Metagenome / Metatranscriptome Family F073204

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073204
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	60 residues
Representative Sequence	MKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ
Number of Associated Samples	93
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.50 %
% of genes near scaffold ends (potentially truncated)	31.67 %
% of genes from short scaffolds (< 2000 bps)	85.83 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (31.667 % of family members)
Environment Ontology (ENVO)	Unclassified (45.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (31.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13419	HAD_2	16.67
PF13458	Peripla_BP_6	6.14
PF02627	CMD	5.26
PF00072	Response_reg	2.63
PF08180	BAGE	1.75
PF13242	Hydrolase_like	1.75
PF00702	Hydrolase	1.75
PF14714	KH_dom-like	0.88
PF07662	Nucleos_tra2_C	0.88
PF01557	FAA_hydrolase	0.88
PF01841	Transglut_core	0.88
PF01464	SLT	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	5.26
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	5.26
COG1972	Nucleoside permease NupC	Nucleotide transport and metabolism [F]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
All Organisms	root	All Organisms	32.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
cellular organisms	root	All Organisms → cellular organisms	32.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.50 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	11.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	11.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9.17 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	11.67 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	6.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.50 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	11.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.67 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	2.50 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.67 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	2.50 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.67 %
unclassified Leptolyngbyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae	2.50 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.50 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.67 %
Leptolyngbyaceae cyanobacterium JSC-12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae → Leptolyngbyaceae cyanobacterium JSC-12	2.50 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig816031	Not Available	551	Open in IMG/M
3300000956\|JGI10216J12902_104544668	Not Available	542	Open in IMG/M
3300000956\|JGI10216J12902_116580330	Not Available	715	Open in IMG/M
3300005206\|Ga0068995_10084955	Not Available	624	Open in IMG/M
3300005338\|Ga0068868_100460702	Not Available	1107	Open in IMG/M
3300005364\|Ga0070673_102369458	Not Available	505	Open in IMG/M
3300005365\|Ga0070688_100462176	Not Available	951	Open in IMG/M
3300005437\|Ga0070710_10032038	All Organisms → cellular organisms → Bacteria → Proteobacteria	2844	Open in IMG/M
3300005439\|Ga0070711_100422749	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005544\|Ga0070686_101711399	Not Available	534	Open in IMG/M
3300005564\|Ga0070664_101204692	Not Available	714	Open in IMG/M
3300005578\|Ga0068854_101453379	Not Available	621	Open in IMG/M
3300006846\|Ga0075430_101211835	Not Available	621	Open in IMG/M
3300006853\|Ga0075420_101539357	Not Available	570	Open in IMG/M
3300006904\|Ga0075424_101828994	Not Available	642	Open in IMG/M
3300006918\|Ga0079216_10917596	Not Available	663	Open in IMG/M
3300007004\|Ga0079218_10520275	Not Available	1059	Open in IMG/M
3300007004\|Ga0079218_13086312	Not Available	562	Open in IMG/M
3300007004\|Ga0079218_13306290	Not Available	546	Open in IMG/M
3300007004\|Ga0079218_13307956	Not Available	546	Open in IMG/M
3300009101\|Ga0105247_11542544	Not Available	543	Open in IMG/M
3300009597\|Ga0105259_1013404	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1638	Open in IMG/M
3300009597\|Ga0105259_1013404	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1638	Open in IMG/M
3300009610\|Ga0105340_1022308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2466	Open in IMG/M
3300010045\|Ga0126311_10238894	Not Available	1343	Open in IMG/M
3300010047\|Ga0126382_11166321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae → Leptolyngbyaceae cyanobacterium JSC-12	687	Open in IMG/M
3300010397\|Ga0134124_10401283	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300010403\|Ga0134123_11664668	Not Available	688	Open in IMG/M
3300011398\|Ga0137348_1076008	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300011399\|Ga0137466_1011165	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300011406\|Ga0137454_1033933	Not Available	757	Open in IMG/M
3300011413\|Ga0137333_1003552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3537	Open in IMG/M
3300011417\|Ga0137326_1136045	Not Available	567	Open in IMG/M
3300011419\|Ga0137446_1101832	Not Available	683	Open in IMG/M
3300011424\|Ga0137439_1137062	Not Available	562	Open in IMG/M
3300011429\|Ga0137455_1013079	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2228	Open in IMG/M
3300011433\|Ga0137443_1017787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1779	Open in IMG/M
3300011435\|Ga0137426_1010353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2148	Open in IMG/M
3300011437\|Ga0137429_1205937	Not Available	614	Open in IMG/M
3300011438\|Ga0137451_1007700	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3145	Open in IMG/M
3300011443\|Ga0137457_1010528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2236	Open in IMG/M
3300011444\|Ga0137463_1032831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1903	Open in IMG/M
3300012035\|Ga0137445_1005942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2064	Open in IMG/M
3300012122\|Ga0137332_1034062	Not Available	594	Open in IMG/M
3300012122\|Ga0137332_1034062	Not Available	594	Open in IMG/M
3300012163\|Ga0137355_1019732	Not Available	1212	Open in IMG/M
3300012168\|Ga0137357_1040838	Not Available	931	Open in IMG/M
3300012212\|Ga0150985_120376509	Not Available	958	Open in IMG/M
3300012469\|Ga0150984_118976992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae → Leptolyngbyaceae cyanobacterium JSC-12	626	Open in IMG/M
3300012892\|Ga0157294_10215938	Not Available	573	Open in IMG/M
3300012960\|Ga0164301_10436878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	927	Open in IMG/M
3300012985\|Ga0164308_10075201	All Organisms → cellular organisms → Bacteria → Proteobacteria	2287	Open in IMG/M
3300012988\|Ga0164306_11038467	Not Available	677	Open in IMG/M
3300014326\|Ga0157380_12187225	Not Available	617	Open in IMG/M
3300014876\|Ga0180064_1025528	Not Available	1142	Open in IMG/M
3300015245\|Ga0137409_10781392	Not Available	790	Open in IMG/M
3300015257\|Ga0180067_1003517	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2340	Open in IMG/M
3300015371\|Ga0132258_13596948	Not Available	1060	Open in IMG/M
3300015372\|Ga0132256_101871707	Not Available	707	Open in IMG/M
3300018055\|Ga0184616_10408425	Not Available	509	Open in IMG/M
3300018083\|Ga0184628_10030474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2692	Open in IMG/M
3300018084\|Ga0184629_10686775	Not Available	516	Open in IMG/M
3300018429\|Ga0190272_10903673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	829	Open in IMG/M
3300018429\|Ga0190272_13043711	Not Available	520	Open in IMG/M
3300018469\|Ga0190270_13263249	Not Available	514	Open in IMG/M
3300018476\|Ga0190274_10411731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1316	Open in IMG/M
3300018476\|Ga0190274_11005523	Not Available	908	Open in IMG/M
3300018476\|Ga0190274_12371367	Not Available	628	Open in IMG/M
3300018476\|Ga0190274_13581038	Not Available	524	Open in IMG/M
3300018481\|Ga0190271_10225568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1887	Open in IMG/M
3300018481\|Ga0190271_11425177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	811	Open in IMG/M
3300018481\|Ga0190271_13151151	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300018481\|Ga0190271_13259155	Not Available	544	Open in IMG/M
3300019377\|Ga0190264_10179778	Not Available	1136	Open in IMG/M
3300019377\|Ga0190264_10179778	Not Available	1136	Open in IMG/M
3300019377\|Ga0190264_10179778	Not Available	1136	Open in IMG/M
3300019377\|Ga0190264_12171495	Not Available	516	Open in IMG/M
3300020027\|Ga0193752_1000113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	107985	Open in IMG/M
3300020027\|Ga0193752_1000408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	42246	Open in IMG/M
3300021445\|Ga0182009_10758818	Not Available	528	Open in IMG/M
3300022756\|Ga0222622_10383682	Not Available	986	Open in IMG/M
3300024181\|Ga0247693_1062096	Not Available	551	Open in IMG/M
3300025935\|Ga0207709_10825111	Not Available	750	Open in IMG/M
3300025936\|Ga0207670_10367387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1143	Open in IMG/M
3300025937\|Ga0207669_11329196	Not Available	611	Open in IMG/M
3300025945\|Ga0207679_11094799	Not Available	731	Open in IMG/M
3300027362\|Ga0208320_1029722	Not Available	633	Open in IMG/M
3300027533\|Ga0208185_1013963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2006	Open in IMG/M
3300027573\|Ga0208454_1113934	Not Available	633	Open in IMG/M
3300028802\|Ga0307503_10096767	Not Available	1249	Open in IMG/M
3300031198\|Ga0307500_10012433	Not Available	1754	Open in IMG/M
3300031226\|Ga0307497_10026047	Not Available	1861	Open in IMG/M
3300031226\|Ga0307497_10086104	Not Available	1193	Open in IMG/M
3300031231\|Ga0170824_122666926	Not Available	519	Open in IMG/M
3300031366\|Ga0307506_10255849	Not Available	668	Open in IMG/M
3300031366\|Ga0307506_10296850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	631	Open in IMG/M
3300031455\|Ga0307505_10069278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1571	Open in IMG/M
3300031731\|Ga0307405_10719371	Not Available	829	Open in IMG/M
3300031854\|Ga0310904_11407189	Not Available	508	Open in IMG/M
3300031903\|Ga0307407_10368011	Not Available	1023	Open in IMG/M
3300032144\|Ga0315910_10058422	All Organisms → cellular organisms → Bacteria → Proteobacteria	2806	Open in IMG/M
3300032144\|Ga0315910_10804274	Not Available	731	Open in IMG/M
3300032144\|Ga0315910_11246336	Not Available	581	Open in IMG/M
3300032144\|Ga0315910_11260504	Not Available	577	Open in IMG/M
3300032157\|Ga0315912_10062836	All Organisms → cellular organisms → Bacteria → Proteobacteria	2926	Open in IMG/M
3300032157\|Ga0315912_10383215	Not Available	1112	Open in IMG/M
3300032157\|Ga0315912_10383215	Not Available	1112	Open in IMG/M
3300032157\|Ga0315912_10539583	Not Available	928	Open in IMG/M
3300032157\|Ga0315912_10539583	Not Available	928	Open in IMG/M
3300032180\|Ga0307471_102951540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → unclassified Leptolyngbyaceae → Leptolyngbyaceae cyanobacterium JSC-12	604	Open in IMG/M
3300032205\|Ga0307472_100576174	Not Available	988	Open in IMG/M
3300032770\|Ga0335085_10889312	Not Available	972	Open in IMG/M
3300033004\|Ga0335084_10141293	All Organisms → cellular organisms → Bacteria	2505	Open in IMG/M
3300033004\|Ga0335084_11072987	Not Available	809	Open in IMG/M
3300034115\|Ga0364945_0254126	Not Available	542	Open in IMG/M
3300034147\|Ga0364925_0097943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1038	Open in IMG/M
3300034148\|Ga0364927_0103781	Not Available	792	Open in IMG/M
3300034354\|Ga0364943_0347052	Not Available	567	Open in IMG/M
3300034643\|Ga0370545_104132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	620	Open in IMG/M
3300034819\|Ga0373958_0047510	Not Available	897	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.17%
Host-Associated	Host-Associated	15.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.50%
Aquatic	Environmental → Aquatic	26.67%
Plants	Host-Associated → Plants	15.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.17%
Sediment	Environmental → Aquatic → Sediment	25.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Floodplain	Environmental → Terrestrial → Floodplain	3.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.33%
Marine	Environmental → Aquatic → Marine	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	25.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Loam	Environmental → Terrestrial → Soil → Loam	4.17%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	25.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.33%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	31.67%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	22.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.17%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011398	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2	Environmental	Open in IMG/M
3300011399	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011424	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012122	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT200_2	Environmental	Open in IMG/M
3300012163	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT800_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_00231710	2124908045	Soil	MKNLMIVAASLMIVANAQAEQMEIGVEMTPAVESKQMVSAARSDERFGNYALENVAAGGQ
JGI10216J12902_1045446682	3300000956	Soil	VAASLMIVANAQAEQQFEISVEMTPVVEQKQVVTAKSDERFGNYALENVAAGGQ*
JGI10216J12902_1165803301	3300000956	Soil	VAASLMIVANAQAEQQMEIGVEMTPVVESKRIVAAKSDERFTNYALENVAAGGQ*
Ga0068995_100849551	3300005206	Natural And Restored Wetlands	MKKLMIAASLMFVATAQANEMLEIGVDVTPMVKQEQQVVVAKSDSRFANYALENIAAGGQ
Ga0068868_1004607021	3300005338	Miscanthus Rhizosphere	MKMKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYALENIAAGGQ*
Ga0070673_1023694581	3300005364	Switchgrass Rhizosphere	MKKIMIAAAASLMFVANAQAEEQFEIGVEITPMVKKQTKVVAAKSDERFANYSLENVAAGGQ*
Ga0070688_1004621761	3300005365	Switchgrass Rhizosphere	MKKLMIAVASLMFVANVQAEEAFEIGVEMTPMPKQEKVAATKSDTRFADYALENIAAGGQ
Ga0070710_100320383	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLLIVAASLMVIANVHAEESLEIGVEMTPVVKQEKAKSDSRFDNYAIENSAAGSQ*
Ga0070711_1004227493	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLLIVAASLMVIANVHAEVSLEIGVEMTPVVKQEKAKSDSRFDNYAIENSAAGSQ*
Ga0070686_1017113991	3300005544	Switchgrass Rhizosphere	MKKIMIAAAASLMFVANAQAEEQFEIGVEITPIVKEQTKVVAAKSDERFANYS
Ga0070664_1012046921	3300005564	Corn Rhizosphere	MKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYA
Ga0068854_1014533791	3300005578	Corn Rhizosphere	KKLMIAVASLMFVANVQAEEAFEIGVEMTPMPKQEKVAATKSDTRFADYALENIAAGGQ*
Ga0075430_1012118351	3300006846	Populus Rhizosphere	MKNIMIAAASLMFVATAQAEQQFEIQVEMTPIVKEQRKAVAAKSDERFANYALENIAAGGQ*
Ga0075420_1015393572	3300006853	Populus Rhizosphere	MEMKNIMIAAASLMFVATAQAEQQFEIQVEMTPIVKEQRKAVAAKSDERFANYALENIAAGGQ*
Ga0075424_1018289942	3300006904	Populus Rhizosphere	MKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAAT
Ga0079216_109175962	3300006918	Agricultural Soil	MKKLVIAAASLMFVATAQAEQLMEIGVEMTPIVAKKKVAAKSDTRFDNYALENVAAGGQ*
Ga0079218_105202752	3300007004	Agricultural Soil	MKNLMIVAASLMIVANVQAEEMEIGVEMTPMVESKQAATAKADERFANYALENSASN*
Ga0079218_130863123	3300007004	Agricultural Soil	IVIAASLMFVATAQAGEMEIGVEMTPATKKTQVVAKSDARFDNYALENSAAGGQ*
Ga0079218_133062901	3300007004	Agricultural Soil	MKKIVIAASLMFVATAQAGEMEIGVEMTPATKKTQVVAKSDSRFENYALENSAAGGQ*
Ga0079218_133079562	3300007004	Agricultural Soil	SLPGTPRAHIKATRLTEPGQTNREMKMKKLVIAAASLMFVATAQAEQLMEIGVEMTPIVAKKKVAAKSDTRFDNYALENVAAGGQ*
Ga0105247_115425441	3300009101	Switchgrass Rhizosphere	MKMKKLMIAVASLMFVANVQAEEAFEIGVEMTPMAQPAKVAATKSDSRFADYALENIAAGGQ*
Ga0105259_10134041	3300009597	Soil	MKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ*
Ga0105259_10134042	3300009597	Soil	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ*
Ga0105340_10223084	3300009610	Soil	MKMKKLTIAVASLMFVATAQANEMMEIGVDVTPMVKEQQVVVAKSDSRFANYALENIAAGGQ*
Ga0126311_102388944	3300010045	Serpentine Soil	MKKIMIAAAASLMFVASAQAEEQFEIGVEITPIVKEQTKVVAAKSDERFANYSLENVAAGGQ*
Ga0126382_111663212	3300010047	Tropical Forest Soil	MKKLLIIAASLMVVANVQAEESLEIGVEMTPVAKQQVVVAKADRFADYALENIAAGGQ*
Ga0134124_104012832	3300010397	Terrestrial Soil	MKMKKLMIAVASLMLVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYALEKIAAGGQ*
Ga0134123_116646681	3300010403	Terrestrial Soil	MKKIMIAAAASLMFVANAQAEEQFEIGVEITPMVKEQTNVVAAKSDERFANYSLENVAAGGQ*
Ga0137348_10760082	3300011398	Soil	GQTNREMKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDSRFGAYALENVAAGGQ*
Ga0137466_10111652	3300011399	Soil	MKSLMIAAASLMIVANAQAEQQFEIQVEMTPVVAEKQTVAAKSDERFTNYALENVAAGGQ
Ga0137454_10339331	3300011406	Soil	MKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMVKEQQVVVAKSDSRFANYALENIAAGGQ*
Ga0137333_10035523	3300011413	Soil	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEPVALAKWDARFKNYSLENIAAGGQ*
Ga0137326_11360451	3300011417	Soil	MKMKNLMIAAASLMFVATAQANEMMEIGVDVTPIVKQEPVALAKWDARFKNYSLENIAAGGQ*
Ga0137446_11018322	3300011419	Soil	LIVAASLMFVANAQAEEMLEIGVDVTPMAKQERVVAAKSDARFENYALENAAAGGQ*
Ga0137439_11370621	3300011424	Soil	MKMKKLMIAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ*
Ga0137455_10130791	3300011429	Soil	MKMKKLTIAAASLMFVATAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ*
Ga0137443_10177871	3300011433	Soil	AAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEPVALAKWDARFKNYSLENIAAGGQ*
Ga0137426_10103531	3300011435	Soil	REMKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ*
Ga0137429_12059371	3300011437	Soil	TEPGQTNREMKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ*
Ga0137451_10077004	3300011438	Soil	MKMKKLTIAVASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAVGGQ*
Ga0137457_10105284	3300011443	Soil	AASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ*
Ga0137463_10328312	3300011444	Soil	MKKLLIAAASLMFVVTAQAEEQFEIGVEMTPMVKQQKVVAKSDARFDNYALENVAAGGQ*
Ga0137445_10059423	3300012035	Soil	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALATWDARFKNYSLENIAAGGQ*
Ga0137332_10340621	3300012122	Soil	REMKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPMSKQEQVVVAKSDSRFANYAFENIAAGGQ*
Ga0137332_10340622	3300012122	Soil	MKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKEERVVVAKSDSRF
Ga0137355_10197322	3300012163	Soil	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIGAGGQ*
Ga0137357_10408383	3300012168	Soil	QTNREMKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ*
Ga0150985_1203765091	3300012212	Avena Fatua Rhizosphere	TEPGDTGRSKMKKIMIAAAASLMFVANAQAEEQFEIGVEITPIVKEQKKVVAKKSDERFANYSLENVAAGGQ*
Ga0150984_1189769921	3300012469	Avena Fatua Rhizosphere	MKKFLIVAASLMVVANVQAEESMEIGVEITPIAKQQVVVAKADRFANYALENIAAGGQ*
Ga0157294_102159381	3300012892	Soil	MKKIMIAAAASLMFVANAQAEEQFEIGVEITPIVKEQTKVVAAKSDERFANYSLENVAAGGQ*
Ga0164301_104368782	3300012960	Soil	GEMKMKKLMIAVASLMFVANVQAEEAFEIGVEMTPMAQPAKVAATKSDSRFADYALENIAAGGQ*
Ga0164308_100752011	3300012985	Soil	ASLMFVANVQAEEAFEIGVEMTPMAKQEKVAATKSDTRFADYALENIAAGGQ*
Ga0164306_110384672	3300012988	Soil	MKKLLIVAASLMVIANVHAEESLEIGVEMTPVVKQEKAKSDSRFDNYAIENSAAGGQ*
Ga0157380_121872251	3300014326	Switchgrass Rhizosphere	MKNLMIVAASLMIVANVQAEESLEIGVEMTPVVESKQVATATSDERFSNYALENSASN*
Ga0180064_10255281	3300014876	Soil	MKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAADGQ*
Ga0137409_107813921	3300015245	Vadose Zone Soil	MKMKKLLIAAASLMFVVTAQAEEQFEIGVEMTPMVKQQKVVAKSDARFDN
Ga0180067_10035171	3300015257	Soil	TRLTEPGQTNREMKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ*
Ga0132258_135969481	3300015371	Arabidopsis Rhizosphere	LSQGKQGETNMKKLLIVAASLMVVANVQAEESMEIGVEMTPLSKQVQVVAKSDSRFANYALENIAAGGQ*
Ga0132256_1018717072	3300015372	Arabidopsis Rhizosphere	MKKLLIVAASLMVVANVQAEESMEIGVEMTPLSKQVQVVAKSDSRFANYALENIAAGGQ*
Ga0184616_104084251	3300018055	Groundwater Sediment	MKNLMIVAASLMIVANAQAEQFEISVEMTPVVAEKQMVAAKSDERFTNYALENVAAGGQ
Ga0184628_100304742	3300018083	Groundwater Sediment	MKTLLITAASLMFVANVQAEEMLEIGVDVTPMAKQERVVAAKSDARFENYALENAAAGGQ
Ga0184629_106867752	3300018084	Groundwater Sediment	RARTLDREMKMKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ
Ga0190272_109036732	3300018429	Soil	MKKIMIAAASLMFVATAQAEQQFEISVEMTPIVKEQKKVVAAKSDARFANYALENVAAGG
Ga0190272_130437111	3300018429	Soil	MKSLMIAAASLMIVANAQAEQQFEIGVEMTPVVASKQIVAKSDERFTNYALENVAAGGQ
Ga0190270_132632492	3300018469	Soil	MKNLMIVAASLMIVANAQAEQQFEISVEMTPVVAQKKIAAAKSDDRFTNYALENVAAGGQ
Ga0190274_104117311	3300018476	Soil	MKKIIIAAASLMFVATAQAEQQFEIGVDITPMVKEQKVVAAKSDERFANYALENVAAGGQ
Ga0190274_110055232	3300018476	Soil	MKNLMIVAASLMIVANAQAEQFEIAVEMTPVVAEKQMVAAKSDERFTNYALENVAAGGQ
Ga0190274_123713671	3300018476	Soil	MKKIMIAAAASLMFVANAQAEEQFEIGVEITPIVKEQTKVVAAKSDERFANYSLENVAAGGQ
Ga0190274_135810381	3300018476	Soil	MKNLMIVAASLMIVANAQAEQQFEISVEMTPVVEQKQIAAAKSDDRFTNYALENAAAGGQ
Ga0190271_102255684	3300018481	Soil	LMIVAASLMIVANAQAEQQFEISVEMTPVVEQKQVAAKSDERFANYALENVAAGGQ
Ga0190271_114251771	3300018481	Soil	MKNLMIVAASLMIVANAQAEQFEIGVDMTPVVEQKQIVTAKSDDRFTNYSLENVAAGGQ
Ga0190271_131511512	3300018481	Soil	MKSLMIVAASLMIVANAQAEQQFEISVEMTPVVAEKQTVAAKSDERFTNYALENV
Ga0190271_132591551	3300018481	Soil	MKNLMIVAASLMIVANAQAEQQFEISVEMTPVVAEKQTVAAKSDERFTNYALENV
Ga0190264_101797782	3300019377	Soil	MKNLMIVAASLMIVANAQAEQQFEISVEMTPVVAEKQTVAAKSDERFSNYALENAAAGGQ
Ga0190264_101797783	3300019377	Soil	MKSLMIAAASLMIVANAQAEQLDFGVEMTPVVESKKVVTAKADERFGNYALENVAAGGQ
Ga0190264_101797784	3300019377	Soil	AASLMIVANAQAEQQMEIGVEMTPVVAQKQIVAAKSDERFTNYALENVAAGGQ
Ga0190264_121714952	3300019377	Soil	IVAASLMIVANAQAEQQFEISVEMTPVVAEKQRVAAKSDERFTNYALENVAAGGQ
Ga0193752_100011338	3300020027	Soil	MKRIVIAAASLVFAVAAHAEEQFEIGVEMTPIVKEQKVVAAKADSRFDSYALENAAAGGM
Ga0193752_100040843	3300020027	Soil	MKKIMIAAASLMFVATAQAEQQFEIQVEMTPIVKEQKKVVAGKSDERFANYALENVAAGG
Ga0182009_107588181	3300021445	Soil	MKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYALENIAAGGQ
Ga0222622_103836821	3300022756	Groundwater Sediment	MKKLLIVAASLMFAVTAQAEDQFEIGVEMTPMVKQQQKVVAKSDARFDNYALENAAAGGQ
Ga0247693_10620961	3300024181	Soil	MKKLMIAVASLMFVANVQAEEAFEIGVEMTPMAQPAKVAATKSDSRFADYALENIAAGGQ
Ga0207709_108251111	3300025935	Miscanthus Rhizosphere	MKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYALENIAAG
Ga0207670_103673873	3300025936	Switchgrass Rhizosphere	MKKLMIAVASLMFVANVQAEEAFEIGVEMTPMAQPAKVAATKSDSRFADYALE
Ga0207669_113291961	3300025937	Miscanthus Rhizosphere	MKKIMIAAAASLMFVANAQAEEQFEIGVDITPMVKEQQKVAAKSDERFANYSLENVAAGG
Ga0207679_110947992	3300025945	Corn Rhizosphere	MKKLMIAVASLMFVANVQAEEGFEIGVEMTPMPKQEKVAATKSDTRFADYALENIA
Ga0208320_10297222	3300027362	Soil	MKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ
Ga0208185_10139632	3300027533	Soil	MKKLTIAVASLMFVATAQANEMMEIGVDVTPMVKEQQVVVAKSDSRFANYALENIAAGGQ
Ga0208454_11139341	3300027573	Soil	MKNLMIAAASLMFVATAQANEMMEIGVDVTPMAKQEQVVVAKSDSRFANYALENIAAGGQ
Ga0307503_100967673	3300028802	Soil	MKTLMIAAASLMIVATAQANDVKMAEVEMTPMVAEKQIVAKTDSRFDNYALENAASGGQ
Ga0307500_100124331	3300031198	Soil	MKKLLIAAASLMFVVTAQAEEQFEIGVEMTPMVKQQKVAAKSDARFDNYALENAAAGGQ
Ga0307497_100260473	3300031226	Soil	MKKILIAAASLMFVVTAQAEDQFEIGVEMTPMVKQQKVVAKSDARFDNYALENAAA
Ga0307497_100861043	3300031226	Soil	MKTLMIAAASLMVVATAQANDVQMAEVEMTPMVAQKQVVAKTDSRFDNYALENAASGGQ
Ga0170824_1226669261	3300031231	Forest Soil	MKKLLIVAASLMVVANVHAEESLEIGVEMTPVVVKQEKAKSDSRFDNYAIENSAAGSQ
Ga0307506_102558491	3300031366	Soil	MKTLMIAAASLMVVATAQANDVKMAEVEMTPMVAEKQIVAKTDSRFDNYALENAASGGQ
Ga0307506_102968501	3300031366	Soil	MKKILIAAAASLMFVANAQAEEQFEIGVDITPMVREQQTVVTAKSDERFANYSLE
Ga0307505_100692783	3300031455	Soil	MKSLMIVAASLMIVANAQAEQQFEIAVEMTPVVESKKMVTAKSDERFTNYALENVAAGGQ
Ga0307405_107193713	3300031731	Rhizosphere	MKKIMIAAASLMFVATAQAEQQFEIQVEMTPIVKEQQKVVAAKSDERFANYALENVAAGG
Ga0310904_114071891	3300031854	Soil	MKKIIIAAASLMFVATAQAEQQFEIGVDITPMVKEQQKVAAKSDERFANYSLENVAAGGQ
Ga0307407_103680111	3300031903	Rhizosphere	HNRLTEPGDTGRSKMKKIMIAAAASLMFVANVQAEQQFEIGVELTPIVKEQQKVVAAKSDERFANYALENAAAGGQ
Ga0315910_100584223	3300032144	Soil	MKSLMIVAASLMIVANAQAEQLDFGVEMTPMVESKQVATAKSDERFANYALENSASN
Ga0315910_108042741	3300032144	Soil	MKRLMIVAASLMIVANVQAEEMDLGVEMTPMVESKQVAAAKSDERFANYALESSSSN
Ga0315910_112463362	3300032144	Soil	CSYRGITGLTEPGLGREKMKNLMIVAASLMIVANAQAEQQFEISVEMTPVVEPKQMAAAKSDDRFTNYALENIAAGGQ
Ga0315910_112605041	3300032144	Soil	MKSLMIVAASLMIVANAQAEQQMEIGVEMTPVVEAKKIVAAKSDERFTNYALENVAAGGQ
Ga0315912_100628361	3300032157	Soil	MKNLMIVAASLMIVANAQAEQQFEIGVDMTPVVAQKQIVTAKSDERFTNY
Ga0315912_103832151	3300032157	Soil	MKKLMIAASLMFVATAQANETMEIGVDVTPMVQQEQQVVVAKSDSRFANYALENIAAGGQ
Ga0315912_103832152	3300032157	Soil	MKKLMIAAASLMIAASAQASQPEYTMEIGVDVTPVVKEQVAVTKWDSRFGAYALENVAAGGQ
Ga0315912_105395832	3300032157	Soil	MKSLMIVAASLMIVANAQAEELEFGVEMTPMVESKQVATAKSDERFSNYALENSASN
Ga0315912_105395833	3300032157	Soil	AASLMIVANAQAEELEFGVEMTPMVESKQVATAKSDERFANYALENSASN
Ga0307471_1029515401	3300032180	Hardwood Forest Soil	DTNMKTLLIVAASLMVVANVQAEESMEIGVEITPIAKQEVVVAKADRFSNYALENIAAGG
Ga0307472_1005761742	3300032205	Hardwood Forest Soil	MKKILIVAASLMVVANVQAEEMLEIGVDMTPMAKQEKVVAARTDDRFANYSLENAAAGGQ
Ga0335085_108893121	3300032770	Soil	MKKLLIVAASLMVIANVHAEDSLEIGVEMTPMVKQDKPVAKSDSRFDNYALENIAAGGQ
Ga0335084_101412934	3300033004	Soil	MKKLLIVAASLMVVANVHAEDSLEIGVEMTPMVKQEKPVAKSDSRFDNYALENIAAGGQ
Ga0335084_110729871	3300033004	Soil	MKKLLIVAASLMVVANVHAEDSLEIGVEMTPMVKQDKPVAKSDSRFDNYALENIAAGGQ
Ga0364945_0254126_43_231	3300034115	Sediment	MKMKKLTIAVASLMFVATAQANEMMEIGVDVTPMVKEQQVVVAKSDSRFANYALENIAAGGQ
Ga0364925_0097943_729_926	3300034147	Sediment	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEPVALAKWDARFKNYSLENIAAGGQ
Ga0364927_0103781_473_670	3300034148	Sediment	MKMKNLMIAAASLMFAVSAQASQPEYTMEIGVDVTPIVKQEQVALAKWDARFKNYSLENIAAGGQ
Ga0364943_0347052_245_433	3300034354	Sediment	MKMKKLTIAVASLMFVATAQANEMMEIGVDVTPMVKEQQVVGAKSDSRFANYALENIAAGGQ
Ga0370545_104132_409_597	3300034643	Soil	MKMNKLMIAAASLMFVANVQAEEMLEIGVDVTPMAKQERVVAAKYDSRFENYALENAAAGGQ
Ga0373958_0047510_597_785	3300034819	Rhizosphere Soil	MKMKKLMIAVASLMFVANVQAEEAFEIGVEMTPMAQPAKVAATKSDSRFADYALENIAAGGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073204

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences