Metagenome / Metatranscriptome Family F073129

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	40 residues
Representative Sequence	EAKPGDLLLIMSNGSFDGLCEKLLKKLGASVQLAGEAKTR
Number of Associated Samples	100
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.94% β-sheet: 0.00% Coil/Unstructured: 72.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF05299	Peptidase_M61	26.67
PF13180	PDZ_2	10.83
PF01553	Acyltransferase	2.50
PF02899	Phage_int_SAM_1	1.67
PF04613	LpxD	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	26.67
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	26.67
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	1.67
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	1.67
COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	89.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12294885	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300001159\|JGI12650J13346_1002249	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300001593\|JGI12635J15846_10151232	All Organisms → cellular organisms → Bacteria → Acidobacteria	1591	Open in IMG/M
3300001593\|JGI12635J15846_10265361	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300002245\|JGIcombinedJ26739_100281473	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300004479\|Ga0062595_100329413	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300005174\|Ga0066680_10523144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	746	Open in IMG/M
3300005451\|Ga0066681_10314639	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005586\|Ga0066691_10188471	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300005602\|Ga0070762_11037974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	563	Open in IMG/M
3300005764\|Ga0066903_100260564	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2690	Open in IMG/M
3300006050\|Ga0075028_100833608	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300007265\|Ga0099794_10425087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300009038\|Ga0099829_10277162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1371	Open in IMG/M
3300009038\|Ga0099829_10347055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1222	Open in IMG/M
3300009088\|Ga0099830_10454596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300009088\|Ga0099830_11024662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300009088\|Ga0099830_11790473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300009089\|Ga0099828_11036761	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300009090\|Ga0099827_10069910	All Organisms → cellular organisms → Bacteria	2706	Open in IMG/M
3300009137\|Ga0066709_100843623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1331	Open in IMG/M
3300009549\|Ga0116137_1008884	All Organisms → cellular organisms → Bacteria	4329	Open in IMG/M
3300009683\|Ga0116224_10659314	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300010048\|Ga0126373_10924279	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300010048\|Ga0126373_11483886	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300010360\|Ga0126372_10035584	All Organisms → cellular organisms → Bacteria → Acidobacteria	3192	Open in IMG/M
3300010361\|Ga0126378_12265129	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300010398\|Ga0126383_10468752	All Organisms → cellular organisms → Bacteria → Acidobacteria	1312	Open in IMG/M
3300011269\|Ga0137392_11009958	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300012189\|Ga0137388_11883829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300012205\|Ga0137362_10124089	All Organisms → cellular organisms → Bacteria → Acidobacteria	2192	Open in IMG/M
3300012205\|Ga0137362_10409396	All Organisms → cellular organisms → Bacteria → Acidobacteria	1175	Open in IMG/M
3300012205\|Ga0137362_10882836	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300012208\|Ga0137376_10371948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1241	Open in IMG/M
3300012349\|Ga0137387_10137921	All Organisms → cellular organisms → Bacteria → Acidobacteria	1730	Open in IMG/M
3300012359\|Ga0137385_11272419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300012362\|Ga0137361_11054777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300012363\|Ga0137390_10167237	All Organisms → cellular organisms → Bacteria → Acidobacteria	2186	Open in IMG/M
3300012363\|Ga0137390_10188502	All Organisms → cellular organisms → Bacteria → Acidobacteria	2049	Open in IMG/M
3300012918\|Ga0137396_10496063	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300012925\|Ga0137419_11693565	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300012929\|Ga0137404_10682404	All Organisms → cellular organisms → Bacteria → Acidobacteria	928	Open in IMG/M
3300012944\|Ga0137410_10642872	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300012944\|Ga0137410_10790863	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300012948\|Ga0126375_11376152	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300012971\|Ga0126369_10006705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8583	Open in IMG/M
3300012989\|Ga0164305_10926713	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300013832\|Ga0120132_1135084	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300014200\|Ga0181526_10368467	All Organisms → cellular organisms → Bacteria → Acidobacteria	913	Open in IMG/M
3300015241\|Ga0137418_10067060	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3274	Open in IMG/M
3300015264\|Ga0137403_11332662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300016371\|Ga0182034_11137599	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300016404\|Ga0182037_11718326	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300016422\|Ga0182039_10697746	All Organisms → cellular organisms → Bacteria → Acidobacteria	895	Open in IMG/M
3300018006\|Ga0187804_10546342	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300019887\|Ga0193729_1030514	All Organisms → cellular organisms → Bacteria → Acidobacteria	2278	Open in IMG/M
3300020170\|Ga0179594_10202764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300020579\|Ga0210407_10992863	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300020579\|Ga0210407_11488243	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300020580\|Ga0210403_10037100	All Organisms → cellular organisms → Bacteria → Acidobacteria	3896	Open in IMG/M
3300020581\|Ga0210399_10113995	All Organisms → cellular organisms → Bacteria → Acidobacteria	2217	Open in IMG/M
3300020581\|Ga0210399_10331722	All Organisms → cellular organisms → Bacteria → Acidobacteria	1270	Open in IMG/M
3300020583\|Ga0210401_10335776	All Organisms → cellular organisms → Bacteria → Acidobacteria	1373	Open in IMG/M
3300021170\|Ga0210400_10202509	All Organisms → cellular organisms → Bacteria → Acidobacteria	1614	Open in IMG/M
3300021171\|Ga0210405_10152569	All Organisms → cellular organisms → Bacteria → Acidobacteria	1829	Open in IMG/M
3300021178\|Ga0210408_10425567	All Organisms → cellular organisms → Bacteria → Acidobacteria	1057	Open in IMG/M
3300021180\|Ga0210396_10004710	All Organisms → cellular organisms → Bacteria	13291	Open in IMG/M
3300021401\|Ga0210393_10271113	All Organisms → cellular organisms → Bacteria → Acidobacteria	1377	Open in IMG/M
3300021403\|Ga0210397_10466836	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300021432\|Ga0210384_10043046	All Organisms → cellular organisms → Bacteria	4137	Open in IMG/M
3300021478\|Ga0210402_10808938	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300021479\|Ga0210410_10464850	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300021559\|Ga0210409_10536489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1035	Open in IMG/M
3300021559\|Ga0210409_11289918	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300022533\|Ga0242662_10165450	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300024271\|Ga0224564_1103058	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300024330\|Ga0137417_1029639	All Organisms → cellular organisms → Bacteria → Acidobacteria	1338	Open in IMG/M
3300025477\|Ga0208192_1022232	All Organisms → cellular organisms → Bacteria → Acidobacteria	1506	Open in IMG/M
3300026313\|Ga0209761_1287964	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300026317\|Ga0209154_1070417	All Organisms → cellular organisms → Bacteria → Acidobacteria	1521	Open in IMG/M
3300026324\|Ga0209470_1253691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300026482\|Ga0257172_1013639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1373	Open in IMG/M
3300026507\|Ga0257165_1097315	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300026538\|Ga0209056_10306789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300026547\|Ga0209156_10092715	All Organisms → cellular organisms → Bacteria → Acidobacteria	1513	Open in IMG/M
3300026547\|Ga0209156_10484923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300026557\|Ga0179587_10432880	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300026909\|Ga0207858_1023606	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300026945\|Ga0207743_1010607	All Organisms → cellular organisms → Bacteria → Acidobacteria	995	Open in IMG/M
3300027671\|Ga0209588_1029922	All Organisms → cellular organisms → Bacteria → Acidobacteria	1738	Open in IMG/M
3300027678\|Ga0209011_1021643	All Organisms → cellular organisms → Bacteria → Acidobacteria	2080	Open in IMG/M
3300027681\|Ga0208991_1251460	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300027862\|Ga0209701_10028088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3663	Open in IMG/M
3300027862\|Ga0209701_10055112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2541	Open in IMG/M
3300027862\|Ga0209701_10613685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300027875\|Ga0209283_10145662	All Organisms → cellular organisms → Bacteria → Acidobacteria	1569	Open in IMG/M
3300027884\|Ga0209275_10744474	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300027895\|Ga0209624_10829283	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300027903\|Ga0209488_11043983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300028536\|Ga0137415_10992975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300028800\|Ga0265338_10812062	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300029636\|Ga0222749_10504929	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300030862\|Ga0265753_1138615	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300031708\|Ga0310686_108192381	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300031718\|Ga0307474_11285551	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300031744\|Ga0306918_10005008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7017	Open in IMG/M
3300031754\|Ga0307475_10243844	All Organisms → cellular organisms → Bacteria → Acidobacteria	1439	Open in IMG/M
3300031779\|Ga0318566_10626986	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300031823\|Ga0307478_10265172	All Organisms → cellular organisms → Bacteria → Acidobacteria	1399	Open in IMG/M
3300031912\|Ga0306921_10179859	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
3300031912\|Ga0306921_11376919	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300031962\|Ga0307479_10586550	All Organisms → cellular organisms → Bacteria → Acidobacteria	1097	Open in IMG/M
3300031962\|Ga0307479_11788778	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300032059\|Ga0318533_10644976	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300032180\|Ga0307471_101139649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	945	Open in IMG/M
3300032180\|Ga0307471_101316372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300032180\|Ga0307471_101500840	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300032180\|Ga0307471_101629042	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300032783\|Ga0335079_10107697	All Organisms → cellular organisms → Bacteria → Acidobacteria	3153	Open in IMG/M
3300033547\|Ga0316212_1040880	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.17%
Aquatic	Environmental → Aquatic	4.17%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Freshwater	Environmental → Aquatic → Freshwater	3.33%
Sediment	Environmental → Aquatic → Sediment	0.83%
Roots	Host-Associated → Plants → Roots	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.33%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001159	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025477	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_122948852	3300000789	Soil	DLLAAEAKSGDIFLIMSNGSFDGLCEKLLKKLSARQIPSEANAR*
JGI12650J13346_10022491	3300001159	Forest Soil	LLAAEAKPGDLLLIMSNGSFDGLCEKLLKKLAARHTTSGVNAR*
JGI12635J15846_101512321	3300001593	Forest Soil	DLLLVMSNGSFDGLCEKLAKKLGDEVRVPSEATSR*
JGI12635J15846_102653611	3300001593	Forest Soil	LLLVMSNGSFDGLCEKLLKRLALPATLPSEASVK*
JGIcombinedJ26739_1002814731	3300002245	Forest Soil	XAEQISAEAESGDVLLVMSNGSFDGLCEKLLAKLGQPVQVSSEANTR*
Ga0062595_1003294131	3300004479	Soil	LAAEAKSGDIFLIMSNGSFDGLCEKLLKKLSARQIPSEANAR*
Ga0066680_105231442	3300005174	Soil	REAKPGDLLLLMSNGSFDGLCEKLVKKLEAAASLRPEANLR*
Ga0066681_103146392	3300005451	Soil	LASEAKPGDLLLIMSNGSFDGLCEKLLKKLSSAGPVPSEAKAQ*
Ga0066691_101884712	3300005586	Soil	GDLLLIMSNGSFDGLCEKLLKKLGAAAQLAGEAKPR*
Ga0070762_110379741	3300005602	Soil	AEAEAGDVLLVMSNGSFDGLCEKLLTKLGQPVQVSSEANIR*
Ga0066903_1002605641	3300005764	Tropical Forest Soil	LLLIMSNGSFDGLCEKLLKKLSSAGGPIPSEAKAR*
Ga0075028_1008336081	3300006050	Watersheds	GAEAKPGDVLLIMSNGSFDGLCEKLLKKLGVAAQLVGEAKTR*
Ga0099794_104250871	3300007265	Vadose Zone Soil	VKPGDLLLIMSNGSFDGLCDKLLKKLGATQLAGEAKTK*
Ga0099829_102771621	3300009038	Vadose Zone Soil	KPGDLLLIMSNGSFDGLCEKVMKKLGVTVQLAGEAKTR*
Ga0099829_103470552	3300009038	Vadose Zone Soil	GAEAKPGDLLLIMSNGSFDGLCEKVLKKLGAAVELAGEAKTQ*
Ga0099830_104545962	3300009088	Vadose Zone Soil	GDLLLIMSNGSFDGLCEKVLKRLGAAVELAGEAKTR*
Ga0099830_110246621	3300009088	Vadose Zone Soil	PGDLLLIMSNGSFDGLCEKLLKKLSTVAQPAGEAKTR*
Ga0099830_117904732	3300009088	Vadose Zone Soil	DFLSRETQAGDLVLIMSNGSFDGLCEKLVKRLDRGVAVPSGASIR*
Ga0099828_110367612	3300009089	Vadose Zone Soil	LAAEARAGDLLLIMSNGSFDGLCEKLLKRLGTAAQVPSEAKAR*
Ga0099827_100699101	3300009090	Vadose Zone Soil	ARAGDVLLIMSNGSFDGLCEKLLKKLSTAAQLADEAKTR*
Ga0066709_1008436232	3300009137	Grasslands Soil	LGAESKPGDLLLIMSNGSFDGLCEKVLKKLGASQLAGEAKTR*
Ga0116137_10088845	3300009549	Peatland	EARPGDLLLVMSNGNFDGLCEKLLKKLAARQIPTGAQTN*
Ga0116224_106593141	3300009683	Peatlands Soil	EARPGDVLLIMSNGSFDGLCETLLKKLSARQIPSEANAR*
Ga0126373_109242791	3300010048	Tropical Forest Soil	FLLAESRPGDLLLIMSNGSFDGLCEKLLSRLAKRLPSEARTR*
Ga0126373_114838862	3300010048	Tropical Forest Soil	SRPGDLLLIMSNGSFDGLCEKLLGRLSKRLPSEAHTL*
Ga0126372_100355844	3300010360	Tropical Forest Soil	AQPGDLLLIMSNGSFDGLCEKLLKRLAAAHSTTGANAR*
Ga0126378_122651291	3300010361	Tropical Forest Soil	KAGDLLLIMSNGSFDGLCERLVKRLSASGQTPSEAKAR*
Ga0126383_104687522	3300010398	Tropical Forest Soil	VREAQPGDLLVLMSNGSFDGLCDKLTQKLEAAASSETALRPEARLR*
Ga0137392_110099581	3300011269	Vadose Zone Soil	DLFLIMSNGSFDGLCEKLLKKLGSSVPVGSEAKTR*
Ga0137388_118838291	3300012189	Vadose Zone Soil	PGDLLLIMSNGSFDGLCEKVLKKLGAAVELVGEAKTR*
Ga0137362_101240893	3300012205	Vadose Zone Soil	ARPGDLLLIMSNGSFDGLCEKLVKKLDRNAVVPSEAPAR*
Ga0137362_104093961	3300012205	Vadose Zone Soil	GDLLLIMSNGSFDGLCEKLVKKLDRNAVVPSEAPTR*
Ga0137362_108828362	3300012205	Vadose Zone Soil	EARAGDLFLIMSNGSFDGLCEKLLKRLGAAVPVGSEAKTR*
Ga0137376_103719481	3300012208	Vadose Zone Soil	KPGDLLLIMSNGSFDGLCEKVLTKLGAASQLAGEARTR*
Ga0137387_101379212	3300012349	Vadose Zone Soil	RSAKPGDLLLIMSNGSFDGLCEKLLKKLGSPGQIPDEAKAR*
Ga0137385_112724191	3300012359	Vadose Zone Soil	AKPGDVLLIMSNGSFDGLCEKVLKKLGGAVQVAGGAKTR*
Ga0137361_110547771	3300012362	Vadose Zone Soil	EHLEAEVKPGDLLLIMSNGSFDGLCEKLLKKLGTAAQLAGEAKTR*
Ga0137390_101672373	3300012363	Vadose Zone Soil	EAKPGDLLLIMSNGSFDGLCEKVLKRLGAAVELAGEAKTR*
Ga0137390_101885022	3300012363	Vadose Zone Soil	LGAEAKPGDLLLIMSNGSFDGLCEKLLKKLGSAVQLAGEAKTR*
Ga0137396_104960631	3300012918	Vadose Zone Soil	AKPGDILLIMSNGSFDGLCEKLLKKLGAAVQLAGEAKTR*
Ga0137419_116935651	3300012925	Vadose Zone Soil	AKPGDLLLIMSNGSFDGLCEKLLKKLGTVVQLAGEAKSR*
Ga0137404_106824041	3300012929	Vadose Zone Soil	SGDLLLIMSNGSFDGLCEKLVKKLESKAAARSEANVR*
Ga0137410_106428721	3300012944	Vadose Zone Soil	EARPGDLILIMSNGSFDGLCEKLLKKLGAAMPVGSEAKTR*
Ga0137410_107908631	3300012944	Vadose Zone Soil	LAAEAKPGDLFLIMSNGSFDGLCEKLLKKLGSSVPVGSEAKTR*
Ga0126375_113761522	3300012948	Tropical Forest Soil	DLLLIMSNGSFDGLCEKLLKRLGATGVVPSEARAR*
Ga0126369_100067051	3300012971	Tropical Forest Soil	ESGDLLLIMSNGSFDGLCEKLLKKLSSAGGPIPSEAKAR*
Ga0164305_109267131	3300012989	Soil	LLLIMSNGSFDGLCEKLLKRLGAPQPATAEANSR*
Ga0120132_11350841	3300013832	Permafrost	ESEPGDLLLIMSNGSFDGLCEKLIAKLGAEGRVPSEAASR*
Ga0181526_103684672	3300014200	Bog	FLAAEARPNDLLLVMSNGSFDGLCEKLLERLQSRPSSSEAHTR*
Ga0137418_100670604	3300015241	Vadose Zone Soil	RSGDLFLIMSNGSFDGLCEKLLKKLGAAVPVGSEAKTR*
Ga0137403_113326621	3300015264	Vadose Zone Soil	EAKPGDLLLIMSNGSFDGLCEKIVKKLGAAGQLAGEAKTR*
Ga0182034_111375991	3300016371	Soil	AESRPGDLLLIMSNGSFDGLCEKLLSRLPKRLPSEAHTR
Ga0182037_117183262	3300016404	Soil	IADFLLAESRPGDLLLIMSNGSFDGLCEKLLSRLAKRLPSEARTR
Ga0182039_106977462	3300016422	Soil	IAAFLLSESQPGDLLLVMSNGSFDGLCEKLLSRLAKRLPSEARTR
Ga0187804_105463421	3300018006	Freshwater Sediment	AAEAKSGDIFLIMSNGSFDGLCEKLLKKLSAGQIPFEANAR
Ga0193729_10305141	3300019887	Soil	IATVLAAEAEPGDLLLVMSNGSFDGLCEKIIKKLGDEVRVPSEATNR
Ga0179594_102027642	3300020170	Vadose Zone Soil	LVTEARAGDLLLIMSNGSFDGLCEKLLKKLETAAQLAGETRTQ
Ga0210407_109928632	3300020579	Soil	LVVEAKAGDLLLIMSNGSFDGLCEKLLKKLSARNATSGANTL
Ga0210407_114882432	3300020579	Soil	DLLLIMSNGSFDGLCDKLLKKLGLAEQVPSEAKTR
Ga0210403_100371001	3300020580	Soil	AKPGDLLLIMSNGSFDGLCEKLLQKLAARHSTSGVNAR
Ga0210399_101139953	3300020581	Soil	LVAEAKAGDLLLIMSNGSFDGLCEKLLKKLSARNATSGANTR
Ga0210399_103317221	3300020581	Soil	EVEPGDVLLLMSNGSFDGLCEKLLAKLGQPLQVSSEANTR
Ga0210401_103357762	3300020583	Soil	IADLLAAEANPGDLLLIMSNGSFDGLCEKLLKKLSARHTTSGANAR
Ga0210400_102025091	3300021170	Soil	SRTGDLLLIMSNGSFDGLCEKLVKKLESAAGTRCEANVR
Ga0210405_101525691	3300021171	Soil	EAKPGDLLLIMSNGSFDGLCEKLLKKLGASVQLAGEAKTR
Ga0210408_104255672	3300021178	Soil	MSDHLAKQSQPGDLLLIMSNGSFDGLCEKLVKKLAQTVPSGAHAE
Ga0210396_1000471012	3300021180	Soil	ADLLVVEAKAGDLLLIMSNGSFDGLCEKLLKKLSARNATSGANTR
Ga0210393_102711131	3300021401	Soil	EAEPGDVLLVMSNGSFDGLCEKLLAKLGQPVQVSSEANSR
Ga0210397_104668362	3300021403	Soil	EAQAGDLLLVMSNGSFDGLCEKLLKKLGSEVVTPTEATAR
Ga0210384_100430464	3300021432	Soil	EARPGDLLLIMSNGSFDGLCEKLLKKLSARNPMSGVNAL
Ga0210402_108089381	3300021478	Soil	ISAAAESGDVLLAMSNGSFDGLCEKLLAKLGQPVQVSSEANTR
Ga0210410_104648502	3300021479	Soil	KAGDLLLVMSNGSFDALCEKLLKKLGEAVRLPSEASVR
Ga0210409_105364892	3300021559	Soil	AENLVAESKPGDLLLIMSNGSFDGLCDKLLKKLNAAIQLPSEAKTR
Ga0210409_112899181	3300021559	Soil	ADVLAAEAHPGDLLLIMSNGSFDGLCEKLLKKLSARHTTSGVNAR
Ga0242662_101654501	3300022533	Soil	PGDLLLIMSNGSFDGLCEKLLQKFAARHSTSGANTR
Ga0224564_11030581	3300024271	Soil	EQVSMEAEPGDVLLVMSNGSFDGLCEKLLAKLGQPVQVSSEANSR
Ga0137417_10296391	3300024330	Vadose Zone Soil	KPGDILLIMLSNGSFDGLCEKLLKKLGAAVQLAGEAKTR
Ga0208192_10222322	3300025477	Peatland	DVLAAEARPGDLLLVMSNGNFDGLCEKLLKKLAARQIPTGAQTN
Ga0209761_12879642	3300026313	Grasslands Soil	RAGDLFLIMSNGSFDGLCEKLLKKLGAAVPVASEAKTR
Ga0209154_10704171	3300026317	Soil	LGAESKPGDLLLIMSNGSFDGLCEKVLKKLGVVAQPAGEAKTR
Ga0209470_12536911	3300026324	Soil	YLGAEAKPGDLLLIMSNGSFDGLCEKVLTKLGAASQLAGEARTR
Ga0257172_10136392	3300026482	Soil	KPGDILLIMSNGSFDGLCEKLLKKLGTAVQLAGEAKTR
Ga0257165_10973152	3300026507	Soil	GEIKAGDLLLVMSNGSFDGLCEKLLKRLAQPAALPSEAQVR
Ga0209056_103067892	3300026538	Soil	ESKPGDLLLIMSNGSFDGLCEKVLKKLGASQLAGEAKTR
Ga0209156_100927151	3300026547	Soil	PGDLLLIMSNGSFDGLCEKLLKKLSSAGAVPSEAKAQ
Ga0209156_104849231	3300026547	Soil	SKPGDLLLIMSYCSFDGLCEKVLKKLGASQLAGEAKTR
Ga0179587_104328801	3300026557	Vadose Zone Soil	EAKAGDLLLIMSNGSFDGLVEKLLKKLDSAAQLAGEANSR
Ga0207858_10236062	3300026909	Tropical Forest Soil	SADAIADLLLAESMPGDLLLIMSNGSFDGLCEKLLSCLAKRLPSAAHTR
Ga0207743_10106071	3300026945	Tropical Forest Soil	AIADLLLAESMPGDLLLIMSNGSFDGLCEKLLSCLAKRLPSAAHTR
Ga0209588_10299222	3300027671	Vadose Zone Soil	VKPGDLLLIMSNGSFDGLCDKLLKKLGATQLAGEAKTK
Ga0209011_10216431	3300027678	Forest Soil	SEAKPGDLLLIMSNGSFDGLCEKLLKKLGTAVQLAGEAKTR
Ga0208991_12514602	3300027681	Forest Soil	EAEPGDLLLVMSNGNFDGLCEKLIKKLGEEVRVPSEANSR
Ga0209701_100280884	3300027862	Vadose Zone Soil	REAKPGDLLLIMSNGSFDGLCEKVVKKLGATAQLAGEAKTR
Ga0209701_100551121	3300027862	Vadose Zone Soil	HLGAEAKPGDILLIMSNGSFDGLCEKLLKKLGSAVQLAGEAKTR
Ga0209701_106136851	3300027862	Vadose Zone Soil	RPGDLLLIMSNGSFDGLCEKIVKKLGVAGQLAGEAKSR
Ga0209283_101456621	3300027875	Vadose Zone Soil	LEAEVKPGDLLLIMSNGSFDGLCEKLLKKLGTAAQLAGEAKTR
Ga0209275_107444741	3300027884	Soil	AEAEAGDVLLVMSNGSFDGLCEKLLTKLGQPVQVSSEANIR
Ga0209624_108292831	3300027895	Forest Soil	AAEAKDGDLLLVMSNGSFDGLCDKLLKKIGSEVPSEATSR
Ga0209488_110439832	3300027903	Vadose Zone Soil	DLLLIMSNGSFDGLCEKVLKKLGMAPQLASEAKTR
Ga0137415_109929752	3300028536	Vadose Zone Soil	DLLLIMSNGSFDGLCEKLLKKLSTVAQPAGEAKTR
Ga0265338_108120622	3300028800	Rhizosphere	HLANEARPGDLVLIMSNGSFDNLCEKLLKKLSARQIPSEANAR
Ga0222749_105049291	3300029636	Soil	GMLAAEAEPGDLLLVMSNGSFDGLCEKLIKKLGEEVRVPSEATSR
Ga0265753_11386152	3300030862	Soil	DVLLVMSNGSFDGLCEKLLAKLAQPVHVSSEANLR
Ga0310686_1081923811	3300031708	Soil	EPGDVLLVMSNGSFDGLCEKLLIKLAQPVQVSSEANLR
Ga0307474_112855511	3300031718	Hardwood Forest Soil	LAGEAKAGDLLLVMSNGSFDGLCDKLLKKIGSEVPSEATSR
Ga0306918_100050081	3300031744	Soil	AKAGDLLLIMSNGSFDGLCEKLLGKLSSPGQIPDEAKAR
Ga0307475_102438442	3300031754	Hardwood Forest Soil	NEAKPGDLVLIMSNGSFDGLCEKLVKKLDRSVAVPSEASTR
Ga0318566_106269861	3300031779	Soil	PGDLLLIMSNGSFDGLCEKLLGRLSKRLPSEAHTL
Ga0307478_102651722	3300031823	Hardwood Forest Soil	TEAKPGDLLLIMSNGSFDGLCDKLLKKLALVEQVTSEAKTR
Ga0306921_101798593	3300031912	Soil	NSHSGDLLLVMSNGSFDGLCEKLLKKLALTHSTTGANAR
Ga0306921_113769192	3300031912	Soil	HVLPGADNIADLLAAEAKSGDIFLIMSNGSFVGLCEKLLKKLSARQIPSEANAR
Ga0307479_105865501	3300031962	Hardwood Forest Soil	KYLAAETRPGDLVLVMSNGSFDGLCEKLLAKLGQPVQVSSEANTS
Ga0307479_117887781	3300031962	Hardwood Forest Soil	KPGDLLLIMSNGSFDGLCDKLVKKLDRGVAVSSEASTR
Ga0318533_106449762	3300032059	Soil	DLLLIMSNGSFDGLCEKLLKKLSASGQTPSEAKAR
Ga0307471_1011396491	3300032180	Hardwood Forest Soil	KPGDLLLIMSNGSFDGLCEKVLKRLGATSQLADEAKTR
Ga0307471_1013163722	3300032180	Hardwood Forest Soil	PGDLLLIMSNGSFDGLCEKIVKKLGAAGQLTGEAKTR
Ga0307471_1015008401	3300032180	Hardwood Forest Soil	DYVAGEAKAGDLLLVMSNGSFDGLCDKLLKRIGSEVPSGASSR
Ga0307471_1016290421	3300032180	Hardwood Forest Soil	RGDLLLIMSNGSFDGLCEKLMKKLERGVPTEAPAR
Ga0335079_101076974	3300032783	Soil	DLLAGEARSGDIFLIMSNGSFDGLCDKLLKKLSARQIPSEANAH
Ga0316212_10408802	3300033547	Roots	EAEPGDVLLVMSNGSFDGLCEKLLIKLAQPVQVSSEANLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences