Metagenome / Metatranscriptome Family F072711

Overview

Basic Information

• Family ID: F072711
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 121
• Average Sequence Length: 54 residues
• Representative Sequence: MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAELYLKIAQELEALVEG
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 121

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 86.78 %
• % of genes near scaffold ends (potentially truncated): 21.49 %
• % of genes from short scaffolds (< 2000 bps): 81.82 %
• Associated GOLD sequencing projects: 78
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (78.512 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.669 % of family members)
• Environment Ontology (ENVO): Unclassified (46.281 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (46.281 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 56.63%
  β-sheet: 0.00%
  Coil/Unstructured: 43.37%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.2: Ribonucleotide reductase-like	d2uw1a_	2uw1	0.91587
a.25.1.1: Ferritin	d1yuza1	1yuz	0.90728
a.25.1.9: Rv2844-like	d2ib0a1	2ib0	0.90054
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.89846
a.25.1.1: Ferritin	d1nfva_	1nfv	0.89088

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00521	DNA_topoisoIV	14.05
PF11967	RecO_N	4.96
PF05239	PRC	3.31
PF08811	DUF1800	2.48
PF08840	BAAT_C	1.65
PF02565	RecO_C	1.65
PF13191	AAA_16	0.83
PF03600	CitMHS	0.83
PF08734	GYD	0.83
PF13280	WYL	0.83
PF13424	TPR_12	0.83
PF00293	NUDIX	0.83
PF07504	FTP	0.83
PF00005	ABC_tran	0.83
PF03772	Competence	0.83
PF00144	Beta-lactamase	0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	14.05
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	2.48
COG1381	Recombinational DNA repair protein RecO (RecF pathway)	Replication, recombination and repair [L]	1.65
COG0658	DNA uptake channel protein ComEC, N-terminal domain	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.83
COG3227	Zn-dependent metalloprotease (Neutral protease B)	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.51 %
Unclassified	root	N/A	21.49 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.51 %
Unclassified	root	N/A	21.49 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.51 %
Unclassified	root	N/A	21.49 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	76.03 %
Unclassified	root	N/A	21.49 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	73.55 %
Unclassified	root	N/A	21.49 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	69.42 %
Unclassified	root	N/A	21.49 %

Level 7

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	64.46 %
Unclassified	root	N/A	21.49 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.31 %

Level 8

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	59.50 %
Unclassified	root	N/A	21.49 %
unclassified Xanthobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae	3.31 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.83 %

Level 9

Name	Rank	Taxonomy	Distribution
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	31.40 %
Unclassified	root	N/A	21.49 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.96 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	3.31 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.83 %

Level 10

Name	Rank	Taxonomy	Distribution
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	31.40 %
Unclassified	root	N/A	21.49 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3.31 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	3.31 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.83 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.83 %
Afipia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp.	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2124908029|A2_v1_NODE_26371_len_760_cov_5_530263	Not Available	810
2124908043|A2_c1_ConsensusfromContig35072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1400
2124908043|A2_c1_ConsensusfromContig68403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1844
3300001545|JGI12630J15595_10055145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	792
3300001593|JGI12635J15846_10226030	All Organisms → cellular organisms → Bacteria	1218
3300001661|JGI12053J15887_10350128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	715
3300002245|JGIcombinedJ26739_100373831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1305
3300005341|Ga0070691_10671993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	619
3300005471|Ga0070698_100215804	Not Available	1853
3300005950|Ga0066787_10011712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1416
3300005950|Ga0066787_10059318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	751
3300005952|Ga0080026_10012342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2015
3300005993|Ga0080027_10124942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	976
3300005993|Ga0080027_10341813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	599
3300005994|Ga0066789_10020429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2935
3300006041|Ga0075023_100187657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	789
3300006050|Ga0075028_100389613	Not Available	794
3300006050|Ga0075028_100415886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	771
3300006050|Ga0075028_100773738	Not Available	583
3300006172|Ga0075018_10386481	Not Available	709
3300007255|Ga0099791_10040725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp.	2062
3300007255|Ga0099791_10107448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1288
3300007255|Ga0099791_10208462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	922
3300007258|Ga0099793_10058076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1724
3300007258|Ga0099793_10227160	Not Available	898
3300007265|Ga0099794_10051833	Not Available	1977
3300007788|Ga0099795_10036240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1730
3300009038|Ga0099829_10233974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	1495
3300009038|Ga0099829_10417901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1109
3300009143|Ga0099792_10103413	Not Available	1500
3300009148|Ga0105243_10958658	Not Available	855
3300010877|Ga0126356_10831196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1900
3300011269|Ga0137392_10624430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	894
3300011270|Ga0137391_10168326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1910
3300011444|Ga0137463_1010693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3145
3300012096|Ga0137389_10219568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1589
3300012203|Ga0137399_11017403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	698
3300012203|Ga0137399_11287753	Not Available	615
3300012205|Ga0137362_10359720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	1260
3300012363|Ga0137390_11063506	Not Available	759
3300012685|Ga0137397_10010665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6395
3300012685|Ga0137397_10066657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2602
3300012685|Ga0137397_10143700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1766
3300012685|Ga0137397_10245891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1333
3300012685|Ga0137397_10273902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1257
3300012685|Ga0137397_11017544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	609
3300012922|Ga0137394_10750059	Not Available	820
3300012922|Ga0137394_10834659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	771
3300012927|Ga0137416_10425585	Not Available	1130
3300012927|Ga0137416_10497587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1049
3300012929|Ga0137404_10095841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2383
3300012929|Ga0137404_10097993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2359
3300012944|Ga0137410_10152227	All Organisms → cellular organisms → Bacteria → Proteobacteria	1763
3300012944|Ga0137410_10234809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1432
3300012944|Ga0137410_10686441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	852
3300012944|Ga0137410_11948687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	521
3300012985|Ga0164308_10339402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1208
3300013306|Ga0163162_10154169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2416
3300015241|Ga0137418_10013701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7482
3300015241|Ga0137418_10296337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1354
3300015245|Ga0137409_10039582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4528
3300015245|Ga0137409_10068381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3329
3300017997|Ga0184610_1191705	All Organisms → cellular organisms → Bacteria	681
3300018053|Ga0184626_10017192	All Organisms → cellular organisms → Bacteria → Proteobacteria	2905
3300019789|Ga0137408_1303941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1312
3300019789|Ga0137408_1436481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1261
3300019866|Ga0193756_1030736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	758
3300019874|Ga0193744_1005510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	2306
3300019885|Ga0193747_1142178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	552
3300019886|Ga0193727_1038917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1586
3300019886|Ga0193727_1182823	Not Available	537
3300019887|Ga0193729_1056284	Not Available	1585
3300019887|Ga0193729_1085868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1219
3300019887|Ga0193729_1144572	Not Available	864
3300020002|Ga0193730_1057542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1117
3300020012|Ga0193732_1012501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1467
3300020170|Ga0179594_10355222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	556
3300020579|Ga0210407_11469930	Not Available	504
3300021086|Ga0179596_10010877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2981
3300021086|Ga0179596_10207626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	955
3300021478|Ga0210402_10893856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	815
3300024288|Ga0179589_10267303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	763
3300025905|Ga0207685_10165436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1013
3300025915|Ga0207693_10388126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1092
3300025934|Ga0207686_11775897	Not Available	510
3300025938|Ga0207704_11019449	Not Available	701
3300026281|Ga0209863_10013689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2540
3300026285|Ga0209438_1061236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1238
3300026285|Ga0209438_1201280	Not Available	531
3300026291|Ga0209890_10019207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2680
3300026345|Ga0257148_1008408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	768
3300026354|Ga0257180_1026529	All Organisms → cellular organisms → Bacteria → Proteobacteria	773
3300026355|Ga0257149_1071064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	511
3300026361|Ga0257176_1034466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	771
3300026374|Ga0257146_1042484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	737
3300026482|Ga0257172_1034886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	912
3300026497|Ga0257164_1035116	Not Available	767
3300026508|Ga0257161_1095069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	619
3300026557|Ga0179587_10069889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	2064
3300026557|Ga0179587_10737089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	649
3300026557|Ga0179587_11111014	Not Available	520
3300027521|Ga0209524_1016290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1522
3300027535|Ga0209734_1007078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2002
3300027587|Ga0209220_1093878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789
3300027651|Ga0209217_1058747	All Organisms → cellular organisms → Bacteria	1146
3300027655|Ga0209388_1092988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	866
3300027669|Ga0208981_1172949	Not Available	546
3300027671|Ga0209588_1000807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7958
3300027678|Ga0209011_1015661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2494
3300027727|Ga0209328_10087308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	954
3300027894|Ga0209068_10128878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1355
3300027894|Ga0209068_10217644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1055
3300028047|Ga0209526_10039496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3318
3300028047|Ga0209526_10636233	Not Available	679
3300028792|Ga0307504_10034259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1366
3300028792|Ga0307504_10230761	Not Available	669
3300028824|Ga0307310_10198480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	946
3300031231|Ga0170824_119915136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	940
3300031446|Ga0170820_10422427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	958
3300031474|Ga0170818_114378379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	917
3300031708|Ga0310686_105589749	Not Available	744

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.69%
Host-Associated	Host-Associated	3.31%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.43%
Aquatic	Environmental → Aquatic	8.26%
Plants	Host-Associated → Plants	3.31%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.43%
Sediment	Environmental → Aquatic → Sediment	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.65%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.77%
Loam	Environmental → Terrestrial → Soil → Loam	14.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.65%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.65%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.48%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.83%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2124908029	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_v1_00059410	2124908029	Soil	MMIDLKPKLIAALGNAQEYIDLATSAKNRGEREFYERIAELYLKIGQELEALVEG
A2_c1_00906010	2124908043	Soil	NGGSILMMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVE
A2_c1_00450800	2124908043	Soil	MMIDLKPKLIAALGNAQEYIDLATSAKNRGEREFYERIAELYLKIAQELEALVEG
JGI12630J15595_100551452	3300001545	Forest Soil	MMIDLKPRLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIARELEALVEE*
JGI12635J15846_102260302	3300001593	Forest Soil	MIDPKPKLIAALGNAQEYLDLAISAQDRGEREFYKRIAELYLKIAQELDAMMGE*
JGI12053J15887_103501281	3300001661	Forest Soil	MIDPKPRLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAIMGE*
JGIcombinedJ26739_1003738313	3300002245	Forest Soil	MMIDPKPKLIAALGNAQEYIDLATSAQDRGEREFYERIAELYIKIAQELEALVEG*
Ga0070691_106719932	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MMIDPKAKLIDILGNAQEYLDLATKSTDRGERELYERIVALYLKIAQELETLIDK*
Ga0070698_1002158042	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MMIDPKPRLIAALGNAQEYIDLATSAKDRGEREFYERIAELYIRIAQELEVLVEG*
Ga0066787_100117122	3300005950	Soil	MMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVEG*
Ga0066787_100593181	3300005950	Soil	LGNAQEYIDLATSAKDRGERAFYERIAELYIKIARELEALAEG*
Ga0080026_100123421	3300005952	Permafrost Soil	MMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKI
Ga0080027_101249421	3300005993	Prmafrost Soil	LMMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVEG*
Ga0080027_103418132	3300005993	Prmafrost Soil	MMMIDPKPKLIAALGNAQEYIDLATSAKDRGERAFYERIAELYIKIARELEALAEG*
Ga0066789_100204292	3300005994	Soil	MMIDPKPKLIAALGNAQEYIDLATSAKDRGERAFYERIAELYIKIARELEALAEG*
Ga0075023_1001876572	3300006041	Watersheds	MIDPKPKLIAVLGNAQEYLDLAESTKDRDEREFYQRIAELYLKIAQELEAMMDG*
Ga0075028_1003896131	3300006050	Watersheds	LGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG*
Ga0075028_1004158861	3300006050	Watersheds	MIDPKPRLIAVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG*
Ga0075028_1007737382	3300006050	Watersheds	MMIDPKPRLIAALGNAQEYIDLATSAKDRGEREFYERIAELYIKIAQEFEALVEG*
Ga0075018_103864811	3300006172	Watersheds	MMIDPKAKLVDVLGNAQEYLDLATKSTDRGERELYERIVALYLKIAQELETLIDK*
Ga0099791_100407252	3300007255	Vadose Zone Soil	MIDPKPKLIEILGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG*
Ga0099791_101074481	3300007255	Vadose Zone Soil	MIDPKPRLIAALGNVQEYLDLAISVQDRSEREFYEPIAELYFKIAQELEAMMGG*
Ga0099791_102084622	3300007255	Vadose Zone Soil	MIDPKPKLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMMGE*
Ga0099793_100580762	3300007258	Vadose Zone Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRSEREFYQRIAELYLKIAQELEAMMGG*
Ga0099793_102271603	3300007258	Vadose Zone Soil	SRKRSSSNGGSVFMMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAVLYIKIAQELDALVEG*
Ga0099794_100518333	3300007265	Vadose Zone Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG*
Ga0099795_100362401	3300007788	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAVLYIKIAQELDAL
Ga0099829_102339741	3300009038	Vadose Zone Soil	EYLDLATSAKDRGERAFYERIAELYIKIAQELEALVEG*
Ga0099829_104179013	3300009038	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIAQELEALVEG*
Ga0099792_101034133	3300009143	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAVLYIKIAQELDALVEG*
Ga0105243_109586581	3300009148	Miscanthus Rhizosphere	RRIAMMIDPKAKLIDILGNAQEYLDLATKSTDRGERELYERIVALYLKIAQELETLIDK*
Ga0126356_108311961	3300010877	Boreal Forest Soil	LDNAQEYLDLATSAHDRGEREFYKRIAELYLKIAQELEAMTGE*
Ga0137392_106244301	3300011269	Vadose Zone Soil	MMIDPKPKLIAALGSAQEYIDLATSAKDRGERAFYERIAELYIKIAQELEALVEG*
Ga0137391_101683263	3300011270	Vadose Zone Soil	MMIDPKSRLIAALGNAQEYIDLAASAKDRGEREFYERIAELYIRIAQELDALVEG*
Ga0137463_10106934	3300011444	Soil	MIDPKPKLIAVLGNVQEYLDLAASTQDRGEREFYQRIAELYLKIARELEAMMGG*
Ga0137389_102195682	3300012096	Vadose Zone Soil	MIDPKPKLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMVGE*
Ga0137399_110174032	3300012203	Vadose Zone Soil	MIDPKPKLTAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAIMGE*
Ga0137399_112877532	3300012203	Vadose Zone Soil	GNDPPAAAGVSSMMINPKGKLIAVLGNAQEYIDLAIGAKDRREREFYERIAELYIKIAHELEALIDG*
Ga0137362_103597202	3300012205	Vadose Zone Soil	DPKPKLIEILGNVQEYLDLAASTKDRSEREFYQRIAELYLKIAQELEAMMGG*
Ga0137390_110635061	3300012363	Vadose Zone Soil	RSSSNGGSILMMIDPKPKLIAALGSAQEYIDLATSAKDRGERAFYERIAELYIKIAQELEALVEG*
Ga0137397_100106653	3300012685	Vadose Zone Soil	MIDPKPELIAALGNVQEFLDLAISLQDRSERKFYEPIAELYLKIAQELDAMMGG*
Ga0137397_100666571	3300012685	Vadose Zone Soil	MMIDPKAKLIAVLGNAQEYIDLAIGAEDRGEREFYERIAELYLKIAQELEAMMGG*
Ga0137397_101437002	3300012685	Vadose Zone Soil	MIDPKPKLIAAFGNAQEYLDLAISAQDRGEREFDERIAELYLKIAQELEARLGG*
Ga0137397_102458913	3300012685	Vadose Zone Soil	MIDPKPKLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAIMGE*
Ga0137397_102739021	3300012685	Vadose Zone Soil	MMINPKGKLIAVLGNAQEYIDLAIGAKDRREREFYERIAELYIKIAHELEALIDG*
Ga0137397_110175441	3300012685	Vadose Zone Soil	MIDPKAKLIAVLGNAQEYIDLAIGAEDRGEREFYQRIAELYLKIAQELEAMMG
Ga0137394_107500591	3300012922	Vadose Zone Soil	DPQPKLIAALSNAQEYVDLAISAKDRGEREFDERIAELYLKIAQVFEAMMGG*
Ga0137394_108346593	3300012922	Vadose Zone Soil	MIDPKPRLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEATMGE*
Ga0137416_104255851	3300012927	Vadose Zone Soil	MMIDPKPKLIAALSNAQEYLDLAVSAKDRGEREFYERIAELYLKIAQVLEAMMGG*
Ga0137416_104975871	3300012927	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYIDLATSAKDRGEREFYERIAELYIRIAQELDALVEG*
Ga0137404_100958413	3300012929	Vadose Zone Soil	MIDPKPKLIEILGNLQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG*
Ga0137404_100979932	3300012929	Vadose Zone Soil	MIDPKPKLIAALDNAREYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMMGE*
Ga0137410_101522274	3300012944	Vadose Zone Soil	MIDPKAKLIAVLGNAQEYIDLAIGAEDRGEREFYERIAELYLKIAQELEAMMGG*
Ga0137410_102348092	3300012944	Vadose Zone Soil	MIDPKPELIAALGNVQEYLDLAISLQDRSERKFYEPIAELYLKIAQELDAMMGG*
Ga0137410_106864411	3300012944	Vadose Zone Soil	MMIDPKPKLIAALSNAQEYLDLAISAKDRGEREFYERIAELYLKIAQVFEAMMGG*
Ga0137410_119486872	3300012944	Vadose Zone Soil	MIDPKPKLTAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMMDG*
Ga0164308_103394022	3300012985	Soil	MMIDPKAKLIDILAMRRNTLISRRTDRGERELYERIVALYLKIAQELETLIDK*
Ga0163162_101541695	3300013306	Switchgrass Rhizosphere	MMIDPKAKLIDILGNAQEYLDRATKSTDRGERELYERIVALYLKIAQELETLIDK*
Ga0137418_100137019	3300015241	Vadose Zone Soil	MIDPKPKLIAAFGNAQEYLDLAISAQDRGEREFDERIAELYLKIAQELEAMLGG*
Ga0137418_102963371	3300015241	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAELYLKIAQVFEAMMGG*
Ga0137409_100395822	3300015245	Vadose Zone Soil	MIDPKPELIAALGNVQEYLDLAISVQDRSEREFYEPIAELYFKIAQELEAMMGG*
Ga0137409_100683811	3300015245	Vadose Zone Soil	MIDPKPKLIAAFGNAQEYLDLAISAQDRGKREFDERIAELYLKIAQELEAMLGG*
Ga0184610_11917051	3300017997	Groundwater Sediment	MINPKPRLKAVLGNAQEYLDLAISAQDRGEREFYERIAKLYLKIAQELEAMMGG
Ga0184626_100171922	3300018053	Groundwater Sediment	MIDSKPRLIAALGNVQEYLDLATSAQDRGEREFYERIAELYLKIAQELEAMMGG
Ga0137408_13039411	3300019789	Vadose Zone Soil	MIDPKPKLIEILGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0137408_14364812	3300019789	Vadose Zone Soil	MIDPKPKLIAALDNAREYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMMGE
Ga0193756_10307361	3300019866	Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0193744_10055102	3300019874	Soil	MIDPKPKLIAVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGR
Ga0193747_11421782	3300019885	Soil	LMMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVEG
Ga0193727_10389173	3300019886	Soil	MIDPKPKLIAALRNAQEYLDLATSAQDRGEREFYKRIAQLYLKIAQELEAMMGE
Ga0193727_11828232	3300019886	Soil	LGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0193729_10562842	3300019887	Soil	MMIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVEG
Ga0193729_10858681	3300019887	Soil	MMIDLKPRLIAALGNAQEYLDLATSAEDRGERAFYERIAELYIKIARELEALVEG
Ga0193729_11445722	3300019887	Soil	MMIDPKPKLIAALGNAQEYIDLATSAKDRGERAFYERIAELYIKIAQELEALVEG
Ga0193730_10575422	3300020002	Soil	MIIDPKPKLIAVLGNAQEYIDLATSAEDRGEREFYERIAELYIKIARELEALVEG
Ga0193732_10125015	3300020012	Soil	MIDPKPKLIAVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGE
Ga0179594_103552221	3300020170	Vadose Zone Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRSEREFYQRIAELYLKIAQELEAMMGG
Ga0210407_114699301	3300020579	Soil	MMIDPKAKLIDILGNAQEYLDLATKSTDRGERELYERIVALYLKIAQELETLI
Ga0179596_100108772	3300021086	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIAQELEALVEG
Ga0179596_102076262	3300021086	Vadose Zone Soil	MMIDPKSRLIAALGNAQEYIDLAASAKDRGEREFYERIAELYIRIAQELDALVEG
Ga0210402_108938562	3300021478	Soil	MMIDPKAKLIDILGNAQEYLDLATKSTNRGERQLYERIVALYLKIAQELETLIDK
Ga0179589_102673033	3300024288	Vadose Zone Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKI
Ga0207685_101654361	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MMIDPKAKLIDILGNAQEYLDRATKSTDRGERELYERIVALYLKIAQELETLIDK
Ga0207693_103881261	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MMIDPKASLIDILGNAQEYLDLATKSTDRGERELYERIVALYLKIAQEFETAVWPAASRRNPR
Ga0207686_117758971	3300025934	Miscanthus Rhizosphere	AQEYLDLATKSTDRGERELYERIVALYLKIAQELETLIDK
Ga0207704_110194491	3300025938	Miscanthus Rhizosphere	MMIDPKAKLIDILGNAQEYLDLATKSTDRGERELYERIVALYLKIA
Ga0209863_100136896	3300026281	Prmafrost Soil	MMMIDPKPKLIAALGNAQEYIDLATSAKDRGERAFYERIAELYIKIARELEALVEG
Ga0209438_10612361	3300026285	Grasslands Soil	MMIDPKPKLIAALSNAQEYLDLAISAKDRGEREFDERIAELYLKIAQVFEAMMGG
Ga0209438_12012802	3300026285	Grasslands Soil	MMINPKGKLIAVLGNAQEYIDLAIGAKDRREREFYERIAELYIKIAHELEALIDG
Ga0209890_100192072	3300026291	Soil	MMIDPKPKLIAALGNAQEYIDLATSAKDRGERAFYERIAELYIKIARELEALAEG
Ga0257148_10084083	3300026345	Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEA
Ga0257180_10265293	3300026354	Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMIGG
Ga0257149_10710643	3300026355	Soil	MIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMM
Ga0257176_10344662	3300026361	Soil	MIDPKPRLIAALGNVQEYLDLATSVQDRSEREFYEPIAELYFKIAQELEAMMGG
Ga0257146_10424842	3300026374	Soil	MIDPKAKLIAVLGNAQEYIDLAIGAEDRGEREFYERIAELYLKIAQE
Ga0257172_10348862	3300026482	Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERLAQLYLKIAQELEALVEG
Ga0257164_10351161	3300026497	Soil	RWHCQTWLDGRGLMIDPKPKLIEVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0257161_10950691	3300026508	Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAELYLKIAQELEALVEG
Ga0179587_100698891	3300026557	Vadose Zone Soil	MMIDPKPKLIAALGNAQEYLDLATSAKDRGEREFYERIAVLYIKIAQELDALVEG
Ga0179587_107370891	3300026557	Vadose Zone Soil	MMIDPQPKLIAALSNAQEYVDLAISAKDRGEREFDERIAELYLKIAQVFEAMMGG
Ga0179587_111110142	3300026557	Vadose Zone Soil	MIDPKAKLIAVLGNAQEYIDLAIGAEDRGEREFYERIAELYLKIAQELEAMMGG
Ga0209524_10162904	3300027521	Forest Soil	MMIDLKPRLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIAQELEALVEG
Ga0209734_10070782	3300027535	Forest Soil	MIDLKPRLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIARELEALVEG
Ga0209220_10938782	3300027587	Forest Soil	MIDPKPKLIAALGNAQEYLDLAISAQDRGEREFYKRIAELYLKIAQELDAMMGE
Ga0209217_10587472	3300027651	Forest Soil	MMIDPKPKLIAALGNAQEYIDLATSAQDRGEREFYERIAELYIKIAQELEVLVEG
Ga0209388_10929882	3300027655	Vadose Zone Soil	MIDPKPKLIAALDNAQEYLDLATSAQDRGEREFYKRIAELYLKIAQELEAMMGE
Ga0208981_11729491	3300027669	Forest Soil	IAALGNAQEYLDLATSAKDRGEREFYERIAVLYIKIAQELDALVEG
Ga0209588_10008073	3300027671	Vadose Zone Soil	MIDPKPRLIAALGNVQEYLDLAISVQDRSEREFYEPIAELYFKIAQELEAMMGG
Ga0209011_10156614	3300027678	Forest Soil	MIDPKPKLIAALGNAQEYLDLAISAQDRGERAFYKRIAELYLKIAQELDAMMGE
Ga0209328_100873081	3300027727	Forest Soil	MMIDPKPKLIAALGNAQEYIDLAISAQDRGEREFYERIAELYLKIAQDLEAMMGG
Ga0209068_101288782	3300027894	Watersheds	MIDPKPKLIAVLGNAQEYLDLAESTKDRDEREFYQRIAELYLKIAQELEAMMDG
Ga0209068_102176443	3300027894	Watersheds	MIDPKPRLIAVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0209526_100394963	3300028047	Forest Soil	MMIDLKPRLIAALGNAQEYLDLATSAKDRGERAFYERIAELYIKIARELEALVEE
Ga0209526_106362332	3300028047	Forest Soil	MMIDPKPKLIAALGNAQEYIDLATSAQDRGEREFYERIAELYIKIAQELEALVEG
Ga0307504_100342591	3300028792	Soil	MIDPKPKLIAVLGNVQEYLDLAASTKDRDEREFYQRIAELYLKIAQELEAMMGG
Ga0307504_102307611	3300028792	Soil	MIDPKPRLIAVLGNVQEYLDLASSTKDRGEREFYQRIAELYLKIAQELEAMMGG
Ga0307310_101984802	3300028824	Soil	MIDPKPKLIAVLGNVQEYLDLAASTKDRGEREFYQRIAELYLKIAQELEAMLSG
Ga0170824_1199151363	3300031231	Forest Soil	MMIDPKAKLVDVLGNAQEYLDLATKSTDRGERELYERIVALYLKIAQELETLIDK
Ga0170820_104224271	3300031446	Forest Soil	MMIDPKAKLVDVLGNAQEYLDLATKSTDRGERELYERIVALYLKIARPPQRLMIADL
Ga0170818_1143783793	3300031474	Forest Soil	MMIDPKAKLVDVLGNAQEYLDLATKSTDRGERELYERIVALHLKIAQELETLIDK
Ga0310686_1055897491	3300031708	Soil	MIDIRAKLVDALDHAQEYLDLAIKAQDRGEREFYERICELYMRIAQELRRRSTNRLCRPT