Metagenome Family F072639

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072639
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	79 residues
Representative Sequence	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVAAVAA
Number of Associated Samples	87
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.17 %
% of genes near scaffold ends (potentially truncated)	28.10 %
% of genes from short scaffolds (< 2000 bps)	86.78 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.248 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (44.628 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (50.413 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.96% β-sheet: 0.00% Coil/Unstructured: 37.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
a.118.17.0: automated matches	d6i2mb_	6i2m	0.70021
a.7.11.1: Alpha-hemoglobin stabilizing protein AHSP	d1z8ua_	1z8u	0.69554
a.100.1.6: Glycerol-3-phosphate dehydrogenase	d1txga1	1txg	0.68205
a.264.1.1: Duffy binding domain	d1zroa1	1zro	0.68155
a.100.1.6: Glycerol-3-phosphate dehydrogenase	d1evya1	1evy	0.68064

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00536	SAM_1	10.74
PF13191	AAA_16	1.65
PF01436	NHL	1.65
PF07647	SAM_2	1.65
PF00216	Bac_DNA_binding	1.65
PF01425	Amidase	0.83
PF13557	Phenol_MetA_deg	0.83
PF07311	Dodecin	0.83
PF02074	Peptidase_M32	0.83
PF05128	DUF697	0.83
PF09140	MipZ	0.83
PF04964	Flp_Fap	0.83
PF12686	DUF3800	0.83
PF13701	DDE_Tnp_1_4	0.83
PF00011	HSP20	0.83
PF06411	HdeA	0.83
PF00583	Acetyltransf_1	0.83
PF13847	Methyltransf_31	0.83
PF02604	PhdYeFM_antitox	0.83
PF08238	Sel1	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.65
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.83
COG2317	Zn-dependent carboxypeptidase, M32 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.83
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	0.83
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.83
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
All Organisms	root	All Organisms	29.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
cellular organisms	root	All Organisms → cellular organisms	29.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.53 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.26 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.83 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Mesorhizobium sp. NZP2298	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NZP2298	0.83 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10164332	Not Available	810	Open in IMG/M
3300004080\|Ga0062385_10820788	Not Available	610	Open in IMG/M
3300004082\|Ga0062384_100259027	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300004082\|Ga0062384_100558400	Not Available	768	Open in IMG/M
3300004082\|Ga0062384_100960110	Not Available	609	Open in IMG/M
3300004092\|Ga0062389_101890391	Not Available	775	Open in IMG/M
3300004635\|Ga0062388_101239157	Not Available	740	Open in IMG/M
3300004635\|Ga0062388_102634867	Not Available	529	Open in IMG/M
3300005764\|Ga0066903_103843157	Not Available	807	Open in IMG/M
3300006050\|Ga0075028_100795764	Not Available	576	Open in IMG/M
3300006057\|Ga0075026_100713833	Not Available	600	Open in IMG/M
3300006059\|Ga0075017_100484576	Not Available	936	Open in IMG/M
3300006059\|Ga0075017_100846999	Not Available	708	Open in IMG/M
3300006059\|Ga0075017_101199587	Not Available	594	Open in IMG/M
3300006086\|Ga0075019_10140654	Not Available	1406	Open in IMG/M
3300006102\|Ga0075015_100345785	Not Available	828	Open in IMG/M
3300006102\|Ga0075015_101030598	Not Available	505	Open in IMG/M
3300006162\|Ga0075030_101069564	Not Available	635	Open in IMG/M
3300006174\|Ga0075014_100266278	Not Available	891	Open in IMG/M
3300006893\|Ga0073928_10132076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2040	Open in IMG/M
3300006893\|Ga0073928_10155266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1841	Open in IMG/M
3300006893\|Ga0073928_10203824	All Organisms → cellular organisms → Bacteria → Proteobacteria	1547	Open in IMG/M
3300007982\|Ga0102924_1340953	Not Available	582	Open in IMG/M
3300009519\|Ga0116108_1028414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1862	Open in IMG/M
3300009521\|Ga0116222_1203217	Not Available	853	Open in IMG/M
3300009522\|Ga0116218_1544559	Not Available	517	Open in IMG/M
3300009525\|Ga0116220_10467103	Not Available	570	Open in IMG/M
3300009552\|Ga0116138_1107328	Not Available	774	Open in IMG/M
3300009632\|Ga0116102_1037624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1579	Open in IMG/M
3300009636\|Ga0116112_1209945	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300009636\|Ga0116112_1237901	Not Available	502	Open in IMG/M
3300009637\|Ga0116118_1279652	Not Available	507	Open in IMG/M
3300009640\|Ga0116126_1144334	Not Available	804	Open in IMG/M
3300009645\|Ga0116106_1053786	Not Available	1340	Open in IMG/M
3300009762\|Ga0116130_1174747	Not Available	679	Open in IMG/M
3300009764\|Ga0116134_1225515	Not Available	649	Open in IMG/M
3300009824\|Ga0116219_10493498	Not Available	677	Open in IMG/M
3300009839\|Ga0116223_10609250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300010379\|Ga0136449_100049672	All Organisms → cellular organisms → Bacteria	9463	Open in IMG/M
3300010379\|Ga0136449_100173159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4172	Open in IMG/M
3300010379\|Ga0136449_101120306	Not Available	1250	Open in IMG/M
3300010379\|Ga0136449_102202173	Not Available	804	Open in IMG/M
3300010379\|Ga0136449_103595500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	588	Open in IMG/M
3300010379\|Ga0136449_104124857	Not Available	540	Open in IMG/M
3300014156\|Ga0181518_10425704	Not Available	638	Open in IMG/M
3300014158\|Ga0181521_10382086	Not Available	698	Open in IMG/M
3300014158\|Ga0181521_10482651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	596	Open in IMG/M
3300014159\|Ga0181530_10206341	Not Available	1078	Open in IMG/M
3300014164\|Ga0181532_10153091	Not Available	1385	Open in IMG/M
3300014164\|Ga0181532_10170821	Not Available	1292	Open in IMG/M
3300014489\|Ga0182018_10354335	Not Available	790	Open in IMG/M
3300014489\|Ga0182018_10705481	Not Available	526	Open in IMG/M
3300017925\|Ga0187856_1035907	Not Available	2299	Open in IMG/M
3300017928\|Ga0187806_1107163	Not Available	896	Open in IMG/M
3300017931\|Ga0187877_1049193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1936	Open in IMG/M
3300017938\|Ga0187854_10147958	Not Available	1068	Open in IMG/M
3300017943\|Ga0187819_10335082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	876	Open in IMG/M
3300017946\|Ga0187879_10019608	All Organisms → cellular organisms → Bacteria → Proteobacteria	4183	Open in IMG/M
3300017946\|Ga0187879_10127901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1445	Open in IMG/M
3300017946\|Ga0187879_10182696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1179	Open in IMG/M
3300017955\|Ga0187817_10339341	Not Available	958	Open in IMG/M
3300017970\|Ga0187783_10244950	Not Available	1311	Open in IMG/M
3300017988\|Ga0181520_11086434	Not Available	526	Open in IMG/M
3300017995\|Ga0187816_10513873	Not Available	540	Open in IMG/M
3300017996\|Ga0187891_1089128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1188	Open in IMG/M
3300018002\|Ga0187868_1287542	Not Available	545	Open in IMG/M
3300018006\|Ga0187804_10450759	Not Available	574	Open in IMG/M
3300018007\|Ga0187805_10168880	Not Available	996	Open in IMG/M
3300018009\|Ga0187884_10293704	Not Available	657	Open in IMG/M
3300018014\|Ga0187860_1150681	Not Available	996	Open in IMG/M
3300018016\|Ga0187880_1078422	Not Available	1678	Open in IMG/M
3300018017\|Ga0187872_10032575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2898	Open in IMG/M
3300018023\|Ga0187889_10080637	Not Available	1651	Open in IMG/M
3300018024\|Ga0187881_10094946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1356	Open in IMG/M
3300018025\|Ga0187885_10038151	All Organisms → cellular organisms → Bacteria	2540	Open in IMG/M
3300018033\|Ga0187867_10290976	Not Available	915	Open in IMG/M
3300018037\|Ga0187883_10030325	All Organisms → cellular organisms → Bacteria → Proteobacteria	2937	Open in IMG/M
3300018037\|Ga0187883_10199712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1025	Open in IMG/M
3300018040\|Ga0187862_10011657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7356	Open in IMG/M
3300018042\|Ga0187871_10276973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	929	Open in IMG/M
3300018042\|Ga0187871_10469766	Not Available	696	Open in IMG/M
3300018057\|Ga0187858_10531994	Not Available	715	Open in IMG/M
3300020582\|Ga0210395_10236061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
3300020582\|Ga0210395_10776246	Not Available	715	Open in IMG/M
3300020583\|Ga0210401_10487817	Not Available	1095	Open in IMG/M
3300020583\|Ga0210401_10663510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	904	Open in IMG/M
3300021474\|Ga0210390_10151973	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300021474\|Ga0210390_11644187	Not Available	504	Open in IMG/M
3300021477\|Ga0210398_10089502	Not Available	2500	Open in IMG/M
3300022557\|Ga0212123_10251470	Not Available	1268	Open in IMG/M
3300022557\|Ga0212123_10318495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300025320\|Ga0209171_10457112	Not Available	642	Open in IMG/M
3300025439\|Ga0208323_1029035	Not Available	1115	Open in IMG/M
3300025460\|Ga0208562_1090986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	604	Open in IMG/M
3300025498\|Ga0208819_1115306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
3300027641\|Ga0208827_1129071	Not Available	720	Open in IMG/M
3300027698\|Ga0209446_1143172	Not Available	617	Open in IMG/M
3300027737\|Ga0209038_10190832	Not Available	620	Open in IMG/M
3300027767\|Ga0209655_10172778	Not Available	713	Open in IMG/M
3300027768\|Ga0209772_10183848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. NZP2298	660	Open in IMG/M
3300027854\|Ga0209517_10264943	Not Available	1021	Open in IMG/M
3300027854\|Ga0209517_10577393	Not Available	599	Open in IMG/M
3300027894\|Ga0209068_10180537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1154	Open in IMG/M
3300027898\|Ga0209067_10274196	Not Available	922	Open in IMG/M
3300028015\|Ga0265353_1006768	Not Available	988	Open in IMG/M
3300030007\|Ga0311338_11891869	Not Available	534	Open in IMG/M
3300030399\|Ga0311353_10427994	Not Available	1186	Open in IMG/M
3300030524\|Ga0311357_11209826	Not Available	653	Open in IMG/M
3300030617\|Ga0311356_11027354	Not Available	768	Open in IMG/M
3300031708\|Ga0310686_100106395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1983	Open in IMG/M
3300031708\|Ga0310686_108423860	Not Available	4055	Open in IMG/M
3300031708\|Ga0310686_114577403	Not Available	4623	Open in IMG/M
3300031708\|Ga0310686_116529866	Not Available	767	Open in IMG/M
3300031708\|Ga0310686_117843157	Not Available	677	Open in IMG/M
3300031708\|Ga0310686_118216923	Not Available	717	Open in IMG/M
3300032160\|Ga0311301_10079229	All Organisms → cellular organisms → Bacteria	6768	Open in IMG/M
3300032160\|Ga0311301_10109733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5305	Open in IMG/M
3300032160\|Ga0311301_10218947	Not Available	3215	Open in IMG/M
3300033887\|Ga0334790_048852	Not Available	1595	Open in IMG/M
3300033887\|Ga0334790_089174	Not Available	1025	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	65.29%
Terrestrial	Environmental → Terrestrial	34.71%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	49.59%
Soil	Environmental → Terrestrial → Soil	29.75%
Sediment	Environmental → Aquatic → Sediment	9.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.79%
Peat	Environmental → Terrestrial → Peat	4.96%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	49.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.48%
Loam	Environmental → Terrestrial → Soil → Loam	0.83%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	33.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.66%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.79%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	18.18%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	10.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.79%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.31%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.65%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.65%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101643321	3300000567	Peatlands Soil	MTMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERHYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0062385_108207882	3300004080	Bog Forest Soil	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALVTAERCYMEAAREFGCTEVAARHRVSEVMGNLRTQVAAVAA*
Ga0062384_1002590271	3300004082	Bog Forest Soil	MSITPGSEEEDFLKVAVAAIPRVTEIIAAMPMEHRAGALQVAERRYEQAARDFGCAEVEVRNWVSAVMRNLESQVHQRASDQDKLNALLRNLTRSS*
Ga0062384_1005584001	3300004082	Bog Forest Soil	VAAIPRVTKIIAAYPAEYRSGALVTAERCYMEAAREFGCTEVAARHRVSEIMGNLRTQVAAVAA*
Ga0062384_1009601102	3300004082	Bog Forest Soil	MTTTWNSEEGNFLQVARAAIPRIAEIIATFPAEHRAGALEAAERRYAEAAGDFGCPVVAARTYVSDVMRDLRTEVETVAA*
Ga0062389_1018903912	3300004092	Bog Forest Soil	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERHYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0062388_1012391571	3300004635	Bog Forest Soil	VTTTWNSEEGNFLQVARAAIPRIAEIIATFPAEHRAGALEAAERRYAEAAGDFGCPVVAARTYVSDVMRDLRTEVETVAA*
Ga0062388_1026348671	3300004635	Bog Forest Soil	MTMILGSAEQNFLEVAVAAIPRITEIITGFPADGRAGALEVAERRYMEAARDFGCAEDAARIRVSEVMNSLRAQIDQQGIDQVHLK
Ga0066903_1038431572	3300005764	Tropical Forest Soil	MSSQEESFLQVALAAIPRVSELIVAFPADERGSALEAAERHFTAASQNFSCNEIAACVSNVMRNLRTRVEAVAV*
Ga0075028_1007957641	3300006050	Watersheds	MTTWGSKEKDFLEVAVAAIPRVTEIVAAYPAEYRSGALETAERCYMEAARDFGCTEVAALTRVSEVMGNLRTQVAAVTAWQAASGQLA*
Ga0075026_1007138331	3300006057	Watersheds	MTTWGSKEKDFLEVAVAAIPRVTEIVAAYAAEYRSGALETAERCYMEAARDFGCTEVAALTRVSEVMGNLRTQVAAVTAWQAASGQLA*
Ga0075017_1004845761	3300006059	Watersheds	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA*
Ga0075017_1008469991	3300006059	Watersheds	MTTWGSKEKDFLEVAVAAIPRVTEIVAAYPAEYRSGALETAERCYMEAARDFGCTEVAALTRVSE
Ga0075017_1011995872	3300006059	Watersheds	MDESITPGPEEENFLKVAVAAIPRIAEIIAGLPIEHRAGALEVAERRYVQAARDFGCAEVEVRNWVSAVMRNLETQVHQRA
Ga0075019_101406542	3300006086	Watersheds	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVFEVMGNLRTQVAAVAAWQAASGQLA*
Ga0075015_1003457851	3300006102	Watersheds	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVAALTRVSEVMRNLRTQVAAVAA*
Ga0075015_1010305981	3300006102	Watersheds	MTTWGSKEKDFLEVAVAAIPRVTEIVAAYPAEYRSGALETAERCYMEAARDFGCTEVAALTRVSEVMGNLR
Ga0075030_1010695641	3300006162	Watersheds	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA*
Ga0075014_1002662781	3300006174	Watersheds	MMTTLGSEEKKFVGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA*
Ga0073928_101320762	3300006893	Iron-Sulfur Acid Spring	MTTTWNSEERNFLQVARAAIPRIAEIIATFPAEHRAGALEAERRYAEAAGDFGCPEVAARTYVSDVMRDLRTEVETVAA*
Ga0073928_101552662	3300006893	Iron-Sulfur Acid Spring	VQSPRVTAMTTTWTSEEENFLQVALAAIPRITEIIAAFPAEHRVSALEAAERRYTEAARDFGCTEVAARTYVSDVMRNLRTQVETVAA*
Ga0073928_102038244	3300006893	Iron-Sulfur Acid Spring	MTTTWNSEEGNFLQVARAAIPRIAEIIATFPAEHRAGALEAAERRYAEAARDFGCPEVAARTYVSDVMRNLRTKVETVAA*
Ga0102924_13409531	3300007982	Iron-Sulfur Acid Spring	AMTTTWNSEERNFLQVARAAIPRIAEIIATFPAEHRAGALEAAERRYAEAAGDFGCPVVAARTYVSDVMRDLRTEVETVAA*
Ga0116108_10284143	3300009519	Peatland	MTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA*
Ga0116222_12032172	3300009521	Peatlands Soil	MTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYIEAARDFGCTEVAARTKVSEVMH
Ga0116218_15445591	3300009522	Peatlands Soil	MMMTLGSAEENFLEVAVAAIPRIIEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0116220_104671031	3300009525	Peatlands Soil	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAA
Ga0116138_11073281	3300009552	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVAA*
Ga0116102_10376244	3300009632	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEIMRNLRTQVGAAAA*
Ga0116112_12099452	3300009636	Peatland	MTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYIEAARDFGCTEVAARTKVSEVMHNLQLQVERR
Ga0116112_12379011	3300009636	Peatland	MTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRNLRTQVGAVAA*
Ga0116118_12796521	3300009637	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0116126_11443341	3300009640	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA*
Ga0116106_10537861	3300009645	Peatland	MTLGSAEENFLEVAVAAIPRIIEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA*
Ga0116130_11747471	3300009762	Peatland	FLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVVA*
Ga0116134_12255151	3300009764	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEIMRNLRTQVGAVAA*
Ga0116219_104934982	3300009824	Peatlands Soil	MTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERHYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0116223_106092501	3300009839	Peatlands Soil	MTLGSEEQSFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTRVSEV
Ga0136449_1000496723	3300010379	Peatlands Soil	MMTTSDSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVAALTRVSEVMRNLRTQVAAVAA*
Ga0136449_1001731597	3300010379	Peatlands Soil	MTMTLGSEEENFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTRVSEVMHNLHTQVERRGIGQQ
Ga0136449_1011203062	3300010379	Peatlands Soil	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAV
Ga0136449_1022021733	3300010379	Peatlands Soil	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAV
Ga0136449_1035955002	3300010379	Peatlands Soil	MALGSPEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMQAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0136449_1041248571	3300010379	Peatlands Soil	MRTTSSLEEEGFLQVAFAAIPRVTELIAAFPDEGRAAALEAAERHYKAAARNFGCNEAAAQTCVSDVMRNLRTQVEDAILDRCGD
Ga0181518_104257041	3300014156	Bog	MTMTLGSAEENFLEVAVAAIPRIIEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA*
Ga0181521_103820861	3300014158	Bog	MMMTLGSAEQNFLEVAVAAIPRITEILTAFPAEHRTGALEVAERRYMEAAQDFGCVEVAARSRVSEVMRNLRTQVGAVA
Ga0181521_104826512	3300014158	Bog	MTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSE
Ga0181530_102063411	3300014159	Bog	MMMTLGSAEENFLEVAVAAIPRITVIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA*
Ga0181532_101530911	3300014164	Bog	MTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA*
Ga0181532_101708213	3300014164	Bog	MMMTLGSAEENFLELAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSE
Ga0182018_103543352	3300014489	Palsa	MTLGSEEKNFLGVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAAREFGCTEVAARNRVSEVMGNLRTQVAAVAA*
Ga0182018_107054812	3300014489	Palsa	MMMQSGSAEENFLEVAIAAIPRVTEIITGLPAEYRAGALEVAERRYMDAAQNFGCADVAARTMVTEVMSNLRTDVGAVAA*
Ga0187802_103265461	3300017822	Freshwater Sediment	MTMTLGSEEENFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQAQVERRRILESVREH
Ga0187856_10359073	3300017925	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVAAVAA
Ga0187806_11071632	3300017928	Freshwater Sediment	MTMTLSSEEENFLEVAVAAIPRISEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQARVEATRDRSTELRGVAP
Ga0187877_10491932	3300017931	Peatland	MTMTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0187854_101479581	3300017938	Peatland	AEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0187819_103350822	3300017943	Freshwater Sediment	MTMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAAAA
Ga0187879_100196081	3300017946	Peatland	MTLGSEEESFLEVAIAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVVA
Ga0187879_101279015	3300017946	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEIMR
Ga0187879_101826961	3300017946	Peatland	MTMTLGSEEENFLEVAVAAIPRITKIIAAFPAEYRSGALETAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0187817_103393412	3300017955	Freshwater Sediment	MMTLGSAEENFLEVAVAAIPRITEIITAFPTEHRAGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0187783_102449502	3300017970	Tropical Peatland	VYLAGKPMSRTWNSDEESFAQVAFAAVPRIAEIIAAFPPEHRAGALEVAERRYTVAAQDFGCAEVACIADIMRNLRTQVEIAAA
Ga0181520_110864341	3300017988	Bog	MMMTLGSAEENFLELAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRSLRTQVGAVAA
Ga0187816_105138731	3300017995	Freshwater Sediment	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYLSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA
Ga0187891_10891281	3300017996	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYIEAARDFGCTEVAARTKVSEVMHNLQLQVERRG
Ga0187868_12875421	3300018002	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVAAVAA
Ga0187804_104507591	3300018006	Freshwater Sediment	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA
Ga0187805_101688802	3300018007	Freshwater Sediment	MTMTLGSEEENFLEVAVAAIPRISEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQARVEATRDRSTELRGVGP
Ga0187884_102937041	3300018009	Peatland	MTMTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0187860_11506811	3300018014	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0187880_10784223	3300018016	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0187872_100325757	3300018017	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0187889_100806373	3300018023	Peatland	MTMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRSLRTQVGAVAA
Ga0187881_100949462	3300018024	Peatland	MTMTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMR
Ga0187885_100381512	3300018025	Peatland	MTMTLGSAEENFLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRSLRTQVGAVAA
Ga0187867_102909761	3300018033	Peatland	MTMTLGSEEENFLEVAVAAIPRITKIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVVA
Ga0187883_100303254	3300018037	Peatland	VAIAAIPRITEIIAALPAEYCSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVVA
Ga0187883_101997121	3300018037	Peatland	MTLGSEEESFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNL
Ga0187862_100116576	3300018040	Peatland	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEIMRNLRTQVGAVAA
Ga0187871_102769732	3300018042	Peatland	MTLGSEEESFLEVAIAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0187871_104697661	3300018042	Peatland	MTLGLEEENFLEVAVAAIPRISEIIAAYPAEHRAGAFQVAERNYFEAAQNFGCTEESAQTWVSEVMR
Ga0187858_105319941	3300018057	Peatland	MTLGSEEESFLEVAVAAIPRITEIIAAFPAEYRSGALETAERRYMEAARDFGCTEVAARTKVSEVMHNLQTQVGAVVA
Ga0210395_102360612	3300020582	Soil	MRTTSSLEEEGFLQVAFAAIPRVTELIAAFPDEGRAAALEAAERHYKIAARNFGCNEAAARTCVSDVMRNLRTQVEDAILDRAGD
Ga0210395_107762462	3300020582	Soil	MRTISSLEEEGFLQVAFAAIPRVTKLIAAFPDEERAGALQAAERHYTAAARNFGCNEAAARTCVSDVMRNLRTKVEATAR
Ga0210401_104878172	3300020583	Soil	MRTISSLEEEGFLQVAFAAIPRVTKLIAAFPDEERAGALQGAERHYTAAARNFGCNEAAARTCVSDVMRNLRTKVEAAAR
Ga0210401_106635102	3300020583	Soil	MRTTSSLEEEGFLQVAFAAIPRITELIAAFPDEGRAAALEAAERHYKIAARNFGCNEAAARTCVSDVMRNLRTQVEDAILDRAGD
Ga0210390_101519731	3300021474	Soil	MRTISSLEEEGFLQVAFAAIPRVTKLIAAFPDEERAGALQAAERHYTAAARNFGCNEAAARTCVSDVMRNLRTKVEAAAR
Ga0210390_116441871	3300021474	Soil	MRTTSSLEEEGFLQVAFAAIPRVTELIAAFPDEGRAAALEAAERHYKTAARNFGCNEAAARTCVSDVMRNLRTQVEDAILDRGGD
Ga0210398_100895021	3300021477	Soil	SLEEEGFLQVAFAAIPRVTKLIAAFPDEERAGALQAAERHYTAAARNFGCNEAAARTCVSDVMRNLRTKVEAAAR
Ga0212123_102514702	3300022557	Iron-Sulfur Acid Spring	MTTTWNSEERNFLQVARAAIPRIAEIIATFPAEHRAGALEAERRYAEAAGDFGCPEVAARTYVSDVMRDLRTEVETVAA
Ga0212123_103184951	3300022557	Iron-Sulfur Acid Spring	MTTTWTSEEENFLQVALAAIPRITEIIAAFPAEHRVSALEAAERRYTEAAQDFGCTEVAARTYVSDVMRNLRTQVETVAA
Ga0209171_104571121	3300025320	Iron-Sulfur Acid Spring	VQSPRVTAMTTTWTSEEENFLQVALAAIPRITEIIAAFPAEHRVSALEAAERRYTEAAQDFGCTEVAARTYVSDVMRNLRTQVETVAA
Ga0208323_10290352	3300025439	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYIEAARDFGCTEVAARTKVSEVMHNLQLQVER
Ga0208562_10909861	3300025460	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYIEAARDFGCTEVAARTKVSEVMHNLQLQVE
Ga0208819_11153062	3300025498	Peatland	MTMTLGSEEENFLEVAVAAIPRITEIITAFPAEYRSGALETAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0208827_11290711	3300027641	Peatlands Soil	MMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERHYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0209446_11431721	3300027698	Bog Forest Soil	MTMTWGSEEENFLQVAFAAVPRITEIIVAFPAEHRAGALEVVERRYTKAAQDFGCAEEAARTCVSDVMRNLRTQMETVAA
Ga0209038_101908322	3300027737	Bog Forest Soil	MTMTWGSEEENFLHVAFSAVPRITEIIVAFPAEHRAGALEVVERRYTKAAQDFGCAEEAARTCVSDVMRNLRTQMETVAA
Ga0209655_101727781	3300027767	Bog Forest Soil	MTMTWGSEEENFLQVAFAAVPRISEIIVAFPTEHRAGALEVVERRYTKAAQDFGCAEEAARTCVSDVMRNLRTQMETVAA
Ga0209772_101838481	3300027768	Bog Forest Soil	MSITPGSEEEDFLKVAVAAIPRVTEIIAAMPMEHRAGALQVAERRYEQAARDFGCAEVEVRNWVSAVMRNLESQVHQRASDQDKLNALLRNLTRSS
Ga0209517_102649432	3300027854	Peatlands Soil	MTMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAERHYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0209517_105773931	3300027854	Peatlands Soil	MTMTLGSAEENFLEVAVAAIPRIIEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0209068_101805372	3300027894	Watersheds	MTTWGSKEKDFLEVAVAAIPRVTEIVAAYPAECRSGALETAERCYMEAARDFGCTEVAALTRVSEVMGNLRTQVAAVTAWQAASGQLA
Ga0209067_102741962	3300027898	Watersheds	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVFEVMGNLRTQVAAVAAWQAASGQLA
Ga0265353_10067682	3300028015	Soil	FLEVAVAAIPRITEIITTFPAEHRTGALEVAERRYMEAARDFGCVEVTARSRVSEVMRSLRTQVGAVAA
Ga0311338_118918691	3300030007	Palsa	MTLGLEEENFLEVAVAAIPRISEIIAAYPAEHRAGAFQVAERNYFEAAQNFGCTEESAQTWVSEVMRGVRTQVDRQGID
Ga0311353_104279942	3300030399	Palsa	MTLGSEEENFLEVAVAAIPRISERISAFPAEHRAGALEVAERRYMEAARDFGCTEVAARTWVTEVMRGLRTQVER
Ga0311357_112098261	3300030524	Palsa	MTLGLEEENFLEVAVAAIPRISEIIAAYPAEHRAGAFQVAERNYFEAAQNFGCTEESAQTWVSEV
Ga0311356_110273541	3300030617	Palsa	MTLGLEEENFLEVAVAAIPRISEIIAAYPAEHRAGAFQVAERNYFEAAQNFGCTEESAQTWVSEVM
Ga0310686_1001063952	3300031708	Soil	MRVTTMRTLWSPQEESFLQLAFAAIPRIIELIAAFPAEERAGALEAAERHYTVAAQNFGCNEVGARTCVSDVMRTLRTRVEAVAA
Ga0310686_1084238601	3300031708	Soil	MTTTWSSEEGNFLQVAHAAIPRITEIIAAFPAEHRAGALEAAERRYTEAARDFGCTELAARTYVSDVMRNLRTQVETVAA
Ga0310686_1145774034	3300031708	Soil	MRTTSSLEEEGFLQVAFAAIPRVTELIAAFPDEGRAAALEAAERHYKTAARNFGCNEAAARTCVSDVMRNLRTQVEDAILDCGD
Ga0310686_1165298662	3300031708	Soil	MTTTWTSEEENFLQVALAAIPRITEIIAAFPAEHRVGALEAAERRYTEAARDFGCTEVAARTYVSDVMRNLRTQVETVAA
Ga0310686_1178431571	3300031708	Soil	MTTTLGSREKKFLEVAVAAIPRVTEIIAAFPVEYRSGALETAERRYMETARDFGCTEAAARSRVSEVMHNLRTRVEAAYA
Ga0310686_1182169231	3300031708	Soil	MTTTWNSEEGNFLQVARAAIPRIAEIIATFPAEHRAGALEAAERRYAEAAGDFGCPVVAARTYVSDVMRDLRTEVETVAA
Ga0311301_100792298	3300032160	Peatlands Soil	MMTTLGSEEKKFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVATWQAASGQLA
Ga0311301_1010973312	3300032160	Peatlands Soil	MMTTSDSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVAALTRVSEVMRNLRTQVAAVAA
Ga0311301_102189474	3300032160	Peatlands Soil	MMTTLGSEEKNFLGVAVAAIPRVTEIIAAYPAEYRSGALETAERCYMEAAREFGCTEVTALTRVSEVMGNLRTQVAAVAAWQAASGQLA
Ga0334790_048852_977_1219	3300033887	Soil	MMMTLGSAEENFLEVAVAAIPRIIEIITAFPAEHRTGALEVAERRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA
Ga0334790_089174_343_591	3300033887	Soil	VLMMMTLGSAEENFLEVAVAAIPRITEIITAFPAEHRTGALEVAECRYMEAARDFGCVEVAARSRVSEVMRNLRTQVGAVAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072639

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences