Metagenome Family F073176

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073176
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	62 residues
Representative Sequence	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Number of Associated Samples	96
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.40 %
% of genes near scaffold ends (potentially truncated)	32.50 %
% of genes from short scaffolds (< 2000 bps)	82.50 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (55.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.22% β-sheet: 0.00% Coil/Unstructured: 39.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.7.12.0: automated matches	d2i0ma_	2i0m	0.86825
a.7.7.1: BAG domain	d3ldqb1	3ldq	0.85232
a.7.12.0: automated matches	d4q25a_	4q25	0.84409
a.250.1.1: IpaD-like	d3nfta_	3nft	0.83864
a.7.12.1: PhoU-like	d1vcta1	1vct	0.82441

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13646	HEAT_2	24.17
PF00664	ABC_membrane	10.83
PF13115	YtkA	5.83
PF12543	DUF3738	3.33
PF13738	Pyr_redox_3	3.33
PF13434	Lys_Orn_oxgnase	1.67
PF03130	HEAT_PBS	1.67
PF09976	TPR_21	0.83
PF13091	PLDc_2	0.83
PF00196	GerE	0.83
PF13442	Cytochrome_CBB3	0.83
PF00005	ABC_tran	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.33 %
Unclassified	root	N/A	11.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.33 %
Unclassified	root	N/A	11.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.33 %
Unclassified	root	N/A	11.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.17 %
Unclassified	root	N/A	11.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.50 %
Unclassified	root	N/A	11.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.50 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.50 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	11.67 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.50 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.67 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	11.67 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.50 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	11.67 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1.67 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.50 %
Unclassified	root	N/A	11.67 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1.67 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT01B65BS	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300000956\|JGI10216J12902_101003107	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	620	Open in IMG/M
3300004156\|Ga0062589_101972147	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300004157\|Ga0062590_100312574	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300005093\|Ga0062594_100152102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1518	Open in IMG/M
3300005328\|Ga0070676_10197778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1316	Open in IMG/M
3300005328\|Ga0070676_11003614	Not Available	627	Open in IMG/M
3300005331\|Ga0070670_100001722	All Organisms → cellular organisms → Bacteria	17816	Open in IMG/M
3300005333\|Ga0070677_10099489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1279	Open in IMG/M
3300005333\|Ga0070677_10163947	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300005334\|Ga0068869_100092686	All Organisms → cellular organisms → Bacteria	2274	Open in IMG/M
3300005334\|Ga0068869_100586072	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300005338\|Ga0068868_100251785	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300005340\|Ga0070689_100157176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1836	Open in IMG/M
3300005340\|Ga0070689_101192314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300005344\|Ga0070661_100053263	All Organisms → cellular organisms → Bacteria	2961	Open in IMG/M
3300005344\|Ga0070661_101290731	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	612	Open in IMG/M
3300005353\|Ga0070669_100047968	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300005354\|Ga0070675_100678367	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	938	Open in IMG/M
3300005356\|Ga0070674_101181481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300005455\|Ga0070663_100861696	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005457\|Ga0070662_101385168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300005471\|Ga0070698_100675142	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300005543\|Ga0070672_101407627	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005564\|Ga0070664_100518657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1100	Open in IMG/M
3300005577\|Ga0068857_102254480	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300005615\|Ga0070702_100143673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1523	Open in IMG/M
3300005617\|Ga0068859_101199761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300005618\|Ga0068864_100423422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1269	Open in IMG/M
3300005719\|Ga0068861_100800550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300005842\|Ga0068858_102408899	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300006881\|Ga0068865_101652859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300006894\|Ga0079215_10284306	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300006954\|Ga0079219_11964410	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300009094\|Ga0111539_12380636	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300009162\|Ga0075423_11034566	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300009176\|Ga0105242_11042530	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300009177\|Ga0105248_10535025	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300009551\|Ga0105238_10127944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2518	Open in IMG/M
3300009551\|Ga0105238_11386616	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300010399\|Ga0134127_13446275	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300010400\|Ga0134122_13293060	Not Available	507	Open in IMG/M
3300010403\|Ga0134123_11686062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300012212\|Ga0150985_118305301	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012469\|Ga0150984_110894318	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300012892\|Ga0157294_10010483	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300012909\|Ga0157290_10461218	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300012910\|Ga0157308_10046181	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300012914\|Ga0157297_10080474	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300012915\|Ga0157302_10155571	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012916\|Ga0157310_10025324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1573	Open in IMG/M
3300013297\|Ga0157378_12944043	Not Available	528	Open in IMG/M
3300013308\|Ga0157375_13731363	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300014325\|Ga0163163_11753548	All Organisms → cellular organisms → Bacteria → FCB group	681	Open in IMG/M
3300014326\|Ga0157380_10338481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1402	Open in IMG/M
3300014326\|Ga0157380_11984673	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300014326\|Ga0157380_12723406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300014969\|Ga0157376_12467044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300015373\|Ga0132257_100231399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2201	Open in IMG/M
3300017965\|Ga0190266_10216171	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300018469\|Ga0190270_10107846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2154	Open in IMG/M
3300018469\|Ga0190270_10136579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1963	Open in IMG/M
3300018476\|Ga0190274_10291840	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300018476\|Ga0190274_11541431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	756	Open in IMG/M
3300018476\|Ga0190274_13030681	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300018476\|Ga0190274_13175937	Not Available	553	Open in IMG/M
3300018481\|Ga0190271_10026383	All Organisms → cellular organisms → Bacteria → Acidobacteria	4599	Open in IMG/M
3300018481\|Ga0190271_10115263	All Organisms → cellular organisms → Bacteria → Acidobacteria	2514	Open in IMG/M
3300018481\|Ga0190271_10491070	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300019356\|Ga0173481_10073634	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300019362\|Ga0173479_10625456	Not Available	568	Open in IMG/M
3300020027\|Ga0193752_1141336	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300020034\|Ga0193753_10002373	All Organisms → cellular organisms → Bacteria	14863	Open in IMG/M
3300021082\|Ga0210380_10000012	All Organisms → cellular organisms → Bacteria	161570	Open in IMG/M
3300025893\|Ga0207682_10026180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2317	Open in IMG/M
3300025893\|Ga0207682_10195625	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300025899\|Ga0207642_10008439	All Organisms → cellular organisms → Bacteria	3534	Open in IMG/M
3300025907\|Ga0207645_10499471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300025908\|Ga0207643_10454795	Not Available	815	Open in IMG/M
3300025920\|Ga0207649_10259587	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300025920\|Ga0207649_11380186	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300025923\|Ga0207681_10437406	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300025924\|Ga0207694_10038789	All Organisms → cellular organisms → Bacteria	3663	Open in IMG/M
3300025926\|Ga0207659_10033207	All Organisms → cellular organisms → Bacteria	3549	Open in IMG/M
3300025927\|Ga0207687_10523314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300025930\|Ga0207701_10634889	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300025931\|Ga0207644_10924537	Not Available	731	Open in IMG/M
3300025934\|Ga0207686_10856420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300025936\|Ga0207670_10690203	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300025938\|Ga0207704_10011644	All Organisms → cellular organisms → Bacteria	4339	Open in IMG/M
3300025938\|Ga0207704_10809364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300025940\|Ga0207691_10258484	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300025940\|Ga0207691_10328174	Not Available	1311	Open in IMG/M
3300025942\|Ga0207689_10341447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300025945\|Ga0207679_11119118	Not Available	722	Open in IMG/M
3300026035\|Ga0207703_11740823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300026067\|Ga0207678_10829037	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300026075\|Ga0207708_10203423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1580	Open in IMG/M
3300026088\|Ga0207641_10678019	Not Available	1014	Open in IMG/M
3300026095\|Ga0207676_10378491	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300026095\|Ga0207676_11412911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300026118\|Ga0207675_100402695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1349	Open in IMG/M
3300026118\|Ga0207675_100462974	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300026118\|Ga0207675_102647006	Not Available	511	Open in IMG/M
3300027886\|Ga0209486_10003536	All Organisms → cellular organisms → Bacteria	6697	Open in IMG/M
3300028812\|Ga0247825_10007023	All Organisms → cellular organisms → Bacteria → Acidobacteria	7384	Open in IMG/M
3300031366\|Ga0307506_10519017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300031847\|Ga0310907_10235480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300031854\|Ga0310904_10448264	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300031858\|Ga0310892_10881913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300031908\|Ga0310900_10143512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1605	Open in IMG/M
3300031908\|Ga0310900_11146887	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031943\|Ga0310885_10381192	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300032000\|Ga0310903_10208872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300032144\|Ga0315910_10265701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1297	Open in IMG/M
3300032157\|Ga0315912_11364098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300032157\|Ga0315912_11382825	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.67%
Environmental	Environmental	42.50%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.67%
Terrestrial	Environmental → Terrestrial	41.67%
Aquatic	Environmental → Aquatic	0.83%
Solid Waste	Engineered → Solid Waste	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.17%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Roots	Host-Associated → Plants → Roots	0.83%
Grass	Engineered → Solid Waste → Grass	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	23.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Composting	Engineered → Solid Waste → Grass → Composting	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	23.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	11.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_04239050	2170459020	Switchgrass, Maize And Mischanthus Litter	VRASVVIRAVMSAFILVLFAIAGMGWTWATLHQAPSQALASHAVLALSIAAGVLGLVALWRGARA
JGI10216J12902_1010031071	3300000956	Soil	MSAFILVLFVIAGLGWNWANTHQTPSQAMASHAVLLLSAAAGVVGLVALWRRSKA*
Ga0062589_1019721471	3300004156	Soil	MSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT*
Ga0062590_1003125742	3300004157	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWAASHQTPGQARASHAVLALSAIAGLVGLLALWRGSRA*
Ga0062594_1001521023	3300005093	Soil	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070676_101977782	3300005328	Miscanthus Rhizosphere	MSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRA*
Ga0070676_110036142	3300005328	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWAWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070670_10000172214	3300005331	Switchgrass Rhizosphere	MSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA*
Ga0070677_100994892	3300005333	Miscanthus Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLLALWRGSRA*
Ga0070677_101639472	3300005333	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSALAGVVGLVALWRGSRA*
Ga0068869_1000926864	3300005334	Miscanthus Rhizosphere	VRASIVIRAAMSAFIGVLFVIAGLGWTWANTHQTPAQALASHTVLGLSAIAGVVGLVALWRGSRT*
Ga0068869_1005860722	3300005334	Miscanthus Rhizosphere	MSAFILVLFVIAGMGWTWASGHQTPSQALASHAVLALSAVAGVVGLVALWRGSRV*
Ga0068868_1002517852	3300005338	Miscanthus Rhizosphere	MSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070689_1001571761	3300005340	Switchgrass Rhizosphere	RAAMSAFILVLFVIAGMGWAWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070689_1011923141	3300005340	Switchgrass Rhizosphere	VRASIVIRAAMSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT*
Ga0070661_1000532635	3300005344	Corn Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT*
Ga0070661_1012907312	3300005344	Corn Rhizosphere	VRASVVIRALMSAFILVLFVIAGMGWTWAATHQTPSQALASHAVLGLSVAAGVLGLIALWRGART*
Ga0070669_1000479684	3300005353	Switchgrass Rhizosphere	FILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070675_1006783672	3300005354	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASAHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070674_1011814811	3300005356	Miscanthus Rhizosphere	TRPGGPGRPGRPGRKSGGYNSSVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070663_1008616962	3300005455	Corn Rhizosphere	VRASVVIRAAMSAFILVLFVIVGVGWMWASAHQTPSQALASHAVLSLSALAGVVGLVALWRGSRA*
Ga0070662_1013851681	3300005457	Corn Rhizosphere	VIRAAMSAFILVLFVIAGMGWSWASTHQTASQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0070698_1006751422	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070672_1014076272	3300005543	Miscanthus Rhizosphere	VRASILIRAAMSAFIGILFVIAGMGWNWATTHQTPAQALGSHVVLALSVIAGLVGLVALWRGARA*
Ga0070695_1002069511	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0070664_1005186572	3300005564	Corn Rhizosphere	SIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT*
Ga0068857_1022544801	3300005577	Corn Rhizosphere	VLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVAGLIGLWRRPRT*
Ga0070702_1001436733	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0068859_1011997611	3300005617	Switchgrass Rhizosphere	VRASIVIRAVMSAFILVLFVIAGMGWTWATTHQAPSQALASHAVLALSAVAGVVGLIALWRGART*
Ga0068864_1004234222	3300005618	Switchgrass Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA*
Ga0068861_1008005501	3300005719	Switchgrass Rhizosphere	GRKSGGYNSSVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0068858_1024088991	3300005842	Switchgrass Rhizosphere	MSAFILVLFIIAGMGWTWATTHQTPSQALASHAVLALSAVAGVVGLI
Ga0068865_1016528592	3300006881	Miscanthus Rhizosphere	SVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT*
Ga0079215_102843062	3300006894	Agricultural Soil	VRASIVIRAAMSAFILVLFVIAAMGWKWAGANQPPAQALASQVVLALSTIAGVVGLVALWRTPRSKA*
Ga0079219_119644102	3300006954	Agricultural Soil	VRASIVIRAAMSAFICVLFVIAGLGWSWANTHQTPSQALASHAVLLLSAAAGVVGLIALWRGSKA*
Ga0111539_123806362	3300009094	Populus Rhizosphere	VRASILIRAAMSAFICVLFVIAGLGWNWATSHQPTGQARASHAVLALSAIAGLVGL
Ga0075423_110345662	3300009162	Populus Rhizosphere	LYNSPVRASVVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0105242_110425302	3300009176	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVVLWRGSRA*
Ga0105248_105350252	3300009177	Switchgrass Rhizosphere	MSAFIGILFVIAGMGWNWATTHQTPAQALGSHVVLALSVIAGLVGLVALWRGARA*
Ga0105238_101279443	3300009551	Corn Rhizosphere	FDVRASVVIRALMSAFILVLFVIAGMGWTWAATHQTPSQALASHAVLGLSVAAGVLGLIALWRGART*
Ga0105238_113866161	3300009551	Corn Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLLALW
Ga0134127_134462751	3300010399	Terrestrial Soil	VPVRASTVIRAAMPAFILVLFVIVVMGWTWASTHQTPAQAVASHGVLALSGIAGLVGLFFLWRGSRA*
Ga0134122_132930602	3300010400	Terrestrial Soil	FIVVLFVIVGKGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0134123_116860622	3300010403	Terrestrial Soil	VRASIVIRVAMSAFICVLFVIAGLGWNWATAHQTSGQALASHTVLALSAIAGLVGLIALWRGSRA*
Ga0150985_1183053011	3300012212	Avena Fatua Rhizosphere	VRASIVIRALMSAFILVLFAIAGMGWTWAATHQTPSQALASHAVLGLSVAAGVLGLVALWRG
Ga0150984_1108943181	3300012469	Avena Fatua Rhizosphere	RASIVIRALMSAFILVLFAIAGMGWTWAAAHQTPSQALASHAVLGLSVAAGVLGLIALWRGART*
Ga0157294_100104832	3300012892	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGLVGLLALWRGSRA*
Ga0157290_104612181	3300012909	Soil	VRASIVIRAAMSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGL
Ga0157308_100461812	3300012910	Soil	VRASIVIRAAMSAFSCVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGLVGLLALWRGSRA*
Ga0157297_100804741	3300012914	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGL
Ga0157302_101555711	3300012915	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGLVG
Ga0157310_100253244	3300012916	Soil	VRASIVIRAAMSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRA*
Ga0157378_129440431	3300013297	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0157375_135493012	3300013308	Miscanthus Rhizosphere	LFVIAGMGWTWASTHQTPSQALASHAVLLLSALAGVVGLVALWRGSRA*
Ga0157375_137313631	3300013308	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRG
Ga0163163_117535481	3300014325	Switchgrass Rhizosphere	NVPVRASIVIRVAMSAFICVLFVIAGMGWTWATAHQTPGQALASHAVLALSAIAGLVGLIALWRGSRA*
Ga0157380_103384812	3300014326	Switchgrass Rhizosphere	VRASTVIRAAMSAFILVLFVIAGMGWTWANAHQTPSQALASHAVLLLSAAAGVVGLVALWRGSKA*
Ga0157380_119846731	3300014326	Switchgrass Rhizosphere	MSAFILVLFVIAGLGWNWANTHQTPSQALASHAVLLLSAAAGVVGLIALWRGSKA*
Ga0157380_127234062	3300014326	Switchgrass Rhizosphere	LFVIAGMGWAWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0157376_124670441	3300014969	Miscanthus Rhizosphere	LYNSPVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA*
Ga0132257_1002313993	3300015373	Arabidopsis Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALPSHAVLLLSAVAGVIGLVALWRGSRA*
Ga0190266_102161711	3300017965	Soil	MSAFIGVLFVIAALGWTWAAANQSPAQALASRAVLGLSVAAGVAGLVALWRTPRT
Ga0190270_101078463	3300018469	Soil	GVLFVIAGLGWSWAAANQPPAQAFASRAVLGLSVAAGVVGLVALWRKSRA
Ga0190270_101365792	3300018469	Soil	MSAFIGVLFVIAGLGWSWAAANQPPAQAFASRAVLALSVVAGVVGLVALWRGSRA
Ga0190274_102918402	3300018476	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWATSHQTPGQARASHAVLALSAIAGLVGLLALWRGSRA
Ga0190274_115414311	3300018476	Soil	VRASIVIRVAMSAFICVLFVIAGLGWAWATSHQTPGQARASHAVLALSAIAGLVGLIALWRGSRA
Ga0190274_130306812	3300018476	Soil	AFICVLFVIAGLGWNWATSHQAPGQARASQAVLALSAIAGLVGLLALWRGSRA
Ga0190274_131759371	3300018476	Soil	VRASIVIRAAMSAFICVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGLVGLLALWRGSRA
Ga0190271_100263833	3300018481	Soil	VRASVVIRAAMSAFIGVLFVIAGLGWSWAAANQPPAQAFASRAVLGLSVAAGVVGLVALWRKSRA
Ga0190271_101152633	3300018481	Soil	MSAFILVLFVIAGMGWKWAGANQPPAQALASQVVLALSTIAGVIGLIALWRTPRSKA
Ga0190271_104910702	3300018481	Soil	MSAFICVLFVIAGLGWNWATGHQTPGQARASHAVLALSVLAGLVGMIALWRGSRA
Ga0173481_100736342	3300019356	Soil	AAMSAFICVLFVIAGLGWNWATSHQPPGQARASHAVLALSAIAGLVGLLALWRGSRA
Ga0173479_106254561	3300019362	Soil	VRASIVIRVAMSAFICVLFVIAGMGWTWATAHQTPGQALASHAVLALSAIAGLVGLIALWRGSRA
Ga0193752_11413362	3300020027	Soil	MRASLLIRVLISAFICVLFVITGVGWTWVSAHQTPAQARASHAVLGLSAAAGVIGLIGLWRKRPGL
Ga0193753_1000237310	3300020034	Soil	MRASILIRVLISAFICVLFVIAGVGWAWVSAHQTPVQARASHAVLGLSAAAGVIGLIALWRRRPGF
Ga0210380_10000012106	3300021082	Groundwater Sediment	MSAFIGVLFVIAGLGWSWTATNQPPAQAFASRAVLGLSVVAGVVGLVALWRGSRA
Ga0207682_100261803	3300025893	Miscanthus Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLLALWRGSRA
Ga0207682_101956251	3300025893	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSALAGVVGLVALWRGSRA
Ga0207642_100084393	3300025899	Miscanthus Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207645_104994711	3300025907	Miscanthus Rhizosphere	VRASIVIRAAMSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT
Ga0207643_104547951	3300025908	Miscanthus Rhizosphere	CGGQAGRVGQVGAGRESGRYNSSVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA
Ga0207649_102595872	3300025920	Corn Rhizosphere	MSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA
Ga0207649_113801862	3300025920	Corn Rhizosphere	MSAFILVLFVIAGMGWTWAATHQTPSQALASHAVLGLSVAAGVLGLIALWRGART
Ga0207681_104374061	3300025923	Switchgrass Rhizosphere	MSAFIGILFVIAGMGWNWATTHQTPAQALGSHVVLALSVIAGLVGLVALWRGARA
Ga0207694_100387893	3300025924	Corn Rhizosphere	VRASVVIRALMSAFILVLFVIAGMGWTWAATHQTPSQALASHAVLGLSVAAGVLGLIALWRGART
Ga0207659_100332074	3300025926	Miscanthus Rhizosphere	AVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207687_105233142	3300025927	Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT
Ga0207701_106348892	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RASILIRAAMSAFIGILFVIAGMGWNWATTHQTPAQALGSHVVLALSVIAGLVGLVALWRGARA
Ga0207644_109245372	3300025931	Switchgrass Rhizosphere	TFSVRASIVIRAAMSAFILVLFVIAGMGWTWASAHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207686_108564201	3300025934	Miscanthus Rhizosphere	VGKSGGYNSSVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVVLWRGSRA
Ga0207670_106902032	3300025936	Switchgrass Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT
Ga0207669_102689723	3300025937	Miscanthus Rhizosphere	MSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVA
Ga0207704_100116441	3300025938	Miscanthus Rhizosphere	SIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207704_108093641	3300025938	Miscanthus Rhizosphere	VRASTVIRAAMSAFILVLFVIVGMGWTWASTHQTPAQAAASHGVLALSGIAGLVGLFFLWRGSRA
Ga0207691_102584841	3300025940	Miscanthus Rhizosphere	VRASILIRAAMSAFIGILFVIAGMGWNWATTHQTPAQALGSHVVLALSVIAGLVGLVALWRGARA
Ga0207691_103281741	3300025940	Miscanthus Rhizosphere	SAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207689_103414472	3300025942	Miscanthus Rhizosphere	MSAFILVLFVIAGMGWTWASGHQTPSQALASHAVLALSAVAGVVGLVALWRGSRV
Ga0207679_111191181	3300025945	Corn Rhizosphere	MPAMSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA
Ga0207703_117408232	3300026035	Switchgrass Rhizosphere	VRASIVIRAVMSAFILVLFIIAGMGWTWATTHQTPSQALASHAVLALSAVAGVVGLIALWRGART
Ga0207678_108290372	3300026067	Corn Rhizosphere	VRASVVIRAAMSAFILVLFVIVGVGWMWASAHQTPSQALASHAVLSLSALAGVVGLVALWRGSRA
Ga0207708_102034232	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWAWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0207641_106780191	3300026088	Switchgrass Rhizosphere	VRASIVIRAVMSAFILVLFVIAGMGWTWATTYQTPSQALASHAVLALSAAAGVVGLIALWRGART
Ga0207676_103784912	3300026095	Switchgrass Rhizosphere	VRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPPQALASHAVLLLSAAAGVIGLVALWRGSRA
Ga0207676_114129111	3300026095	Switchgrass Rhizosphere	FSVRASIVIRAAMSAFILVLFVIAGMGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRT
Ga0207675_1004026953	3300026118	Switchgrass Rhizosphere	ASTVIRVAMSAFILILLAIVGMGWTWASTHQTRAQAAASHGVLALSGIAGLVGLFFLWRGSRA
Ga0207675_1004629742	3300026118	Switchgrass Rhizosphere	VRASIVIRAVMSAFIMVLFVIAGMGWTWASTHQTPSQALASHVVLLLSAVAGVIGLVALWRGSRA
Ga0207675_1026470061	3300026118	Switchgrass Rhizosphere	IRVAMSAFICVLFVIAGMGWTWATAHQTPGQALASHAVLALSAIAGLVGLIALWRGSRA
Ga0209486_100035369	3300027886	Agricultural Soil	VRASIVIRAAMSAFILVLFVIAAMGWKWAGANQPPAQALASQVVLALSTIAGVVGLVALWRTPRSKA
Ga0247825_100070235	3300028812	Soil	MSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT
Ga0307506_105190171	3300031366	Soil	PARPALPALYNSPVRASTVIRAAMSAFILVLFAIAGMGWTWASTHQTPSQALASHAVLLLSAVAGVIGLVALWRGSRA
Ga0310907_102354801	3300031847	Soil	VRASIVIRAAMSGFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT
Ga0310904_104482642	3300031854	Soil	VRASIVIRAAMSSFILVLFVIAGMGWTWATAHQTPAQALASHVVLLLSAAAGMVGLIALWRRPRT
Ga0310892_108819131	3300031858	Soil	VRASTVIRAAMSAFILILFVIVGMGWTWASTHQTPTQAAASHGVLALSGIAGLVGLFFLWRGSRA
Ga0310900_101435122	3300031908	Soil	VRASIVIRAAMSAFIGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRA
Ga0310900_111468871	3300031908	Soil	VRASIVIRAAMSSFILVLFVIAGMGWTWATAHQPPAQALASHVVLLLSAAAGMVGLIALWRRPRT
Ga0310885_103811922	3300031943	Soil	MSAFILVLFVIAGLGWNWANTHQTPSKALASHAVLLLSAAAGVVGLIALWRGSKA
Ga0310903_102088721	3300032000	Soil	IGVLFVIAGLGWNWTATNQPPAQAFASRAVLGLSVAAGVVGLVALWRGSRT
Ga0315910_102657011	3300032144	Soil	MSAFILVLFVIAGMGWTWATSHQTPTQALASHTVLFLSVAAGAAGLIGLWRRPRT
Ga0315912_113640981	3300032157	Soil	VIRAAMSAFIGVLFVIAGLGWTWASTHQTPSQALASHAVLLLSAAAGVIGLVALWRGSRA
Ga0315912_113828252	3300032157	Soil	VFVRASVVIRAAMSAFIFVLFVIVGLGWNWANTHQTPSQALASHAVLALSTIAGLLGLIALWRGSKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073176

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences