 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F072642 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 121 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MTMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLDAAMIHRDLKAS |
| Number of Associated Samples | 102 |
| Number of Associated Scaffolds | 121 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 97 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.51 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.174 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.967 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.752 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (66.116 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.33% β-sheet: 0.00% Coil/Unstructured: 42.67% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 121 Family Scaffolds |
|---|---|---|
| PF01361 | Tautomerase | 22.31 |
| PF13456 | RVT_3 | 14.88 |
| PF02591 | zf-RING_7 | 4.96 |
| PF02621 | VitK2_biosynth | 1.65 |
| PF00364 | Biotin_lipoyl | 0.83 |
| PF00930 | DPPIV_N | 0.83 |
| PF04055 | Radical_SAM | 0.83 |
| PF05163 | DinB | 0.83 |
| PF00144 | Beta-lactamase | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 121 Family Scaffolds |
|---|---|---|---|
| COG1942 | Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family | Secondary metabolites biosynthesis, transport and catabolism [Q] | 22.31 |
| COG1579 | Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain | General function prediction only [R] | 4.96 |
| COG1427 | Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway) | Coenzyme transport and metabolism [H] | 1.65 |
| COG0823 | Periplasmic component TolB of the Tol biopolymer transport system | Intracellular trafficking, secretion, and vesicular transport [U] | 0.83 |
| COG1506 | Dipeptidyl aminopeptidase/acylaminoacyl peptidase | Amino acid transport and metabolism [E] | 0.83 |
| COG1680 | CubicO group peptidase, beta-lactamase class C family | Defense mechanisms [V] | 0.83 |
| COG1686 | D-alanyl-D-alanine carboxypeptidase | Cell wall/membrane/envelope biogenesis [M] | 0.83 |
| COG2318 | Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB) | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.83 |
| COG2367 | Beta-lactamase class A | Defense mechanisms [V] | 0.83 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.17 % |
| All Organisms | root | All Organisms | 0.83 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300019788|Ga0182028_1542990 | All Organisms → cellular organisms → Bacteria | 5162 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 23.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 16.53% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 8.26% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.96% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 4.96% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.96% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 4.96% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.31% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.31% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.31% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.31% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.31% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.65% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.65% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.65% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 1.65% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.65% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.65% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.83% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.83% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.83% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.83% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 0.83% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459005 | Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm | Environmental | Open in IMG/M |
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006354 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009522 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010856 | Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300016702 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017933 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300017937 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300019788 | Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022720 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022722 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300024331 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 | Environmental | Open in IMG/M |
| 3300026868 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes) | Environmental | Open in IMG/M |
| 3300026887 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes) | Environmental | Open in IMG/M |
| 3300026990 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes) | Environmental | Open in IMG/M |
| 3300027069 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes) | Environmental | Open in IMG/M |
| 3300027313 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) | Environmental | Open in IMG/M |
| 3300027516 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes) | Environmental | Open in IMG/M |
| 3300027521 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027660 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027680 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes) | Environmental | Open in IMG/M |
| 3300027703 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) | Environmental | Open in IMG/M |
| 3300027842 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028146 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 | Environmental | Open in IMG/M |
| 3300028646 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031769 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031846 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033561 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| E41_11019940 | 2170459005 | Grass Soil | LVSGGFGFILMFAMIARVVGEPETLVASAFGILPLAVGLGYFVDAALIHRDLKAS |
| JGI12270J11330_101888172 | 3300000567 | Peatlands Soil | RAGILLVTGGLGLMIMFTVIARVTSEPETLVAAAFGILPLAVGIGYFLDAALIRRDLKAS |
| JGIcombinedJ26739_1000736171 | 3300002245 | Forest Soil | PQTLVASAFGILPLAVGLGYFLDAALIRRDLKAS* |
| Ga0062384_1012324041 | 3300004082 | Bog Forest Soil | ILLVTGGLGFMIMFAVIARVVDEPRTMVAGAFGILPLAVGIGYFLDAALIHRDLKTT* |
| Ga0062384_1012477311 | 3300004082 | Bog Forest Soil | QIEREPDTWVAAVFGIIPLAIGIGYFLDATLIRRDLKAVS* |
| Ga0062387_1008034402 | 3300004091 | Bog Forest Soil | RFSGEPETMVAGSFGVLPLAIGLGYFVDAALIRRDLKAA* |
| Ga0062389_1012131232 | 3300004092 | Bog Forest Soil | IARFSGEPETMVAGSFGVLPLAIGLGYFVDAALIRRDLKAA* |
| Ga0062386_1001780773 | 3300004152 | Bog Forest Soil | GVGFILMFAMISRAVNEPETMAAAAFGILPLAVGIGYFLDAALIRRDLRAS* |
| Ga0062386_1002272301 | 3300004152 | Bog Forest Soil | VGFMTMFAVIARVVGEPQTLVAAAFGILPLAVGVGYFLDAAMIRRDLKAS* |
| Ga0066388_1003195521 | 3300005332 | Tropical Forest Soil | MFAAIARIVNEPETLVAAAFGILPLAVGIGYFLDAALIHRDLKIS* |
| Ga0066388_1008582463 | 3300005332 | Tropical Forest Soil | IAKVVNEPETLAAAAFGILPLAVGIGYFVDAALLHRDWKAS* |
| Ga0070714_1006906522 | 3300005435 | Agricultural Soil | GLGFFLMFALIARFSGEPETMVAASFGVLPLAIGLGYFVDAAMIHRDIAKAS* |
| Ga0070697_1006699512 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | SAGLGFFLMFALIARFSGEPETMVAASFGVLPLAIGLGYFVDAAMIHRDIAKAS* |
| Ga0066903_1051022521 | 3300005764 | Tropical Forest Soil | RAGILLVSGGLGFMLMFGMIAKAVNEPETLAAAAFGILPLAVGIGYFVDAALLHRDLKAS |
| Ga0070766_102553873 | 3300005921 | Soil | RVVGEPQTLVASAFGILPLAIGLGYFVDAALIRRDLKAS* |
| Ga0075029_1000800554 | 3300006052 | Watersheds | LMFGIIARVVGEPETLVVSAFGILPLAVGIGYFVDAAMVRRDLKTS* |
| Ga0075017_1011195162 | 3300006059 | Watersheds | FALIARIVNEPETMVAAAFGILPLAVGIGYFLDAALIHRDLKAT* |
| Ga0075014_1001616931 | 3300006174 | Watersheds | GFMVMFAAIARIVQEPETLAAAAVGILPLAVGIGYFLDAALIRRDLKTT* |
| Ga0070712_1000731131 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | IARFSGEPETMVAASFGVLPLAIGLGYFVDAAMIHRDIAKAS* |
| Ga0075021_105159151 | 3300006354 | Watersheds | PETLVASAFGILPLAVGLGYFVDAALIRRDLKAS* |
| Ga0099828_111769591 | 3300009089 | Vadose Zone Soil | PETWVAASLGIIPLAVGLGYFLDWTLIRRDLHPSS* |
| Ga0099828_118419222 | 3300009089 | Vadose Zone Soil | IVMFAMIARVLGEPETMVGSAIGVLPLAVGLGYFADAALIRRDLKAS* |
| Ga0116218_15083982 | 3300009522 | Peatlands Soil | GFMTMFAVIARVVGEHETLVAAAFGILPLAVGIGYFLDAAMIHRDLKAS* |
| Ga0116217_103343782 | 3300009700 | Peatlands Soil | RAGILLVTGGLGFMTMFAVIARVVGEPQTLAAAAVGILPLAVGIGYFLDAAMIHRDLKAS |
| Ga0126373_115260381 | 3300010048 | Tropical Forest Soil | GFFAMFAMIARAVGEPETMAAAAFGILPLAVGLGYFVDAALIRRDLRAS* |
| Ga0126376_102595114 | 3300010359 | Tropical Forest Soil | LVSAGIGFILMFAMIARVVGEPETLVASAFGILPLAVGLGYFVDAALIRRDFKAS* |
| Ga0126378_119227521 | 3300010361 | Tropical Forest Soil | MIARVVGEPQTLVASAFSILPLAVGLGYFVDAALIRRDLKAS* |
| Ga0136449_1017330692 | 3300010379 | Peatlands Soil | TGGLGFMTMFAVIARVVGEPQTLAAAAVGILPLAVGIGYFVDAAMIHRDLKAS* |
| Ga0126358_10374722 | 3300010856 | Boreal Forest Soil | VGFIVMFAMIARVVGEPETLVASAFGILPLAIGLGYFVDAALIRRDLKAS* |
| Ga0137404_102514581 | 3300012929 | Vadose Zone Soil | MFAMIARVVGEPQTLVGSAFGILPLAVGLGYFVDAALIHRDLKAS* |
| Ga0126369_100046611 | 3300012971 | Tropical Forest Soil | RSRRAGILLVSGGLGFFAMFAMIARAVGEPETMAAAAFGILPLAVGLGYFVDAALIRRDLRAS* |
| Ga0137420_13226413 | 3300015054 | Vadose Zone Soil | MIARVVGEPATLVASAFGILPLAIGLGYFVDAALIRRDLKAS* |
| Ga0182036_106615432 | 3300016270 | Soil | VIARVVEEPHTLVAAAFGILPLAVGIGYFLDAALIHKDLRVS |
| Ga0182041_114550593 | 3300016294 | Soil | EPQTMAAAAFGILPLAVGLGYFVDAALIRRDLRAS |
| Ga0182035_107698941 | 3300016341 | Soil | RVVGERETLVAAAFGILPLAIGIGYFLDAALIHRELKVS |
| Ga0182032_102173051 | 3300016357 | Soil | IVQEPHTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0182040_106642531 | 3300016387 | Soil | FMAMFAVIAKVVGEPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0182040_117697121 | 3300016387 | Soil | AGILLVSGGLGFMAMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0182037_105624861 | 3300016404 | Soil | LMFSLIARIVQEPHTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0182037_106236081 | 3300016404 | Soil | EPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0182037_110150651 | 3300016404 | Soil | RSRRAGILLVSGGLGFFVMFAVIARAVGEPQTMAAAAFGILPLAVGLGYFVDAALIRRDLRAS |
| Ga0182038_104179941 | 3300016445 | Soil | VVGEPETLVAAAFGILPLAIGIGYFLDAALIHRELKAS |
| Ga0181511_11391941 | 3300016702 | Peatland | LGFMIMFAAIARIVDEPQTLVAASLGILPLAVGIGYFLDAALIHRDMKAT |
| Ga0187802_100259514 | 3300017822 | Freshwater Sediment | SGGLGFMIMFAVIARVVNEPDTLVASAVGILPLAVGIGYFLDAALIHRDIKAS |
| Ga0187801_101111801 | 3300017933 | Freshwater Sediment | QFARSRRAGILLVSGGVGFIVMFALIARIVGEPETLAAAAVGILPLAVGIGYFLDAALIHRDIKAS |
| Ga0187848_104415912 | 3300017935 | Peatland | LVTGGLGFMTMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLNAAMIRRDLKAS |
| Ga0187809_104343433 | 3300017937 | Freshwater Sediment | GFMIMFAVIARVVNEPDTLVASAVGILPLAVGIGYFLDAALIHRDIKAS |
| Ga0187819_100734941 | 3300017943 | Freshwater Sediment | EPQTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0187819_101955472 | 3300017943 | Freshwater Sediment | SRRAGILLVSGGLGFMIMFAVIARVVNEPDTLVASAVGILPLAVGIGYFLDAALIHRDIKAS |
| Ga0187779_103129302 | 3300017959 | Tropical Peatland | ARVVEEPHTLVAAAFGILPLALAIGYFLDAAMIHRDIKAS |
| Ga0187781_107158271 | 3300017972 | Tropical Peatland | MFAAIAKIVNEPQTLVAAAFGILPLAVGIGYFVDAALIHRDLKAS |
| Ga0187777_102545602 | 3300017974 | Tropical Peatland | GLGFMIMFAVIARVVNEPDTLVASAVGILPLAVGIGYFLDAALIHRDIKAS |
| Ga0187804_102120712 | 3300018006 | Freshwater Sediment | VSGGVGFIVMFALIARIVGEPETLAAAAVGILPLAVGIGYFLDAALIHRDMKTT |
| Ga0187772_109488562 | 3300018085 | Tropical Peatland | MLMFAVIARVVEEPHTLVAAAFGILPIAVGIGHFVDAALIHRDMKTA |
| Ga0187771_100422775 | 3300018088 | Tropical Peatland | FMIMFAVIARVVEEPHTMVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0187771_104648822 | 3300018088 | Tropical Peatland | GFMTMFAVIARVVGEPETLAAAAFGILPLAVGIGYFVDATLIHRDLTAS |
| Ga0182028_12436533 | 3300019788 | Fen | MTMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLDAAMIHRDLKAS |
| Ga0182028_15429904 | 3300019788 | Fen | MTMFAVIARVVGEPGDSGCGAFGILPLAVGNRILLDAAMIHRDLKAS |
| Ga0210399_104583081 | 3300020581 | Soil | AGILLVSGGVGLIVMFAMISRLLGEPETMVGSAIGVLPLAVGLGYFVDAALIHRDLKAS |
| Ga0210406_103485511 | 3300021168 | Soil | RSRRAGILLVSGGVGFILMFAMIARVVGEPQTLVGSAFGILPLAVGLGYFVDAALIHRDLKAS |
| Ga0210406_104446413 | 3300021168 | Soil | FILMFAMIARVVGEPQTLVASAFGILPLAVGLGYFVDAALIRRDLKAS |
| Ga0210406_104653511 | 3300021168 | Soil | LIARFSGEPQTMVAASFGVLPLAIGLGYFVDAAMIHRDIAKAS |
| Ga0210400_106998912 | 3300021170 | Soil | MLVMFAMIARLLGEPETMVGSAIGVLPLAVGLGYFVDAALIHRDLKAS |
| Ga0210393_110379741 | 3300021401 | Soil | RIVQEPETMVAAALGILPLAVGIGYFVDAALIHRDLKAT |
| Ga0210387_112340861 | 3300021405 | Soil | EPETMVAGSFGVLPLAIGLGYFVDAALIRRDLKTA |
| Ga0210394_101271704 | 3300021420 | Soil | LLVSGGVGMIVMFAMIARLLGEPETMVGSAIGVLPLAVGLGYFVDAALIHRDLKAS |
| Ga0210392_100225331 | 3300021475 | Soil | ALIARFSGEPETMVAASFGVLPLAIGLGYFVDAAMIHRDIAKAS |
| Ga0210392_114472371 | 3300021475 | Soil | SRLLGEPETMVGSAIGVLPLAVGLGYFVDAVLIRRDLKAS |
| Ga0210398_101112581 | 3300021477 | Soil | LVSGGLGFMLMFAVIARVVAEPETMAAAAFGILPLAVGIGYFVDATLIHRDIKAT |
| Ga0210398_101852281 | 3300021477 | Soil | RAGVLLVSGGVGFILMFAMIARVLGEPETLVASAFGILPLAVGMGYFLDAALIRRDLKAS |
| Ga0210410_106207943 | 3300021479 | Soil | GLGFIVMFAMIARVLGEPETLVASAFGVLPLAIGLGYFVDAALIRRDLKAS |
| Ga0210409_117079393 | 3300021559 | Soil | RVVGEPETLVASAFGILPLAVGLGYFVDAALIHRDLKAS |
| Ga0242672_11261761 | 3300022720 | Soil | SGGVGMIVMFAMIARLLGEPETMVGSAIGVLPLAVGLGYFVDAALIHRDLKAS |
| Ga0242657_12037891 | 3300022722 | Soil | LGEPETLVASAFGVLPLAIGLGYFVDAALIRRDLKAS |
| Ga0137417_14623556 | 3300024330 | Vadose Zone Soil | MIARVVGEPQTLVGSAFGILPLAVGLGYFVDAALIHRDLKAS |
| Ga0247668_10192251 | 3300024331 | Soil | GGGFIVMFAMIARVLGEPETLVASAFGILPLAIGLGYFVDAALIHRDLKAS |
| Ga0207818_10203081 | 3300026868 | Tropical Forest Soil | GFMTMFAVIARVVEEPHTLVAAAFGILPVAVGIGYFLDAALIHKDLKAS |
| Ga0207805_10314681 | 3300026887 | Tropical Forest Soil | VIARVVEEPHTLVAAAFGILPVAVGIGYFLDAALIHKDLKAS |
| Ga0207824_10367341 | 3300026990 | Tropical Forest Soil | VVEEPQTLVAAAFGILPLAIGIGYFLDAALIHKDLKAS |
| Ga0208859_10478421 | 3300027069 | Forest Soil | FILMFAMIARVLGEPETLVASAFGILPLAVGMGYFLDAALIRRDLKAS |
| Ga0207780_10313902 | 3300027313 | Tropical Forest Soil | VVGERETLVAAAFGILPLAIGIGYFLDAALIHRELKVS |
| Ga0207761_10436541 | 3300027516 | Tropical Forest Soil | HFAQEPQTMVAAAFGILPLVVGLGYFVDATLIQRDMKAS |
| Ga0209524_11381211 | 3300027521 | Forest Soil | SGGLGFILMFALIARFSGEPETMVAGSFGVLPLAIGLGYFVDAALTRRDLKTA |
| Ga0209736_11226673 | 3300027660 | Forest Soil | EPQTLVASAFGILPLAVGLGYFVDAALIRRDLKAS |
| Ga0207826_10347742 | 3300027680 | Tropical Forest Soil | IARVVEEPHTLVAAAFGILPVAVGIGYFLDAALIHKDLKAS |
| Ga0207862_12383742 | 3300027703 | Tropical Forest Soil | MFAVIARVVEEPHTLVAAAFGILPVAVGIGYFLDAALIHKDLKAS |
| Ga0209580_103299861 | 3300027842 | Surface Soil | VGFILMFAMIARVVGEPQTLVASAFGILPLAVGLGYFVDAALIRRDLKAS |
| Ga0209701_104293991 | 3300027862 | Vadose Zone Soil | RSRRAGILLVSGGAGFILMFAMIARVVGEPETLVASAFGILPLAVGLGYFVDAALIHRDLKAS |
| Ga0247682_11179252 | 3300028146 | Soil | FIVMFAMIARVLGEPETLVASAFGILPLAIGLGYFVDAALIHRDLKAS |
| Ga0302159_100967712 | 3300028646 | Fen | VEPDAWVATYFGLIPLAIGLGYFVDFALIRRDLHTS |
| Ga0308309_105521912 | 3300028906 | Soil | AVNEPETMAAAALGVFPLAVGIGYFLDAMLIRRDLKAS |
| Ga0170834_1059393823 | 3300031057 | Forest Soil | RVVGEPETLVASAFGILPLAIGLGYFVDAALIRRDLKAS |
| Ga0170824_1035186023 | 3300031231 | Forest Soil | VVGEPETLVGSAIGVLPLAVGWGYFVDAALIRRDLKAT |
| Ga0318541_103001262 | 3300031545 | Soil | VQEPHTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0318538_105416863 | 3300031546 | Soil | VGEPQTMAAAAFGILPLAVGLGYFVDAALIRRDLRAS |
| Ga0306917_103307521 | 3300031719 | Soil | GILLVSGGLGFFVMFAVIARAVGEPQTMAAAAFGILPLAVGLGYFVDAALIRRDLRAS |
| Ga0307469_109038983 | 3300031720 | Hardwood Forest Soil | FARSRRAGILLVSGGVGFILMFAMIARVVGEPQTLVASAFGILPLAIGMGYFVDAALIRRDLKAS |
| Ga0318493_108131591 | 3300031723 | Soil | ILLVSGGLGFFVMFAVIARAVGEPQTMAAAAFGILPLAVGLGYFVDAALIRRDLRAS |
| Ga0318492_105222441 | 3300031748 | Soil | VVGEPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0318526_101763902 | 3300031769 | Soil | ILLVCGGLGFMAMFAVIAKVVGEPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0318546_104549641 | 3300031771 | Soil | TGILLVCGGLGFMAMFAVIAKVVGEPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0310917_101553261 | 3300031833 | Soil | FMLMFSLIARIVQEPHTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0318512_106462342 | 3300031846 | Soil | FMAMFAVIAKVVGERETLVAAAFGILPLAIGIGYFLDAALIHRELKAS |
| Ga0306919_107404411 | 3300031879 | Soil | GFMAMFAVIAKVVGEPQALAAAAFGILPLAVGIGYFLDAALIHRELKAS |
| Ga0306923_104446083 | 3300031910 | Soil | FAVIAKVVGEPETLVAAAFGILPLAIGIGYFLDAALIHRELKAS |
| Ga0306923_112357782 | 3300031910 | Soil | VNEPETLAAAAFGILPLAVGIGYFVDAALLHRDLKAS |
| Ga0306923_115480141 | 3300031910 | Soil | LLVCGGFGFMTMFAVIARVVEEPHTLVAAAFGILPLAVGIGYFLDAALIHKDLRVS |
| Ga0306921_127500611 | 3300031912 | Soil | KVVGEPETLVAAAFGILPVAIGIGYFLDAALIHRELKAS |
| Ga0310910_107057512 | 3300031946 | Soil | GGLGFMAMFAVIAKVVGEPETLVAAAFGILPVAIGIGYFLDAALIHRELKAS |
| Ga0310910_112298822 | 3300031946 | Soil | GILLVSGGLGFMLMFGMIAKVVNEPETLAAAAFGILPLAVGIGYFVDAALLHRDLKAS |
| Ga0318533_106969822 | 3300032059 | Soil | MFSLIARIVQEPHTLVAAAFGILPLAVGIGYFLDAALIHRDLKAS |
| Ga0306924_114629921 | 3300032076 | Soil | RRAGILLVSGGLGFMVMFAVIARVVNEPETLVASAVGILPLAVGIGYFLDAALIHRDLKT |
| Ga0306924_120427052 | 3300032076 | Soil | FMAMFAVIARVVGERETLVAAAFGILPLAIGIGYFLDAALIHRELKVS |
| Ga0307470_101623541 | 3300032174 | Hardwood Forest Soil | LVSGGAGFILMFAMIARVVGEPETLVGSAFGILPLAVGLGYFVDAALIRRDLKAS |
| Ga0306920_1001683931 | 3300032261 | Soil | VMEEPQTLVAAAFGILPLAIGIGYFLDAALIHKDLKAS |
| Ga0306920_1031689931 | 3300032261 | Soil | LGFMAMFAVIAKVVGEPETLVAAAFGILPLAIGIGYFLDAALIHRELKAS |
| Ga0335079_122265601 | 3300032783 | Soil | AAIARIVSEPETLVAAAFGILPLAVGIGYFLDAALIHRDLKVS |
| Ga0335069_107913413 | 3300032893 | Soil | FAMIARAVCEPETMAAAAFGILPLAVGLGYFVDAALIRRDLKAS |
| Ga0335076_117473222 | 3300032955 | Soil | TFALIARFSGEPQTLVAASFGILPLAIGLGYFVDAAMIHRDIAKAS |
| Ga0335077_102427701 | 3300033158 | Soil | VSGGLGFFLTFALIARFSGEPQTLVAASFGILPLAIGLGYFVDAAMIHRDIAKAS |
| Ga0371490_10122571 | 3300033561 | Peat Soil | ITMFAVIARVVGEPETLAAAAFGILPLAVGIGYFLDAAMIRRDLKAS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |