Basic Information | |
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Family ID | F073095 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 120 |
Average Sequence Length | 48 residues |
Representative Sequence | KPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 120 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.87 % |
% of genes near scaffold ends (potentially truncated) | 94.17 % |
% of genes from short scaffolds (< 2000 bps) | 82.50 % |
Associated GOLD sequencing projects | 77 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (37.500 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (25.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (51.667 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (95.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Marine Marine Seawater Seawater Marine Estuarine Marine Marine Estuarine Estuarine Water Freshwater And Marine Seawater |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
LP_A_09_P04_10DRAFT_10294781 | 3300000265 | Marine | KPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAD* |
LP_A_09_P04_10DRAFT_10507881 | 3300000265 | Marine | QVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREVDWEVA* |
LP_A_09_P04_10DRAFT_10616202 | 3300000265 | Marine | GASEFFNHLSLTKHQARMLATELLLFAEGREIDWQVED* |
OpTDRAFT_100381743 | 3300000928 | Freshwater And Marine | FFNHLSLTKHQARMLATELLLFAEGREIDWEVAE* |
NpDRAFT_1000139521 | 3300000929 | Freshwater And Marine | IQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREID |
BpDRAFT_1000859817 | 3300000930 | Freshwater And Marine | RKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA* |
JGI26079J46598_10105601 | 3300003216 | Marine | WGGKDRMTCLQVTQRKPKGEGKGASDFFNHLSLTKHQARMLATELLLFAEGREVDWEVAE |
JGI26080J50196_10096008 | 3300003345 | Marine | KGASDFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE* |
JGI26080J50196_10123071 | 3300003345 | Marine | GKDRMTCLQVTQRKPKGEGKGASDFFNHLSLTKHQARMLATELLLFAEGREVDWEVAE* |
JGI26081J50195_10924611 | 3300003346 | Marine | KPKGEAEGASKFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE* |
JGI26084J50262_10268936 | 3300003427 | Marine | KGEAEGASKFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE* |
JGI26082J51739_100497745 | 3300003617 | Marine | GKGASDFFNHLSLTKHQARMLATELLLFAEGREVDWEVAE* |
JGI26273J51734_100319051 | 3300003620 | Marine | QVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA* |
JGI26273J51734_100496211 | 3300003620 | Marine | TQRKPKGEGPGASKFFNHLSLTKHQARQLATELLLFAEGREIDWEVAE* |
JGI26085J52751_10546161 | 3300003908 | Marine | CIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA* |
Ga0102880_11632271 | 3300007550 | Estuarine | DRMTCIQITQRKARGFQQPTTSDGFHNHIELTKHQARMLATELMLFAEGREIDWEVA* |
Ga0102820_10164101 | 3300007554 | Estuarine | PGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA* |
Ga0102820_10308161 | 3300007554 | Estuarine | PGASEFFNYLSLTKHQARALAVELMLFAEGREIDWEVE* |
Ga0102820_11338813 | 3300007554 | Estuarine | ADRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWEVAD* |
Ga0102820_11534711 | 3300007554 | Estuarine | MTCIQVTQRKPKGEGPGASKFFNHLSLTKHQARQLATELLLFAEGREIDW |
Ga0102821_11428233 | 3300007557 | Estuarine | PKGEGPGASEFFNHLSLTKHQARMLATELMLFAEGREVDWEVA* |
Ga0102821_11942912 | 3300007557 | Estuarine | FFNHLSLTKHQARQLATELLLFAEGREIDWEVAE* |
Ga0102822_11223483 | 3300007558 | Estuarine | VTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA* |
Ga0102910_11185731 | 3300007667 | Estuarine | IQITQRKARGFQQPTTSDGFHNHIELTKHQARMLATELLLFAEGREVDWEVA* |
Ga0102824_11508163 | 3300007681 | Estuarine | DRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELMLFAEGREVDWEVA* |
Ga0102823_11280223 | 3300007692 | Estuarine | QVTQRKPKGEAEGASKFFNHLSLTKHQARMLATELMLFAEGREVDWEVAE* |
Ga0102811_10934301 | 3300009024 | Estuarine | GASDFFNHLSLTKHQARALAVELMLFAEGREIDWEVE* |
Ga0102811_11946643 | 3300009024 | Estuarine | WGGKDRMTCIQVTQRKPKGEGESGASRFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE* |
Ga0102911_12335311 | 3300009049 | Estuarine | KGEAEGASKFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE* |
Ga0102892_10920181 | 3300009057 | Estuarine | KGEGPGASEFFNHLSLTKHQARQLATELMLFAEGREVDWEVA* |
Ga0102814_100207317 | 3300009079 | Estuarine | VTQRKPKGEGKGASDFFNHLSLTKHQARMLATELMLFAEGREVDWEVAE* |
Ga0102814_100996931 | 3300009079 | Estuarine | GEGKGASDFFNHLSLTKHQARMLATELLLFAEGREIDWEVAD* |
Ga0102812_101008141 | 3300009086 | Estuarine | GEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWEVAE* |
Ga0102812_103605871 | 3300009086 | Estuarine | RKPKGEGKGASDFFNHLSLTKHQARQLATELMLFAEGREIDWEVE* |
Ga0102812_104279944 | 3300009086 | Estuarine | FFNHLSLTKHQARQLATELLLFAEGREIDWEVVD* |
Ga0102885_10122087 | 3300009142 | Estuarine | RFWGGADRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA* |
Ga0102885_11163531 | 3300009142 | Estuarine | KGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA* |
Ga0115008_106872321 | 3300009436 | Marine | QRKPKGEGKGASDFFNHLSLTKHQARMLATELMLFAEEREVEEF* |
Ga0181391_10431341 | 3300017713 | Seawater | VTQRKPKGEGPGASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
Ga0181390_10258174 | 3300017719 | Seawater | PGASEFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE |
Ga0181390_11491373 | 3300017719 | Seawater | WGGKDRMTCIQVTQRKPKGFENWPNAGDGFFNSLQLTKHQARMLATELLLFAEGREIDWDVE |
Ga0181390_11877093 | 3300017719 | Seawater | EDRMTCIQVTQRKPKGEAEGASKFFNHLSLTKHQARMLAVELMLFAEGVEVEEV |
Ga0181383_11615663 | 3300017720 | Seawater | EGPGASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
Ga0181398_10136927 | 3300017725 | Seawater | GASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0181401_10149501 | 3300017727 | Seawater | GPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0181401_10884931 | 3300017727 | Seawater | RKPKGEAEGASKFFNHLSLTKHQARMLATELMLFAEGREIDWQIED |
Ga0181401_11383683 | 3300017727 | Seawater | PKGEAEGASKFFNHLSLTKHQARMLAVELMLFAEGVEVEEV |
Ga0181401_11759693 | 3300017727 | Seawater | SEFFNHLSLTKHQARMLATELLLFAEGREIDWDVE |
Ga0181419_10376031 | 3300017728 | Seawater | RKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0187222_10545191 | 3300017734 | Seawater | TQRKPKGEKAGIASDFFNHISLDKHQARALAVELMLFAEGREVEECEEFLDN |
Ga0187222_10961142 | 3300017734 | Seawater | DRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0181431_10450621 | 3300017735 | Seawater | CIQITQGKAKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0181392_10531834 | 3300017749 | Seawater | EFFNHLSLTKHQARMLATELLLFAEGREIDWEVAD |
Ga0181392_11732991 | 3300017749 | Seawater | IQVTQRKPKGEAEGASKFFNHLSLTKHQARMLAVELMLFAEGVEVEEV |
Ga0181400_11154034 | 3300017752 | Seawater | GKDRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA |
Ga0181400_11815003 | 3300017752 | Seawater | EGASKFFNHLSLTKHQARMLAVELMLFAEGVEVEEV |
Ga0181400_11880563 | 3300017752 | Seawater | IQVTQRKPKGPSKNVSDQFFNSLQLTKHQARMLATELMLFAEGREIDWQIED |
Ga0181385_10132601 | 3300017764 | Seawater | KGEGKGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0181406_12207751 | 3300017767 | Seawater | GASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
Ga0187217_11226771 | 3300017770 | Seawater | KPKGPTKDVSDQFFNSLQLTKHQARMLATELMLFAEGREIDWQVED |
Ga0181394_10630486 | 3300017776 | Seawater | RFWGGKDRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDV |
Ga0181379_10188101 | 3300017783 | Seawater | FWGGKDRMTCIQVTQRKPKGEGKGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVA |
Ga0181379_11367901 | 3300017783 | Seawater | TQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA |
Ga0181379_12931551 | 3300017783 | Seawater | DRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVE |
Ga0181424_100084619 | 3300017786 | Seawater | GKNRMTCIQVTQRRNKDEGKRGPADEFFNSLQLTKSQARALATELLLFAEGREVTELEEQ |
Ga0181424_101046051 | 3300017786 | Seawater | QRKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0180037_10392085 | 3300019214 | Estuarine | WGGKDRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAD |
Ga0180037_11953531 | 3300019214 | Estuarine | DRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWDVA |
Ga0211677_101658344 | 3300020385 | Marine | RMQCVQITQRKHKNERNGPADEFFNSMQLTKHQARQLAVELMLFAEGVEVEEI |
Ga0222717_103230125 | 3300021957 | Estuarine Water | RMTCIQVTQRKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0222716_103391771 | 3300021959 | Estuarine Water | KPKGEGKGASDFFNHLSLTKHQARMLATELLLFAEGREIDWQVAE |
Ga0222715_101019051 | 3300021960 | Estuarine Water | KGEGKGASEFFNHLSLTRHQARQLATELMLFAEEREVEEI |
Ga0222715_103633494 | 3300021960 | Estuarine Water | RMTCIQVTQRKPKGEGPGASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
(restricted) Ga0233432_104805572 | 3300023109 | Seawater | FWGGADRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA |
Ga0228669_10446971 | 3300024185 | Seawater | NRMVCIQVTQRKPKGEGPGASQFFNHLSLTKHQARMLATELMLFAEGREVEECEEFLDN |
Ga0228669_10999511 | 3300024185 | Seawater | GGKNRMTCIQITQRKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228636_10188531 | 3300024191 | Seawater | CIQVTQRKPKGEGPGASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
Ga0228633_10394511 | 3300024228 | Seawater | AEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228653_10373721 | 3300024237 | Seawater | QVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228675_10106956 | 3300024247 | Seawater | PKGEGPGASEFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE |
Ga0228676_10091268 | 3300024248 | Seawater | EGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
(restricted) Ga0233438_101039504 | 3300024255 | Seawater | QVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREVDWEVA |
(restricted) Ga0233438_101404305 | 3300024255 | Seawater | TCLQVTQRKPKGEGKGASDFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE |
(restricted) Ga0233439_102228294 | 3300024261 | Seawater | QQPTTSDGFHNHIELTKHQARMLATELLLFAEGREIDWEVA |
(restricted) Ga0233444_101605684 | 3300024264 | Seawater | PKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREVDWEVA |
Ga0228623_10636083 | 3300024267 | Seawater | GGKDRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228651_11515861 | 3300024293 | Seawater | ASEFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE |
Ga0228664_10739344 | 3300024294 | Seawater | KPKGEGPGASEFFNHLSLTKHQARMLAVELMLFAEGREIDWEVAE |
Ga0228664_11135561 | 3300024294 | Seawater | SKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228629_10612535 | 3300024296 | Seawater | KFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228624_10833592 | 3300024313 | Seawater | IQVTQRKPKGEGPGASQFFNHLSLTKHQARMLATELMLFAEGREVEECEEFLDN |
Ga0228657_10586331 | 3300024314 | Seawater | KPKGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0233398_10604684 | 3300024320 | Seawater | KGEGPGASEFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0233398_10761034 | 3300024320 | Seawater | QVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE |
Ga0244775_104713985 | 3300024346 | Estuarine | SRFFNHLSLTKHQARMLATELMLFAEGREVDWEVAE |
Ga0244775_109643313 | 3300024346 | Estuarine | EFFNHLSLTKHQARMLATELLLFAEGREIDWQVED |
Ga0209557_10311171 | 3300025483 | Marine | PKGEGKGASDFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE |
Ga0209659_12065712 | 3300025658 | Marine | RFWGGADRMTCIQVTQRKPKGEGPGASKFFNHLSLTKHQARQLATELLLFAEGREIDWEVAE |
Ga0209251_11714903 | 3300025668 | Marine | PKGEADAASKFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE |
Ga0209771_12169723 | 3300025701 | Marine | LQVTQRKPKGEADGASKFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE |
Ga0209137_11204705 | 3300025767 | Marine | GEGKGASDFFNHLSLTKHQARMLATELMLFAEGREVDWEVAE |
Ga0209137_11936103 | 3300025767 | Marine | TCIQVTQRKPKGEAEGASKFFNHLSLTKHQARMLATELMLFAEGREIDWEVAE |
Ga0209555_100178271 | 3300025879 | Marine | KDRMTCVQVTQRRPKEEGRRGPVDEHFNHLSLTRHQARMLATELLLFAEGREVEEV |
Ga0209555_101417205 | 3300025879 | Marine | KPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA |
Ga0209555_102133394 | 3300025879 | Marine | SKFFNHLSLTKHQARQLAVELMLFAEGREVDWEVAE |
Ga0208921_10531723 | 3300027188 | Estuarine | KPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWEVAD |
Ga0208922_10651441 | 3300027197 | Estuarine | CIQVTQRKPKGEGPGASEFFNHLSLTKHQARMLATELMLFAEGREVDWEVA |
Ga0208922_10734561 | 3300027197 | Estuarine | GASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA |
Ga0208897_11439521 | 3300027571 | Estuarine | GKDRMTCIQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA |
Ga0208305_1002496210 | 3300027753 | Estuarine | IQVTQRKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWEVA |
Ga0208305_100401921 | 3300027753 | Estuarine | MTCIQVTQRKPKGEGKGASDFFNHLSLTKHQARMLATELMLFAEGREVDWEVAE |
Ga0208671_103246681 | 3300027757 | Estuarine | RKPKGEGPGASEFFNHLSLTKHQARQLATELLLFAEGREIDWDVA |
Ga0233401_10541601 | 3300028127 | Seawater | RFWGGKNRMTCIQITQRKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0257127_11517453 | 3300028189 | Marine | RMTCVQVTQRKPKGEGKGASDFFNHLSLTRHQARQLATELMLFAEEREVEECESWVAEEEEL |
Ga0257114_10500856 | 3300028196 | Marine | TQTRFWGGKDRMTCIQITQRKARGFSKPTTSDGFHNHIELTKHQARMLATELMLFAEGREIDWEVAEEEAV |
Ga0257126_12054762 | 3300028287 | Marine | RFWGGKDRMTCLQVTQRKPKGEGKGASDFFNHLSLTKHQARMLATELLLFAEGREVDWEVAE |
Ga0233394_10326013 | 3300028391 | Seawater | RKPKGEGPGASQFFNHLSLTKHQARMLATELMLFAEGREVEECEEFLDN |
Ga0228643_10995481 | 3300028396 | Seawater | MTCIQITQRKPKGEAEGASKFFNHLSLTKHQARMLATELLLFAEGREIDWEVAE |
Ga0228615_10910491 | 3300028418 | Seawater | PKGEGPGASQFFNHLSLTKHQARALAVELMLFAEGREIDWEVE |
Ga0308015_100145801 | 3300031694 | Marine | WGGENRLTCLQVSQVKPKSERSRDGSDFFNHLSLTKAQAGALAVELMLFAEGREVEEEEA |
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