ga0207664_10638950	Not Available	956	Open in IMG/M
3300027574\|Ga0208982_1040888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	916	Open in IMG/M
3300027773\|Ga0209810_1112370	Not Available	1200	Open in IMG/M
3300027895\|Ga0209624_10085188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2050	Open in IMG/M
3300027895\|Ga0209624_10229178	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1235	Open in IMG/M
3300027895\|Ga0209624_10778913	Not Available	629	Open in IMG/M
3300028731\|Ga0302301_1097763	Not Available	755	Open in IMG/M
3300030046\|Ga0302305_1269362	Not Available	595	Open in IMG/M
3300030520\|Ga0311372_12451945	Not Available	588	Open in IMG/M
3300031525\|Ga0302326_11235636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1024	Open in IMG/M
3300031680\|Ga0318574_10337282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium ADurb.Bin325	878	Open in IMG/M
3300031715\|Ga0307476_10089505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2159	Open in IMG/M
3300031718\|Ga0307474_10610350	Not Available	860	Open in IMG/M
3300031765\|Ga0318554_10828118	Not Available	517	Open in IMG/M
3300032066\|Ga0318514_10753835	Not Available	518	Open in IMG/M
3300032074\|Ga0308173_10026394	Not Available	3979	Open in IMG/M
3300032074\|Ga0308173_10589607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1006	Open in IMG/M
3300032261\|Ga0306920_104178083	Not Available	521	Open in IMG/M
3300032770\|Ga0335085_10035718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6864	Open in IMG/M
3300032770\|Ga0335085_10206887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2398	Open in IMG/M
3300032770\|Ga0335085_10297378	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300032770\|Ga0335085_10529839	Not Available	1339	Open in IMG/M
3300032770\|Ga0335085_11585925	Not Available	678	Open in IMG/M
3300032770\|Ga0335085_12342907	Not Available	533	Open in IMG/M
3300032783\|Ga0335079_10040204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5370	Open in IMG/M
3300032805\|Ga0335078_10061857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5499	Open in IMG/M
3300032805\|Ga0335078_10748751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300032805\|Ga0335078_11012212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	983	Open in IMG/M
3300032805\|Ga0335078_11131346	Not Available	912	Open in IMG/M
3300032828\|Ga0335080_10160331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2488	Open in IMG/M
3300032892\|Ga0335081_10102841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4240	Open in IMG/M
3300032892\|Ga0335081_12064390	Not Available	606	Open in IMG/M
3300032895\|Ga0335074_10001790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29108	Open in IMG/M
3300032895\|Ga0335074_10012832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11763	Open in IMG/M
3300032895\|Ga0335074_10059791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5203	Open in IMG/M
3300032895\|Ga0335074_10198785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2448	Open in IMG/M
3300032895\|Ga0335074_10241934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2136	Open in IMG/M
3300032895\|Ga0335074_10823887	Not Available	860	Open in IMG/M
3300032896\|Ga0335075_10016908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10870	Open in IMG/M
3300032896\|Ga0335075_10048675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5923	Open in IMG/M
3300032896\|Ga0335075_10115821	Not Available	3456	Open in IMG/M
3300032896\|Ga0335075_10531916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300032896\|Ga0335075_10934541	All Organisms → cellular organisms → Bacteria → Terrabacteria group	789	Open in IMG/M
3300032896\|Ga0335075_11501358	Not Available	561	Open in IMG/M
3300032898\|Ga0335072_10062058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4958	Open in IMG/M
3300032898\|Ga0335072_10194851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	2411	Open in IMG/M
3300032898\|Ga0335072_10435247	Not Available	1390	Open in IMG/M
3300032898\|Ga0335072_11347692	Not Available	621	Open in IMG/M
3300032955\|Ga0335076_10006684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11635	Open in IMG/M
3300032955\|Ga0335076_10598213	Not Available	985	Open in IMG/M
3300033134\|Ga0335073_11323331	All Organisms → cellular organisms → Bacteria → Terrabacteria group	710	Open in IMG/M
3300033158\|Ga0335077_12168407	Not Available	511	Open in IMG/M
3300034268\|Ga0372943_0499911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	793	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.33%
Host-Associated	Host-Associated	11.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.50%
Aquatic	Environmental → Aquatic	10.83%
Plants	Host-Associated → Plants	10.00%
Fungi	Host-Associated → Fungi	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.83%
Freshwater	Environmental → Aquatic → Freshwater	10.00%
Roots	Host-Associated → Plants → Roots	9.17%
Peat	Environmental → Terrestrial → Peat	3.33%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	3.33%
Mycelium	Host-Associated → Fungi → Mycelium	1.67%
Sediment	Environmental → Aquatic → Sediment	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	35.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.67%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.00%
Unclassified	Host-Associated → Plants → Roots → Unclassified	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	3.33%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	35.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.00%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	3.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	28.33%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.33%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	3.33%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012176	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027574	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300030046	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A001DRAFT_10663163	3300000893	Forest Soil	MSPHDVSGAVEAYAAYLNAPRGILPIDEQVLFDQDLAKARAAMERAWLEATP
JGI12659J15293_100082012	3300001546	Forest Soil	MNPFGADVGIATEAYAAYLNAPRGVLDREEQVLFDQDMARARAAMERAWLESTPVHERNAD*
JGI12627J18819_102400671	3300001867	Forest Soil	MNAYPNDVGAEIEAYAAYLNAPRGILDSDEQILFDQDLLKARAAMERAWLEAKPVRERQ*
Ga0070714_1011679902	3300005435	Agricultural Soil	MKANRDDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVRERQ*
Ga0070714_1017268322	3300005435	Agricultural Soil	MRALPVSVAAATEAYASYLNTPRGILDADEQRLHDEDLAKARAAMERAWLEAMPVRPA*
Ga0070713_1001214372	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNANPDDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVRERP*
Ga0070737_103906622	3300005524	Surface Soil	MSLFPDDVGAATEAYAAYLNAPRGVLDSDEQQLFDQDLHKARAAMERAWLEAKPVATPPGYQP*
Ga0070739_101649223	3300005532	Surface Soil	MTPFPQDVGGAVEAYAAYLNAPRGVLDHEEQVLFDEDMARARAAMERAWLESTPVQGGAPGGSSL*
Ga0070739_103751121	3300005532	Surface Soil	MSLFADDIGAATEAYAAYLNAPRGVLDSDEQHLFDQDLGKARAAMERAWLE
Ga0070731_108605953	3300005538	Surface Soil	VNPPFNLAEATEAYAAYLNAPRGVLGAAEQQLLDEDLAKARAALETAWLQAKPVRRPG*
Ga0075283_10420231	3300005891	Rice Paddy Soil	MMEAMNANPEDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVCERP*
Ga0070766_108725491	3300005921	Soil	MNAPSDLAAATEAYAAYLNAPRGVFDAAEQQMFDEDLAKARAALETAWLQAKPVRQTG*
Ga0070717_100356725	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNAYPGDIGAETEAYAAYLNAPRNVLDHDEQALFDQDLLKARAAMERAWLEAKPVREIK*
Ga0070717_100534485	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNPHPDDVGAEIEAYAAYLNAPRGILDHDEQMLFDQDLLKARAAMERAWLEAKPVRDVK*
Ga0075019_108705752	3300006086	Watersheds	MTAFPFQDDVGAATEAYAAYVNAPRGALASDEQQLFDQDLVRARAAMERA*
Ga0079220_118662463	3300006806	Agricultural Soil	MTPYSHDVSGAVEAYAAYLNAPRGILDREEQLLFDEDMARARAAMERAWLESTPIRELAP
Ga0116218_14390393	3300009522	Peatlands Soil	MTPLHDDVGAATEAYAAYVNAPRRALDSDEQQLFDQDLVRARATMEQAWLEAKPVRE
Ga0116224_106335992	3300009683	Peatlands Soil	MTPLHDDVGASTEAYAAYVNAPRPALDSDEQQLFDPDLVRARATMEQAWLEAKPVREPT*
Ga0116216_100172525	3300009698	Peatlands Soil	MTPLHDDVGAATEAYAAYVNAPRPALDSDEQQLFDPDLVRARATMEQAWLEAKPVREPT*
Ga0126378_123663331	3300010361	Tropical Forest Soil	MGYRGVIMKAFSNDVGGAVEAYAAYLNAPRGFLSSDEQALFDEDMARARAAMERAWLEATPVQGDTP*
Ga0134125_100862704	3300010371	Terrestrial Soil	MNPNPDDIGAEIEAYAAYLNAPRGILDSDEQVLFDQDLVKARAAMERAWLEAKPVRERP*
Ga0134126_108683071	3300010396	Terrestrial Soil	MEPGTVANGSDEGDAMNANPDDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVRERP*
Ga0153952_10760092	3300012176	Attine Ant Fungus Gardens	MKRSSRDVGKATEAYAAYLNAPRGVLDGEEQDLFDEDMARARAAMELAWLESTPVRDSNPD*
Ga0153943_11339691	3300012177	Attine Ant Fungus Gardens	MKRSSRDVGKATEAYAAYLNAPRGVLDGEEQDLFDEDMARARAAMELAWLESTPVRESNPD*
Ga0181523_103148772	3300014165	Bog	MTPAFDDVGLATEAYAAYVNAPRGVLDSDEQQLFDEDLAKARAAMELAWLEAKPVRLKK*
Ga0181523_104165662	3300014165	Bog	MTPEFDDVGLATEAYAAYLNAPRGVLDSEEQQLFDEDLAKARAAMERAWLEAKPVRATT*
Ga0181505_103249612	3300016750	Peatland	MTPAFDDVGLATEAYAAYVNAPRGVLDSDEQQLFDEDLAKARAAMELAWLEAKPVRLKK
Ga0187820_12653191	3300017924	Freshwater Sediment	MNAPFDLAQATEAYAAYLNAPRGVFDAAEQQMLDEDLSKARAALETAWLNAKPVRQPD
Ga0187820_12885131	3300017924	Freshwater Sediment	MTTLRPDVGGAVEAYAAYLNAPRGILDHEEQALFDEDLARARAAMERAWLESTPVQGNRGFVGGA
Ga0187809_100306342	3300017937	Freshwater Sediment	MNANPDDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVRERP
Ga0187809_102535322	3300017937	Freshwater Sediment	MSRVPHDVGVATEAYAAYLHAPRGVLDSEEQVLFDEDMARARAAMERAWLESTPVRDATG
Ga0187775_103626112	3300017939	Tropical Peatland	RPSPHDVSGAVEAYAADLNAPRGCLDREQQLLFDEDMARARAAVERVWLESAPVRETPGE
Ga0187847_103319321	3300017948	Peatland	MTPPFDDVGRATEVYAAYVNAPRGILDSDQQQLFDEDLAKARATMERVWLEAIPVRASA
Ga0187776_109370712	3300017966	Tropical Peatland	MNRFSHDVSGAVEAYAAYLNAPRGFLSTEEQALFDEDMARARAAMERAWLEATPV
Ga0187776_115653271	3300017966	Tropical Peatland	MRPSPHDVSGAVEAYAADLNAPRGCLDREQQLLFDEDMARARAAMERVWLESAPVRETPG
Ga0187777_100267927	3300017974	Tropical Peatland	MTPLKDDVGAATVAYAAYVNAPRGALDSEEQQLFDQDLVRARAAMERAWLEAKPVCEPT
Ga0187822_101738732	3300017994	Freshwater Sediment	DAQGAEHMTTLRPDVGGAVEAYAAYLNAPRGILDHEEQALFDEDLARARAAMERAWLESTPVQGNRGFVGGA
Ga0187822_103506592	3300017994	Freshwater Sediment	MTPLHDDVGAATEAYAAYVNAPGRALDSDEQQLFDQDFVRARATMEQAWLEAKPVREPT
Ga0187867_101878822	3300018033	Peatland	MSPAVNDVGLATEAYAAYVNAPRDVLDIDEQQLFDEDLAKARAAMERAWLEAKPVRARRA
Ga0187855_108139772	3300018038	Peatland	MTPPFDDVGQATEAYAAYVNTPRGILDSDEQELFDEDLAKARAAMERAWLRAIPVRRSP
Ga0187766_101374712	3300018058	Tropical Peatland	MTPLKDDVGAATVAYAAYVNAPRGALDSEEQQLFDQDLVRARAAMERAWLEAKPVCEPR
Ga0187765_100099768	3300018060	Tropical Peatland	MTRLKDDVGAATVAYAAYVNAPRGALDSEEQQLFDQDLVRARAAMERAWLEAKPVCEPT
Ga0187765_100197603	3300018060	Tropical Peatland	MTPLHDDVGAATEAYAAYVNAPRGALNSDEQQLFDQDLVRARAAMERAWLEAKPVRDPTA
Ga0187765_100611911	3300018060	Tropical Peatland	MTPLKDDVGAATVAYAAYVNAPRGALDSEEQQLFDQDLVRARAAMERAWL
Ga0210395_100943635	3300020582	Soil	MNAPSDLAAATEAYAAYLNAPRGVFDAAEQQMFDEDLAKARAALETAWLQAKPVRQTG
Ga0213873_100188164	3300021358	Rhizosphere	MRTFPEDVGALTEAYAAYLNAPRGMLDHDEQQLLDQDLVKAKAAMELAWLEAKPVQEAR
Ga0213882_101617712	3300021362	Exposed Rock	MTPLPHDISAATEAYAAYLNAPRDVLDTDEQQLFDQDLLKARAAMERAWLEAKPVREPR
Ga0213881_102358711	3300021374	Exposed Rock	MRSASKILAAETVAYAAYVNAPRGVLGCDEQQLFDEDLARARAAMERAWLEAKPVRDAT
Ga0213881_102530431	3300021374	Exposed Rock	MTPLSHDVGGAIEAYAAYLNAPRGILDSEEQLLFDEDMARARAAMERAWLESTPVRERRP
Ga0213874_100321132	3300021377	Plant Roots	MSPSPRDVSWAVEAYAAYLNAPRGILDSEQQLLFDEDMARARAAMERAWLESTPVREVTA
Ga0213876_100076033	3300021384	Plant Roots	MTPFPPDVGGAVEAYAAYLNAPRGVLGHEEQLLFDEDMARARAAMERAWLESTPVQGAPGGRTR
Ga0213876_100412772	3300021384	Plant Roots	MTAFSHDVSEAVEAYAAYLNAPRGLLDREEQLLFDQDMARARAAMERAWLETTPVREPSR
Ga0213876_100592031	3300021384	Plant Roots	MTPLSHDVGGAIEAYAAYLNAPRGILDSEEQLLFDEDMARARAAMERAWL
Ga0213876_103399861	3300021384	Plant Roots	MTPSHQDVGGTVEAYAAYLNAPRGILDREEQVLFDEDMARARAAMERAWLESTPVQGVGSGGRGM
Ga0213875_100149092	3300021388	Plant Roots	MTAFRNDVSGAVEVYAAYLNAPRGILDHEEQLLLDEDLARARAAMERAWLESTPVRDVAT
Ga0213875_100866402	3300021388	Plant Roots	VGVATEAYAAYLNAPRGVLDRDEQTLFDQDLARARAAMELAWLESTPVRDAAGE
Ga0213875_101977743	3300021388	Plant Roots	MTPSHQDVGGTVEAYAAYLNAPRGILDREEQVLFDEDMARARAAMERAWLESTPIREIGPPRT
Ga0213875_102942592	3300021388	Plant Roots	MNRFAHDVGVATEAYAAYLNAPRGVLDIEEQVLFDEDLARARAAMERAWLESTPVRDGGG
Ga0213875_103076562	3300021388	Plant Roots	VPACWGGWLADVSATTEAFAQYLNAPREHLDPEQRDLLEEDTAKARAQMERAWLEATPVR
Ga0213875_103366362	3300021388	Plant Roots	MMNRFSHDVGVATEAYAAYLNAPRGILDSEEQTLFDEDLARARAAMELAWLESTPVRDAVGD
Ga0210393_110846572	3300021401	Soil	MTAFPFQDDVGAATEAYAAYVNAPRGALASDEQQLFDQDLVRARAAMERAWLEAKPVREP
Ga0210397_103108322	3300021403	Soil	MNVFPDDVGAEIEAYAAYLNAPRGILDSDEQILFDQDLLKARAAMERAWLEAKPVRERQ
Ga0210390_106542742	3300021474	Soil	VKSFSQDVGVATEAYAAYLNAPRGVLDREEQVLFDQDMARARAAMERAWLESNPVRDGGA
Ga0213880_102261201	3300021953	Exposed Rock	MSPSPRDVSWAVEAYAAYLNAPRGVLDSEQQLLFDEDMARARAAMERTWLESTPVREVTA
Ga0207699_103876951	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNWNRDDVGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMERAWLEAKPVRERP
Ga0207693_105291222	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNPHPDDVGAEIEAYAAYLNAPRGILDHDEQMLFDQDLLKARAAMERAWLEAKPVRDVK
Ga0207700_104415702	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VGAEIEAYAAYLNAPRGILDHDEQMLFDQDLLKARAAMERAWLEAKPVRDVK
Ga0207664_106389502	3300025929	Agricultural Soil	MNPYSHDIAGAVEAYAAYLNAPRGILSSDEQALFDEDMARARAAMERAWLESTPVLDDRH
Ga0208982_10408882	3300027574	Forest Soil	MNAYPNDVGAEIEAYAAYLNAPRGLLDSDEQVLFDQDLLKARAAMERAWLEAKPVRERT
Ga0209810_11123702	3300027773	Surface Soil	MTPFPQDVGGAVEAYAAYLNAPRGVLDHEEQVLFDEDMARARAAMERAWLESTPVQGGAPGGSSL
Ga0209624_100851884	3300027895	Forest Soil	MNPFGADVGIATEAYAAYLNAPRGVLDREEQVLFDQDMARARAAMERAWLESTPVHERNA
Ga0209624_102291782	3300027895	Forest Soil	MSRLPHDVGVATEAYAAYLNAPRGILDSDEQVLFDEDMARARAAMERAWLEATPVRERNR
Ga0209624_107789131	3300027895	Forest Soil	VKSFSQDVGVATEAYAAYLNAPRGVLDREEQVLFDQDMARARAAMERAWL
Ga0302301_10977631	3300028731	Palsa	MLDDLGAETEAYAAYLNARRGMLDSYEQTLIEEDLGKARAEMERAWLEAKPVRETR
Ga0302305_12693622	3300030046	Palsa	DLGAETEAYAAYLNARRGMLDSYEQTLIEEDLGKARAEMERAWLEAKPVRETR
Ga0311372_124519451	3300030520	Palsa	MLDDVGAETEAYAAYLNARRGVLDSYEQELLDEDLGKARAEMERAWLEAKPVRETR
Ga0302326_112356362	3300031525	Palsa	MMLDDVGAETEAYAAYLNARRGVLDSYEQELLDEDLGKARAEMERAWLEAKPVRETR
Ga0318574_103372822	3300031680	Soil	HGHRPFPQDISGAVEAYAAYLNAPRGILDTDQQMLFDKDMARARAAMERAWVEATPGQDDTPPASACPHLTF
Ga0307476_100895052	3300031715	Hardwood Forest Soil	MTAFQDDVGAATEAYAAYVNAPRGTLASDEQQLFDQDLVRARAAMERAWLEAKPVREPG
Ga0307474_106103501	3300031718	Hardwood Forest Soil	MTAFQDDVGAATEAYAAYVNAPRGTLASDEQQLFDQDLVRARAAMERAWLEAKPVREPS
Ga0318554_108281182	3300031765	Soil	MTAFRHDVSGAVEAYAAYLNAPRGFLDHEEQQLFDEDMARARAAMERAWLEATPVQ
Ga0318514_107538352	3300032066	Soil	MTAFRHDVSGAVEAYAAYLNAPRGFLDHEEQQLFDEDMARARAAMERAWLEATPVQETAP
Ga0308173_100263942	3300032074	Soil	MNANPDDVGAEIEAYAAYLNAPRGILDSDEQILFDQDLLKARAAMERAWLEAKPVRERP
Ga0308173_105896072	3300032074	Soil	MNANPDDIGAEIEAYAAYLNAPRGILDSDEQVLFDQDLLKARAAMELAWLEAKPVRERP
Ga0306920_1041780831	3300032261	Soil	MNAHPGDVGAETEAYAAYLNAPRNVLNHDEQALFDQDLRKARAAMERAWLEAKPVRELK
Ga0335085_100357183	3300032770	Soil	MTPLHDDVGAATEAYAAYVNAPREVLDSDEQRLFDQDVVRARAAMERAWLEAKPVREPT
Ga0335085_102068873	3300032770	Soil	MNAFSNDVGGAVEAYAAYLNAPRGFLSSDQQELFDEDMARARAAMERAWLEATPVQGDTT
Ga0335085_102973782	3300032770	Soil	MIGFHDDVGAATEAYAAYVNAPRGALDPDEQVLFDQDLVRARAAMERAWLEAKPVREKP
Ga0335085_105298392	3300032770	Soil	VNPPFDLAEATEAYAAYLNAPRGVLGAAEQQLLDEDLAKARAALETAWLQAKPVRRPG
Ga0335085_115859252	3300032770	Soil	MPTMNPLPPDVAGAVEAYAAYLNAPRGILDREQQMLFDEDMARARAAMERAWLESTPVRDPGSA
Ga0335085_123429071	3300032770	Soil	NAHRYQFATMTPSHHDVAGAVEAYAAYLNAPRGILDAEEQMLFDEDMARARAAMERAWLESTPIREDAPA
Ga0335079_100402045	3300032783	Soil	MNAFHDDVGATTEAYAAYVNTPRGALDPDEQQLFDQDLVRARAAMERAWLEAKPVREQP
Ga0335078_100618578	3300032805	Soil	MNRFHEDVGAATEAYAAYVNAPRQVLDRDEQLLFDEDLMRARAAMERAWLEAKPVRDAT
Ga0335078_107487511	3300032805	Soil	VGIHIWRMNPLPPDVAGAVEAYAAYLNAPRGILGHEEQALFDEDMARARAAMERAWLESTPVRDPRSA
Ga0335078_110122122	3300032805	Soil	MTPSPHDIAGAVEAYAAYLNAPRGILDAEEQMLFDEDMARARAAMERAWLESTPIREDAP
Ga0335078_111313462	3300032805	Soil	MTGFHDDVGAATEAYAAYVNTPRGALDPDEQQLFDQDLVRARAAMERAWLEAKPVREQP
Ga0335080_101603313	3300032828	Soil	MTGFHDDVGAATEAYAAYVNAPRGALDPDEQQLFDQDLVRARAAMERAWLEAKPVRDQP
Ga0335081_101028413	3300032892	Soil	MIGFHDDVGAATEAYAAYVNAPRGALDPDEQQLFDQDLVRARAAMERAWLEAKPVREQP
Ga0335081_120643902	3300032892	Soil	MTPSPHDVAGAVEAYAAYLNAPRGILDAEEQMLFDEDMARARAAMERAWLESTPIQNPGP
Ga0335074_1000179010	3300032895	Soil	MNRHDVGVATEAYAAYLNAPRGVLDREEQVLFDEDLARARAAMERAWLEATPVREGNPD
Ga0335074_100128326	3300032895	Soil	MSRFSHDVGVATEAYAAYLNAPRGILDTDEQMLFDEDMARARAAMELAWLESTPVRDGNA
Ga0335074_100597916	3300032895	Soil	MSQVPHDVSLATEAYAAYLNAPRGVLDSDEQVLFDEDMARARAAMERAWLESTPVLEGNC
Ga0335074_101987853	3300032895	Soil	MTAFQDDVGAATEAYAAYVNAPRGILASDQQQYFDQDLVRARAAMERAWLEAKPVREPT
Ga0335074_102419343	3300032895	Soil	MNAEPHDVGAATEAYAAYLNAPRGVLNSDEQVLFDQDLVKARAAMERAWLEAKPVRKAA
Ga0335074_108238873	3300032895	Soil	MKIFPDDLGAATEAYAAYLNTPRDVLDSDEQLLFDQDLGKARAAMERAWLEAKTVQEPS
Ga0335075_100169084	3300032896	Soil	MSRSAVDVGVATEAYAAYLNAPRGVLDHDEQMLFDEDMARARAAMERAWLESTPVRKGTG
Ga0335075_100486755	3300032896	Soil	MNAHPDNVGAEIEAYAAYLNAPRGILDSDEQILFDQDLLKARAAMERAWLEAKPVRERP
Ga0335075_101158214	3300032896	Soil	MTPLHDDVGAATEAYAAYLNAPRGILDTDQQDLFDQDMSKARAAMERAWLEAKPVMTPRHRGHD
Ga0335075_105319162	3300032896	Soil	MSRSSADVGFATEAYAAYLNAPRGMLDRDEQMLFDEDMARARAAMERAWLESTPVHEGKR
Ga0335075_109345412	3300032896	Soil	MTAFQDDVGAATEAYAAYVNAPRGTLPSDEQQYFDQDLVRARAAMERAWLEAKPVREPT
Ga0335075_115013582	3300032896	Soil	MSPLHDDIGAATEAYAAYLNTPRGILDTDEQQLFDQDLVKARAAMEQAWLEAKPVATPRRRHD
Ga0335072_100620585	3300032898	Soil	MTAFQNDVGAATEAYAAYVNAPRGTLPSDEQQYFDQDLVRARAAMERAWLEAKPVREPT
Ga0335072_101948513	3300032898	Soil	MTWLNDDVGAATEAYAAYVNAPRGALDPDEQQLFDQDLVRARAAMERAWLEAKPVREQP
Ga0335072_104352472	3300032898	Soil	MTRLSKDVGVATEAYAAYLNAPRGILDRDEQVLFDEDMARARAAMELAWLESTPIREPHG
Ga0335072_113476922	3300032898	Soil	MKAFSNDVGGAVEAYAAYLNAPRGFLSSDEQALFDEDMARARAAMERAWLEATPVQGDTP
Ga0335076_1000668411	3300032955	Soil	MTPLHDDVGAATEAYAAYVNAPRGALNSDEQQLFDQDLVRARAAMERAWLEAKPVREPAA
Ga0335076_105982132	3300032955	Soil	MTAFQNDVGAATEAYAAYVTAPRGTLPSDEQQYFDQDLVRARAAMERAWLEAKPVREPT
Ga0335073_113233312	3300033134	Soil	GARKHQPEVTTMTAFQNDVGAATEAYAAYVNAPRGTLPSDEQQYFDQDLVRARAAMERAWLEAKPVREPT
Ga0335077_121684071	3300033158	Soil	MTGFHDDVGAATEAYAAYVNAPREVLDRDEQLLFDQDLMRARAAMERAWLEAKPVREAT
Ga0372943_0499911_473_652	3300034268	Soil	MNPYPDDVGAEIEAYAAYLNAPRGILDHDEQVLFDQDLLKARAAMERAWLEAKPVREIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073230

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences