Metagenome Family F072858

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072858
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	59 residues
Representative Sequence	MDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQARRPHG
Number of Associated Samples	93
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.90 %
% of genes near scaffold ends (potentially truncated)	33.06 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.876 % of family members)
Environment Ontology (ENVO)	Unclassified (30.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.413 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.53% β-sheet: 0.00% Coil/Unstructured: 57.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF11695	DUF3291	33.06
PF10604	Polyketide_cyc2	6.61
PF01569	PAP2	4.96
PF07969	Amidohydro_3	2.48
PF12852	Cupin_6	0.83
PF00486	Trans_reg_C	0.83
PF13460	NAD_binding_10	0.83
PF05532	CsbD	0.83
PF07366	SnoaL	0.83
PF00440	TetR_N	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.37 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	10.74 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12.40 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.48 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	10.74 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.65 %
Kordiimonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales	1.65 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.74 %
Kordiimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae	1.65 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.65 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.83 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.74 %
Kordiimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	1.65 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.65 %
Rhodospirillales bacterium TMPK1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium TMPK1	0.83 %
Unclassified	root	N/A	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8719063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4716	Open in IMG/M
2088090015\|GPICI_8865573	All Organisms → cellular organisms → Bacteria → Proteobacteria	5895	Open in IMG/M
2088090015\|GPICI_9234752	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
2162886012\|MBSR1b_contig_3901732	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
2228664021\|ICCgaii200_c1097531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	768	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105020239	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300000890\|JGI11643J12802_10449119	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300000891\|JGI10214J12806_12343764	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300001431\|F14TB_106504944	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300004114\|Ga0062593_100139433	All Organisms → cellular organisms → Bacteria → Proteobacteria	1813	Open in IMG/M
3300004114\|Ga0062593_100146637	All Organisms → cellular organisms → Bacteria → Proteobacteria	1781	Open in IMG/M
3300004157\|Ga0062590_100069207	All Organisms → cellular organisms → Bacteria → Proteobacteria	2075	Open in IMG/M
3300004463\|Ga0063356_100040154	All Organisms → cellular organisms → Bacteria → Proteobacteria	4614	Open in IMG/M
3300004463\|Ga0063356_101617821	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300004463\|Ga0063356_101723177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	938	Open in IMG/M
3300004463\|Ga0063356_103193988	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300004463\|Ga0063356_105473366	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300004480\|Ga0062592_100016602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3204	Open in IMG/M
3300004643\|Ga0062591_100771724	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300005093\|Ga0062594_102725262	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005295\|Ga0065707_10154251	All Organisms → cellular organisms → Bacteria → Proteobacteria	1625	Open in IMG/M
3300005332\|Ga0066388_102854002	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005332\|Ga0066388_107944924	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300005336\|Ga0070680_100607319	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005336\|Ga0070680_101412040	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300005343\|Ga0070687_100028890	All Organisms → cellular organisms → Bacteria → Proteobacteria	2694	Open in IMG/M
3300005347\|Ga0070668_100636497	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300005356\|Ga0070674_101379234	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300005440\|Ga0070705_101354769	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005441\|Ga0070700_100078038	All Organisms → cellular organisms → Bacteria → Proteobacteria	2131	Open in IMG/M
3300005441\|Ga0070700_101003802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300005444\|Ga0070694_100622455	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005458\|Ga0070681_11282161	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300005530\|Ga0070679_101745568	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005548\|Ga0070665_100151058	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300005564\|Ga0070664_102335316	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300005842\|Ga0068858_102271198	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300006049\|Ga0075417_10056387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1710	Open in IMG/M
3300006844\|Ga0075428_100011795	All Organisms → cellular organisms → Bacteria → Proteobacteria	9728	Open in IMG/M
3300006844\|Ga0075428_100027827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	6255	Open in IMG/M
3300006844\|Ga0075428_100085192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3447	Open in IMG/M
3300006845\|Ga0075421_102484862	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300006846\|Ga0075430_100743514	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300006852\|Ga0075433_11271552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300006894\|Ga0079215_10398490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	811	Open in IMG/M
3300006914\|Ga0075436_100639365	Not Available	785	Open in IMG/M
3300007004\|Ga0079218_10446773	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300007004\|Ga0079218_11064104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	820	Open in IMG/M
3300007004\|Ga0079218_13178624	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300009011\|Ga0105251_10548471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300009092\|Ga0105250_10194182	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300009094\|Ga0111539_10042036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5492	Open in IMG/M
3300009094\|Ga0111539_10281753	All Organisms → cellular organisms → Bacteria → Proteobacteria	1934	Open in IMG/M
3300009100\|Ga0075418_10092123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3220	Open in IMG/M
3300009100\|Ga0075418_10138389	All Organisms → cellular organisms → Bacteria → Proteobacteria	2590	Open in IMG/M
3300010371\|Ga0134125_10787390	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300010399\|Ga0134127_11846533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300010401\|Ga0134121_10075266	All Organisms → cellular organisms → Bacteria → Proteobacteria	2798	Open in IMG/M
3300012015\|Ga0120187_1064246	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300012891\|Ga0157305_10066218	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300012895\|Ga0157309_10192605	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300012902\|Ga0157291_10287756	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300012906\|Ga0157295_10299445	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300012910\|Ga0157308_10103288	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300012941\|Ga0162652_100095985	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300012961\|Ga0164302_11356844	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300014326\|Ga0157380_11345753	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300015200\|Ga0173480_10437829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	768	Open in IMG/M
3300015371\|Ga0132258_10501265	All Organisms → cellular organisms → Bacteria	3036	Open in IMG/M
3300015371\|Ga0132258_12165269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300015373\|Ga0132257_101791248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	789	Open in IMG/M
3300015374\|Ga0132255_101258965	All Organisms → cellular organisms → Bacteria → Proteobacteria	1115	Open in IMG/M
3300017792\|Ga0163161_10234673	All Organisms → cellular organisms → Bacteria → Proteobacteria	1424	Open in IMG/M
3300018422\|Ga0190265_12140510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	663	Open in IMG/M
3300018422\|Ga0190265_12372127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300018422\|Ga0190265_12933834	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300018469\|Ga0190270_13127457	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300019356\|Ga0173481_10251485	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300019360\|Ga0187894_10020924	All Organisms → cellular organisms → Bacteria → Proteobacteria	4626	Open in IMG/M
3300019361\|Ga0173482_10076097	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300019377\|Ga0190264_10124967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1268	Open in IMG/M
3300019377\|Ga0190264_11570331	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300023057\|Ga0247797_1011696	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300023072\|Ga0247799_1066382	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300023077\|Ga0247802_1085691	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300025912\|Ga0207707_10400109	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300025918\|Ga0207662_10020435	All Organisms → cellular organisms → Bacteria	3778	Open in IMG/M
3300025925\|Ga0207650_10618749	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300025942\|Ga0207689_10706452	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300025972\|Ga0207668_10202802	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300026075\|Ga0207708_10551503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	972	Open in IMG/M
3300026118\|Ga0207675_100188598	All Organisms → cellular organisms → Bacteria → Proteobacteria	1977	Open in IMG/M
3300027873\|Ga0209814_10051634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1716	Open in IMG/M
3300027880\|Ga0209481_10766424	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300027886\|Ga0209486_11030037	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300027907\|Ga0207428_10055813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3139	Open in IMG/M
3300027907\|Ga0207428_10548088	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300027907\|Ga0207428_11204659	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300027909\|Ga0209382_10003946	All Organisms → cellular organisms → Bacteria → Proteobacteria	20233	Open in IMG/M
3300028381\|Ga0268264_11609042	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031538\|Ga0310888_10652928	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300031548\|Ga0307408_100635691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	952	Open in IMG/M
3300031562\|Ga0310886_10061368	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300031562\|Ga0310886_10142083	All Organisms → cellular organisms → Bacteria → Proteobacteria	1253	Open in IMG/M
3300031847\|Ga0310907_10076300	All Organisms → cellular organisms → Bacteria → Proteobacteria	1383	Open in IMG/M
3300031847\|Ga0310907_10246429	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300031847\|Ga0310907_10664428	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300031858\|Ga0310892_10263424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium TMPK1	1070	Open in IMG/M
3300031892\|Ga0310893_10338314	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031901\|Ga0307406_10441228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1042	Open in IMG/M
3300031901\|Ga0307406_11635965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300031901\|Ga0307406_11827232	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300031908\|Ga0310900_10265737	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300031908\|Ga0310900_10625381	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031943\|Ga0310885_10116072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1238	Open in IMG/M
3300032000\|Ga0310903_10555114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300032002\|Ga0307416_100744090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Kordiimonadales → Kordiimonadaceae → Kordiimonas	1072	Open in IMG/M
3300032003\|Ga0310897_10251367	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300032005\|Ga0307411_11354450	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300032179\|Ga0310889_10129500	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300032421\|Ga0310812_10048846	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.33%
Host-Associated	Host-Associated	39.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.33%
Plants	Host-Associated → Plants	39.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.40%
Cave	Environmental → Terrestrial → Cave	0.83%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.31%
Loam	Environmental → Terrestrial → Soil → Loam	12.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.13%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.13%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.13%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03021520	2088090015	Soil	MDPLTQLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDDDSDLGNLRSFEHWLSHIAKAK
GPICI_00790490	2088090015	Soil	MDPLTQLYQRLRSQVPGPRISIEPPAIEEWLQFWNDDDTDLGNLRTFEHWLSQKWGYSSFRNAE
GPICI_02171290	2088090015	Soil	MDPLTQLYQRLRSQVPGPRISIEPPAIEEWLEFWNDDDTDLGNLRTFEHWLSQKWGHI
MBSR1b_0781.00005140	2162886012	Miscanthus Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG
ICCgaii200_10975312	2228664021	Soil	MDPLTQLYERLRTQDPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG
INPhiseqgaiiFebDRAFT_1050202392	3300000364	Soil	MDPLTQLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDEDSDLGNLRTFEHWLSQKWGHSSFPRDSTI*
JGI11643J12802_104491192	3300000890	Soil	MDPLTQLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDDDSDLGNLRSFEHWLSHIAKAK*
JGI10214J12806_123437642	3300000891	Soil	TAASIIWKASRNVFMDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
F14TB_1065049441	3300001431	Soil	MDPLTQLYERLRTQVPGSRIPAEPAVVEAWLXXXXXXXXDLGNLRTFEHWLSQTRRAHG*
Ga0062593_1001394332	3300004114	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0062593_1001466374	3300004114	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG*
Ga0062590_1000692075	3300004157	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSR
Ga0063356_1000401544	3300004463	Arabidopsis Thaliana Rhizosphere	MDPLTQLYQRLRSQVPGPRISIEPPAIEEWLQFWNDDDTDLGNLRTFEHWLSQKWGYSSFRNAE*
Ga0063356_1016178211	3300004463	Arabidopsis Thaliana Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0063356_1017231772	3300004463	Arabidopsis Thaliana Rhizosphere	MDPLTQLYERLQLQVPGTKAPTDPSLIEAWLDYWNDDDTDLGNLRTFEHWLSQVRRPHG*
Ga0063356_1031939881	3300004463	Arabidopsis Thaliana Rhizosphere	VRPDIILRMDPLTQLYQRLRAQVPGPRISIEPPAIEDWLEFWNDDDTDLGNLRTFEHWLSQKWGHSSFRSAD*
Ga0063356_1054733662	3300004463	Arabidopsis Thaliana Rhizosphere	MDPLTQLYERFRAQAPGARFLPLEPPAVEEWLEYWNDDDTDLGNLRTFEHWLTQVAKMRR
Ga0062592_1000166027	3300004480	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQSRRAHG*
Ga0062591_1007717242	3300004643	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQ
Ga0062594_1027252622	3300005093	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHW
Ga0065707_101542512	3300005295	Switchgrass Rhizosphere	MDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQARRPHG*
Ga0066388_1028540021	3300005332	Tropical Forest Soil	MDPLTQLYERLRTQVPNNKLPAEPAVVEAWLEYWNDDDTDLGNLRTFAHWL
Ga0066388_1079449242	3300005332	Tropical Forest Soil	MDPLTLLYQRLRAQVPGPRISIEPPAIEAWLEFWNDDDTDLGNLRTFEHWLSQAPQGK*
Ga0070680_1006073191	3300005336	Corn Rhizosphere	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQSR
Ga0070680_1014120402	3300005336	Corn Rhizosphere	MDPLTRLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDDDSDLGNLRSFEHWLSHVAKAK*
Ga0070687_1000288903	3300005343	Switchgrass Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0070668_1006364972	3300005347	Switchgrass Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRLPRS*
Ga0070674_1013792341	3300005356	Miscanthus Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRRPRS*
Ga0070705_1013547691	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRR
Ga0070700_1000780383	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRRPRS*
Ga0070700_1010038021	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MDPLTQLYQRLRAQVPGPRISIEPPAIEEWLAFWNDDDTDLGNLRTFEHWLSQKWGHSSFRSAD*
Ga0070694_1006224551	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SACRLTLMDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0070681_112821611	3300005458	Corn Rhizosphere	MDPLTQLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDDDSDLGNLRSFEHWLSHVAKAK*
Ga0070679_1017455682	3300005530	Corn Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFE
Ga0070665_1001510583	3300005548	Switchgrass Rhizosphere	ASIIWKASRNVFMDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0070664_1023353162	3300005564	Corn Rhizosphere	VRPDIILRMDPLTQLYQRLRAQVPGPRISIEPPAIEEWLQFWNDDDTDLGNLRTFEHWLSQKWGYSSFRNA
Ga0068858_1022711981	3300005842	Switchgrass Rhizosphere	MDPLTQLYQRLRAQVPGPRISIEPPAIEEWLAFWNDDDTDLGNLRTFEHWLSQKWGHSS
Ga0075417_100563874	3300006049	Populus Rhizosphere	MDPLTQLHERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG*
Ga0075428_10001179511	3300006844	Populus Rhizosphere	MDPLTQLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG*
Ga0075428_1000278277	3300006844	Populus Rhizosphere	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG*
Ga0075428_1000851928	3300006844	Populus Rhizosphere	MDPLTQLYERLRTQVPGSRIPPEPAVVEAWLEYWNDDDTDLGNLRTFEHWLAQIRRPHG*
Ga0075421_1024848621	3300006845	Populus Rhizosphere	MDPLTQLYQRLRSQVPGPKIPIEPPAIEEWLEFWNDDDTDLGNLRTFEHWLSQKWGHSSFRNAE*
Ga0075430_1007435142	3300006846	Populus Rhizosphere	MDPLTQLYERLRTQVPGSQIPPEPAVIEAWLEYWNDDDTDLGNLRTFEHWLAQIRRPHG*
Ga0075433_112715522	3300006852	Populus Rhizosphere	SRMDPLTQLYQRLRSQVPGPKIPIEPPAIEEWLEFWNDDDTDLGNLRTFEHWLSQKWGHSSFRNAE*
Ga0079215_103984902	3300006894	Agricultural Soil	MDPLMQMYERLRLQVPGAKISADASLVEAWLEYWNDDDTDLGNLRSFE
Ga0075436_1006393652	3300006914	Populus Rhizosphere	MDPLTQLYQRLRAQVPGPRIPIEPPAIEAWLEYWNDDDTDLGNLRTFEHWLSQKWGHSSFPRDRIT*
Ga0079218_104467732	3300007004	Agricultural Soil	MDPLTQMYERLQLQVPGTKAPTDPSLIEAWLDYWNDDDTDLGNLRTFEHWLSQVRRPHG*
Ga0079218_110641042	3300007004	Agricultural Soil	MDPLMQMYERLRLQVPGARMPADASLVEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG*
Ga0079218_131786242	3300007004	Agricultural Soil	MDPLMQMYERLRLQVPGSRMPADASLIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG*
Ga0105251_105484712	3300009011	Switchgrass Rhizosphere	RTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0105250_101941821	3300009092	Switchgrass Rhizosphere	MDPLTQLYERLRKQVPGSRIPPEPTVVEAWLEYWNDDDTDLGNLRTFEHWLSQKKWGHSSFRGAPKK*
Ga0111539_100420367	3300009094	Populus Rhizosphere	MYSMDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG*
Ga0111539_102817531	3300009094	Populus Rhizosphere	MHSMDPLTQLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG*
Ga0075418_100921236	3300009100	Populus Rhizosphere	MHSMDPLTQLHERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG*
Ga0075418_101383892	3300009100	Populus Rhizosphere	MYSMDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG*
Ga0134125_107873902	3300010371	Terrestrial Soil	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRLPRS*
Ga0134127_118465331	3300010399	Terrestrial Soil	IILRMDPLTQLYQRLRAQVPGPRISIEPPAIEDWLEFWNDDDTDLGNLRTFEHWLSQKWGHSSFRSAD*
Ga0134121_100752662	3300010401	Terrestrial Soil	MDQLTQLYERLRRQCSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0120187_10642461	3300012015	Terrestrial	MDPLTQLYERVRSQVPGARVLAEPAIIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG*
Ga0157305_100662182	3300012891	Soil	MYSMDPLTQLYERLRTQVPGSRLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG*
Ga0157309_101926052	3300012895	Soil	MYSMDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0157291_102877561	3300012902	Soil	GAAVGSACRLTLMDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG*
Ga0157295_102994452	3300012906	Soil	MYSMDPLTQLYERLRTQVPGSGLAPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG*
Ga0157308_101032882	3300012910	Soil	MYSMDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG*
Ga0162652_1000959851	3300012941	Soil	MDPLTQLYQRLRAQVPGPRIPIEPPAIEEWLEYWNDDDTDLGNLRTFEHWLSQLAKSATR
Ga0164302_113568442	3300012961	Soil	MDPLTQLYERLRTQVPGSRIPPEPTVVEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0157380_113457532	3300014326	Switchgrass Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFE
Ga0173480_104378292	3300015200	Soil	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0132258_105012652	3300015371	Arabidopsis Rhizosphere	MDPLTQLYERLQTLVPTSKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQTRRPHG*
Ga0132258_121652691	3300015371	Arabidopsis Rhizosphere	DPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRRPRS*
Ga0132257_1017912482	3300015373	Arabidopsis Rhizosphere	MDPLTQLYERLRTQVPSNELRAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG*
Ga0132255_1012589653	3300015374	Arabidopsis Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRRPR
Ga0163161_102346731	3300017792	Switchgrass Rhizosphere	NGAAVGSACRLTLMDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG
Ga0190265_121405101	3300018422	Soil	MDPLMQMYERLRLQVPGARMPADVSLIEAWLEYWNDDDTDLGNLRTFEHWL
Ga0190265_123721271	3300018422	Soil	MDPLMQMYERLRLQVPGARMPADASLIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0190265_129338341	3300018422	Soil	LDHPLSRYSMDPLMQMYERLRLQVPSARMPADAALIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0190270_131274572	3300018469	Soil	YERLREQVPSRKIPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRSHG
Ga0173481_102514851	3300019356	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG
Ga0187894_100209244	3300019360	Microbial Mat On Rocks	MDPLTQLYERLRTQAPGARIPADPSLIEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0173482_100760972	3300019361	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG
Ga0190264_101249671	3300019377	Soil	MDPLMQMYERLRLQVPGARMPADASLIEAWLEYWNDDDTDLGNLRTFEHWLAQVRRPHG
Ga0190264_115703312	3300019377	Soil	MDPLTQLYQRLREQVPGGRIPAEPAIIEAWLEYWNDDDTDLGNLRTFEHWLSQARRSHG
Ga0247797_10116962	3300023057	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG
Ga0247799_10663821	3300023072	Soil	MDPLTQLYERLRTQVPGSRLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQSRRAHG
Ga0247802_10856911	3300023077	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQS
Ga0207707_104001092	3300025912	Corn Rhizosphere	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQSRRPHG
Ga0207662_100204354	3300025918	Switchgrass Rhizosphere	TQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG
Ga0207650_106187492	3300025925	Switchgrass Rhizosphere	RLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG
Ga0207689_107064521	3300025942	Miscanthus Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQ
Ga0207668_102028022	3300025972	Switchgrass Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRLPRS
Ga0207708_105515032	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VRPDIILRMDPLTQLYQRLRAQVPGPRISIEPPAIEEWLAFWNDDDTDLGNLRTFEHWLSQKWGHSSFRSAD
Ga0207675_1001885983	3300026118	Switchgrass Rhizosphere	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLPQSRRPHG
Ga0209814_100516344	3300027873	Populus Rhizosphere	MDPLTQLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG
Ga0209481_107664242	3300027880	Populus Rhizosphere	MDPLTQLYERLRTQVPGSQIPPEPAVIEAWLEYWNDDDTDLGNLRTFEHWLAQIRRPHG
Ga0209486_110300372	3300027886	Agricultural Soil	MDPLTQMYERLQLQVPGTKAPTDPSLIEAWLDYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0207428_100558137	3300027907	Populus Rhizosphere	MDPLTQLYQRLRSQVPGPKIPIEPPAIEEWLEFWNDDDTDLGNLRTFEHWLSQKWGHSSFRNAE
Ga0207428_105480881	3300027907	Populus Rhizosphere	ERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG
Ga0207428_112046592	3300027907	Populus Rhizosphere	MDPLTQLYERLRTQVPNKKFSAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQIRRPRS
Ga0209382_1000394619	3300027909	Populus Rhizosphere	MDPLTQLYERLRTQVPGSRIPPEPAVVEAWLEYWNDDDTDLGNLRTFEHWLAQIRRPHG
Ga0268264_116090422	3300028381	Switchgrass Rhizosphere	ERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG
Ga0310888_106529281	3300031538	Soil	MDPLTKLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG
Ga0307408_1006356912	3300031548	Rhizosphere	MDPLMQMYERLRLQVPGAKISADASLVEAWLEYWNDDDTDLGNLRTFEHWLAQVRRPHG
Ga0310886_100613682	3300031562	Soil	MDPLTQLYERLRTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQARRPHG
Ga0310886_101420831	3300031562	Soil	GMYSMDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRAHG
Ga0310907_100763002	3300031847	Soil	MDPLTQLYERLRKQVPGSRIPPEPTVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG
Ga0310907_102464291	3300031847	Soil	MDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG
Ga0310907_106644282	3300031847	Soil	DPLTQLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG
Ga0310892_102634242	3300031858	Soil	MDPLTQLYQRLRAQVPGPRISIEPPAIEEWLAFWNDDDTDLGNLRTFEHWLSQKWGHSSFRSAD
Ga0310893_103383142	3300031892	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSHARRPHG
Ga0307406_104412282	3300031901	Rhizosphere	MDPLMQMYERLRLQVPGAKISADASLVEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0307406_116359651	3300031901	Rhizosphere	HSMDPLTQLYERLRTQDPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPH
Ga0307406_118272321	3300031901	Rhizosphere	MDPLTQLYARLRTQVSGARYQPEPAIVEAWLEYWNDDDTDLGNLRTFEHWLSQIFNRR
Ga0310900_102657373	3300031908	Soil	MDPLTQLYERLRTQVPGSGLPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTR
Ga0310900_106253813	3300031908	Soil	MDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQARRPHG
Ga0310885_101160722	3300031943	Soil	MDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG
Ga0310903_105551142	3300032000	Soil	TAASIISKVSRNVFMDPLTQLYERLRTQVPSNKLPTEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQARRPHG
Ga0307416_1007440901	3300032002	Rhizosphere	SMDPLMQMYERLRLQVPGAKISADASLVEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0310897_102513671	3300032003	Soil	MDPLTQLYERLRTQVPGSRIPPQPAVVEAWLEYWNDDDTDLGNLRTFEHWLSQTRRARG
Ga0307411_113544501	3300032005	Rhizosphere	LMQMYERLRLQVPGAKISADASLVEAWLEYWNDDDTDLGNLRTFEHWLSQVRRPHG
Ga0310889_101295001	3300032179	Soil	KYRGMHSMDPLTQLYERLRTQGPGGRIPPEPAVIEAWLEYWNDDDSDLGNLRTFEHWLSQVRRPHG
Ga0310812_100488462	3300032421	Soil	RTQVSSNKLPAEPAVIEAWLEYWNDDDTDLGNLRTFEHWLSQSRRQHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072858

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences