Basic Information | |
---|---|
Family ID | F072664 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 121 |
Average Sequence Length | 43 residues |
Representative Sequence | MTAKVLAALRSWKFQPAMRGDQPVEVTAILGFGIDTNDRF |
Number of Associated Samples | 107 |
Number of Associated Scaffolds | 121 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.83 % |
% of genes near scaffold ends (potentially truncated) | 97.52 % |
% of genes from short scaffolds (< 2000 bps) | 85.95 % |
Associated GOLD sequencing projects | 100 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.29 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (8.264 % of family members) |
Environment Ontology (ENVO) | Unclassified (18.182 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.719 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 14.71% β-sheet: 8.82% Coil/Unstructured: 76.47% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.29 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Watersheds Bog Forest Soil Peatland Freshwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Soil Arctic Peat Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Untreated Peat Soil Rice Paddy Soil Tropical Peatland Bog Forest Soil Permafrost Soil Permafrost Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Fen Palsa Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Rhizosphere Corn Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1038410872 | 3300000364 | Soil | ILAALRNWKFQPAMRNNQPVAVTAILGFGIDTNDRF* |
AP72_2010_repI_A10DRAFT_10105822 | 3300000651 | Forest Soil | PAQMTAKVVAALRNWKFQPAMRNSQPVEVTAILGFGIDTNDRF* |
JGIcombinedJ26739_1009850471 | 3300002245 | Forest Soil | KNPRVLEAGPAEFTVKILAALRSWKFQPATRGNQPVEVTAILGFGIDTNDRF* |
Ga0063454_1000075793 | 3300004081 | Soil | VLEAGSAQMTAKVLASLRAWKFQPAMRGKQPVEVTAILGFGIDTNDRF* |
Ga0063454_1004507021 | 3300004081 | Soil | PAAMTAKVLSALRSWKFQPAMRNDQPVDVTAILGFGVNTDDRF* |
Ga0062387_1000280364 | 3300004091 | Bog Forest Soil | LEAGPADMTAKVLIALRAWKFQPAILGNDPVEVTAILGFGVDTNDRF* |
Ga0062387_1002552102 | 3300004091 | Bog Forest Soil | NVRVLEPGPAEMTAKIIASLRGWKLQPAMRGDQPIEVTAILGFGIDTNDRF* |
Ga0058891_15686961 | 3300004104 | Forest Soil | VLEAGPAGMTAEVIAALHSWKFQPAMRGNQPVAVTAILGFGISTDDRF* |
Ga0062386_1001181803 | 3300004152 | Bog Forest Soil | MTGQVLSALRSWKFQPAMKGDQPVEVTAILGFGIDTNDRY* |
Ga0062595_1004962471 | 3300004479 | Soil | PGPANMTAKILSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF* |
Ga0066690_103802121 | 3300005177 | Soil | PAQMTAKVVAALRNWKFQPATRNNQPLEVTAIIGFGIDTSDRF* |
Ga0070709_103698761 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | TGKIVAALRGWKFQPAMRGNEPVEVTAILGFNIDTNDRF* |
Ga0070709_117081332 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | PGPAEVTAKVITALRSWKLQPVMRNNQPIQVDAILGFGIDTNDRF* |
Ga0070713_1009592971 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | GNLHVLEAGPATMTAKVVAALHSWKFQPAMKNNQPVEVNAILGFGINTNDRF* |
Ga0070707_1022736541 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | TDTTTKVLASLPNWKFSPALRGDQPVEVTVYLGFNIDTKDRF* |
Ga0070733_102237951 | 3300005541 | Surface Soil | VRVLEAGPASMTAKIVAALRNWKFQPAMRGDQPVEVTAILGFGIDTNDRF* |
Ga0070732_101934761 | 3300005542 | Surface Soil | NVRVLEAGPADMTAKVVAALNNWKFQPALRGDQPVEVTAILGFGINTNDRF* |
Ga0070732_108248951 | 3300005542 | Surface Soil | LEAGPAGMTAKVVAALRSWKFQPAMRNNQPLEVTAILGFGIDTNDRF* |
Ga0066695_103750982 | 3300005553 | Soil | KVLASLPNWKFSPALRGDQPVEVTVYLGFNIDTKDRF* |
Ga0068854_1021455922 | 3300005578 | Corn Rhizosphere | LSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF* |
Ga0070761_102601481 | 3300005591 | Soil | EMTAKLVAALRTWKFQPAMRGDQPVEVTAILGFNIDTNDRF* |
Ga0070762_100802101 | 3300005602 | Soil | TGSAEMTAKLVAALRTWKFQPAMRGDQPVEVTAILGFNIDTNDRF* |
Ga0070764_100509652 | 3300005712 | Soil | TAKLVAALRTWKFQPAMRGDQPVEVTAILGFNIDTNDRF* |
Ga0075289_10142021 | 3300005888 | Rice Paddy Soil | GPASMTAKVLAALRSWKFQPAMRNDQPVDVTAILGFGVNTDDRF* |
Ga0080026_100150392 | 3300005952 | Permafrost Soil | AGNLKNVRVLEPGPADVTAKIVAALRAWKFQPAMRGNEAVEVTAILGFNIDTNDRF* |
Ga0075026_1009805172 | 3300006057 | Watersheds | AVMTAKILADLRSWKFQPAMRSNQPVEVTAILGFGVDTNDRF* |
Ga0075017_1007823441 | 3300006059 | Watersheds | AKIIAALRGWKLQPAMRGDQPIEVTAILGFGIDTNDRF* |
Ga0075030_1009570432 | 3300006162 | Watersheds | AKVVAALNNWKFQPALRGDQPVEVTAILGFGINTNDRF* |
Ga0075030_1014102151 | 3300006162 | Watersheds | LEAGPAGMTAKVVAALRSWKFQPAMRNNQPVEVTAILGFGIDTNDRF* |
Ga0070716_1008579951 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | SALQSWKFQPAMRNDQPVGVTAILGFGVNTDDRF* |
Ga0075014_1001153581 | 3300006174 | Watersheds | GMTAKVVAALRSWKFQPAMRNNQPVEVTAILGFGIDTNDRF* |
Ga0070765_1021680891 | 3300006176 | Soil | TSKVLSALRSWKFQPALRGNQPVEVTAILGFVIDTNDRF* |
Ga0099830_108309802 | 3300009088 | Vadose Zone Soil | AALSKWKFRPALRGNQPVEVNAFLGFNIDTNDRF* |
Ga0116132_12114171 | 3300009646 | Peatland | ADMTAKVMLALRGWKFQPAMRGDQPVEVTAILGFGIDTNDRN* |
Ga0116223_105113352 | 3300009839 | Peatlands Soil | VVALRSWKFQPALRGGQPVEVSAILGFGINTDDRF* |
Ga0134062_102371633 | 3300010337 | Grasslands Soil | EPGPANMTAKVLSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF* |
Ga0074045_106478132 | 3300010341 | Bog Forest Soil | IAKVLAALGGWKFRPALRGGQPVEVTAILGFNIDTNDRY* |
Ga0126370_106122022 | 3300010358 | Tropical Forest Soil | VLEAGPATMTAKVVAALNSWKFQPALRGDQPVEVTAILGFGVDTNDRF* |
Ga0126370_108219181 | 3300010358 | Tropical Forest Soil | LTAKVLAALRTWKFQPAMRNNQPVEVTAILGFGIDTSDRF* |
Ga0134125_117285581 | 3300010371 | Terrestrial Soil | SGPAAMTAKVLSALRSWKFQPAMRNDQPVDVTAILGFGVNTDDRF* |
Ga0136449_1004634633 | 3300010379 | Peatlands Soil | GPADMTAKVMTALRSWKFQPAMRGTQPVEVTAILGFGIDTNDRF* |
Ga0136449_1030872831 | 3300010379 | Peatlands Soil | LAALRAWKFQPALRGSQPVDVIAILGFNIDTNDRF* |
Ga0126383_100648655 | 3300010398 | Tropical Forest Soil | VLEPGPATMTAKVVAALRSWKFQPAMRNSQPVEVTAILGFGIDTNDRF* |
Ga0134122_103110763 | 3300010400 | Terrestrial Soil | EPADAGMTSKVLAALPRWKFQPAMRDGKAVEVNAILGFNIDTNDRF* |
Ga0105246_113255832 | 3300011119 | Miscanthus Rhizosphere | VIAALPHWKFKPAMRVNQPVEVTAILGFNIDTNDRY* |
Ga0137407_115280482 | 3300012930 | Vadose Zone Soil | GMTAKILAAVRGWKFQPAMRGNQPVEVTAILGFGISTDDRF* |
Ga0157375_102060561 | 3300013308 | Miscanthus Rhizosphere | VMMAKVIAALPHWKFKPAMRVNQPVEVTAILGFNIDTNDRN* |
Ga0157376_119367662 | 3300014969 | Miscanthus Rhizosphere | MTAKVLAALNGRKFRAALRGDQPVEVTAILGFGIDTNDRF* |
Ga0137418_104792492 | 3300015241 | Vadose Zone Soil | MMAKVMAALPHWKFKPATRGAQPVEVTAILGFNVDTSDRY* |
Ga0132258_108370821 | 3300015371 | Arabidopsis Rhizosphere | AQMTAKVLAALRTWKFQPAMRNNRPVEVTAILGFGIDTNDHF* |
Ga0182036_116363421 | 3300016270 | Soil | LEPASATVTAKIVAALRAWKFQPAMKNNQPVEVTAILGFGIDTNDRF |
Ga0182037_104347452 | 3300016404 | Soil | KVLDPGPAAMTAKVLAALSSWKFQPAMRGTQSVELTAILGFGIDTNDRF |
Ga0187818_100912521 | 3300017823 | Freshwater Sediment | IRNVRVLEAGPAGMTAKVPSDLRSWKFQPAMRNNQPVEVTAILGFGINTDDRF |
Ga0187817_108056622 | 3300017955 | Freshwater Sediment | AKIVAALRSWKFQPAMRGNQPVEVTAILGFGIDTNDRF |
Ga0187817_110752831 | 3300017955 | Freshwater Sediment | AEMTAKILAALRTWKFQPAMRGNQPVEVTAILGFGVDTNDRF |
Ga0187778_110015991 | 3300017961 | Tropical Peatland | AKVLAALHSWKFQPALRGDQPVEVTAILGFNIDTNDRF |
Ga0187783_100994403 | 3300017970 | Tropical Peatland | GPATMTAKIRSALRAWKFQPAMRNGQPVEVNAILGFNITTDDVTNGSNLR |
Ga0187781_100306864 | 3300017972 | Tropical Peatland | LTNLRVLEAGPPGMTAKLLASLRTWKFEPAMRNKQPVEVTAILGFGIDTNDRF |
Ga0187823_102289242 | 3300017993 | Freshwater Sediment | RNVRVLEAGPAGMTAKVLAALRGWKFQPAMRGNQPVEVTAILGFGIDTNDRF |
Ga0187804_100067681 | 3300018006 | Freshwater Sediment | AMNSKVLAALSSWKFRPAFHGDQPVEVTAILGFDIDTR |
Ga0187810_101890352 | 3300018012 | Freshwater Sediment | GPADMTARVQTALHGWKFRPALRGDQPVEVTAILGFNIDTNDRF |
Ga0187784_108909841 | 3300018062 | Tropical Peatland | KVLAALRTWKFQPALRGSEPVEVTAILGFNIDTNDRF |
Ga0187772_101531242 | 3300018085 | Tropical Peatland | RVLEPGPADMTAKILAALRAWKFRPALREDQPIEVTAIIGFNIDTNDRF |
Ga0187772_105535691 | 3300018085 | Tropical Peatland | RAKILSALQSWKFQPAVRGNEPVEVDAILGFGVDTR |
Ga0187771_112858801 | 3300018088 | Tropical Peatland | MTAKVLAALRAWKFRPALRSDQPIEVTAILGFNIDTNDRF |
Ga0066662_100170797 | 3300018468 | Grasslands Soil | VLEPGPANMTAKVLSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF |
Ga0182025_11116172 | 3300019786 | Permafrost | PGPAEMTAKIVAALRSWKFQPAMRGNQPVAVTAILGFGIDTNDRF |
Ga0215015_102587461 | 3300021046 | Soil | VMAALESWKFRPATRGGQPVEVNALLGFGIDTNDRN |
Ga0210405_108338182 | 3300021171 | Soil | LSALRIWKFEPAMRGNQPVEVTAILGFGVDTNDRF |
Ga0210383_105519043 | 3300021407 | Soil | LPALRSWKFEPALRGTQPVDVTAILGFGIDTNDRF |
Ga0210409_105989591 | 3300021559 | Soil | TSGNLKNLRVLEAGPAGMTARILPALRAWKLEPAMRGGQPVEVTAILGFGINTDDRF |
Ga0213851_14385891 | 3300021860 | Watersheds | KNPRVLDPDPPQMTARVLAALRSWKFQPATRNNQPLEVTAIIGFGIDTSDHF |
Ga0208850_10681502 | 3300025457 | Arctic Peat Soil | DMTAKVLAALRSWKFQPAMRGTQPVEVTAILGFGIDTNDRF |
Ga0207679_109229472 | 3300025945 | Corn Rhizosphere | ANMTAKILSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF |
Ga0207703_104525543 | 3300026035 | Switchgrass Rhizosphere | QVLEPADAGMTSKVLAALPRWKFQPAMRDGKAVEVNAILGFNIDTNDRF |
Ga0209055_10958432 | 3300026309 | Soil | VVAALRNWKFQPATRNNQPLEVTAIIGFGIDTSDRF |
Ga0209474_103027743 | 3300026550 | Soil | AKVLSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF |
Ga0207776_10220362 | 3300027035 | Tropical Forest Soil | NMTAKVLAALRGWKFQPALRGDQPVEVTAIIGFGIDTNDRF |
Ga0209448_101615751 | 3300027783 | Bog Forest Soil | DMTAKVLIALRAWKFQPAILGNDPVEVTAILGFGVDTNDRF |
Ga0209039_104130282 | 3300027825 | Bog Forest Soil | LAALRSWKFQPAKRGDQPVEVTAILGFGIDTNDRF |
Ga0209580_102968472 | 3300027842 | Surface Soil | IIAALRSWKFQPATRNNQPVEVTAILGFGIDTNDRF |
Ga0209580_104530902 | 3300027842 | Surface Soil | EAGPATMTAKVLAALPSWKFQPAMRGNQPVEVTAILGFGIDTNDRF |
Ga0209580_105970262 | 3300027842 | Surface Soil | RVLEAGPAGMTAKVVAALRSWKFQPAMRNNQPLEVTAILGFGIDTNDRF |
Ga0209167_100539082 | 3300027867 | Surface Soil | NVRVLEAGPASMTAKIVAALRNWKFQPAMRGDQPVEVTAILGFGIDTNDRF |
Ga0209167_105744701 | 3300027867 | Surface Soil | GSATMTAKVLAALRTWKFQPAMRNNQPVEVTAILGFGIDTSDRF |
Ga0209579_100720703 | 3300027869 | Surface Soil | KGIRVLEAGPADMTAKVLAALRSWKFQPAMRDNQPVEVTAILGFGINTNDRF |
Ga0209275_100724611 | 3300027884 | Soil | SAEMTAKLVAALRTWKFQPAMRGDQPVEVTAILGFNIDTNDRF |
Ga0209698_105035761 | 3300027911 | Watersheds | DMTAKVLTALRSWKFQPAMRGSEPVAVTAILGFGIDTNDRF |
Ga0209698_109776961 | 3300027911 | Watersheds | LEPGPPDMTAKVLSAMLSWKFQPALRGDHPVEVTAILGFGIDTNDRF |
Ga0307504_101323681 | 3300028792 | Soil | PAVMTSKVLAALSKWKFRPALRGNQPVEVNAFLGFNIDTNDRF |
Ga0302227_100812601 | 3300028795 | Palsa | LEAGPATMTAKVLAALRNWKFQPALRGDQPVEVTAILGFGIDTNDRF |
Ga0222749_100090897 | 3300029636 | Soil | ESSGSEMTSKVMAALPGWKFRPAMRGDQPVEVNAILGFGIDTNDRF |
Ga0311347_107247001 | 3300029923 | Fen | AAETTSKILAALPNWKFRPAFRGNEPVEVTAILGFGIDTR |
Ga0311338_105943983 | 3300030007 | Palsa | MTAKILVALRSWKFQPAMRGAQPVQVTAILGFGIDTNDRF |
Ga0302176_100945693 | 3300030057 | Palsa | LKNVRVLEAGPATMTAKVLAALRNWKFQPALRGDQPVEVTAILGFGIDTNDRF |
Ga0311357_118418252 | 3300030524 | Palsa | AGMTAKVVASLRTWKFEPATRNKQPVEVTAILGFGIDTNDRF |
Ga0170834_1064110363 | 3300031057 | Forest Soil | KNIRVREPGPAGMTSKILAALRSWKFQPAMRGDQPVEITAILGFGIDTNDRF |
Ga0170824_1207841452 | 3300031231 | Forest Soil | AGMTAKVLAALHSWKFQPAMRGDQPVPVTAILGFGIDTNDRF |
Ga0302307_104262142 | 3300031233 | Palsa | LKNVRVLEAGPAGMTAKVVASLRTWKFEPATRNKQPVEVTAILGFGIDTNDRF |
Ga0170820_131663381 | 3300031446 | Forest Soil | LKGIRVLEAGPADMTAKVLAALGSWKFQPAMRANQPVEVTAILGFGINTNDRF |
Ga0170819_176322132 | 3300031469 | Forest Soil | PAGMTAKILAALPSWKFQPAMRGDQPVEITAILGFGIDTNDRF |
Ga0265314_106121742 | 3300031711 | Rhizosphere | VLAALRSWKFQPAMRGDQPVEVTAILGFGIDTNDRF |
Ga0307474_101158992 | 3300031718 | Hardwood Forest Soil | AEMTSKILSALRSWKFQPALRGNQPVEVTAILGFGIDTNDRF |
Ga0307475_108675541 | 3300031754 | Hardwood Forest Soil | GMTAKVLAALRSWKFQPAMRGTQPVEVTAILGFGIDTNDRF |
Ga0306926_107719432 | 3300031954 | Soil | QMTAKVLAALHTWKFQPAMRNNQPVEVTAILGFGIDTNDRF |
Ga0308176_117745253 | 3300031996 | Soil | GNVRVLEPGPANMTAKILSALRSWKFQPAMRNDQPVGVTAILGFGVNTDDRF |
Ga0306924_105392821 | 3300032076 | Soil | MTAKVLAALSSWKFQPAMRGTQSVELTAILGFGIDTNDRF |
Ga0307470_101670471 | 3300032174 | Hardwood Forest Soil | VRVREPGPAGMTAKILAALRSWKFQPAMRGDQPVEITAILGFGIDTNDRF |
Ga0307471_1020049302 | 3300032180 | Hardwood Forest Soil | MTSKVLAALRNWKFQPATRNNQPLEVTAIFGFGIDTSDHF |
Ga0335085_103676992 | 3300032770 | Soil | GPAEMTAKVIAALRSWKFQPATRGNQPVEVTAILGFGIDTNDRF |
Ga0335079_100691954 | 3300032783 | Soil | LEAGPADMTAKVVAALRSWKFQPAMRGDQPVEVSAILGFGIDTNDRF |
Ga0335078_101376903 | 3300032805 | Soil | VHVLEGPNDATARVVAALRSWKFQPALRGEQPVEVTAILGFAIDTNDRF |
Ga0335080_103430981 | 3300032828 | Soil | GPATMTAKVIAALRTWKFQPAMRNSQPVEVTAILGFGIDTNDRF |
Ga0335080_107671791 | 3300032828 | Soil | MTAKILAALPTWKFQPAMRNNQPVEVTAILGFSINTDDRF |
Ga0335070_103692711 | 3300032829 | Soil | LDASGNFRNLHVLEGPAEVTPRVAAALRAWKFQPAMRGDKPVEVTAILGFGIDTNDRF |
Ga0335081_109214361 | 3300032892 | Soil | AMTAKVMAALKNWKFQPALRSGQPVEVTAILGFGINTDDRL |
Ga0335083_101026122 | 3300032954 | Soil | LEAGSATMTAKVLAALRTWKFQPAMRNNQPVEVTAILGFGIDTSDRF |
Ga0335084_115704392 | 3300033004 | Soil | TAKVVAALRSWKFQPAMKNNQPVEVTAILGFGIDTNDRFWV |
Ga0335077_114681501 | 3300033158 | Soil | ATTAKILAALPTWKFQPAMRNNQPVEVTAILGFGINTDDRF |
Ga0370484_0072275_745_867 | 3300034125 | Untreated Peat Soil | MTAKVLAALRSWKFQPAMRGDQPVEVTAILGFGIDTNDRF |
Ga0370515_0235734_664_777 | 3300034163 | Untreated Peat Soil | KVLAALRNWKFQPALRGDQPVEVTAILGFGIDTNDRF |
⦗Top⦘ |