Metagenome / Metatranscriptome Family F072624

Overview

Basic Information

• Family ID: F072624
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 121
• Average Sequence Length: 42 residues
• Representative Sequence: DLARLLGDAFTIELHAVEPRIDPPPDNPHIADVVLRARRR
• Number of Associated Samples: 107
• Number of Associated Scaffolds: 121

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 1.65 %
• % of genes near scaffold ends (potentially truncated): 95.87 %
• % of genes from short scaffolds (< 2000 bps): 93.39 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (61.983 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.661 % of family members)
• Environment Ontology (ENVO): Unclassified (30.579 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (41.322 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 7.35%
  β-sheet: 27.94%
  Coil/Unstructured: 64.71%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF13376	OmdA	4.96
PF01740	STAS	2.48
PF06197	DUF998	2.48
PF08241	Methyltransf_11	2.48
PF00171	Aldedh	2.48
PF07311	Dodecin	1.65
PF12697	Abhydrolase_6	1.65
PF00067	p450	1.65
PF01738	DLH	1.65
PF04075	F420H2_quin_red	1.65

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.48
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.48
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.48
COG3371	Uncharacterized membrane protein	Function unknown [S]	2.48
COG2124	Cytochrome P450	Defense mechanisms [V]	1.65
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	1.65
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.83
COG4300	Cadmium resistance protein CadD, predicted permease	Inorganic ion transport and metabolism [P]	0.83
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.98 %
Unclassified	root	N/A	38.02 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.98 %
Unclassified	root	N/A	38.02 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.98 %
Unclassified	root	N/A	38.02 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.76 %
Unclassified	root	N/A	38.02 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Unclassified	root	N/A	38.02 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.83 %
Unclassified	root	N/A	38.02 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.83 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	0.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %
Unclassified	root	N/A	38.02 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.57 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.83 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	0.83 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.83 %
Unclassified	root	N/A	38.02 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Saccharomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora	0.83 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	0.83 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.83 %
Unclassified	root	N/A	38.02 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Saccharomonospora saliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora saliphila	0.83 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	0.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.83 %
Unclassified	root	N/A	38.02 %
unclassified Actinomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces	0.83 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Saccharomonospora saliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora saliphila	0.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.83 %
Unclassified	root	N/A	38.02 %

Level 12

Name	Rank	Taxonomy	Distribution
Actinomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Saccharomonospora saliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora saliphila	0.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.83 %
Unclassified	root	N/A	38.02 %

Level 13

Name	Rank	Taxonomy	Distribution
Actinomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.57 %
Nitrolancea hollandica Lb	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Saccharomonospora saliphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora saliphila	0.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.83 %
Unclassified	root	N/A	38.02 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2189573001|GZR05M101DI7ZU	Not Available	520
3300004479|Ga0062595_101709668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593
3300005340|Ga0070689_101480053	All Organisms → cellular organisms → Bacteria	615
3300005529|Ga0070741_11404168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580
3300005539|Ga0068853_101086229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771
3300005564|Ga0070664_101363315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora saliphila	670
3300005993|Ga0080027_10357992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585
3300006046|Ga0066652_100610532	All Organisms → cellular organisms → Bacteria	1030
3300006048|Ga0075363_100540090	All Organisms → cellular organisms → Bacteria → Proteobacteria	695
3300006092|Ga0082021_1014398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3523

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.83%
Environmental	Environmental	88.43%
Host-Associated	Host-Associated	10.74%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.44%
Plants	Host-Associated → Plants	10.74%
Terrestrial	Environmental → Terrestrial	80.99%
Wastewater	Engineered → Wastewater	0.83%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.83%
Freshwater	Environmental → Aquatic → Freshwater	4.13%
Peat	Environmental → Terrestrial → Peat	2.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.79%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.83%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.65%
Roots	Host-Associated → Plants → Roots	1.65%
Sediment	Environmental → Aquatic → Sediment	3.31%
Soil	Environmental → Terrestrial → Soil	76.03%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.65%
Loam	Environmental → Terrestrial → Soil → Loam	1.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.05%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.13%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.83%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.65%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.65%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.65%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.65%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.83%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Wastewater Treatment Plant	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.65%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated
3300006092	Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore	Engineered

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD2_01962530	2189573001	Grass Soil	STILVPLLDNDFTVELHTVEARIDPPSGTPHISDVVLRARRR
Ga0062595_1017096682	3300004479	Soil	MSVHKLGGLLGDEFTVELHAVEPRIDPPPGTPHIADVVLRARRR*
Ga0070689_1014800531	3300005340	Switchgrass Rhizosphere	DYVGVDDLASLLDEDFTVELREVAPRIDPPPNTPHIADVILRARRR*
Ga0070741_114041681	3300005529	Surface Soil	GDDFAIERYGVEPRVDPPPGTPHVGDVVLRARCH*
Ga0068853_1010862292	3300005539	Corn Rhizosphere	PDEYVGADDLAPLLEADFAVELHAVEPRIDPPPGTPHVADVVLRARRR*
Ga0070664_1013633151	3300005564	Corn Rhizosphere	LFRLLGDDFTVELHAVEPRIDPPPGTPHIADVVLRARRR*
Ga0080027_103579921	3300005993	Prmafrost Soil	ADYVGADDLGQLLGDDFTVELHGVESRIDPPPDNPYIADIVLRARRR*
Ga0066652_1006105322	3300006046	Soil	LLGADFTVELHAVEPRIDPPRDTPHIADVILRARHH*
Ga0075363_1005400903	3300006048	Populus Endosphere	QLLGADFTVELHAVEPRIDPPPGNPHIADVVLRARRR*
Ga0082021_10143986	3300006092	Wastewater Treatment Plant	ALLATRDDFTVELDVVEPRVDPPGGNPHIADVVVRARRR*
Ga0075015_1007381902	3300006102	Watersheds	PADYVGADDLEQLLGADFVIELHAVEPRIDPPPGTPHIADIVLRARRH*
Ga0075014_1008237191	3300006174	Watersheds	LLGDDFTVELDVVEPRVDPPPHTPHIADVVLRARRG*
Ga0079222_106129953	3300006755	Agricultural Soil	LAPLLAADFTIELHAAEPRIDPPPGTPHIADVVLRARRR*
Ga0066660_104131811	3300006800	Soil	MKSHGVDRADYIGAADLGQLLGEDFTIELHAVEARIDPPPGTTRVADVVVRARRH*
Ga0079220_111184321	3300006806	Agricultural Soil	RLLGGEFTIELHAVQPRIDPPPDHRDIADVVLRARRR*
Ga0066709_1023109321	3300009137	Grasslands Soil	RLLGDDFTIEMHTVEPRIDPPPGTPHIADVVLRARHR*
Ga0114129_108634611	3300009147	Populus Rhizosphere	VDPADYFGDDDLGRLLSDDFTVERHAVEPRIYPPPGTPHIADIILRARRR*
Ga0105248_109330642	3300009177	Switchgrass Rhizosphere	LDDDFTVERHAIEPRIDPPPGTPHVADVVLRARRR*
Ga0116216_101014841	3300009698	Peatlands Soil	RLLGDDFTIELRAVQPRIDPPPDHPHIADVVLRARRR*
Ga0126306_101579741	3300010166	Serpentine Soil	VGADYLGRLLSDDFTIEVHAVEPRIDPPPDTPHSADVVLRARHR*
Ga0126370_112593951	3300010358	Tropical Forest Soil	FDADDLARLLGDAFTIELHAVEPRLDAPPDNPHIADVVLRARRR*
Ga0126370_125415142	3300010358	Tropical Forest Soil	DYVDAGDLARLLGGHFTIGLHAVEPRIDPPPDTPHIADVVLRAWRR*
Ga0134128_110703501	3300010373	Terrestrial Soil	FGADDLARLLDDDFTVERHAIEPRIDPPPGTPHVADVVLRARRR*
Ga0126383_133223901	3300010398	Tropical Forest Soil	DYVGADDLARLLGDAFTVELHAVEPRIDPPPGTPHIADIVLRARRR*
Ga0126347_14040911	3300010867	Boreal Forest Soil	ADYIEADGLCQLLGDEFTVELFAVEPRIDPPPDNPHVADVVLRARRR*
Ga0137384_113244721	3300012357	Vadose Zone Soil	DYFGADDLGRLLGDDCTIEMHTVEPRIDPPPGTPHIADVVLRARHR*
Ga0164298_103386223	3300012955	Soil	GADDLVPLLAGDFTVELHAVEPRIDPPPGTPHIADVVLRARRR*
Ga0164301_101472451	3300012960	Soil	PADYVGADDLVPLLAGDFTVELHAVEPRIDPPPGTPHIADVVLRARRR*
Ga0134076_102996192	3300012976	Grasslands Soil	DLGRLLGEDFAVELHAVEARIDPPPGTPHIADVVLRARRH*
Ga0164308_101035713	3300012985	Soil	DYVGADELRELLVADFTIELDVVEPRLDPPPGTPHVADIVLRARRR*
Ga0134081_101613652	3300014150	Grasslands Soil	IDPADYVGADDLGRLLGNDFRVELRTVEPRLDPPPGTSHIADIILRARRS*
Ga0075327_12539982	3300014272	Natural And Restored Wetlands	GDDFTVERHAVEARIDPPPGAPHIADVVLRARRR*
Ga0181522_103934302	3300014657	Bog	SQGIDPADYVDADDLGRLLADEFTIELRAVKPRIDPPPDNPHIADVVLRARRR*
Ga0181519_109023961	3300014658	Bog	LLGDDFTVDLHAVEPRIDPPPEGVHIADVVLRARRR*
Ga0167662_10465291	3300015082	Glacier Forefield Soil	VDPADYVDADDLRPLLGDEFAVELHAVEPRIDPPPDNPHIADVVLRARRR*
Ga0134072_101363593	3300015357	Grasslands Soil	DLGRLLGNDFRVELRTVEPRLDPPPGTSHIADIILRARRS*
Ga0132256_1009320061	3300015372	Arabidopsis Rhizosphere	YVSADDLHRLLGEDFTVELHAVEPRIDPPPDNPHIADVVLRARRR*
Ga0132255_1037454882	3300015374	Arabidopsis Rhizosphere	RELLVADFTIELDVVEPRLDPPPGTPHVADIVLRARRR*
Ga0132255_1043835851	3300015374	Arabidopsis Rhizosphere	LATLLGDDFTVELHAAEPRVDPPPGTPHIADVVLRARRR*
Ga0182041_105143552	3300016294	Soil	DLARLLGDAFTIELHAIEPRIDPPPDNPHIADVVLRARRR
Ga0182033_115395721	3300016319	Soil	LARLLVGAFTIERHAAEPRIDPPPDAPHIAEVVLRARRR
Ga0182034_107162832	3300016371	Soil	DYVDADDLARLLGDAFTIELHAVEPRIDPPPDNPHIADVVLRARRR
Ga0182040_112779161	3300016387	Soil	DPADYFGIDDVAHVLADDFTIEFHSVEARVDPPPGTPHIADAVLRARRH
Ga0187818_103510601	3300017823	Freshwater Sediment	PADYVDADALGRLLGGKFTIELHAVQPRIDPPPDTPHIADVVLRARRR
Ga0187776_102148431	3300017966	Tropical Peatland	DLARLLGDAFTIELHAAGPRIDPPPDNPHIADVVLRARRR
Ga0187781_105896462	3300017972	Tropical Peatland	DLARLLDGDFTIELHATGPRIDPPPDTPHIADVVLRARRHCR
Ga0187781_114765951	3300017972	Tropical Peatland	DPADYVDADDLSRLLGGQFTIELHAVQPRIDPPPDAPHIADVVLRARRR
Ga0187782_102868952	3300017975	Tropical Peatland	MKDRGARLLGEAFTIELLAVEPRIGPPPDNPHVADVVLRARRR
Ga0187815_101023913	3300018001	Freshwater Sediment	LGDEFTIELHAVQPRIDPPPDNPHIADVVLRARRR
Ga0187883_100492671	3300018037	Peatland	LISDDFTVELHSVEPRIDPPPDNPHIADVVLRARRR
Ga0187765_108742572	3300018060	Tropical Peatland	LLGGQFTIELHAVQPRIDPPPDHRHIADVVLRARRR
Ga0184612_104562992	3300018078	Groundwater Sediment	FGDNDLGRLLGDDFTVERHAVEPRIDPPTGTPDITDIILRARRR
Ga0184625_105479361	3300018081	Groundwater Sediment	DDLGRLLGDDFTVERHAVEPRIDPPPGTPHIADIILRARRR
Ga0187768_10522941	3300020150	Tropical Peatland	VDADDLGRLLSDEFTIELHAVEPRIDPPPDTPHIADVVLRARRR
Ga0210388_110009131	3300021181	Soil	AAYVGVDDLRALLGGDFDVELHAIEPRTDPPAGTPHVADVVLRARRRA
Ga0213882_101521832	3300021362	Exposed Rock	LARLLGGAFTIELHAVEPRIDPPPDNPHIADVVLRARRRGD
Ga0213881_101703302	3300021374	Exposed Rock	RLLGDEFTIELHAVQPRIDPPPDNPHIADVVLRARRR
Ga0213874_104415912	3300021377	Plant Roots	DYVDADDLARLLGDVFTIELHVVEPRIDPPPDHPDIADIVLRARRR
Ga0210387_106894222	3300021405	Soil	YVGAEDLYRLLGDDFTVELNVVEPRIDPPPDAPHIADAVLRARRR
Ga0126371_138471511	3300021560	Tropical Forest Soil	DYVDADDLGRLLSGQFTVELHAVEPRIDPPPDNPHIADVVLRARRC
Ga0207643_110557331	3300025908	Miscanthus Rhizosphere	PADYVLADDLARLLDEAFTVELHAVDARIDPPPGTPHIADVVLRARRR
Ga0207646_113065191	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GRLLSDDFTVELHAVEPRIDPPPGTPHIADVVLRARRR
Ga0207687_114244372	3300025927	Miscanthus Rhizosphere	AKGHDPADYVAIEDLTRLLGDDFTIGRLVTEPRIDPPPDNPHVADVVLLARRR
Ga0207686_115286682	3300025934	Miscanthus Rhizosphere	DPADYVGADDLIQLLHDNFTLELHAVSPRIDPPPDTPHIADVVLRGRRR
Ga0209474_105742202	3300026550	Soil	GADDLVDLLGDDFTVELHAVEPRIDPPPGTPHIADIVVRARRH
Ga0179587_110347741	3300026557	Vadose Zone Soil	NAEDLALLLGDAFTIEWHAAEPRIDPPPDNPHTADVVLRARRR
Ga0214469_12099842	3300027636	Soil	ADYVGADDLGRLLGDDFMVELHAVEPRVDPPAGSPHIADVVVLGRRR
Ga0311355_115531002	3300030580	Palsa	LGDEFTIELHAVEPRIDPPADSPDIADVVLRARRG
Ga0268386_103483853	3300030619	Soil	VGADDLDRLLGDDFTVELHAVEPRIDPPAGSPHIADVVLRARRR
Ga0310039_101631761	3300030706	Peatlands Soil	ADYVDADDLARLLGEEFTIELHAVQPRIDPPPDNPHIADVVLRARRR
Ga0302325_107071812	3300031234	Palsa	DYVSADDLGRLLGDDFTVEVHAVEPRINPPADNPHAADVVLRARRR
Ga0265327_102736321	3300031251	Rhizosphere	LADDFTLELDVVEPRIDPPPDTPHIADVVLRARRR
Ga0318534_102527033	3300031544	Soil	IGRLLGDAFTIELHAVQPRIDPPADTPHIADVVLRARRR
Ga0318528_106990881	3300031561	Soil	YIGADDLVQFLDDFTVELHAVEPRIDPPPDTPHVADVVLRAQRR
Ga0318573_101958662	3300031564	Soil	VSGGAFTIELHAAEPRIDPPPDTPHIADVVLRARRR
Ga0318573_106425471	3300031564	Soil	VDADDLGRLLGDAFTIELHAVEPRIDPPPDNPHIADIVLRARRR
Ga0318555_101321963	3300031640	Soil	ARLLGGAFTIELHAAEPRIDPPPDTPHIADVVLRARRR
Ga0318572_101435951	3300031681	Soil	ADDLARLLGDAFTIELHEVRPRIDPPPDNPHIDDIVLRARRR
Ga0306918_109206162	3300031744	Soil	LGRLLGGQFTIELHAAQPRIDPPPDNPHIADVVLRARRR
Ga0306918_110827001	3300031744	Soil	YFDADDLARLLGDAFTIELHAIEPRIDPPPDNPHIADVVLRARRR
Ga0318492_103172541	3300031748	Soil	LGRLLGDAFTIELHAVQPRIDPPADTPHIADVVLRARRR
Ga0307477_104399052	3300031753	Hardwood Forest Soil	DYVDADDLRQLLGDDFTVELDTVEPRIDPPPDTPHIADVVLRARRR
Ga0318554_103246131	3300031765	Soil	DYVDADDLGRLLGGEFTIELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0318526_100940122	3300031769	Soil	DYVDADGLARLLGGAFTIELHAAEPRIDPPPDTPHIADVVLRARRR
Ga0318521_102005102	3300031770	Soil	RRLLGGEFTLELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0318498_102132751	3300031778	Soil	DLARLLGDAFTIELHAVEPRIDPPPDNPHIADVVLRARRR
Ga0306925_110379152	3300031890	Soil	LGRLLGDEFTIELHAVQPRINPPPDHRDIADVVLRARRR
Ga0318551_105283091	3300031896	Soil	RLLGDAFTIELHAVQPRIDPPPDNPHIADVVLRARRR
Ga0318551_109415242	3300031896	Soil	VDPADYVDVDDLGRLLGDAFTIERHAVQPRIYPPPDNPHIADVVLRARRR
Ga0318520_102940771	3300031897	Soil	VDPADYVDADDLARLLGEEFTIELHAVEPRIDPPPDHRHIADIVLRARRH
Ga0306923_112190821	3300031910	Soil	LGDAFTIELHAIEPRIDPPPDNPHIADVVLRARRR
Ga0306921_119943612	3300031912	Soil	LDDEFAIELHTIEPRIDPPPGNPHFADVVIRARRR
Ga0306921_124098562	3300031912	Soil	ADYVDADDLRRLLGGEFMIELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0306921_127739582	3300031912	Soil	LLGDAFTIERHAVQPRIYPPPDNPHIADVVLRARRR
Ga0307479_120694161	3300031962	Hardwood Forest Soil	RLLSDDFTVELHAVEPRIDPPPGTPHVADVVLCARRR
Ga0318563_105804262	3300032009	Soil	VGDLLLLLGGQFTVELHAIEPRIDPPPGNPHIADVIVRARRR
Ga0318569_102293371	3300032010	Soil	LVQFLDDFTVELHAVEPRIDPPPDTPHVADVVLRAQRR
Ga0318575_101787622	3300032055	Soil	LGEEFTIELHAVEPRIDPPPDHRHIADIVLRARRH
Ga0318505_104118321	3300032060	Soil	RLLGDAFTIELHAVQPRIHPPADTPHIADVVLRARRR
Ga0318510_101649882	3300032064	Soil	VDADDLRRLLGGEFMIELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0326721_106036102	3300032080	Soil	GAEDLVSLLGDDFTVESHAVEPRLDPPPGTPHVADVVLRARRR
Ga0318525_107026731	3300032089	Soil	VDADGLARLLGGAFTIELHAAEPRIDPPPDTPHIADVVLRARRR
Ga0318577_103130472	3300032091	Soil	RGLLSDDFMVELHAIEPRVDPPPDTPHIADVVLRARRR
Ga0307472_1020813292	3300032205	Hardwood Forest Soil	FVAQQPDYVDADDLGRLLGDEFTIDRHTAEPRIDPPPDTAHIGDIVLRARRR
Ga0306920_1024831422	3300032261	Soil	VDADDLARLLGDAFTIELHAVEPRIDPPPDNPHIADVVLRARRR
Ga0306920_1028446632	3300032261	Soil	ARLLGDAFTIELHAVEPRVDPPPDHPHIAGVVLRARRR
Ga0306920_1042505191	3300032261	Soil	DLRRLLAEDFTVELDAVEPRVDPPPDTSHMADVVLRARGR
Ga0335085_100170446	3300032770	Soil	MSMRRGSPVRLLGDAFTIELHAVEPRFDPPPDSPHIAGVVLRARRG
Ga0335085_116942411	3300032770	Soil	VDPADYVDADDLGRLLGDEFTIELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0335085_120538932	3300032770	Soil	LGGEFTIELRAVQPRIDPPPDHRDIADVVLRARRR
Ga0335082_100657751	3300032782	Soil	LLGGEFTIELRAVQPRIDPPPDHRDIADVVLRARRR
Ga0335081_110671782	3300032892	Soil	DRLLGDAFTIELHAVEPRIDPPPDNPHIADLVLRARRR
Ga0335081_110863071	3300032892	Soil	VDPADYFDADDLARLLGDAFTIELHAAEPRIDPPPDNPHIADVVLRARRR
Ga0335072_103376611	3300032898	Soil	GADDVVRLLGDGFVLERHAAEPRTDPPPGTPHIADVVVRARRR
Ga0335072_111810201	3300032898	Soil	VSGDFTVEQHSVQERIDPPPDTPHVADVVLRARRR
Ga0335073_101814344	3300033134	Soil	LLGDDFTVELHAVEPRIDPPPDTPHIVDVVLRARHR
Ga0272431_100675671	3300033181	Rock	MLAEEFTVELHAVEARIDPPPDNPHVADVVLRARRR
Ga0310914_103839312	3300033289	Soil	ARLLVGAFTIERHAAEPRIDPPPDTPHIAEVVLRARRR
Ga0318519_103447861	3300033290	Soil	DYVDADDLRRLLGGEFTLELHAVQPRIDPPPDHRDIADVVLRARRR
Ga0247830_112129102	3300033551	Soil	DDVARVLGEGFAIELHAVEPRLDPPPGTPHIADIVLRARRR
Ga0371489_0007254_11030_11137	3300033755	Peat Soil	LGDDFTVELHAVEPRIDPPPDNPHIADVVLRARRR