Metagenome / Metatranscriptome Family F073133

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073133
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	40 residues
Representative Sequence	MLASGKMVGFIPTKDYDKARAFYEGKLGFEFVSLDQF
Number of Associated Samples	104
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.83 %
% of genes near scaffold ends (potentially truncated)	97.50 %
% of genes from short scaffolds (< 2000 bps)	89.17 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (20.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.92% β-sheet: 0.00% Coil/Unstructured: 83.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02311	AraC_binding	25.00
PF12833	HTH_18	11.67
PF00174	Oxidored_molyb	5.83
PF00903	Glyoxalase	3.33
PF01833	TIG	1.67
PF08338	DUF1731	1.67
PF05973	Gp49	1.67
PF01061	ABC2_membrane	0.83
PF13495	Phage_int_SAM_4	0.83
PF12543	DUF3738	0.83
PF01261	AP_endonuc_2	0.83
PF08002	DUF1697	0.83
PF01053	Cys_Met_Meta_PP	0.83
PF00753	Lactamase_B	0.83
PF12704	MacB_PCD	0.83
PF02687	FtsX	0.83
PF13365	Trypsin_2	0.83
PF01740	STAS	0.83
PF13360	PQQ_2	0.83
PF04191	PEMT	0.83
PF01435	Peptidase_M48	0.83
PF13570	PQQ_3	0.83
PF07228	SpoIIE	0.83
PF04055	Radical_SAM	0.83
PF13847	Methyltransf_31	0.83
PF00196	GerE	0.83
PF04255	DUF433	0.83
PF00106	adh_short	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3915	Uncharacterized conserved protein	Function unknown [S]	5.83
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	5.83
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	1.67
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	1.67
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	1.67
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.83
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.83
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.83
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.50 %
Unclassified	root	N/A	7.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	65.00 %
Unclassified	root	N/A	7.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.83 %
Unclassified	root	N/A	7.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.00 %
Unclassified	root	N/A	7.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.00 %
Unclassified	root	N/A	7.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.83 %
Unclassified	root	N/A	7.50 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	1.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.83 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.83 %
Unclassified	root	N/A	7.50 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.83 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100325107	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300004092\|Ga0062389_104401310	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300004635\|Ga0062388_100144547	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300005176\|Ga0066679_10816631	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005363\|Ga0008090_15426605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300005548\|Ga0070665_101539786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	673	Open in IMG/M
3300005586\|Ga0066691_10939788	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005602\|Ga0070762_10268101	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300005921\|Ga0070766_11265287	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300007255\|Ga0099791_10543214	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300009038\|Ga0099829_10993627	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300009088\|Ga0099830_10130367	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300009088\|Ga0099830_11769185	Not Available	516	Open in IMG/M
3300009089\|Ga0099828_10028200	All Organisms → cellular organisms → Bacteria	4489	Open in IMG/M
3300009089\|Ga0099828_11041243	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300009520\|Ga0116214_1017710	All Organisms → cellular organisms → Bacteria	2533	Open in IMG/M
3300010325\|Ga0134064_10117459	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300010343\|Ga0074044_10471174	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010359\|Ga0126376_12907002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	529	Open in IMG/M
3300010360\|Ga0126372_10022437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3758	Open in IMG/M
3300010360\|Ga0126372_12032943	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300010376\|Ga0126381_103113569	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300011269\|Ga0137392_11078003	Not Available	659	Open in IMG/M
3300012189\|Ga0137388_11032495	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300012202\|Ga0137363_10901064	Not Available	751	Open in IMG/M
3300012923\|Ga0137359_10621100	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300012944\|Ga0137410_10187014	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300012944\|Ga0137410_10464854	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300012948\|Ga0126375_10601581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300012971\|Ga0126369_12481006	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300014156\|Ga0181518_10396631	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300014654\|Ga0181525_10386104	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300015051\|Ga0137414_1116217	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300015053\|Ga0137405_1322547	All Organisms → cellular organisms → Bacteria → Acidobacteria	1528	Open in IMG/M
3300016270\|Ga0182036_10045779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2717	Open in IMG/M
3300016270\|Ga0182036_11370511	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300016294\|Ga0182041_11700522	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300016387\|Ga0182040_10011716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4545	Open in IMG/M
3300017927\|Ga0187824_10060744	All Organisms → cellular organisms → Bacteria → Acidobacteria	1175	Open in IMG/M
3300017993\|Ga0187823_10381243	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300017994\|Ga0187822_10048524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300018007\|Ga0187805_10391156	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300018012\|Ga0187810_10161107	All Organisms → cellular organisms → Bacteria → Acidobacteria	903	Open in IMG/M
3300020580\|Ga0210403_10645139	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300020581\|Ga0210399_10314057	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300020581\|Ga0210399_10758254	Not Available	795	Open in IMG/M
3300020581\|Ga0210399_10834784	Not Available	751	Open in IMG/M
3300020583\|Ga0210401_11007023	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300020583\|Ga0210401_11556031	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300021170\|Ga0210400_11001106	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300021178\|Ga0210408_11492248	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300021181\|Ga0210388_11659315	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300021404\|Ga0210389_10448215	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300021404\|Ga0210389_11279592	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300021405\|Ga0210387_10598760	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300021406\|Ga0210386_11572362	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300021407\|Ga0210383_10771650	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300021420\|Ga0210394_10452770	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129	Open in IMG/M
3300021420\|Ga0210394_10983944	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300021432\|Ga0210384_10016158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7330	Open in IMG/M
3300021477\|Ga0210398_10277497	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300021559\|Ga0210409_10853166	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300021559\|Ga0210409_11096092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300023255\|Ga0224547_1036231	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300025922\|Ga0207646_11574929	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300026317\|Ga0209154_1056452	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300026320\|Ga0209131_1304896	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300026333\|Ga0209158_1291948	Not Available	560	Open in IMG/M
3300027497\|Ga0208199_1004739	All Organisms → cellular organisms → Bacteria	3554	Open in IMG/M
3300027583\|Ga0209527_1154010	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300027671\|Ga0209588_1231681	Not Available	568	Open in IMG/M
3300027862\|Ga0209701_10045941	All Organisms → cellular organisms → Bacteria → Acidobacteria	2814	Open in IMG/M
3300027875\|Ga0209283_10417751	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300027875\|Ga0209283_10423534	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300027884\|Ga0209275_10199316	Not Available	1082	Open in IMG/M
3300027884\|Ga0209275_10749948	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300028379\|Ga0268266_11812184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	585	Open in IMG/M
3300028745\|Ga0302267_10475016	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300028765\|Ga0302198_10038272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3082	Open in IMG/M
3300028775\|Ga0302231_10239102	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300028788\|Ga0302189_10080467	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1519	Open in IMG/M
3300028789\|Ga0302232_10524962	All Organisms → cellular organisms → Bacteria → FCB group	582	Open in IMG/M
3300028906\|Ga0308309_11277220	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300029883\|Ga0311327_10062419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2885	Open in IMG/M
3300029910\|Ga0311369_10384987	All Organisms → cellular organisms → Bacteria → Acidobacteria	1222	Open in IMG/M
3300029914\|Ga0311359_10603791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	808	Open in IMG/M
3300029919\|Ga0302141_1124127	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300029943\|Ga0311340_10759001	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300029952\|Ga0311346_10156915	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2678	Open in IMG/M
3300030007\|Ga0311338_11691831	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300030043\|Ga0302306_10125437	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300030044\|Ga0302281_10011350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	5522	Open in IMG/M
3300030399\|Ga0311353_11015801	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300030399\|Ga0311353_11323333	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300030509\|Ga0302183_10186663	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300030519\|Ga0302193_10033700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3505	Open in IMG/M
3300030519\|Ga0302193_10329891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300030617\|Ga0311356_10618661	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300030693\|Ga0302313_10189104	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300030737\|Ga0302310_10571364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	600	Open in IMG/M
3300031236\|Ga0302324_102801084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300031258\|Ga0302318_10207660	All Organisms → cellular organisms → Bacteria → Acidobacteria	945	Open in IMG/M
3300031261\|Ga0302140_10421711	Not Available	1066	Open in IMG/M
3300031525\|Ga0302326_10603644	All Organisms → cellular organisms → Bacteria → Acidobacteria	1631	Open in IMG/M
3300031561\|Ga0318528_10780191	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300031668\|Ga0318542_10255173	All Organisms → cellular organisms → Bacteria → Acidobacteria	892	Open in IMG/M
3300031708\|Ga0310686_114606079	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300031718\|Ga0307474_10385166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1089	Open in IMG/M
3300031771\|Ga0318546_10338401	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300031771\|Ga0318546_11017976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300031788\|Ga0302319_11515450	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300031796\|Ga0318576_10637425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031946\|Ga0310910_10475040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300032059\|Ga0318533_10852255	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300032076\|Ga0306924_11091995	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300032091\|Ga0318577_10535317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300032094\|Ga0318540_10313083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300032160\|Ga0311301_12202786	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300032783\|Ga0335079_10248383	All Organisms → cellular organisms → Bacteria → Acidobacteria	1958	Open in IMG/M
3300033290\|Ga0318519_10734605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.83%
Aquatic	Environmental → Aquatic	7.50%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.50%
Peat	Environmental → Terrestrial → Peat	23.33%
Freshwater	Environmental → Aquatic → Freshwater	7.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.50%
Loam	Environmental → Terrestrial → Soil → Loam	6.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.67%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.33%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029919	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1003251073	3300002245	Forest Soil	MGNSGGGMLTSGKLVGFLITTDYEKARAFYEGKLGFEFVSLDQFALA
Ga0062389_1044013101	3300004092	Bog Forest Soil	MLTAGKMVGFLVTTDYEKARTFYEGKLGFEFVSLDQFALA
Ga0062388_1001445475	3300004635	Bog Forest Soil	VLASIEMIGFLLTKDYEQARTFYEGNLGFEFVSLDQFALVM
Ga0066679_108166311	3300005176	Soil	MLASGKMVGFVPTTDYDQARAFYEGKLEFDFVSLDQYALVVSVG
Ga0008090_154266052	3300005363	Tropical Rainforest Soil	MLASGKMVGFVPTRDYDKARAFYQDQLGFEFVSLDQYALVMSVGGHKV
Ga0070665_1015397862	3300005548	Switchgrass Rhizosphere	MLASCRMMGFVVTTDYDKARAFYEGGLGFEFVSVDE
Ga0066691_109397883	3300005586	Soil	MLSGNMVGFVLTKDYAKARAFFEGKLGFQFVSQDQFALA
Ga0070762_102681013	3300005602	Soil	MLAAMNMVGFLLTKDYDKSRAFYEGNLGFEFVSLDQFALVM
Ga0070766_112652872	3300005921	Soil	MLASMKMAGFLLTKDYEKARAFYEGNLGFEFVSLDQFALVMQAGKSM
Ga0099791_105432141	3300007255	Vadose Zone Soil	MLADSKIVGFIFTRDYDNARAFYEGKLGFQFVSQDQFALAVRT
Ga0099829_109936272	3300009038	Vadose Zone Soil	MLTTGKMIGFVLTKDYDKAREFYEQKLGFEFVSHDQHALVVR
Ga0099830_101303671	3300009088	Vadose Zone Soil	MLASGKVVGFLLTKDYDKARAFFEGALGFQFVSVDQYALVMNAGGTM
Ga0099830_117691852	3300009088	Vadose Zone Soil	MLSGSMIGFVLTKDYAKARAFFEGKLGFQFVSQDQFALAM
Ga0099828_100282001	3300009089	Vadose Zone Soil	MLAAGEMIGFVHTTDYDKARDFYEGKLGFEFVSLDKFALVMSVGGHMIRI
Ga0099828_110412431	3300009089	Vadose Zone Soil	MLASGKVVGSLLTKDYDKARAFFEGALGFQFVSVDQYAMVMNAG
Ga0116214_10177101	3300009520	Peatlands Soil	MLASGKLTGFIPTKDYDKARTFYVDKLGFEFVSLDQFALVLSLGGHKF
Ga0134064_101174591	3300010325	Grasslands Soil	MMLASGKMVGFVPTTDYDQARAFYEGKLEFDFVSLDQYALV
Ga0074044_104711741	3300010343	Bog Forest Soil	MIGFLLTKDYEQARTFYEGNLGFEFVSLDQFALVMQAGKSM
Ga0126376_129070021	3300010359	Tropical Forest Soil	MLDSGKMVGFVPTTDYDKAREFYEGKLQFKFVSLDQY
Ga0126372_100224371	3300010360	Tropical Forest Soil	MLASGKMVGFVPTRDYEKARAFYQDQLGFEFVSLDQYALVM
Ga0126372_120329432	3300010360	Tropical Forest Soil	MLDSGKLAGFLATTDYDRAREFYEGKLGFKFLSLDQY
Ga0126381_1031135691	3300010376	Tropical Forest Soil	MLASGRLSGFLATTDYDKAREFYEGKLGFEFVSLD
Ga0137392_110780033	3300011269	Vadose Zone Soil	MLSGSMIGFVLTKDYARARAFFEGMLGFQFVSQDQFALAMKAGGNM
Ga0137388_110324951	3300012189	Vadose Zone Soil	MLAFGKIVGFLLTKDYDKARAFFEGALGFQFVSVDQYAMVMNAG
Ga0137363_109010641	3300012202	Vadose Zone Soil	MPDKSKMVGFVPTTDYEAAREFYVGKLGFTFVSLDQFA
Ga0137359_106211002	3300012923	Vadose Zone Soil	MLASAKMVGFIPTKDYDKARAFYEGKLGFKFVSLDNLPWS*
Ga0137410_101870143	3300012944	Vadose Zone Soil	MLAAGKMVGFIPTKDYDKARAFYEGKLGFEFVSLD
Ga0137410_104648542	3300012944	Vadose Zone Soil	MLASGKMVGFIPTKDYDKARAFYEGKLGFEFVSLDQF
Ga0126375_106015813	3300012948	Tropical Forest Soil	GKMLASGKMVGFIPTRDYDKARAFYQNLLGFEFVS*
Ga0126369_124810061	3300012971	Tropical Forest Soil	MLGSGKMVAFIPTTDYGKARAFYERQLEFEFVSLDQYALVMRIG
Ga0181518_103966311	3300014156	Bog	MLDSAKMVGFIPTKDYDKARAFFEGKLGFEFVRLDQFALVVSVGGHKIR
Ga0181525_103861042	3300014654	Bog	MLISGKLVGFLMTTDYDKARAFFENKLGFKFVSLDQFALVMRSGENQI
Ga0137414_11162171	3300015051	Vadose Zone Soil	MLASAKMVGFIPTTDYDKARSFYEGKLGFEFVSLDK
Ga0137405_13225472	3300015053	Vadose Zone Soil	MLASGKMVGFIPTKDYDKARAFYEGNLGLEFVSLDKLPWS*
Ga0182036_100457794	3300016270	Soil	MLESGKLAGFLATTDYDKAREFYEGKLGFEFVSLALYALVM
Ga0182036_113705112	3300016270	Soil	MVGFVITTDYEKARAFYEGKLGFKFVSLDQFALVM
Ga0182041_117005222	3300016294	Soil	MLESGKLAGFLATTDYDKARKFYEGKLGFEFISLDHYALVMRVGGHS
Ga0182040_100117168	3300016387	Soil	MLASAKMVGFVPTSDYDNARAFYEKKLGFEFVSLDQ
Ga0187824_100607441	3300017927	Freshwater Sediment	MLAAGKLTGFIPTRDYDKARAFYVDKLGFEFVSLD
Ga0187823_103812431	3300017993	Freshwater Sediment	MLAAGKLTGFIPTRDYEKARAFYVDKLGFEFVSLDQFA
Ga0187822_100485243	3300017994	Freshwater Sediment	MLTTGKLVGFLLTKEYERARGFYEGKLGFEFVSLDQFALVMRAGE
Ga0187805_103911562	3300018007	Freshwater Sediment	MLSFGNMVGFLLTRDYDKARDFFEGKLGFQFVSVDQFALVM
Ga0187810_101611071	3300018012	Freshwater Sediment	MLSFGNMVGFLLTRDYDKARYFFEGKLGFQVVSVDQFALV
Ga0210403_106451391	3300020580	Soil	MLASGKMTGFVLTKDYDKSRAFYEGKLGFKFVSLDQFALVMN
Ga0210399_103140571	3300020581	Soil	MLASTNMMGFLLTKDYEKARAFYQGNLGFEFLSLD
Ga0210399_107582542	3300020581	Soil	MLASMDMIGFLLTKDYEKARSFYEGNLGFEFVSLDQFALVMQAGKSMIRIVKD
Ga0210399_108347841	3300020581	Soil	MLADMKMMGFLLTKDYDKARAFYEGNLGFEFVSLDKFALVMRA
Ga0210401_110070231	3300020583	Soil	MLAAAKMVGFLLTKDYDRARAFFEGQLGFQFVSLDQFALVMSVGGHNIR
Ga0210401_115560311	3300020583	Soil	MLASSKMAGFVLTKDYDKARAFYEGKMGFEFVSLDQFAL
Ga0210400_110011061	3300021170	Soil	MLASAKLVGFIPTKDYDKARAFYEGKLGFEFVSLDQF
Ga0210408_114922481	3300021178	Soil	MLTSGRIVGFVLTKDYEKARAFFEGKLGFAFVSLDQFALVMKAGEHMIRISKV
Ga0210388_116593151	3300021181	Soil	MLDSGKMVGFVPTTDYEKARDFYLGKLGFEFISLDQFALAVKV
Ga0210389_104482151	3300021404	Soil	MLASMEMIGFLLTKDYEKSRAFYEGKLGFEFVSLDQFA
Ga0210389_112795921	3300021404	Soil	MLASMDMVGFLLTRDYDKARAFYEGKLGFEFVSLDQF
Ga0210387_105987601	3300021405	Soil	MLASMSMIGFLLTKDYEKARAFYEGTLGFEFVSLDQF
Ga0210386_115723622	3300021406	Soil	MLDKSKMVGFVPTKDYEAAREFYVGKLGFAFVSLDQFALV
Ga0210383_107716502	3300021407	Soil	MLASAKMVGFIPTTDYHKARAFYEGQLGFTFVSLDQF
Ga0210394_104527702	3300021420	Soil	MLASMEMVGFLLTKDYEKARGFYEGNLGFDFVSLDQFALVMQAGKNTIRIVKVPDFTPL
Ga0210394_109839442	3300021420	Soil	MLASGKMVGFVLTKDYEKARAFYEGKLRFEFVSLDQFA
Ga0210384_100161583	3300021432	Soil	MLASGKMVGFVLTKDYEQARAFYEGKLGFEFVSLDQFALAMKVGGHS
Ga0210398_102774971	3300021477	Soil	MLASGKMVGFVLTKDYDQARAFYEGKLGFEFVSQDQFA
Ga0210409_108531662	3300021559	Soil	MLASMNMMGFVLTKDYDKARVFYESNLGFEFVSLDKFALVMKAGKSMIRIVKVP
Ga0210409_110960921	3300021559	Soil	MLAAAKMVGFLLTKDYDRARAFFEGQLGFQFVSLDQFALVMSVGGHNIRIVKVPN
Ga0224547_10362312	3300023255	Soil	MLASAKMVGFVPTKDYDKARAFYEGKLGCDFVSLDQFAL
Ga0207646_115749292	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLSAGKLVGFVLTKDYEQARAFYEGKLGFEFVSLD
Ga0209154_10564521	3300026317	Soil	MLASGKMVGFIPTKDYDKARAFYEGKLGFEFVSLDKFA
Ga0209131_13048962	3300026320	Grasslands Soil	MLASGKMVGFIPTKDYDKARAFYGGKLGLEFVSLDKFA
Ga0209158_12919481	3300026333	Soil	MLSGNMVGFVLTKDYAKARAFFEGKLGFQFVSQDQFALAMK
Ga0208199_10047391	3300027497	Peatlands Soil	MLASGKLTGFIPTKDYDKARTFYVDKLGFEFVSLDQFALVLSLG
Ga0209527_11540102	3300027583	Forest Soil	MLGSANMVGFIPTKDYDKARSFYEGKLGFEFESLDKFA
Ga0209588_12316811	3300027671	Vadose Zone Soil	MLSGNMVGFVLTKDYAKARAFFEGKLGFQFVSQDQFALAMKAG
Ga0209701_100459411	3300027862	Vadose Zone Soil	MLASGKVVGFLLTKDYDKARTFFEGALGFQFVSVDQYAMVMN
Ga0209283_104177513	3300027875	Vadose Zone Soil	MLSGNMVGFVLTKDYAKARAFFEGKLGFQFVSQDQFALAMKAGGNM
Ga0209283_104235341	3300027875	Vadose Zone Soil	MLASGKMVGFIPTKDYDKARAFYEGKLGLEFVSLDK
Ga0209275_101993162	3300027884	Soil	MLAAMNMVGFLLTKDYDKSRAFYEGNLGFEFVSLDQFA
Ga0209275_107499481	3300027884	Soil	MLTSGKMVGFVATTDYGKARDFYEGKLGFEFISLD
Ga0268266_118121842	3300028379	Switchgrass Rhizosphere	MLASCRMMGFVVTTDYDKARAFYEGELGFEFVSVDEFAMVV
Ga0302267_104750161	3300028745	Bog	MLASGKLVGFVPTTDYEKARAFYEGKLEFEFISLDQFALVVKV
Ga0302198_100382725	3300028765	Bog	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLDQFAL
Ga0302231_102391022	3300028775	Palsa	MLASAKMVGFVHTTDYEQARAFYEGKLGMEFIDLNPFALVM
Ga0302189_100804673	3300028788	Bog	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLDQ
Ga0302232_105249622	3300028789	Palsa	MLASAKMVGFVHTTDYEQARAFYEGKVGMEFIDLNP
Ga0308309_112772201	3300028906	Soil	MLASMNMVGFLLTKDYDKARAFYEGKLGFKFVSLDQFALV
Ga0311327_100624194	3300029883	Bog	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLDQFALALRAG
Ga0311369_103849872	3300029910	Palsa	MLTAGKLVGFLTTTDYEKARAFYEGKLGFEFLSLD
Ga0311359_106037911	3300029914	Bog	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLDQFALA
Ga0302141_11241272	3300029919	Bog	LTANKLIGFLTTTDYEKARAFYEGKLGFEFVSLDQ
Ga0311340_107590012	3300029943	Palsa	MLTAGKLVGFLTTTDYEKARAFYEGKLGFEFLSLDQFALALR
Ga0311346_101569151	3300029952	Bog	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLDQFALALR
Ga0311338_116918312	3300030007	Palsa	MLTAGKLVGFLTTTDYQKARDFYEGKLGFDFVSLDAF
Ga0302306_101254372	3300030043	Palsa	MLSSAKLAGFIITNDYDAARSFYVDRLGFEFVSLDQYA
Ga0302281_100113506	3300030044	Fen	MLTASKLVGFITATDYEKARAFYEGKLGFEFVSLD
Ga0311353_110158012	3300030399	Palsa	MLAASKLVGFLTTTDYDKARAFYEGKLGFAFVSLDQ
Ga0311353_113233331	3300030399	Palsa	MVTSGKMVGFLTTTDYEKARAFYVGKLGFAFLSLDQFAL
Ga0302183_101866631	3300030509	Palsa	MLSSAKLAGFIITNDYDAARSFYVDRLGFEFVSLDQYALVV
Ga0302193_100337005	3300030519	Bog	MLTANKLIGFLTTTDYEKARAFYEGKLGFEFVSLDQFA
Ga0302193_103298912	3300030519	Bog	MFYPGKLVGFLTTTDYDKARAFYEGKLGFEFISLDQFAL
Ga0311356_106186611	3300030617	Palsa	MFHPGKLVGFLSTTDYEKARAFYEGKLGFEFVSLD
Ga0302313_101891042	3300030693	Palsa	MLDAGKMVGFVPTSDYDRSRAFYEGKLGCEFVSLDPYAL
Ga0302310_105713641	3300030737	Palsa	MLTANKLVGFITTTDYEKARAFYEGKLGFEFLKLDQF
Ga0302324_1028010841	3300031236	Palsa	MLASGKLTGFVPTADYDKARAFYEGKLGFEFVSLD
Ga0302318_102076601	3300031258	Bog	MLTANRLIGFLTTTDYEKARAFFEGKLGFEFVSLDQFALAVR
Ga0302140_104217111	3300031261	Bog	MLTAGRMVGFLTTTDYEKARAFYEGKLGFEFISLDQFALA
Ga0302326_106036443	3300031525	Palsa	MLTVNELVGFLTTTDYEKARAFYGGKLGFEFVSLDQFALAMRAGKNMIRI
Ga0318528_107801911	3300031561	Soil	VLASAKLVGFVPTKDYEQARAFYEGKLGFDFVSLDQ
Ga0318542_102551733	3300031668	Soil	MLASGKMVGFVPTRDYDKARAFFQDQLGFEFVGLDQYALLM
Ga0310686_1146060792	3300031708	Soil	MLTVNELVGFLTTTDYEKARAFYGGKLGFEFVSLDQFALAMRAG
Ga0307474_103851661	3300031718	Hardwood Forest Soil	MLSSCNLVGFLVTKDYDKARAFFETKLGFQFISLDQYALA
Ga0318546_103384012	3300031771	Soil	MLASGKMVGFVPTRDYEKARAFYQDQLGFEFVSLDQY
Ga0318546_110179761	3300031771	Soil	MLESGKMAGFLATSDYDKAREFYEGKLGFAFVSLDQYALVMEVG
Ga0302319_115154501	3300031788	Bog	MLISGKLVGFLMTTDYDKARTFFESKLGFEFVSLDQFA
Ga0318576_106374251	3300031796	Soil	MLASGKMVGFVPTRDYDKARAFFQDQLGFEFVGLD
Ga0310910_104750401	3300031946	Soil	MLESGKMAGFLATSDYDKAREFYEGKLGFAFVSLDQYALVMEVGGHSIRISKIPDF
Ga0318533_108522552	3300032059	Soil	MVGFVITTDYEKARAFYEGKLGFKFVSLDQFALVMK
Ga0306924_110919953	3300032076	Soil	MLESGKLAGFLATTDYDKARKFYEGKLGFEFISLDH
Ga0318577_105353172	3300032091	Soil	MLASGKMVGFVPTRDYEKARAFYQDQLGFEFVSLDQ
Ga0318540_103130831	3300032094	Soil	MLAKSKLVGFVPTKDYEAARGFYEGKLGFAFASQDQFALVVRA
Ga0311301_122027861	3300032160	Peatlands Soil	MLESGKMAGFVLTKDYEQARAFYEGKLGFEFVSLDEFALAMRV
Ga0335079_102483831	3300032783	Soil	MLAAAKLMGFVLTKDYEKARAFYEGKVGMTFVSLDQF
Ga0318519_107346052	3300033290	Soil	MLGSGKMVAFIPTTDYEKARAFYERHLGFEFVSLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073133

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences