NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F073173

Metagenome / Metatranscriptome Family F073173

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F073173
Family Type Metagenome / Metatranscriptome
Number of Sequences 120
Average Sequence Length 64 residues
Representative Sequence MSFLRPLESLIGMFQCLFGMFMSGLVIFFPVVRGGSTVRVCGEFVELGSSLVRVIWH
Number of Associated Samples 86
Number of Associated Scaffolds 120

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.07 %
% of genes near scaffold ends (potentially truncated) 38.33 %
% of genes from short scaffolds (< 2000 bps) 69.17 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (87.500 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(40.000 % of family members)
Environment Ontology (ENVO) Unclassified
(31.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.667 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 57.65%    β-sheet: 0.00%    Coil/Unstructured: 42.35%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 120 Family Scaffolds
PF13545HTH_Crp_2 27.50
PF00027cNMP_binding 20.83
PF01370Epimerase 3.33
PF08338DUF1731 2.50
PF02518HATPase_c 1.67
PF13365Trypsin_2 1.67
PF00459Inositol_P 0.83
PF00669Flagellin_N 0.83
PF00326Peptidase_S9 0.83
PF04519Bactofilin 0.83
PF10150RNase_E_G 0.83
PF02310B12-binding 0.83
PF06580His_kinase 0.83
PF08924DUF1906 0.83
PF08279HTH_11 0.83
PF01850PIN 0.83
PF04389Peptidase_M28 0.83
PF00872Transposase_mut 0.83
PF04972BON 0.83
PF07238PilZ 0.83
PF13620CarboxypepD_reg 0.83
PF04134DCC1-like 0.83
PF01243Putative_PNPOx 0.83
PF01738DLH 0.83
PF16757Fucosidase_C 0.83
PF13489Methyltransf_23 0.83
PF00534Glycos_transf_1 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 120 Family Scaffolds
COG1090NAD dependent epimerase/dehydratase family enzymeGeneral function prediction only [R] 2.50
COG1344Flagellin and related hook-associated protein FlgLCell motility [N] 0.83
COG1664Cytoskeletal protein CcmA, bactofilin familyCytoskeleton [Z] 0.83
COG2972Sensor histidine kinase YesMSignal transduction mechanisms [T] 0.83
COG3011Predicted thiol-disulfide oxidoreductase YuxK, DCC familyGeneral function prediction only [R] 0.83
COG3275Sensor histidine kinase, LytS/YehU familySignal transduction mechanisms [T] 0.83
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 0.83


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.50 %
UnclassifiedrootN/A12.50 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001089|JGI12683J13190_1000789All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus4617Open in IMG/M
3300002245|JGIcombinedJ26739_100003876All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae11071Open in IMG/M
3300002245|JGIcombinedJ26739_100315735All Organisms → cellular organisms → Bacteria1446Open in IMG/M
3300004100|Ga0058904_1017338All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1445Open in IMG/M
3300004104|Ga0058891_1567643All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300004152|Ga0062386_100072580All Organisms → cellular organisms → Bacteria → Acidobacteria2617Open in IMG/M
3300005445|Ga0070708_100122377All Organisms → cellular organisms → Bacteria2401Open in IMG/M
3300005541|Ga0070733_10916478All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium589Open in IMG/M
3300006050|Ga0075028_100227802All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1015Open in IMG/M
3300006893|Ga0073928_10002031All Organisms → cellular organisms → Bacteria36615Open in IMG/M
3300007255|Ga0099791_10020482All Organisms → cellular organisms → Bacteria → Acidobacteria2839Open in IMG/M
3300007258|Ga0099793_10033928All Organisms → cellular organisms → Bacteria2185Open in IMG/M
3300007265|Ga0099794_10020292All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3006Open in IMG/M
3300007265|Ga0099794_10353012All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium765Open in IMG/M
3300007265|Ga0099794_10354345All Organisms → cellular organisms → Bacteria → Acidobacteria764Open in IMG/M
3300007265|Ga0099794_10722091All Organisms → cellular organisms → Bacteria → Acidobacteria531Open in IMG/M
3300009038|Ga0099829_10035907All Organisms → cellular organisms → Bacteria → Proteobacteria3574Open in IMG/M
3300009038|Ga0099829_10076274All Organisms → cellular organisms → Bacteria2555Open in IMG/M
3300009038|Ga0099829_10222898All Organisms → cellular organisms → Bacteria1532Open in IMG/M
3300009665|Ga0116135_1342929All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium597Open in IMG/M
3300010379|Ga0136449_100370903All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2558Open in IMG/M
3300011120|Ga0150983_10381957All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium865Open in IMG/M
3300011120|Ga0150983_10504074All Organisms → cellular organisms → Bacteria → Acidobacteria3588Open in IMG/M
3300011120|Ga0150983_11097331All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium908Open in IMG/M
3300011120|Ga0150983_11226584Not Available1173Open in IMG/M
3300011120|Ga0150983_12062235Not Available846Open in IMG/M
3300011120|Ga0150983_14872597All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300011120|Ga0150983_15252990All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1043Open in IMG/M
3300011120|Ga0150983_15390130All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300011120|Ga0150983_16116303All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium820Open in IMG/M
3300011270|Ga0137391_10682048All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300011271|Ga0137393_10146851All Organisms → cellular organisms → Bacteria1966Open in IMG/M
3300012096|Ga0137389_10168867All Organisms → cellular organisms → Bacteria1804Open in IMG/M
3300012096|Ga0137389_10339537All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1277Open in IMG/M
3300012189|Ga0137388_10856556All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300012202|Ga0137363_10273313All Organisms → cellular organisms → Bacteria1380Open in IMG/M
3300012202|Ga0137363_11774263Not Available510Open in IMG/M
3300012205|Ga0137362_10170985All Organisms → cellular organisms → Bacteria1865Open in IMG/M
3300012205|Ga0137362_10326688All Organisms → cellular organisms → Bacteria → Acidobacteria1328Open in IMG/M
3300012205|Ga0137362_11379330All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium591Open in IMG/M
3300012361|Ga0137360_10032210All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia3637Open in IMG/M
3300012361|Ga0137360_11637704All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300012362|Ga0137361_10098667All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2536Open in IMG/M
3300012363|Ga0137390_10979144All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300012582|Ga0137358_10140412All Organisms → cellular organisms → Bacteria → Acidobacteria1643Open in IMG/M
3300012582|Ga0137358_10587147All Organisms → cellular organisms → Bacteria → Acidobacteria748Open in IMG/M
3300012685|Ga0137397_10004229All Organisms → cellular organisms → Bacteria9977Open in IMG/M
3300012918|Ga0137396_10717060All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium737Open in IMG/M
3300012922|Ga0137394_10084307All Organisms → cellular organisms → Bacteria → Acidobacteria2662Open in IMG/M
3300012927|Ga0137416_10196262All Organisms → cellular organisms → Bacteria → Acidobacteria1617Open in IMG/M
3300012929|Ga0137404_11523113Not Available619Open in IMG/M
3300012929|Ga0137404_11729772All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300012929|Ga0137404_11738680Not Available579Open in IMG/M
3300012944|Ga0137410_10075011All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2461Open in IMG/M
3300014169|Ga0181531_10656376Not Available651Open in IMG/M
3300014489|Ga0182018_10722605Not Available518Open in IMG/M
3300014495|Ga0182015_10168463All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1480Open in IMG/M
3300014501|Ga0182024_10024238All Organisms → cellular organisms → Bacteria10796Open in IMG/M
3300014501|Ga0182024_10349742All Organisms → cellular organisms → Bacteria1932Open in IMG/M
3300014501|Ga0182024_11544063All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium756Open in IMG/M
3300014501|Ga0182024_11815226Not Available682Open in IMG/M
3300014501|Ga0182024_12104650All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium621Open in IMG/M
3300015052|Ga0137411_1100312All Organisms → cellular organisms → Bacteria1432Open in IMG/M
3300015241|Ga0137418_10046734All Organisms → cellular organisms → Bacteria3983Open in IMG/M
3300015241|Ga0137418_10099907All Organisms → cellular organisms → Bacteria2611Open in IMG/M
3300017925|Ga0187856_1000084All Organisms → cellular organisms → Bacteria91139Open in IMG/M
3300017942|Ga0187808_10591508Not Available516Open in IMG/M
3300017994|Ga0187822_10035524All Organisms → cellular organisms → Bacteria1348Open in IMG/M
3300017995|Ga0187816_10305376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium699Open in IMG/M
3300018005|Ga0187878_1265614All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium621Open in IMG/M
3300018012|Ga0187810_10242400All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium738Open in IMG/M
3300018037|Ga0187883_10579317All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300018038|Ga0187855_10045991All Organisms → cellular organisms → Bacteria2731Open in IMG/M
3300018042|Ga0187871_10606176Not Available608Open in IMG/M
3300020579|Ga0210407_10157602All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1752Open in IMG/M
3300020579|Ga0210407_10330874All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300020581|Ga0210399_11406907All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300021170|Ga0210400_10739444All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium808Open in IMG/M
3300021171|Ga0210405_10004255All Organisms → cellular organisms → Bacteria13563Open in IMG/M
3300021178|Ga0210408_10005472All Organisms → cellular organisms → Bacteria11153Open in IMG/M
3300021180|Ga0210396_10727852All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium855Open in IMG/M
3300021401|Ga0210393_11444283All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300021432|Ga0210384_10613556All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium977Open in IMG/M
3300021433|Ga0210391_10391196Not Available1091Open in IMG/M
3300021478|Ga0210402_10300179All Organisms → cellular organisms → Bacteria → Acidobacteria1487Open in IMG/M
3300021479|Ga0210410_10169358All Organisms → cellular organisms → Bacteria → Acidobacteria1951Open in IMG/M
3300021479|Ga0210410_10535290All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1044Open in IMG/M
3300025922|Ga0207646_10126198All Organisms → cellular organisms → Bacteria → Acidobacteria2301Open in IMG/M
3300026360|Ga0257173_1006327All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1247Open in IMG/M
3300026482|Ga0257172_1095961All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300026551|Ga0209648_10808766All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300026552|Ga0209577_10370195All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1046Open in IMG/M
3300027655|Ga0209388_1038801Not Available1371Open in IMG/M
3300027671|Ga0209588_1012396All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2588Open in IMG/M
3300027671|Ga0209588_1020244All Organisms → cellular organisms → Bacteria → Acidobacteria2083Open in IMG/M
3300027671|Ga0209588_1029528All Organisms → cellular organisms → Bacteria1749Open in IMG/M
3300027824|Ga0209040_10238431All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium919Open in IMG/M
3300027842|Ga0209580_10344282All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium742Open in IMG/M
3300027846|Ga0209180_10020922All Organisms → cellular organisms → Bacteria → Acidobacteria3467Open in IMG/M
3300027846|Ga0209180_10079140All Organisms → cellular organisms → Bacteria1854Open in IMG/M
3300027862|Ga0209701_10592811All Organisms → cellular organisms → Bacteria → Acidobacteria589Open in IMG/M
3300027875|Ga0209283_10054164All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2562Open in IMG/M
3300027903|Ga0209488_10031161All Organisms → cellular organisms → Bacteria3885Open in IMG/M
3300027908|Ga0209006_10281714All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300028047|Ga0209526_10300413All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1087Open in IMG/M
3300028536|Ga0137415_10009040All Organisms → cellular organisms → Bacteria9875Open in IMG/M
3300030991|Ga0073994_10042979All Organisms → cellular organisms → Bacteria → Acidobacteria2257Open in IMG/M
3300031015|Ga0138298_1229148All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300031234|Ga0302325_11506494All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium866Open in IMG/M
3300031236|Ga0302324_102515999All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium628Open in IMG/M
3300031708|Ga0310686_101035595All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium957Open in IMG/M
3300031718|Ga0307474_10270208All Organisms → cellular organisms → Bacteria → Acidobacteria1305Open in IMG/M
3300031753|Ga0307477_10272309All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1171Open in IMG/M
3300032160|Ga0311301_10273090All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2749Open in IMG/M
3300032180|Ga0307471_101017751All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300032205|Ga0307472_100092868All Organisms → cellular organisms → Bacteria2050Open in IMG/M
3300033405|Ga0326727_10447803All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1153Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil40.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil14.17%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil14.17%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.17%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost4.17%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.33%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.33%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.67%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.67%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.67%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa1.67%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.67%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.67%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.83%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.83%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.83%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.83%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.83%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004100Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004104Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018005Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150EnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031015Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12683J13190_100078933300001089Forest SoilMSFLRPLESFIGMFQCLLGMFVSCLVIFFPVVRSGSTVRVRSEFVKFRSPLVRVIWHGVSHPLSGTA*
JGIcombinedJ26739_10000387663300002245Forest SoilMSFFRRLESLIGMFHCLLGMLVSGLVILFPVMRGGSTVRVCREFVELGGSLVRVIWHCFFPSSA*
JGIcombinedJ26739_10031573533300002245Forest SoilMSFLRPLESFIGMFQRLFGMLMSGLVIFFSMVCRGSTVRVCGKFMEFGSSLVRVIWHRLSILGF
Ga0058904_101733833300004100Forest SoilMSFLRPLVGFIGMFQRLFGMLLPGLVIFFPVVCGSRTVRMCGEFVKFCGSLVRVIW
Ga0058891_156764313300004104Forest SoilMSIFRPLHGFTRMFQRLFGMLMSGLVIFFPVMRGGSTVRVCGEFMEFGSSLVRVIWH
Ga0062386_10007258043300004152Bog Forest SoilMRFLRPLESFIGMFHCLLGVFVSALVIFFPVVGGGSTMRVSGEFMEFGSSLVRVIWHSFSHPQ*
Ga0070708_10012237753300005445Corn, Switchgrass And Miscanthus RhizosphereMRFLRPLECFIGIFHSLLGMLVPGLVIFFPMVRGGCTVRVCGEFVELRSSLVRVIWHSAAYPR*
Ga0070733_1091647823300005541Surface SoilMSFLRRLVSLVGMFKRLFGMLVSGLVIFFPMVHGGSTTRVGGEFVEFGSSLVRVIWHRIPILALHLKIIPIFQLSNCGHSFPEFLTLDENRTL
Ga0075028_10022780223300006050WatershedsMRFLRPMVGLIGMFQRLFRMLVSGLVVFFPMVRCRSTVRMCGEFVEFSSSLVRLIWHS*
Ga0073928_10002031103300006893Iron-Sulfur Acid SpringMSFLRPLESFIGMFQCLLGVLVSGQVIFFPVVRGGGAMRVCGVFVEFGSSLFGASHLALFFHPRWRF*
Ga0099791_1002048213300007255Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGKVCVCGEFVEFGGSLVGVIWHDVSLDSIAS*
Ga0099793_1003392823300007258Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLNSTTS*
Ga0099794_1002029243300007265Vadose Zone SoilMRFLRPLECFIRIFHGLLGMLLPGLVIFFPMVRGGCTVRVCGKFVELRSSLVRVIWHSPAYPR*
Ga0099794_1035301223300007265Vadose Zone SoilESFIGMFHGLLGMLVPGLVIFFSVVRGTVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0099794_1035434523300007265Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLDSIAS*
Ga0099794_1072209123300007265Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLDSTAS*
Ga0099829_1003590723300009038Vadose Zone SoilMRFLRPLECFIGIFHGLLGMLVPGLVIFFPMVRGGSTVRVCGEFVELRSSLVRVIWHSAAYLR*
Ga0099829_1007627423300009038Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVHVCGEFVEFGSSLVGVIWHDVSFNSTTS*
Ga0099829_1022289813300009038Vadose Zone SoilSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLDSTASYNYSTFQTVL*
Ga0116135_134292923300009665PeatlandMSFLGRLERFIGMFQRLPGMLVSGLVIFFPVMHGGSTVRVCGLLVEFDSSLVRVLWHSVFHPRCPS*
Ga0136449_10037090333300010379Peatlands SoilMSILRPLHGFTRMFQRLSGMLVPGLVIFFPVVRCGSPVRMCSELVKFGRSLVRVLWHNGSHPPCPPNLD*
Ga0150983_1038195723300011120Forest SoilMSFLRCLESFIGIFKRLFGMLVSGLVICFSVVYRGRTVRVGREFVEFGSSLVRVIW
Ga0150983_1050407473300011120Forest SoilMGFLRPLESFIGMFQRLFRMLVSGLVVFFSVMRGGSTVGVCGEFVVFGSSLVRVAWHGVS
Ga0150983_1109733123300011120Forest SoilMSFLRPLESFIGMFQCLFGMFMSGLVIFLPVVRGGSTVRVCGEFVELGRSLVRVIWHSV
Ga0150983_1122658413300011120Forest SoilVSFLRRLESPLGIFKRLFGMLVSGLVIFFPVVYRRSTVRMGREFVEFGSSLVRVIWH
Ga0150983_1206223523300011120Forest SoilMSFLRALECFVRVFERLLGIFVSGLVIFFPVVHGGRTVGVCGEFMELGSPSVRVIWHSVS
Ga0150983_1343985933300011120Forest SoilMSVFRPLHGFTRMLERLSGMLVASQVISFSMVRGGSPVRVRGEFVEFGSSLVRVVWHSVSYPWSPLHLGTIRFSKLY
Ga0150983_1487259713300011120Forest SoilMSIFRPLHGFTRMFQRLFGMLMSGLVIFFPVMRGGSTVRVCGEFMEFGSSLVRVIWHSVS
Ga0150983_1525299023300011120Forest SoilMGFLRPLESFIGMFQRLFGMLMSGLVIFFSVMRGGSTVGVCGEFVVFGSSLVRVAWHGVSCP
Ga0150983_1539013023300011120Forest SoilMSFLRPLESLIGMFQCLFGMFMSGLVIFFPVVRGGSTVRVCGEFVELGSSLVRVIWH
Ga0150983_1611630323300011120Forest SoilMSFLRPLESFIGMFQGLSGMLLSGLVVFFAVVCGSGTVRVCGEFVELSSSLVRVIWHGIS
Ga0137391_1068204823300011270Vadose Zone SoilMSFLRRLESFIGMFQRLFGMLVSGLVIFLGVVCGGGKVCVCGEFVEFGGSLVGVIWHDVSLDSIAS*
Ga0137393_1014685123300011271Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLDSTASYNYSTFQTVV*
Ga0137389_1016886723300012096Vadose Zone SoilVSFLRPLESFIGMFQRLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLNSTTS*
Ga0137389_1033953723300012096Vadose Zone SoilMRFLRPLERLLGMFHGLPGMLVPGLVIFFSMVRGGGTVRVCGEFVELGSSLVRVIWHSAAYPR*
Ga0137388_1085655623300012189Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVHVCGEFVEFGSSLVGVIWHDVSLNSTTS*
Ga0137363_1027331323300012202Vadose Zone SoilLPMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGGSTVRVCGEFVELGGSLVRLTWHNISHLR*
Ga0137363_1177426313300012202Vadose Zone SoilLPMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGGSTVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0137362_1017098533300012205Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLGGVIWHDVSLNSITS*
Ga0137362_1032668833300012205Vadose Zone SoilMRFLRPLECLIGIFHGLLGMLVPSLVIFFPMVRGGSTVRVCGEFVELRSSLVRVI
Ga0137362_1137933023300012205Vadose Zone SoilMRFLRPLECFICIFHGLLGMFVPGLVIFFPMVRGGCTVRVCGEFVELSSSLVRVIWHGAAYPQ*
Ga0137360_1003221033300012361Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLNSITS*
Ga0137360_1046722213300012361Vadose Zone SoilMGFLRPLESFIGMFQRLFGMLVSRLVIFFSVMRGGTVGVCGEFVVFGSSLVHSVSYPWSPLHLGTIRFSKLY
Ga0137360_1163770423300012361Vadose Zone SoilECFICIFHGLLGMFVPGLVIFFPMVRGGCTVRVCGEFVELSSSLVRVIWHGAAYPQ*
Ga0137361_1009866743300012362Vadose Zone SoilMRFLRPLECFIRIFHGLLGMLLPGLVIFFPMVRGGGTVRVCGEFVELRSSLVRVIWHSPAYPR*
Ga0137390_1097914433300012363Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLN
Ga0137358_1014041213300012582Vadose Zone SoilMRFLRPLECLIGIFHGLLGMLVPSLVIFFPMVRGGSTVRVCGEFVELRSSLVRVIWHSATHPLR
Ga0137358_1058714723300012582Vadose Zone SoilMSFLRPLESFIGMFQGLFGMLVSGLVIILCVVRSGGTVRVCGEFVEFGSSLVGVIWHDVSLDSTAS*
Ga0137397_1000422973300012685Vadose Zone SoilMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGGSTVRVCGEFVELGGSLVRLTWHNISHLR*
Ga0137396_1071706023300012918Vadose Zone SoilMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGTVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0137394_1008430743300012922Vadose Zone SoilMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGKVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0137416_1019626233300012927Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVS
Ga0137404_1152311323300012929Vadose Zone SoilMRFLRPLECLIGIFHGLLGMLVPSLVIFFPMVRGGSTVRVCGEFVELRSSLVRVIWHSAT
Ga0137404_1172977213300012929Vadose Zone SoilLECFIGIFHGLLGMLVPGLVIFFPMVRGGGTVRVCGEFVELRSSLVRVIWHSAAPSPATVSS*
Ga0137404_1173868013300012929Vadose Zone SoilMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGGSTVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0137410_1007501113300012944Vadose Zone SoilLHGLPMSFLRPLESFIGMFHGLLGMLVPGLVIFFSVVRGTVRMCAEFVELGGSLVRVTWHSISHSR*
Ga0181531_1065637613300014169BogMSFLGRLERFIGVFERLFGMLMSGLVIFFPVMHSGSTVHMCGEFVEFGGSLVRILWHSVYHPQCHLRITPCS*
Ga0182018_1072260523300014489PalsaMSFLRRLEGLIGMFKRLFGMLVSGLVIFFPVMHGGSTVHVCGEFLEFGSSLVRVLWHSVFHPQCHLRIIPLSSMSN*
Ga0182015_1016846323300014495PalsaMSFLRRLERFIGMFRCLPGMFVSGLVIFFPVVHGGSTVRVCGEFVEFGSPLVRVIWHSASHPRRTS*
Ga0182024_1002423843300014501PermafrostMSFLGRLERSIGMYKCLFGMLVSGLVIFFPVMHGGSTVHVCGEFVEFSSTLVRVLWHSIFHPRFHLRIIPLS*
Ga0182024_1034974243300014501PermafrostMSFLGRLERFIGVFQRLPGMLVSGLVIFFPVMHGGSTVRVCGLLVEFGSSLVRVLWHSVFHPRCPS*
Ga0182024_1154406323300014501PermafrostMSFLRRLESFIGMFKRLLGMLVSGLVIFFPVVYGGATVHVGSEFVEFGSPLVRVIWHTIPSLGV
Ga0182024_1181522623300014501PermafrostMSFLRRLESFIGMFKRLFGMLVSGLVIFFPVVYGGGTVRVCGEFVEFGSSLVRVLWHSVFHPRCAF*
Ga0182024_1210465023300014501PermafrostMSFLGRLERSIGMFKCLFGMLVSGLVIFFPVMHGGSTVHVCGEFVEFGSSLVRVLWHSVFHPQCHLRIIPLSSLSN*
Ga0137411_110031233300015052Vadose Zone SoilMRFLRPLECFICIFHGLLGMFVPGLVIFFPMVRGGSTVRVCGEFVELRSSLVRVIWHSATHPLRPLHLR
Ga0137418_1004673443300015241Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVRSGGTVRVCGEFVEFGSSLVGVIWHDVSLNSTTS*
Ga0137418_1009990713300015241Vadose Zone SoilMGFLRPLKSFIGMFQRLFGMLVSGLVIFFSVMRGGRTVGVCGEFVVFGSSLVRVAWHSVSYPWSPL
Ga0187856_100008453300017925PeatlandMSFLRPLESLARMLQCLLGMLVSGLVIFFPVVRRSNAVCVCGEFVEFSSSLMRVIWHSVSQSPKSLAS
Ga0187808_1059150813300017942Freshwater SedimentMSFLRPLEGFMGIFQRLFGMLVSGLVIFFPVVRGGYTVRVCGEVMKFGGSLVPVIWHSFTSSLSAST
Ga0187822_1003552413300017994Freshwater SedimentMGFLRPLKCFIEMFRGLLGIFVSGLVIFLPMVCGRNTVCDCGEFV
Ga0187816_1030537613300017995Freshwater SedimentMSFLRPLKGFMGVFQRLFGMLVSGLVIFFPVVRGGYTVRVCGEVMKFGGSLVPVIWHSFPSSLSAPA
Ga0187878_126561423300018005PeatlandMSFLRPLESFIGMLHCLFGMLVCGLVIFFPVVRGRGTVRVCGEFVQFGCSLMRVIWHSVS
Ga0187810_1024240023300018012Freshwater SedimentMSFLRPLEGFMGMFQRLFGMLVSGLVIFFPVECGGSTVRVCGEFVKLGIFLVRVIWHNFPILRGA
Ga0187883_1057931713300018037PeatlandMSFLGRLERFIGVFQRLPGMLVSGLVIFFPVMRGGSTVRVCGLLVEFGSSLVRV
Ga0187855_1004599143300018038PeatlandMSFLGRLERFIGVFQRLPGMLVSGLVILFPVMRGGSTVRVCGLLVEFGSSLVRVLWHSVFHPRCPS
Ga0187871_1060617613300018042PeatlandMSFLGRLERFIGVFQRLPGMLVSGLVIFFPVMHGGSTVRVCGLLVEFDSSLVRVLWHSVFHPRCPS
Ga0210407_1015760223300020579SoilMGFLRPLKGFIGMFQRLLGMLVSGLVIFFTVVCGGGTVRVCGEFVEFGRSLVRVVWHNLSLGVQSAS
Ga0210407_1033087423300020579SoilMSFLRPLEGFIGMLQRLLGMLLPSLVVFFPVVCGSGMVCVRGKFVELGGSLVRVIWHGISLVSATS
Ga0210399_1140690713300020581SoilMGFLRPLKSFIGMFQRLLGMLVSGLVIFFTVVCGGGTVRVCGEFVEFGRSLV
Ga0210400_1073944413300021170SoilMSFLRPLGSFIGVFQGLLGKLVSGQVILFTMVSGGGTVCVCGEFVEFGSSLVGVVWLAVFLS
Ga0210405_1000425563300021171SoilMSFLRPLESFIGMFQGLSGMLLSRLVVFFPVVRGSGTVRVCGEFVELSSSLVRVIWHGISLPSTKS
Ga0210408_1000547253300021178SoilMSCLRPLESFIGMFQGLSGMLLSGLVVFFPVVCGSGTVRVCGEFVELSSSLVRVIWHGISLASTKS
Ga0210396_1072785223300021180SoilMSFLRPLESFIGMFQGLSGMLLSRLVVFFPVVRGSGTVRVCGEFVELSSSLVRVIW
Ga0210393_1144428323300021401SoilMCFLRPLGSFIGVFQGLLGKFVSGQMILFTMVRGGGTVCVCGEFVEFGSSLV
Ga0210384_1061355623300021432SoilMSCLRPLESFIGMFQGLSGMLLSGLVVFFAVVCGSGTVRVCGEFVELSSSLVRVIWHGISLASTKS
Ga0210391_1039119623300021433SoilMGFLRPLKGLVGVSKRLFGMVASGLVIFFPAVRCGDSVRVRGELLKFGSSLVRVIWHSTP
Ga0210402_1030017923300021478SoilMRVLRPLKGFVGMFQSLSGVLVSSLMIFFSVVSGGGAVRVCGELVVLGGSLVRVIWHEVQVLTA
Ga0210410_1016935813300021479SoilMGFLRPLESFIGMFQRLFGMLVSGLVIFFSVMRGGSTVGVCGEFVVFGSSLVRVAWHGVSYPW
Ga0210410_1053529023300021479SoilMSFLGPLESFIGMFQGLLGMLVPGLVIFFPVVCGGGTVRVRGEFVEFGSSLLRVIWHC
Ga0207646_1012619833300025922Corn, Switchgrass And Miscanthus RhizosphereMRFLRPLECFIGIFHSLLGMLVPGLVIFFPMVRGGCTVRVCGEFVELRSSLVRVIWHSAAYPR
Ga0257173_100632723300026360SoilMRLLRPLECFIGIFHGLLGMLVPGLVILFPMVRGGSTVRVGGEFVELRSSLVRVIWHSAAYPR
Ga0257172_109596123300026482SoilMGFLRPLESFIGMFQRLLGMLVSGLVIFFSVMRGGSTVRVCGEFVVFGSSLVRVVWHSVSYPWPPLHLGTIRF
Ga0209648_1080876623300026551Grasslands SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLDSIAS
Ga0209577_1037019513300026552SoilMSFLRSLESSVGMFQCLFGMLLSGLGTFFPVVRGGSMVRVCGEFVVLGSSSVRVIWHCVSHP
Ga0179593_103585013300026555Vadose Zone SoilMGFLRPLKSFIGMFQRLFGMLVSGLVIFFSVMRGGRTVGVCGEFVVFGSSLVRVAWHSVSYPWSPLHLGTIRFSKLYNK
Ga0209388_103880123300027655Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLDSTAS
Ga0209588_101239633300027671Vadose Zone SoilMRFLRPLECFIRIFHGLLGMLLPGLVIFFPMVRGGCTVRVCGKFVELRSSLVRVIWHSPAYPR
Ga0209588_102024443300027671Vadose Zone SoilMGFLRPLESFIGMFQRLFGMLVTGLVITFPVVRGGSTVRVCGEFVEFGSSLVRVVWHSEFDLQCPLHIGTISF
Ga0209588_102952833300027671Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVRVCGEFVEFGSSLVGVIWHDVSLNSTTS
Ga0209040_1023843123300027824Bog Forest SoilMRFLRPLESFIGMFHCLLGVFVSALVIFFPVVGGGSTMRVSGEFMEFGSSLVRVIWHSFSHPQ
Ga0209580_1034428223300027842Surface SoilMSFLRPLGSFIGVLQGLLGELVSGQVILFTMVRGGGTVCVCGEFVEFGSSLVRVVWH
Ga0209180_1002092223300027846Vadose Zone SoilMRFLRPLECFIGIFHGLLGMLVPGLVIFFPMVRGGSTVRVCGEFVELRSSLVRVIWHSAAYLR
Ga0209180_1007914043300027846Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVHVCGEFVEFGSSLVGVIWHDVSFNSTTS
Ga0209701_1059281123300027862Vadose Zone SoilMSFLRPLESFIGMFQRLFGMLVSGLVIFLGVVCGGGTVHVCGEFVEFGSSLVGVIWHDVSLDSTASYNYSTFQTVV
Ga0209283_1005416443300027875Vadose Zone SoilMSFLRPLRSFIRIFQRLFGKLVSGLVIFFPVVRGGSTVRVCGEFVVFGSSLVRLIWHR
Ga0209488_1003116133300027903Vadose Zone SoilMRFLRPLECLIGIFHGLFGMLVPGLVIFFPMVCGGSTVRVCGEFMELGSSLVRVIRHSATYPR
Ga0209006_1028171423300027908Forest SoilMSFLRCLESFIGIFKRLFGMLVSGLVIFFPVVYGGGTVRVCGEFVEFGSSLVRVLWHNIFHLRCHFRIIPFS
Ga0209526_1030041313300028047Forest SoilMSILRPLHRFRRMFQRLFGMLVPGLVIFFPVVRRGSSVHVGGEFVEFGSSLVRVIWHDIR
Ga0137415_1000904053300028536Vadose Zone SoilVSFLRPLESFIGMFQGLFGMLVSGLVIILCVVCSGGTVRVCGEFVEFGSSLVGVIWHDVSLNSTTS
Ga0073994_1004297923300030991SoilMSFLRPLESFIGMFQCLFGMFVSGLVIFFPVVRGGSTVRACGEFVELGSSLVRVI
Ga0138298_122914813300031015SoilMSFLRPLESFIGMFQCLFGMFMSGLVIFLPVVRGGSTVRVCGELVELGSSLVRVIWH
Ga0302325_1150649413300031234PalsaMSFFRRLESFIGMFKRLLGMLMSGVVIFFSVVHGGSAMRVCGEFVEFGSSLVRVFRHTVFHPLSSF
Ga0302324_10251599913300031236PalsaMSFFRRLESFIGMFKRLLGMLMSGVVIFFSVVHGGSAMRVCGEFVEFGSSLVRVFRHTV
Ga0310686_10103559533300031708SoilMSFLGRLERSIGMFKCLFGMLVSGLVIFFPVMHGGSTVHVCGEFVEFGSSLVRVLWHSIFHPRYHLRIIPLSQLSN
Ga0307474_1027020823300031718Hardwood Forest SoilMSFLRALEGFSGMFQRLSGVFVPGLVISFSVVYSGSTVGVCSKFVEFGSSLVRVIWHIYFPSCLTAPS
Ga0307477_1027230923300031753Hardwood Forest SoilMSFLRPLESFIGMFQGLSGMLLSGLVVFFPVVCGSGTVRVCGEFVELSSSLVRVIWHGISLASTKS
Ga0311301_1027309023300032160Peatlands SoilMSILRPLHGFTRMFQRLSGMLVPGLVIFFPVVRCGSPVRMCSELVKFGRSLVRVLWHNGSHPPCPPNLD
Ga0307471_10101775123300032180Hardwood Forest SoilMRFLRPLECLVGIFHGLLGMFVPGLVIFFPMVRGGRTVRVCGEFVELSSSLVRVIWHSAAYPR
Ga0307472_10009286833300032205Hardwood Forest SoilMSFLRPLEGFIGMFHGLLGMLVPSLVIFFSVVCGGSTVRMCGEFVELGGSLVRVIWHGISLPSVAS
Ga0326727_1044780333300033405Peat SoilMSFLRPLESLARMLQCLLGMFVSGLVIFFPVVRGRGAVRVCGELVEFGSSLVRFIWHNV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.