Metagenome / Metatranscriptome Family F072790

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072790
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	81 residues
Representative Sequence	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLGAQVPALNMIGTKPILRSITDKGYYIWRAGFLPA
Number of Associated Samples	85
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.03 %
% of genes near scaffold ends (potentially truncated)	23.14 %
% of genes from short scaffolds (< 2000 bps)	88.43 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.694 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (33.058 % of family members)
Environment Ontology (ENVO)	Unclassified (26.446 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.025 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.67% β-sheet: 26.61% Coil/Unstructured: 69.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00166	Cpn10	17.36
PF00118	Cpn60_TCP1	5.79
PF00196	GerE	2.48
PF04280	Tim44	2.48
PF09361	Phasin_2	1.65
PF11775	CobT_C	0.83
PF08281	Sigma70_r4_2	0.83
PF12221	HflK_N	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	17.36
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	5.79
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	2.48

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.69 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.69 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.69 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.91 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	88.43 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	80.99 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.96 %
Unclassified	root	N/A	3.31 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	71.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.96 %
Unclassified	root	N/A	3.31 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	68.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.96 %
Unclassified	root	N/A	3.31 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	68.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.96 %
Unclassified	root	N/A	3.31 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13870669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	855	Open in IMG/M
3300000858\|JGI10213J12805_10143301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1168	Open in IMG/M
3300000956\|JGI10216J12902_102546956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1248	Open in IMG/M
3300004479\|Ga0062595_101435878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	631	Open in IMG/M
3300005341\|Ga0070691_10046222	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300005343\|Ga0070687_101470689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	511	Open in IMG/M
3300005434\|Ga0070709_11051671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	649	Open in IMG/M
3300005437\|Ga0070710_10680118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	724	Open in IMG/M
3300005441\|Ga0070700_100248111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1276	Open in IMG/M
3300005444\|Ga0070694_100142420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1743	Open in IMG/M
3300005617\|Ga0068859_102537193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	564	Open in IMG/M
3300006163\|Ga0070715_10341695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	815	Open in IMG/M
3300006196\|Ga0075422_10146747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	940	Open in IMG/M
3300006196\|Ga0075422_10551314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	529	Open in IMG/M
3300006358\|Ga0068871_100556599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1039	Open in IMG/M
3300006755\|Ga0079222_10052595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1902	Open in IMG/M
3300006755\|Ga0079222_11305183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	662	Open in IMG/M
3300006755\|Ga0079222_11842205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	587	Open in IMG/M
3300006806\|Ga0079220_10327757	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300006844\|Ga0075428_100113086	All Organisms → cellular organisms → Bacteria → Proteobacteria	2957	Open in IMG/M
3300006844\|Ga0075428_100229251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2004	Open in IMG/M
3300006844\|Ga0075428_100231374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1994	Open in IMG/M
3300006844\|Ga0075428_100690509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1087	Open in IMG/M
3300006844\|Ga0075428_100728739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1055	Open in IMG/M
3300006845\|Ga0075421_101310431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	801	Open in IMG/M
3300006845\|Ga0075421_101345933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300006845\|Ga0075421_101527928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	729	Open in IMG/M
3300006847\|Ga0075431_100693541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300006847\|Ga0075431_100748730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	953	Open in IMG/M
3300006852\|Ga0075433_10322589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1366	Open in IMG/M
3300006854\|Ga0075425_100038092	All Organisms → cellular organisms → Bacteria	5358	Open in IMG/M
3300006865\|Ga0073934_10831602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	524	Open in IMG/M
3300006880\|Ga0075429_100065457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3164	Open in IMG/M
3300006894\|Ga0079215_10272640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	914	Open in IMG/M
3300006914\|Ga0075436_100837159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	686	Open in IMG/M
3300006954\|Ga0079219_10032603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2076	Open in IMG/M
3300007076\|Ga0075435_101932088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	518	Open in IMG/M
3300009081\|Ga0105098_10049187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1715	Open in IMG/M
3300009094\|Ga0111539_10740878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1144	Open in IMG/M
3300009094\|Ga0111539_11436638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	800	Open in IMG/M
3300009094\|Ga0111539_12071308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	660	Open in IMG/M
3300009094\|Ga0111539_12136623	Not Available	650	Open in IMG/M
3300009094\|Ga0111539_12414048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	610	Open in IMG/M
3300009100\|Ga0075418_10170890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2314	Open in IMG/M
3300009100\|Ga0075418_10363040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1546	Open in IMG/M
3300009100\|Ga0075418_10570637	Not Available	1217	Open in IMG/M
3300009146\|Ga0105091_10096797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1348	Open in IMG/M
3300009146\|Ga0105091_10284718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	803	Open in IMG/M
3300009147\|Ga0114129_11043503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1027	Open in IMG/M
3300009147\|Ga0114129_11694514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	771	Open in IMG/M
3300009156\|Ga0111538_10697490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1286	Open in IMG/M
3300009156\|Ga0111538_11694084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	796	Open in IMG/M
3300009156\|Ga0111538_11741247	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300009156\|Ga0111538_12000214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	729	Open in IMG/M
3300009162\|Ga0075423_10248057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1865	Open in IMG/M
3300009162\|Ga0075423_11296161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	779	Open in IMG/M
3300009168\|Ga0105104_10163540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1205	Open in IMG/M
3300009553\|Ga0105249_12772078	Not Available	562	Open in IMG/M
3300009609\|Ga0105347_1204347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	796	Open in IMG/M
3300009809\|Ga0105089_1060959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	604	Open in IMG/M
3300010400\|Ga0134122_10011713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	6536	Open in IMG/M
3300012212\|Ga0150985_118963583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	581	Open in IMG/M
3300012492\|Ga0157335_1031956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	556	Open in IMG/M
3300012951\|Ga0164300_10243244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	909	Open in IMG/M
3300012958\|Ga0164299_11008840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	614	Open in IMG/M
3300012989\|Ga0164305_11345563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	626	Open in IMG/M
3300014326\|Ga0157380_11179042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	809	Open in IMG/M
3300014969\|Ga0157376_10858240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	924	Open in IMG/M
3300014969\|Ga0157376_12130192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	599	Open in IMG/M
3300015195\|Ga0167658_1054913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	966	Open in IMG/M
3300015258\|Ga0180093_1003642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2734	Open in IMG/M
3300015371\|Ga0132258_10463965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3160	Open in IMG/M
3300015371\|Ga0132258_11539063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1679	Open in IMG/M
3300015371\|Ga0132258_13212710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1127	Open in IMG/M
3300015372\|Ga0132256_101886214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	705	Open in IMG/M
3300015373\|Ga0132257_101901173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	766	Open in IMG/M
3300015373\|Ga0132257_102985176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	616	Open in IMG/M
3300015374\|Ga0132255_102824962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	742	Open in IMG/M
3300015374\|Ga0132255_103638441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	655	Open in IMG/M
3300017792\|Ga0163161_11778662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	547	Open in IMG/M
3300018429\|Ga0190272_12759076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	541	Open in IMG/M
3300018481\|Ga0190271_10740268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1107	Open in IMG/M
3300019248\|Ga0180117_1378404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300020064\|Ga0180107_1118146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	505	Open in IMG/M
3300025905\|Ga0207685_10041198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1726	Open in IMG/M
3300025934\|Ga0207686_10036867	All Organisms → cellular organisms → Bacteria	2947	Open in IMG/M
3300025938\|Ga0207704_11024446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	699	Open in IMG/M
3300027775\|Ga0209177_10334355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	588	Open in IMG/M
3300027775\|Ga0209177_10415656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	542	Open in IMG/M
3300027787\|Ga0209074_10066879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1141	Open in IMG/M
3300027815\|Ga0209726_10398761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	641	Open in IMG/M
3300027880\|Ga0209481_10025440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2646	Open in IMG/M
3300027880\|Ga0209481_10370384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	732	Open in IMG/M
3300027907\|Ga0207428_10089927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2385	Open in IMG/M
3300027907\|Ga0207428_10384117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1030	Open in IMG/M
3300027907\|Ga0207428_10453669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	934	Open in IMG/M
3300027909\|Ga0209382_10842199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	972	Open in IMG/M
3300027909\|Ga0209382_11178694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	785	Open in IMG/M
3300027956\|Ga0209820_1117394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	728	Open in IMG/M
3300028812\|Ga0247825_11055784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	591	Open in IMG/M
3300030592\|Ga0247612_1090105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300030634\|Ga0247636_10034516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300031184\|Ga0307499_10011062	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300031455\|Ga0307505_10407563	Not Available	647	Open in IMG/M
3300031547\|Ga0310887_10612919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	668	Open in IMG/M
3300031720\|Ga0307469_10139972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1790	Open in IMG/M
3300031740\|Ga0307468_100218777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1307	Open in IMG/M
3300031740\|Ga0307468_101313705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	659	Open in IMG/M
3300031740\|Ga0307468_101609088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	607	Open in IMG/M
3300031771\|Ga0318546_10471576	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031858\|Ga0310892_10558256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	770	Open in IMG/M
3300031908\|Ga0310900_11403645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	586	Open in IMG/M
3300032012\|Ga0310902_10430966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	846	Open in IMG/M
3300032012\|Ga0310902_11291030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	516	Open in IMG/M
3300032180\|Ga0307471_100150290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2239	Open in IMG/M
3300032180\|Ga0307471_101206114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	921	Open in IMG/M
3300032205\|Ga0307472_101103314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	751	Open in IMG/M
3300033433\|Ga0326726_12049788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	557	Open in IMG/M
3300034090\|Ga0326723_0089289	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300034817\|Ga0373948_0209242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	512	Open in IMG/M
3300034819\|Ga0373958_0018022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1276	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.41%
Environmental	Environmental	49.59%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.41%
Terrestrial	Environmental → Terrestrial	40.50%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.67%
Soil	Environmental → Terrestrial → Soil	38.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.92%
Freshwater	Environmental → Aquatic → Freshwater	6.61%
Sediment	Environmental → Aquatic → Sediment	1.65%
Peat	Environmental → Terrestrial → Peat	1.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	37.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.41%
Loam	Environmental → Terrestrial → Soil → Loam	6.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	37.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.65%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	33.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.65%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.83%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030634	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_138706692	3300000363	Soil	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLDMIGTTSILRSIIDKGYYMWRASYITV*
JGI10213J12805_101433012	3300000858	Soil	MQDDGRTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQFALGAQVPALKMIGAKPILRSITDKGYYIWRAGFLPA*
JGI10216J12902_1025469562	3300000956	Soil	MLGDAETAYLFQCGDEELFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSRSILRGVISKGYYIWRAGAFAA*
Ga0062595_1014358781	3300004479	Soil	MLDDVQTAYLFQCGEEDLFAVSPDKAGENIPRTSCTQGWLLRQQLQLGMRDLAPIAVSPKTILRGIIDKGYYIWRAGRMPA*
Ga0070691_100462223	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALNMIGNKPILRSITDKGYYIWRAGFLPA*
Ga0070687_1014706891	3300005343	Switchgrass Rhizosphere	MLRARLSNKGSQMLHDAQATYLFQCGDEELFAVSPDRAGKNIPRTSCTQGWLLRQELQLGNQDPVPTTIRSEPIRRGIIDKGYYIWRAG*
Ga0070709_110516711	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLGDAQPAYLFQCGDEELFAVSPDKAGRNIPRSSCTQGWILRQEFKLGRQDPVPVAIGPESVLRSISDKGYYIWRTGC*
Ga0070710_106801181	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPRQTEIFQMRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQAPALNMIGTKPILRSITDKGYYIWRAGFIPA*
Ga0070700_1002481111	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGRNIPRTSCTQGWLLRERFALGAQVPALNMISTTPILRSITDKGYYMWRAGFTPA*
Ga0070694_1001424201	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGRNIPRTSCTQGWLLRERFALGAQVPALNMIGTTPILRSITDKGYYMWRAGFTPA*
Ga0068859_1025371932	3300005617	Switchgrass Rhizosphere	MDDSHTAYLFQCGDEELFAVSADKAGGNIPRSSCTQGWLLRQVFQLGAGEPVPTEISPVPVLRGMTAKGYYIWRADRLPA*
Ga0070715_103416953	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQAPALNMIGTKPILRSITDKGYYIWRAGFIPA*
Ga0075422_101467473	3300006196	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLNMIGTTSILRSITDKGYYMWRVGFIPA*
Ga0075422_105513141	3300006196	Populus Rhizosphere	MRDDRQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLGAQAPALKMIGTKPILRSITDKGYYIWRELPSRLTHLKDAPVAQSA
Ga0068871_1005565991	3300006358	Miscanthus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA*
Ga0079222_100525952	3300006755	Agricultural Soil	MRDDGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDNGYYIWRAGFLPA*
Ga0079222_113051831	3300006755	Agricultural Soil	MRDDAQTAYLFQCSDEELFAISHDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMIGTTPILRSIIDK
Ga0079222_118422051	3300006755	Agricultural Soil	PTNGDNPMRDDAQTAYLFQCGHEELFAISQDKTGKNIPRTSCTQGWLLREQFVLGTQVPVLNMIGTTPILRSIADKGYYMWRAGFIPA*
Ga0079220_103277573	3300006806	Agricultural Soil	MRDDAQTAYLFQCSDEELFAISHDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMIGTTPILRSIIDKGYYMWRAGFIP
Ga0075428_1001130862	3300006844	Populus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLGAQVPALNMIGTKPILRSITDKGYYMWRAGFIPA*
Ga0075428_1002292511	3300006844	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAVSPDKAGANIPRSSCTQGWLLRQEFQLGRREPVPAAISAEPVLRSITDKGYYIWRAGLLPA*
Ga0075428_1002313742	3300006844	Populus Rhizosphere	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPVAIGSRSILRGIIAKGYYIWRAGTFAT*
Ga0075428_1006905092	3300006844	Populus Rhizosphere	MQGDAQTAYLFQCGDEELFAVSPDKAGTNIPRSSCTQGWLLRQEFQLGAENPVPAAIGSRSILRGIIAKGYYIWRAGSFAT*
Ga0075428_1007287392	3300006844	Populus Rhizosphere	MQVDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPVAIGSRSILRGIIAKGYYIWRAGTFAT*
Ga0075421_1013104312	3300006845	Populus Rhizosphere	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPAAIGSSSILRGIIAKGYYIWRAGTFAT*
Ga0075421_1013459332	3300006845	Populus Rhizosphere	MRADAQTAYLFQCGDEELFAVSPDKAGTNIPRSSCTQGWLLRQEFQLGAENPVPAAIGSRSILRGIIAKGYYIWRAGSFAT*
Ga0075421_1015279282	3300006845	Populus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLGAQVPALNMIGTKPILRSITDKGYYIWRAGFLPA*
Ga0075431_1006935412	3300006847	Populus Rhizosphere	MQVDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAETPVPAAIGSRSILRGIIAKGYYIWRAGTFAT*
Ga0075431_1007487301	3300006847	Populus Rhizosphere	MHAAYLFQCGDEELFAVSPDKAGTNIPRSSCTQGWQLRQAFQLGRQDPVPSVICPKSVLRSITDKGY
Ga0075433_103225894	3300006852	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLKMIGTTSVLRSITDKGYYMWRAGLIHV*
Ga0075425_1000380928	3300006854	Populus Rhizosphere	MLGDAQPAYLFQCGDEELFAVSPDKAGRNIPRSSCTQGWILRQEFKLGRQDPVPVAIGAESVLRSISDKGYYIWRTGC*
Ga0073934_108316022	3300006865	Hot Spring Sediment	CGDEELFAVSPDKDGTNIPRSSCTQGWILRQEFQLGMRNPAQAAISPQPVLRSIVDKGYYIWRAGR*
Ga0075429_1000654573	3300006880	Populus Rhizosphere	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAEDPVPAAIGSSSILRGIIAKGYYIWRAGTFAT*
Ga0079215_102726402	3300006894	Agricultural Soil	MLGDAETAYLFQCGDEALFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSRSILRGVISKGYYIWRAGAFAA*
Ga0075436_1008371591	3300006914	Populus Rhizosphere	DKRGLPMLGDAQPAYLFQCGDEELFAVSPDKAGRNIPRSSCTQGWILRQEFKLGRQDPVPVAIGAESVLRSISDKGYYIWRTGC*
Ga0079219_100326034	3300006954	Agricultural Soil	MRDDAQTAYLFQCSDEELFAISHDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMIGTTPILRSIIDKGYYMWRAGFIPA*
Ga0075435_1019320881	3300007076	Populus Rhizosphere	MRDDAQTAYLFQCGHEELFAISQDKTGKNIPRTSCTQGWLLREQFVLGTQVPVLNMIGTTPILRSI
Ga0105098_100491873	3300009081	Freshwater Sediment	MRDDAQTAFLFQCGDEELFAISPDETGRNIPRTSCTQGWLLREQFPLGAQVPTLNMIGTKPILRSITDKGYYIWRAGFLPA*
Ga0111539_107408782	3300009094	Populus Rhizosphere	MPDKQDIFQMREGGQTGYLFQCGDEELFAISRDKTGKNIPRTSCTQGWLLREQFPLGTQVPALNMIGTKPILRSIIDKGYYIWRAGFLPG*
Ga0111539_114366381	3300009094	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMIGTTPILRSITDKGYYMWRAGFIPA*
Ga0111539_120713081	3300009094	Populus Rhizosphere	LILQTVSAALRGVVTVVVRTPDAQQTEIFQMRDDGQTGYLFQCGDEELFAISPDNTGKNIPRTSCTQGWLLREQFSLDAQVPALNMIGTKLILRSIINKGYYIWRVGFLPA*
Ga0111539_121366232	3300009094	Populus Rhizosphere	EKLFAISPDKTGKNIPRTSCTQGWLLREQFALGAQVPALSMIGTLQILRSITDKGYYIWRAGFIPG*
Ga0111539_124140481	3300009094	Populus Rhizosphere	CGDEELFAISPDKTGKNIPRSSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIWRAGFLPA*
Ga0075418_101708901	3300009100	Populus Rhizosphere	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAETPVPAAIGSRSILRGIIAKGYYIWRAGTFAT*
Ga0075418_103630403	3300009100	Populus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKSGRNIPRTSCTQGWLLREQFPLGAQVPALNMIGTKPILRSITDKGYYIWRAGFLPA*
Ga0075418_105706371	3300009100	Populus Rhizosphere	MNEELFAVPPDKAGTNIPRSSCTRGQLRQEFQLGRQDPVPNAICPKSVLRSITDKGYSSGVRAGFLPKGTVVDRVSMF*
Ga0105091_100967972	3300009146	Freshwater Sediment	MPNKQDEFQMRDDGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQFPLGAQVPTLNMIGTKPILRSITDKGYYIWRAGFLPA*
Ga0105091_102847182	3300009146	Freshwater Sediment	YLFQCGDEELFAVSPDKAGTNIPRSSCTQGWLLRQEFQLGRQDPVPAAISAEPVLRSITDKGYYIWRAGLLPA*
Ga0114129_110435031	3300009147	Populus Rhizosphere	MLGDPQTAYLFQCGDEELFAVSSDKAGKNIPRSSCTQGWQLRQEFKLGAEDPVPAAIGSSSILRGIIAKGYYIWRAGTFAT*
Ga0114129_116945141	3300009147	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAVSPDRAGTNIPRSSCTQGWQLRQAFQLGRQDPVPSVICPKSVLRSITDKGYYIWRAGWLPAYGDRRDRVSMF*
Ga0111538_106974902	3300009156	Populus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDNTGKNIPRTSCTQGWLLREQFSLDAQVPALNMIGTKLILRSIINKGYYIWRVGFLPA*
Ga0111538_116940843	3300009156	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLREQFPLGAQAPALKMIGTKPILRSITDKGYYMWRVGFIPA*
Ga0111538_117412471	3300009156	Populus Rhizosphere	MRDDEQTAYLFQCGDEKLFAISPDKTGKNIPRTSCTQGWLLRQQFALGAQVPALSMIGTLQILRSITDKGYYIWRAGFIPG*
Ga0111538_120002143	3300009156	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLNMIGTTPILRSITDKGYYMWRAGFTPA*
Ga0075423_102480573	3300009162	Populus Rhizosphere	MLGDAQPAYLFQCGDEELFAVSPDKAGRNIPRSSCTQGWILRQEFKLGRQDPVPVAIGAESVLRSISDKGYYIWRTGR*
Ga0075423_112961612	3300009162	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGKNIPRTSCTQGWLLREQFVLGTQVPVLNMIGTTPILRSIADKGYYMWRAGFIPA*
Ga0105104_101635402	3300009168	Freshwater Sediment	MRDDGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQFPLGAQVPTLNMIGTKPILRSITDKGYYIWRAGFLPA*
Ga0105249_127720781	3300009553	Switchgrass Rhizosphere	MRDAGQTGYLFQCDDEELIARSPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALNMIGNKPILRSITDKGYYIWRAGFLPA*
Ga0105347_12043472	3300009609	Soil	MLGDAETAYLFQCGDEELFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA*
Ga0105089_10609591	3300009809	Groundwater Sand	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPAAIGSRSILRGIIAKGYYIWRAGTFAT*
Ga0134122_100117136	3300010400	Terrestrial Soil	MRNDAQTAYLFQCGDEELFAISQDETGKNIPRTSCTQGWLLRERFALGAQVPALSMIGTTPILRSITDKGYYMWRAGFIPA*
Ga0150985_1189635832	3300012212	Avena Fatua Rhizosphere	MPDNAQTAYLFQCGDEELFAVSSDKAGENIPRSSCTQGWLLRQAFRLGLQHPVPTAISPLPILRSITDKGYYIWRSGT*
Ga0157335_10319562	3300012492	Arabidopsis Rhizosphere	MPDKQDIFQMRDEGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITD
Ga0164300_102432442	3300012951	Soil	MRDDAQTAYLFQCGDEELFAISQDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMISTTPILRSITDKGYYMWRAGFIPA*
Ga0164299_110088402	3300012958	Soil	MRDDAQTAYLFQCGDEELFAVSADKAGTNIPRSSCTQGWLLREQFPLDAQAPALNMIGTKPILRSITDKGYYIWRAGFIPA*
Ga0164305_113455631	3300012989	Soil	SNDRGSPVSDNAQTAYLFECGEEGLFAVSADKAGGNIPRSSCTQGWLLRRAFRFGLHDPVPEEISPLPILRSITEKGYYIWRSGI*
Ga0157380_111790422	3300014326	Switchgrass Rhizosphere	MRDDAQTAYLFQCGDEELFAVSPDKGGENIPRSSCTQGWLLRQEFQLGRQNPVPAAIAREPVLRSITDKGYYIWRAGLLPA*
Ga0157376_108582402	3300014969	Miscanthus Rhizosphere	MPDKQDIFQMRDEGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDNGYYIWRAGFLPA*
Ga0157376_121301921	3300014969	Miscanthus Rhizosphere	MLVRTPDARQTEIFQMRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA*
Ga0167658_10549131	3300015195	Glacier Forefield Soil	MDDSQTAYLFQCGDEDLFAVSADRAGGNIPRSSCTQGWLLRQTFQLGADDPVPTAISPVPVLRGMTAKGYYIWRADRLPA*
Ga0180093_10036424	3300015258	Soil	MLGDAETAYLFQCGDEDLFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA*
Ga0132258_104639657	3300015371	Arabidopsis Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGKNIPRTSCTQGWLLRERFALGAQVPVLNMIGTTSILRSITDKGYYMWRAGFIPA*
Ga0132258_115390631	3300015371	Arabidopsis Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGKNISRTSCTQGWLLREQFVLGAQVPALKMIGTTPMLRSITDKGYYMWRAGFIPG*
Ga0132258_132127102	3300015371	Arabidopsis Rhizosphere	MPDKQDIFQMRDEGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIWRAGFLPA*
Ga0132256_1018862141	3300015372	Arabidopsis Rhizosphere	TAYLFQCGDEELFAISQDKTGKNISRTSCTQGWLLREQFVLGAQVPALKMIGTTPMLRSITDKGYYMWRAGFLPA*
Ga0132257_1019011732	3300015373	Arabidopsis Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRAGFLPA*
Ga0132257_1029851761	3300015373	Arabidopsis Rhizosphere	MRDDAQTAYLFQCSDEELFAISHDKTGKNIPRTSCTQGWLLRERFALGAQVPVLNMIGTTSILRSITDKGYYMWRAGFIPA*
Ga0132255_1028249621	3300015374	Arabidopsis Rhizosphere	DDGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIWRAGFLPA*
Ga0132255_1036384412	3300015374	Arabidopsis Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGKNISRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA*
Ga0163161_117786621	3300017792	Switchgrass Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGRNIPRTSCTQGWLLRERFALGAQVPALNMISTTPILRSITDKGYYMWRAGFTPA
Ga0190272_127590762	3300018429	Soil	MTEDAQTAYLFQCGDEELFAVSADKAGENIPRSSCTQGWLLRQELQIGIEGPAAAAVGPEPIRRGITDKGYYIWRAG
Ga0190271_107402683	3300018481	Soil	MLGDAETAYLFQCGDEELFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA
Ga0180117_13784041	3300019248	Groundwater Sediment	MLGDAETAFLFQCGDEELFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA
Ga0180107_11181461	3300020064	Groundwater Sediment	MLGDAETAYLFQCGDEELFAVSSDKVGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA
Ga0207685_100411981	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQAPALNMIGTKPILRSITDKGYYIWRAGFIPA
Ga0207686_100368673	3300025934	Miscanthus Rhizosphere	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALNMIGNKPILRSITDKGYYIWRAGFLPA
Ga0207704_110244462	3300025938	Miscanthus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGRNIPRTSCTQGWLLRERFALGAQVPALNMISTTPILRSITDKGYYIWRAGFLPA
Ga0209177_103343552	3300027775	Agricultural Soil	SLSDGLLAALRGVSMLVRTPDAPTNRDIPMRDDAQTAYLFQCSDEELFAISHDKTGKNIPRTSCTQGWLLREQFALGAQVPALNMIGTTPILRSIIDKGYYMWRAGFIPA
Ga0209177_104156561	3300027775	Agricultural Soil	TGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDNGYYIWRAGFLPA
Ga0209074_100668792	3300027787	Agricultural Soil	MRDDGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDNGYYIWRAGFLPA
Ga0209726_103987612	3300027815	Groundwater	MSDGAQTAYLFQCCDEELFAVSPDKAGKNIPRSSCTQGWQLRQELQLGIQEPVPTAISPKSILRGIIDKGYYIWRAGRIPA
Ga0209481_100254402	3300027880	Populus Rhizosphere	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPAAIGSSSILRGIIAKGYYIWRAGTFAT
Ga0209481_103703842	3300027880	Populus Rhizosphere	MRADAQTAYLFQCGDEELFAVSPDKAGTNIPRSSCTQGWLLRQEFQLGAENPVPAAIGSRSILRGIIAKGYYIWRAGSFAT
Ga0207428_100899276	3300027907	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLKMIGTTSVLRSITDKGYYMWRAGLIHV
Ga0207428_103841171	3300027907	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAISQDKTGNNIPRTSCTQGWLLRERFALGAQVPVLDMIGTTSILRSIIDKGYYMWRASYITV
Ga0207428_104536691	3300027907	Populus Rhizosphere	MREGGQTGYLFQCGDEELFAISRDKTGKNIPRTSCTQGWLLREQFPLGTQVPALNMIGTKPILRSIIDKGYYIWRAGFLPG
Ga0209382_108421991	3300027909	Populus Rhizosphere	MQVDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPVAIGSRSILRGIIAKGYYIWRAGTFAT
Ga0209382_111786942	3300027909	Populus Rhizosphere	MRDDAQTAYLFQCGDEELFAVSPDKAGANIPRSSCTQGWLLRQEFQLGRREPVPAAISAEPVLRSITDKGYYIWRAGLLPA
Ga0209820_11173942	3300027956	Freshwater Sediment	TAFLFQCGDEELFAISPDETGRNIPRTSCTQGWLLREQFPLGAQVPTLNMIGTKPILRSITDKGYYIWRAGFLPA
Ga0247825_110557842	3300028812	Soil	YLFQCGDEELFAVSSDKAGNNIPRTSCTQGWQLREEFSLGAEEPVPAAIGSKSILRGVISKGYYIWRAGAFAA
Ga0247612_10901051	3300030592	Soil	MRGDAQTAYLFQCGDEELFAVSTDKAGKNIPRSSCTQGWQLLQEFSLGAENPVPAAIGSRSILRGII
Ga0247636_100345162	3300030634	Soil	MRGDAQTAYLFQCGDEELFAVSPDKAGKNIPRSSCTQGWQLRQEFKLGAENPVPAAIGSKSILRGIIAKGYYIWRAGTFAT
Ga0307499_100110622	3300031184	Soil	MRDDGQTGYLFQCGDEKLFAISPDKTGKNIPRTSCTQGWLLREQFPLGAQVPALNMIGTKPILRSITDKGYYMWRAGFLPA
Ga0307505_104075631	3300031455	Soil	ARATDKGGLPMLSDVRTAYFFQCGDEALFAVSPDKAGKNIPRSSCTQGWLLKQEFQLGAHDPVPTAISPQPILRSIIAKGYYIWRASRLPD
Ga0310887_106129191	3300031547	Soil	MRDEGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIWRAGFLPA
Ga0307469_101399723	3300031720	Hardwood Forest Soil	EIFQMRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVTALNMIGNKPILRSITDKGYYIWRAGFLPA
Ga0307468_1002187772	3300031740	Hardwood Forest Soil	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGTKPILRSITDKGYYIWRAGFLPA
Ga0307468_1013137051	3300031740	Hardwood Forest Soil	EELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALNMIGNKPILRSISDKGYYIWRAGFLPA
Ga0307468_1016090882	3300031740	Hardwood Forest Soil	MRDDAQTAYLFQCGDEELFAISQDKTGRNIPRTSCTQGWLLRERFALGAQVPALNMIGTTPILRSITDKGYYMWRAGFTPA
Ga0318546_104715761	3300031771	Soil	MSGNTRHAFFFQCGDEHLFAVSLEKTGVNIPRSTCTQGWVLREEFLLGVREPVPTGISPGPILRAITDKGYY
Ga0310892_105582562	3300031858	Soil	MRDEGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIWRAGFIPA
Ga0310900_114036451	3300031908	Soil	LTFQTVLAALRGVTMLVRTPDARQTEIFQMRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA
Ga0310902_104309661	3300032012	Soil	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA
Ga0310902_112910302	3300032012	Soil	MRDEGQTGYLFQCGDEELFAISPDKTGKNIPRTSCTQGWLLREQVPLDAQVPGLMIGIKPILRSITDKGYYIRRAGFLPA
Ga0307471_1001502903	3300032180	Hardwood Forest Soil	MRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLGAQVPALKMIGTKPILRSITDKGYYIWRAGFLPA
Ga0307471_1012061142	3300032180	Hardwood Forest Soil	MIQCVTMHRRRTCFRCGDEELFAISQDKTGKNIPRTSCTQGWLLRERFALGAQVPALNMIGTTPILRSITDKGYYMWRAGFTPA
Ga0307472_1011033141	3300032205	Hardwood Forest Soil	MRDDGQTGYLFQCGDEELFAIYKTGRNIPRTSCTQGWLLREQFPLGAQVPALKMIGTKPILRSITDKGYYIWRAGFLPA
Ga0326726_120497882	3300033433	Peat Soil	AQTAYLFQCGEEELFAVSPDKAGENIPRSSCTQGWRLRQAFRLGMQDPVPTAISPVPILRSINDKGYYIWRAG
Ga0326723_0089289_1048_1281	3300034090	Peat Soil	MSDNAQTAYLFQCGEEELFAVSPDKAGENIPRSSCTQGWRLRQAFRLGMQDPVPTAISPVPILRSINDKGYYIWRAG
Ga0373948_0209242_271_510	3300034817	Rhizosphere Soil	DDAQTAYLFQCGDEELFAISQDKTGKNIPRTSCTQGWLLRERFALGAQVPVLNMIGTTSILRSITDKGYYMWRAGFIPA
Ga0373958_0018022_317_607	3300034819	Rhizosphere Soil	MLVRTPDARQTEIFQMRDDGQTGYLFQCGDEELFAISPDKTGRNIPRTSCTQGWLLREQFPLDAQVPALKMIGNKPILRSITDKGYYIWRASFLPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072790

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences