Metagenome / Metatranscriptome Family F072637

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072637
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	54 residues
Representative Sequence	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSAVEYLYADVSDANSILATI
Number of Associated Samples	90
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.11 %
% of genes near scaffold ends (potentially truncated)	90.91 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.851 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (52.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.719 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF05988	DUF899	8.26
PF03795	YCII	5.79
PF00144	Beta-lactamase	4.13
PF13602	ADH_zinc_N_2	3.31
PF04264	YceI	3.31
PF06439	3keto-disac_hyd	3.31
PF01402	RHH_1	2.48
PF00753	Lactamase_B	2.48
PF02574	S-methyl_trans	1.65
PF07969	Amidohydro_3	1.65
PF00107	ADH_zinc_N	1.65
PF00085	Thioredoxin	0.83
PF04185	Phosphoesterase	0.83
PF05960	DUF885	0.83
PF02781	G6PD_C	0.83
PF04014	MazE_antitoxin	0.83
PF00857	Isochorismatase	0.83
PF08240	ADH_N	0.83
PF07638	Sigma70_ECF	0.83
PF09996	DUF2237	0.83
PF13520	AA_permease_2	0.83
PF12681	Glyoxalase_2	0.83
PF04952	AstE_AspA	0.83
PF13614	AAA_31	0.83
PF00589	Phage_integrase	0.83
PF04389	Peptidase_M28	0.83
PF00892	EamA	0.83
PF12695	Abhydrolase_5	0.83
PF02374	ArsA_ATPase	0.83
PF05016	ParE_toxin	0.83
PF04338	DUF481	0.83
PF08811	DUF1800	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	8.26
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	4.13
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	4.13
COG2367	Beta-lactamase class A	Defense mechanisms [V]	4.13
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	3.31
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	1.65
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	1.65
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.83
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.83
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.83
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.83
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.85 %
Unclassified	root	N/A	42.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.85 %
Unclassified	root	N/A	42.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.85 %
Unclassified	root	N/A	42.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.05 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.26 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.48 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.65 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.05 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.65 %
Holosporales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales	1.65 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.83 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.83 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.05 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	5.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	1.65 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.83 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.83 %
unclassified Bdellovibrionales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales	0.83 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.05 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	5.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	1.65 %
Bdellovibrionales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium	0.83 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.83 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.83 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.05 %
unclassified Bauldia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia	5.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	1.65 %
Pelomonas saccharophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	0.83 %
Bdellovibrionales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium	0.83 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.83 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.05 %
Bauldia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	5.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	1.65 %
Pelomonas saccharophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	0.83 %
Bdellovibrionales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium	0.83 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.83 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12135891	Not Available	624	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1074546	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005176\|Ga0066679_10876415	Not Available	567	Open in IMG/M
3300005177\|Ga0066690_10012419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4435	Open in IMG/M
3300005332\|Ga0066388_104415780	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005437\|Ga0070710_10580939	Not Available	778	Open in IMG/M
3300005440\|Ga0070705_101724581	Not Available	530	Open in IMG/M
3300005534\|Ga0070735_10486489	Not Available	735	Open in IMG/M
3300005534\|Ga0070735_10915619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300005541\|Ga0070733_10730760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300005764\|Ga0066903_101091354	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300005764\|Ga0066903_101967979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300006102\|Ga0075015_100060127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1822	Open in IMG/M
3300006162\|Ga0075030_100057871	All Organisms → cellular organisms → Bacteria	3222	Open in IMG/M
3300006174\|Ga0075014_100355085	Not Available	787	Open in IMG/M
3300006804\|Ga0079221_10189049	All Organisms → cellular organisms → Bacteria → Acidobacteria	1117	Open in IMG/M
3300006804\|Ga0079221_10283875	Not Available	961	Open in IMG/M
3300006804\|Ga0079221_11459043	Not Available	547	Open in IMG/M
3300006854\|Ga0075425_101824116	Not Available	682	Open in IMG/M
3300006903\|Ga0075426_10133172	All Organisms → cellular organisms → Bacteria	1790	Open in IMG/M
3300009792\|Ga0126374_11404624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300010048\|Ga0126373_10021257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5492	Open in IMG/M
3300010048\|Ga0126373_10851224	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300010048\|Ga0126373_10891630	Not Available	953	Open in IMG/M
3300010048\|Ga0126373_10948622	Not Available	925	Open in IMG/M
3300010048\|Ga0126373_11975664	Not Available	646	Open in IMG/M
3300010048\|Ga0126373_12207077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300010048\|Ga0126373_12378409	Not Available	590	Open in IMG/M
3300010360\|Ga0126372_12211630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300010361\|Ga0126378_13336061	Not Available	510	Open in IMG/M
3300010366\|Ga0126379_10990728	Not Available	945	Open in IMG/M
3300010376\|Ga0126381_100882816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1287	Open in IMG/M
3300010376\|Ga0126381_104822563	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300010398\|Ga0126383_10246237	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300012957\|Ga0164303_11133509	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300012960\|Ga0164301_10480541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	891	Open in IMG/M
3300016270\|Ga0182036_10633263	Not Available	860	Open in IMG/M
3300016319\|Ga0182033_10368249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300016341\|Ga0182035_10126002	All Organisms → cellular organisms → Bacteria → Acidobacteria	1925	Open in IMG/M
3300016341\|Ga0182035_12158087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300016357\|Ga0182032_10998714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300016404\|Ga0182037_10567517	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300016422\|Ga0182039_10016942	All Organisms → cellular organisms → Bacteria → Acidobacteria	4401	Open in IMG/M
3300016445\|Ga0182038_10929835	Not Available	767	Open in IMG/M
3300016445\|Ga0182038_11776826	Not Available	556	Open in IMG/M
3300020581\|Ga0210399_10757325	Not Available	795	Open in IMG/M
3300021171\|Ga0210405_10968635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300021559\|Ga0210409_10029496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5285	Open in IMG/M
3300021559\|Ga0210409_11236384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300021560\|Ga0126371_12169869	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300025916\|Ga0207663_10145280	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300026325\|Ga0209152_10257302	Not Available	649	Open in IMG/M
3300027527\|Ga0209684_1041070	Not Available	709	Open in IMG/M
3300027765\|Ga0209073_10229694	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300030002\|Ga0311350_11641971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	569	Open in IMG/M
3300030838\|Ga0311335_10346022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	1016	Open in IMG/M
3300030854\|Ga0075385_11809920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium	536	Open in IMG/M
3300031057\|Ga0170834_112654774	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300031545\|Ga0318541_10343211	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300031549\|Ga0318571_10391162	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300031561\|Ga0318528_10233835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	985	Open in IMG/M
3300031561\|Ga0318528_10367660	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300031573\|Ga0310915_10152941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1596	Open in IMG/M
3300031573\|Ga0310915_10527288	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300031573\|Ga0310915_11074984	Not Available	560	Open in IMG/M
3300031668\|Ga0318542_10736133	Not Available	516	Open in IMG/M
3300031680\|Ga0318574_10516868	Not Available	700	Open in IMG/M
3300031724\|Ga0318500_10234539	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300031724\|Ga0318500_10600512	Not Available	558	Open in IMG/M
3300031753\|Ga0307477_10752871	Not Available	649	Open in IMG/M
3300031754\|Ga0307475_11051208	Not Available	638	Open in IMG/M
3300031768\|Ga0318509_10248199	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300031768\|Ga0318509_10507539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	674	Open in IMG/M
3300031770\|Ga0318521_10926569	Not Available	533	Open in IMG/M
3300031771\|Ga0318546_11106953	Not Available	557	Open in IMG/M
3300031777\|Ga0318543_10180707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	934	Open in IMG/M
3300031781\|Ga0318547_10177064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1266	Open in IMG/M
3300031782\|Ga0318552_10302065	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031796\|Ga0318576_10408425	Not Available	642	Open in IMG/M
3300031819\|Ga0318568_10722652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	619	Open in IMG/M
3300031821\|Ga0318567_10858608	Not Available	514	Open in IMG/M
3300031823\|Ga0307478_11551269	Not Available	547	Open in IMG/M
3300031846\|Ga0318512_10426469	All Organisms → cellular organisms → Bacteria → Proteobacteria	668	Open in IMG/M
3300031860\|Ga0318495_10333582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	673	Open in IMG/M
3300031879\|Ga0306919_10486007	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031879\|Ga0306919_10666086	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300031879\|Ga0306919_10714630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300031880\|Ga0318544_10382505	Not Available	547	Open in IMG/M
3300031890\|Ga0306925_11023350	Not Available	840	Open in IMG/M
3300031890\|Ga0306925_11787429	Not Available	589	Open in IMG/M
3300031897\|Ga0318520_10914271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300031902\|Ga0302322_100109285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2891	Open in IMG/M
3300031912\|Ga0306921_12155402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031941\|Ga0310912_10095084	All Organisms → cellular organisms → Bacteria	2185	Open in IMG/M
3300031941\|Ga0310912_10357896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1134	Open in IMG/M
3300031941\|Ga0310912_11446827	Not Available	518	Open in IMG/M
3300031942\|Ga0310916_10636456	Not Available	905	Open in IMG/M
3300031942\|Ga0310916_11105224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	658	Open in IMG/M
3300031954\|Ga0306926_10077562	All Organisms → cellular organisms → Bacteria → Proteobacteria	4035	Open in IMG/M
3300031954\|Ga0306926_11831609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300031962\|Ga0307479_11976952	Not Available	532	Open in IMG/M
3300032001\|Ga0306922_10470545	All Organisms → cellular organisms → Bacteria → Acidobacteria	1341	Open in IMG/M
3300032009\|Ga0318563_10340078	Not Available	812	Open in IMG/M
3300032025\|Ga0318507_10364170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	630	Open in IMG/M
3300032059\|Ga0318533_10710175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300032066\|Ga0318514_10334311	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300032068\|Ga0318553_10318698	Not Available	813	Open in IMG/M
3300032076\|Ga0306924_10472442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1431	Open in IMG/M
3300032180\|Ga0307471_100855994	Not Available	1076	Open in IMG/M
3300032261\|Ga0306920_100326575	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2284	Open in IMG/M
3300032828\|Ga0335080_11142035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	786	Open in IMG/M
3300033290\|Ga0318519_10720067	Not Available	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.35%
Host-Associated	Host-Associated	1.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.87%
Aquatic	Environmental → Aquatic	2.48%
Plants	Host-Associated → Plants	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.39%
Sediment	Environmental → Aquatic → Sediment	2.48%
Peat	Environmental → Terrestrial → Peat	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.78%
Loam	Environmental → Terrestrial → Soil → Loam	5.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.22%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.48%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_121358911	3300000789	Soil	LACSLLVSPKSISADTVLGADSEKVSEVEYLYADVSDANSILAAIDSSLLSTYQGKGRVAWAAGLVGCECVHHF*
AP72_2010_repI_A001DRAFT_10745461	3300000893	Forest Soil	MKKLLSLGLACSLLLLLEPVATAAGLMADSKNVSAVEYLYADVSDAN
Ga0066679_108764151	3300005176	Soil	MKNLLSLGLACSLLLSPKSIGADAGLLAGSKKVSAVEYLYADVSDANTILAT
Ga0066690_100124198	3300005177	Soil	MKNLLSLGLACSLLLSPKSIGADAGLLAGSKKVSAVEYLYAD
Ga0066388_1044157802	3300005332	Tropical Forest Soil	MKNLLLLSLVCSLLVSPKSVSADTGLMADSKKVTAVEYLYADVSDANSILATIDSGLLSTYQG
Ga0070710_105809391	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKNLLCVGLACSLLISGNSMGADAALVADSKKVSGVEYLYADVSDANTILAAI
Ga0070705_1017245811	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLLSLGLACSLLLSLHPVGTAAGLMADSKAVAAVEYLYADVSDANTILAAIDSGLLSSYQG
Ga0070735_104864891	3300005534	Surface Soil	MKNLLLFSLACSLLVSPKSLSADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLLST
Ga0070735_109156192	3300005534	Surface Soil	MKNLLLLSLACSLLVSPKSLGADTGLMADSKKVSAVEYLYADVSDA
Ga0070733_107307601	3300005541	Surface Soil	MKNLLLLSLACSLLVSPKSLSADTGLMADSKKVSAVEYLYADVSDANSILGTIDSGLL
Ga0066903_1010913542	3300005764	Tropical Forest Soil	MKNLLFLGLACSLLVLPKSVRADTGLRADSKKVSALEDLYADVSDANSILATIDSG
Ga0066903_1019679793	3300005764	Tropical Forest Soil	MKNLLSLGLTCGLLLSSESIGADAGLMPDSKKVSTVEYLY
Ga0075015_1000601272	3300006102	Watersheds	MKNLLSLGLACSLFLSFKSIGADAGVMADSKKVSAVEYLYADVSDTNTILATIDFRPAKDLPG*
Ga0075030_1000578711	3300006162	Watersheds	MKNLLLLSLACSLLVSPKSISADTGLMADSKKVSAVEYLYADVSDAN
Ga0075014_1003550852	3300006174	Watersheds	MKNLLSISLTCSLLVSPNSICADSGLVAESKKVWAFEYLYADVSDANTILGTIDSGLLST
Ga0079221_101890491	3300006804	Agricultural Soil	MKNLLLLSLVCTLLVSPQSISASTGLMPDSKKVSAVEYLYAEVSDANTILGTIDSGLLSTYQGKD
Ga0079221_102838751	3300006804	Agricultural Soil	MKNLLLLSLVCTLLVSPQSSSANTGLRADSKKVSAVEYLYAEVSDANTILGTID
Ga0079221_114590431	3300006804	Agricultural Soil	MRNLLYVSLVCALLISPKSISANTGLMADSKKVSAVEYLYAEVSDANTILGTIDSGLLSTYQGKD
Ga0075425_1018241162	3300006854	Populus Rhizosphere	MKKLLLLSLACSLLVSPKSISADTVLGADSEKVSEVEYLYADVSDANRILAAIDSG
Ga0075426_101331721	3300006903	Populus Rhizosphere	MKPLLSLALACSLLLSDKSIGADTAPRAELKTVSA
Ga0126374_114046241	3300009792	Tropical Forest Soil	MKNLLSLSLACSLLLSRQSISADAVLTADSKKVSAVEYLYADVSDANSILATIDSGLLGTYRGKDRAAWQ
Ga0126373_100212571	3300010048	Tropical Forest Soil	MKTLLSLGLACSLVLSPKSIGADAGLTADSKKVSAVEYLYADVSDINTILGTI
Ga0126373_108512241	3300010048	Tropical Forest Soil	MKNLLSVGLACSLFLSAKSIGADAGLMADSKKVSAVEY
Ga0126373_108916303	3300010048	Tropical Forest Soil	MKNLLSLCLSCSLLLSPKSISADSGLLADSKKVSAVEYLYADVSDANTILGTIDSGLLSTYQGKDR
Ga0126373_109486222	3300010048	Tropical Forest Soil	MKNLLLLSLACSLLVSPKSISADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLLST
Ga0126373_119756642	3300010048	Tropical Forest Soil	MKNLLSLSLACLLLSPKSISADSGLMADSKKVSAVEYLYADVSDAN
Ga0126373_122070772	3300010048	Tropical Forest Soil	MKNPLSLTLACSLLLSPKSIGAHAGLMADSKKVSAVEYLYADVS
Ga0126373_123784092	3300010048	Tropical Forest Soil	VKNLLSLGLACGLLLSSKSIGADASLMAGSQKVSAVEYLY
Ga0126372_122116302	3300010360	Tropical Forest Soil	MKNLRFLVLACGLLLLSKSISADGGIRAGSKKVSAIEYLYADVSDA
Ga0126378_133360611	3300010361	Tropical Forest Soil	MKNLLSLGLACGLLLSSKSIGADPALMADSNKVAAVEYLYADVSDANTIL
Ga0126379_109907281	3300010366	Tropical Forest Soil	MKNLLFVTLACSLLLSPKSIGADPGLRADSKRVSVVEYLYADVSDTNSILATID
Ga0126381_1008828162	3300010376	Tropical Forest Soil	MKNLLFLSLACSLLVLPKPISADTGLRADSKKVSAVEYLYADVS
Ga0126381_1048225631	3300010376	Tropical Forest Soil	MKNLLFLSLACSLFFSRQSISAGAGLMADSQKVSAVEYLYADVSDANSI
Ga0126383_102462371	3300010398	Tropical Forest Soil	MKDLLSLGLACSLLFSLKSLGADSRSIGSSKKVAAVECLYADVSDANTILGSIDSGL
Ga0164303_111335092	3300012957	Soil	MKKLLSLGLACSLLLSLHPVGTAAGLMADSKAVAAVEYLYADVSDANTILAAID
Ga0164301_104805411	3300012960	Soil	MKQVLSACLAGSLIFSLQSVAASDSLLADSKAVSAVEYLYADASDANTILAAIDSGLLKDYEGK
Ga0182036_106332631	3300016270	Soil	MKNLLSLGLACGLILASKSIGADAGLLADSNKVAAVESLYADVSDANTT
Ga0182033_103682492	3300016319	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVEEL
Ga0182035_101260021	3300016341	Soil	MKNLLPLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTIL
Ga0182035_121580871	3300016341	Soil	MKNLLLLSLACSLLVLPKSISADTGLRADSKKVSAVEYLYADVSDANSILATIDSGLLSTYQGKDHA
Ga0182032_109987142	3300016357	Soil	MKNLLFLSLACSLLLSRQSISADGGLMADSKKVSAVEYLYADVSDANTILATIDSGLRSTYQGKDRAAWEQ
Ga0182037_103515961	3300016404	Soil	MKNLLPLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYA
Ga0182037_105675171	3300016404	Soil	MKTLLLLSLVCSLLVSPKSISADTVLMADSKKVSVVEYLYADVSDANSILATINSGLLSTYQGKDRAA
Ga0182039_100169421	3300016422	Soil	MKTLLLLSLVCSLLVSPKSISADTVLMADSKKVSVVEYLYADVSDANSILATIDSGLLKTYQGKDRAAWQ
Ga0182039_121308971	3300016422	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSV
Ga0182038_109298351	3300016445	Soil	MKNLLFLSLACSLLVLPKAISADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLLS
Ga0182038_115285692	3300016445	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYA
Ga0182038_117768262	3300016445	Soil	MKNLLSLSLACSLLLWPKSVGADAALMADSKKVSVVEYLYADVSDANTILSTIDSGLLSTYQGKDRA
Ga0210399_107573251	3300020581	Soil	MKNLLSLSLACSLLLSPKSISADAGPMANSKKVLAVEYLYADVSDANSILGTIDSGLL
Ga0210405_109686352	3300021171	Soil	MKNLLSLSLACSLLLSPKSISADAGPMANSKKVSAVEYLYADVSDANSILGTIDSGLLSTYRGK
Ga0210409_100294961	3300021559	Soil	MKNLLSLSLACSLLLSPKSLSADAGPMTDSKKVSAVEYLYADVSDANSILGTIDSGLLSTYRGKDRAAWEQFY
Ga0210409_112363841	3300021559	Soil	MKNLLFLSLACSLLLSPKSISADAGPMANSKKVSAV
Ga0126371_109308211	3300021560	Tropical Forest Soil	MKNLLPLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADV
Ga0126371_121698692	3300021560	Tropical Forest Soil	MKNILGFGLACSLLFSFESIGADASLMADSKQVSAVEYLYADVSDANTILATIDSGLLS
Ga0207663_101452802	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLLSLGLACSLLLSVKPLGADALPTGGSKKVSAVEFLYADV
Ga0209152_102573021	3300026325	Soil	MKNLLSLSLACSLLLSPKSIGANAGLMADSAKVSPVESLYADL
Ga0209684_10410701	3300027527	Tropical Forest Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSAVEYLYADVSDANSILATI
Ga0209073_102296942	3300027765	Agricultural Soil	MKNLLLVSLVCTLLASPKSISASTGLMPDSKKVSAVEYLYAEVSDANTILGTIDSGLLS
Ga0311350_116419711	3300030002	Fen	MKQLISLGLACSLLLPLSSMAADRGLMADSKKVSVIEYLYADVSDAN
Ga0311335_103460222	3300030838	Fen	MGPMKHLLSLALACSLLLSLRSMGADGGLMADSKSVAAVENLYAEVSDANTILAAIDSGLLS
Ga0075385_118099201	3300030854	Soil	MKNLLSLSLACSLLLSPKSISADAGPMADSKKVSAVEYLYADVSDANSILGTIDSGLLSTYRGKDR
Ga0170834_1126547741	3300031057	Forest Soil	MKNLLSIGLACNLLVSPNSICVDSGLIADSKKVLAVEYLYADVSDANTI
Ga0318541_103432112	3300031545	Soil	MKNLLPLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTI
Ga0318571_103911622	3300031549	Soil	MKNLLSLSVACSLLLSLGPVATAAGLMADSKTVSAVEYLY
Ga0318528_102338352	3300031561	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLY
Ga0318528_103676602	3300031561	Soil	MKNLLSLSVACSLLLSLGPVATAAGLMADSKTVSAVEYL
Ga0318573_108206981	3300031564	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDAN
Ga0310915_101529413	3300031573	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTIL
Ga0310915_105272882	3300031573	Soil	MKNLLPLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTILSTCGAGLLGS
Ga0310915_110749841	3300031573	Soil	MKNLLSLSLACSLLLSPKSISADSGLMADSKKVSAVEYLYADVSD
Ga0318542_107361332	3300031668	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTILAAIDSGLLSS
Ga0318574_105168682	3300031680	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVEYLYADVSDANTVLATIDSGLLSSYQGKG
Ga0318500_102345391	3300031724	Soil	MKNLLSLSLACSLLLWPKSVGADAALMADSKKVSVVEYLYADVSDANTILSTIDSGLLSN
Ga0318500_106005122	3300031724	Soil	MKNLASLGLACSLFLSLESIGADAGLMADSKQVSAVEYLYADVSDANTILA
Ga0318492_102836942	3300031748	Soil	MKNLLSLSLACSLLLWPKSVGADAALMADSKKVSV
Ga0307477_107528711	3300031753	Hardwood Forest Soil	MKNLLSLSLAWGLLLSPKSISADAAFMADSNKVSAVEYLYADVSD
Ga0307475_110512081	3300031754	Hardwood Forest Soil	MKNLLSLSLACSLLLSPKSISSDAGPVASSKKVSEVEYLYADVSDANSILATID
Ga0318509_102481991	3300031768	Soil	MKTLLLLSLVCSLLVSPKSISADTVLMADSKKVSVVEYLYADVSDANSILATINSGLLST
Ga0318509_105075391	3300031768	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTILATIDSGLLSSYQGKDRA
Ga0318521_109265691	3300031770	Soil	MKNLLSLSLACSLLLSPKSISADAGPMANSKKVSAVEYLYADVSDANSILGTIDSGLLS
Ga0318546_111069532	3300031771	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTILSTIDS
Ga0318543_101807072	3300031777	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYL
Ga0318547_101770643	3300031781	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVEYLYADVSDANTVLATIDS
Ga0318552_103020651	3300031782	Soil	MKNLLSLSLACSLLLWPKSVGADAALMADSKKVSVVEYLYADVSDANTILST
Ga0318576_104084251	3300031796	Soil	MKNLLSLGLACGLLLASKSIGADAGLLADSNKVAAVEYLY
Ga0318568_107226522	3300031819	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTILA
Ga0318567_108586081	3300031821	Soil	MKNLLFLSLACSLLLSRQSISADGGLMADSKKVSAVEYLYADVSDANTILATIDSGLRSTYQGKD
Ga0307478_115512692	3300031823	Hardwood Forest Soil	MKNLLSLGLACSLLLSSKSIGADAGLMADSKKVSAVEYLYADVSD
Ga0318512_104264691	3300031846	Soil	MKNLLSLSVACSLLLSLGPVATAAGLMADSKTVSAVEYLYADVSDANTILAAIDSGLLSSYQGKDR
Ga0318495_103335822	3300031860	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDAN
Ga0306919_104860072	3300031879	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTILSTIDSGLLSTYQGKD
Ga0306919_106660862	3300031879	Soil	MKTLLLLSLVCSLLVSPKSISADTVLMADSKKVSVVEYLYADVSD
Ga0306919_107146301	3300031879	Soil	MKSLLLLSLACSLLVLPKAISADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLLSTYRG
Ga0318544_103825051	3300031880	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTI
Ga0306925_110233501	3300031890	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTILSTIDSGLLSTYQGKDRAAWE
Ga0306925_117874291	3300031890	Soil	MKNLASLGLACSLFLSLESIGADAGLMADSKQVSAVEYLYADVSDANTILATIDSGLLSSYQGKD
Ga0318520_109142711	3300031897	Soil	MKNLLSLSLACSLLLSPKSISADSGLMADSKKVSAVEYLYADVSDANSILGTIDSGLLST
Ga0302322_1001092851	3300031902	Fen	MGPMKHLLSLALACSLLLSLRSMGADGGLMADSKSVAAVENLYAEVSDANTILAAIDSGLLSSYHGKDRAAW
Ga0306923_118304662	3300031910	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEY
Ga0306921_121554021	3300031912	Soil	MKNLLSLSLACSLLLSPKSISADAGPMANSKKVSAVEYLYADVSDANSILGTIDSGLLSTYRGKDRAAWEQFY
Ga0310912_100950841	3300031941	Soil	MKTLLLLSLVCSLLVSPKSISADTVLMADSKKVSVVEYLYADVSDANSILATIDSGLLSTYQGKDRAAWQQF
Ga0310912_103578962	3300031941	Soil	MKNLLSLSVACSLLLSLGPVATAAGLMADSKTVSAVEYLYADVSDANTILAAIDSGLLSS
Ga0310912_114468271	3300031941	Soil	MKSLLLLSLACSLLVLPKAISADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLLS
Ga0310916_106364563	3300031942	Soil	MKNLASLGLACSLFLSLESIGADAGLMADSKQVSAVEYLYADVSDANTILATIDSGLLSSYQ
Ga0310916_111052241	3300031942	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYADVSDANTILAAIDSGLLSGYQGKNR
Ga0306926_100775621	3300031954	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVEYLYADVSDANTVLATIAAGLLSSYQGNGRAAWE
Ga0306926_118316091	3300031954	Soil	MKNLLFLSLACSLLVLPKPISAGTGLRADSKKVSAVEYLYADVSDANSILATIDSGLLSTYQGKDRAAWQQ
Ga0307479_119769521	3300031962	Hardwood Forest Soil	MKNLLSVGLACSLLLSPKPIGADAGFMAGSIKVSAVEYLYADVSDANS
Ga0306922_104081361	3300032001	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVIEYLYA
Ga0306922_104705451	3300032001	Soil	MKNLLSLSLACSLLLWPKSMGADAALMADSKKVSVVEYLYADVSDANTILSTIDSGLLSTYQGKDRAAWEQFY
Ga0318563_103400783	3300032009	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVEYLYADVSDANTV
Ga0318507_103641702	3300032025	Soil	MKNLLSLGLACSVLLSFEAVGADAGLMADSKQVSAVEYLYAD
Ga0318558_104955271	3300032044	Soil	MKNLLSLSLACSLLLWPKSVGADAALMADSKKVSVVEYLYDDVSDAN
Ga0318533_107101751	3300032059	Soil	MKSLLLLSLACSLLVLPKAISADTGLMADSKKVSAVEYLYADVSDANSILATIDSGLL
Ga0318514_103343111	3300032066	Soil	MKNLLSLSVACSLLLSLGPVATAAGLMADSKTVSAVEYLYADVSDANTILAAIDSGLLSSYQGKD
Ga0318553_103186982	3300032068	Soil	MKNLASLGLACSLFLSPESIGADAGLMADSKQVSAVEYLYADVSDAN
Ga0306924_104724421	3300032076	Soil	MKNLLSLSLACSLLLSPKSISADSGLMADSKKVSAVEYLYADVSDANSILGTIDSGLLSTYQGKDRAA
Ga0307471_1008559941	3300032180	Hardwood Forest Soil	MKNLLSLSLACSLLLSPKSISSDAGPVANSKKVSEVEYLYADVSD
Ga0306920_1003265754	3300032261	Soil	MKNLASLGLACSLFLSLESIGADAGLMADSKQVSAVEYLYADVSDANTILATIDSGLLSSYQGKDRTA
Ga0335080_111420352	3300032828	Soil	MKNLLSLGLACTLLLALEPKAADAPFLADSKAVSAVEYLYADVSDANTILATIDSGLLSNYR
Ga0318519_107200671	3300033290	Soil	MKNLLSLGLACGLLLSSKSIGADTGLMADSKKVSAVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072637

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences