Metagenome / Metatranscriptome Family F072621

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072621
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	53 residues
Representative Sequence	MAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD
Number of Associated Samples	92
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.82 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	72.73 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.769 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (33.058 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.934 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.98% β-sheet: 0.00% Coil/Unstructured: 58.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01161	PBP	6.61
PF00034	Cytochrom_C	3.31
PF00383	dCMP_cyt_deam_1	2.48
PF00011	HSP20	2.48
PF13442	Cytochrome_CBB3	2.48
PF13683	rve_3	1.65
PF03006	HlyIII	1.65
PF06723	MreB_Mbl	1.65
PF02566	OsmC	1.65
PF04542	Sigma70_r2	1.65
PF00903	Glyoxalase	1.65
PF02586	SRAP	0.83
PF01370	Epimerase	0.83
PF07238	PilZ	0.83
PF12728	HTH_17	0.83
PF07110	EthD	0.83
PF00144	Beta-lactamase	0.83
PF02803	Thiolase_C	0.83
PF05592	Bac_rhamnosid	0.83
PF13229	Beta_helix	0.83
PF09723	Zn-ribbon_8	0.83
PF01515	PTA_PTB	0.83
PF04545	Sigma70_r4	0.83
PF13378	MR_MLE_C	0.83
PF13174	TPR_6	0.83
PF00970	FAD_binding_6	0.83
PF13620	CarboxypepD_reg	0.83
PF11645	PDDEXK_5	0.83
PF01951	Archease	0.83
PF00571	CBS	0.83
PF10546	P63C	0.83
PF08751	TrwC	0.83
PF04055	Radical_SAM	0.83
PF01455	HupF_HypC	0.83
PF14907	NTP_transf_5	0.83
PF00582	Usp	0.83
PF00825	Ribonuclease_P	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	6.61
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.48
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.65
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.65
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.65
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.65
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	1.65
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.65
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	1.65
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.65
COG1371	Archease, activates RNA ligation by RtcB (tRNA splicing)	Translation, ribosomal structure and biogenesis [J]	0.83
COG0594	RNase P protein component	Translation, ribosomal structure and biogenesis [J]	0.83
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0298	Hydrogenase maturation factor HybG, HypC/HupF family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0280	Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase)	Energy production and conversion [C]	0.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.83
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.83
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.83
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.60 %
Unclassified	root	N/A	31.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.77 %
Unclassified	root	N/A	31.40 %
Viruses	superkingdom	All Organisms → Viruses	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.77 %
Unclassified	root	N/A	31.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.36 %
Unclassified	root	N/A	31.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.48 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.48 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.83 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.83 %
Acidobacteriales bacterium 13_1_40CM_3_55_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.65 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.83 %
Acidobacteriales bacterium 13_1_40CM_3_55_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	0.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04YVUSQ	Not Available	507	Open in IMG/M
2140918007\|ConsensusfromContig30820	All Organisms → cellular organisms → Bacteria → Acidobacteria	910	Open in IMG/M
2140918008\|ConsensusfromContig196142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300000567\|JGI12270J11330_10075138	Not Available	1637	Open in IMG/M
3300001356\|JGI12269J14319_10099669	Not Available	1432	Open in IMG/M
3300003218\|JGI26339J46600_10004615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4062	Open in IMG/M
3300004152\|Ga0062386_101642617	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300004473\|Ga0068919_1390857	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300004610\|Ga0068927_1305366	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300004611\|Ga0068925_1365383	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300005434\|Ga0070709_10093380	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300005439\|Ga0070711_100034191	All Organisms → cellular organisms → Bacteria	3390	Open in IMG/M
3300005518\|Ga0070699_100022772	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5398	Open in IMG/M
3300005938\|Ga0066795_10176720	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300005994\|Ga0066789_10391000	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	581	Open in IMG/M
3300006052\|Ga0075029_100001821	All Organisms → cellular organisms → Bacteria → Acidobacteria	12138	Open in IMG/M
3300006055\|Ga0097691_1020395	All Organisms → cellular organisms → Bacteria	2877	Open in IMG/M
3300006086\|Ga0075019_10138957	All Organisms → Viruses → Predicted Viral	1414	Open in IMG/M
3300006102\|Ga0075015_101049004	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300006162\|Ga0075030_100110377	All Organisms → cellular organisms → Bacteria	2239	Open in IMG/M
3300006174\|Ga0075014_100927214	Not Available	523	Open in IMG/M
3300006864\|Ga0066797_1159603	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300009029\|Ga0066793_10129046	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300009029\|Ga0066793_10209483	Not Available	1134	Open in IMG/M
3300009029\|Ga0066793_10416334	Not Available	771	Open in IMG/M
3300009029\|Ga0066793_10748337	Not Available	555	Open in IMG/M
3300009038\|Ga0099829_10819871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300009088\|Ga0099830_10276090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1336	Open in IMG/M
3300009518\|Ga0116128_1000264	All Organisms → cellular organisms → Bacteria	32135	Open in IMG/M
3300009520\|Ga0116214_1212333	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300009522\|Ga0116218_1412550	Not Available	603	Open in IMG/M
3300009523\|Ga0116221_1004919	All Organisms → cellular organisms → Bacteria → Acidobacteria	8400	Open in IMG/M
3300009524\|Ga0116225_1223186	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300009525\|Ga0116220_10124427	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300009639\|Ga0116122_1254648	Not Available	543	Open in IMG/M
3300009641\|Ga0116120_1131172	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300009683\|Ga0116224_10400096	Not Available	653	Open in IMG/M
3300009683\|Ga0116224_10614435	Not Available	520	Open in IMG/M
3300009824\|Ga0116219_10015741	All Organisms → cellular organisms → Bacteria	4764	Open in IMG/M
3300009824\|Ga0116219_10083921	Not Available	1864	Open in IMG/M
3300009824\|Ga0116219_10462690	Not Available	704	Open in IMG/M
3300009824\|Ga0116219_10773879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300009839\|Ga0116223_10009114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7735	Open in IMG/M
3300009839\|Ga0116223_10501246	Not Available	707	Open in IMG/M
3300010341\|Ga0074045_10012597	All Organisms → cellular organisms → Bacteria	6930	Open in IMG/M
3300010379\|Ga0136449_100018392	All Organisms → cellular organisms → Bacteria	18087	Open in IMG/M
3300010379\|Ga0136449_100643112	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300010379\|Ga0136449_100995200	All Organisms → cellular organisms → Bacteria → Acidobacteria	1350	Open in IMG/M
3300010379\|Ga0136449_101080468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300010379\|Ga0136449_102303094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300011061\|Ga0138534_1093261	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300011075\|Ga0138555_1160339	Not Available	548	Open in IMG/M
3300011081\|Ga0138575_1126247	Not Available	504	Open in IMG/M
3300011089\|Ga0138573_1186874	Not Available	557	Open in IMG/M
3300011270\|Ga0137391_10180211	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300011305\|Ga0138532_1122111	Not Available	549	Open in IMG/M
3300012096\|Ga0137389_10652067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_1_40CM_3_55_5	905	Open in IMG/M
3300012201\|Ga0137365_10975830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300012207\|Ga0137381_11033275	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300012210\|Ga0137378_10958357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300012350\|Ga0137372_10073421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2936	Open in IMG/M
3300012931\|Ga0153915_10149903	All Organisms → cellular organisms → Bacteria	2526	Open in IMG/M
3300012931\|Ga0153915_11935926	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300014164\|Ga0181532_10005188	All Organisms → cellular organisms → Bacteria	11147	Open in IMG/M
3300014490\|Ga0182010_10000977	All Organisms → cellular organisms → Bacteria	15630	Open in IMG/M
3300016702\|Ga0181511_1436168	Not Available	500	Open in IMG/M
3300016750\|Ga0181505_10939951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300017822\|Ga0187802_10022016	All Organisms → cellular organisms → Bacteria	2201	Open in IMG/M
3300017822\|Ga0187802_10167340	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300017823\|Ga0187818_10015761	All Organisms → cellular organisms → Bacteria	3230	Open in IMG/M
3300017823\|Ga0187818_10032157	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300017823\|Ga0187818_10152552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300017823\|Ga0187818_10554467	Not Available	518	Open in IMG/M
3300017925\|Ga0187856_1010870	All Organisms → cellular organisms → Bacteria	5228	Open in IMG/M
3300017927\|Ga0187824_10356251	Not Available	529	Open in IMG/M
3300017930\|Ga0187825_10318620	Not Available	583	Open in IMG/M
3300017933\|Ga0187801_10128597	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300017934\|Ga0187803_10014229	All Organisms → cellular organisms → Bacteria	3177	Open in IMG/M
3300017934\|Ga0187803_10098205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1150	Open in IMG/M
3300017935\|Ga0187848_10011261	All Organisms → cellular organisms → Bacteria	5159	Open in IMG/M
3300017943\|Ga0187819_10005344	All Organisms → cellular organisms → Bacteria	7060	Open in IMG/M
3300017943\|Ga0187819_10675811	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300017955\|Ga0187817_10096833	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300017955\|Ga0187817_10334641	Not Available	965	Open in IMG/M
3300017996\|Ga0187891_1319585	Not Available	503	Open in IMG/M
3300017998\|Ga0187870_1028472	All Organisms → cellular organisms → Bacteria	2635	Open in IMG/M
3300018004\|Ga0187865_1000653	All Organisms → cellular organisms → Bacteria → Acidobacteria	46186	Open in IMG/M
3300018006\|Ga0187804_10079631	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300018006\|Ga0187804_10429403	Not Available	588	Open in IMG/M
3300018012\|Ga0187810_10278573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300018012\|Ga0187810_10378632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300018017\|Ga0187872_10369119	Not Available	613	Open in IMG/M
3300018024\|Ga0187881_10444396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300018057\|Ga0187858_10018564	All Organisms → cellular organisms → Bacteria	5502	Open in IMG/M
3300018057\|Ga0187858_10229845	All Organisms → cellular organisms → Bacteria → Acidobacteria	1198	Open in IMG/M
3300025427\|Ga0208077_1038160	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300025480\|Ga0208688_1027881	Not Available	1377	Open in IMG/M
3300026514\|Ga0257168_1142717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300027568\|Ga0208042_1150522	Not Available	583	Open in IMG/M
3300027641\|Ga0208827_1001624	All Organisms → cellular organisms → Bacteria	9641	Open in IMG/M
3300027767\|Ga0209655_10059475	Not Available	1273	Open in IMG/M
3300027846\|Ga0209180_10156049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1316	Open in IMG/M
3300027854\|Ga0209517_10119913	All Organisms → cellular organisms → Bacteria → Acidobacteria	1733	Open in IMG/M
3300027854\|Ga0209517_10308047	Not Available	922	Open in IMG/M
3300027854\|Ga0209517_10676607	Not Available	535	Open in IMG/M
3300027862\|Ga0209701_10116789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1655	Open in IMG/M
3300027862\|Ga0209701_10255932	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300027898\|Ga0209067_10053440	All Organisms → cellular organisms → Bacteria → Acidobacteria	2063	Open in IMG/M
3300027905\|Ga0209415_10023096	Not Available	9453	Open in IMG/M
3300027905\|Ga0209415_10445785	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300027911\|Ga0209698_10133601	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300028800\|Ga0265338_10821330	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300030707\|Ga0310038_10404501	Not Available	593	Open in IMG/M
3300031235\|Ga0265330_10526730	Not Available	504	Open in IMG/M
3300031249\|Ga0265339_10145463	All Organisms → cellular organisms → Bacteria → Acidobacteria	1203	Open in IMG/M
3300032160\|Ga0311301_10617345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1556	Open in IMG/M
3300032160\|Ga0311301_12103237	Not Available	653	Open in IMG/M
3300032893\|Ga0335069_10064596	All Organisms → cellular organisms → Bacteria → Acidobacteria	4734	Open in IMG/M
3300033433\|Ga0326726_11580925	Not Available	638	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.52%
Host-Associated	Host-Associated	2.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.68%
Aquatic	Environmental → Aquatic	38.84%
Plants	Host-Associated → Plants	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.85%
Freshwater	Environmental → Aquatic → Freshwater	33.06%
Sediment	Environmental → Aquatic → Sediment	5.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.48%
Peat	Environmental → Terrestrial → Peat	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.11%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.06%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.79%
Loam	Environmental → Terrestrial → Soil → Loam	2.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.15%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	15.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.40%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	33.06%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	15.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.09%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.31%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	3.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.48%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.65%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004473	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004474	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004610	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004611	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011061	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011075	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011081	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011305	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_01767510	2070309004	Green-Waste Compost	MAKKRTKADKALRQADRAEKRTESRPEQTPKKPREDFSQGAARIVREATGQS
A_all_C_02829840	2140918007	Soil	MSEKRTKSDKALRQADQVEKRTEARPEQSPSKRKPRENFSQGAVRIVREATEKP
Bog_all_C_00334910	2140918008	Soil	MATKRTKADKAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATEQK
JGI12270J11330_100751383	3300000567	Peatlands Soil	MAKKRTKVDKAQRQANQLEKRVDTRPEQTPKKPQASEDFSQVTARIVTRKS*
JGI12270J11330_100933331	3300000567	Peatlands Soil	MAKKRTKADKAQRQANQLETRVDTRPEQTPKKRSPARTSGKPLPGIVREATKD*
JGI12269J14319_100996693	3300001356	Peatlands Soil	APLWQAVGMAKKRTKVDKAQRQANQLEKRVDTRPEQTPKKPQASEDFSQVTARIVTRKS*
JGI26339J46600_100046155	3300003218	Bog Forest Soil	MAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD*
Ga0062386_1016426171	3300004152	Bog Forest Soil	KADKAERQSNQLEKRADTRPEQTPKKPQAREDFSQVAARIGTRKS*
Ga0068919_13908573	3300004473	Peatlands Soil	MGRSEKRTKSDEGLRQADQVEKRTEARPEQNPKKRKPREDFRQGAARIVREAT
Ga0068968_14683093	3300004474	Peatlands Soil	MGRSEKRTKSDEGLRQADQVEKRPEQNPNRRKPREDFGQGAARIVREATENPNRLVLWPCACLDPLL*
Ga0068927_13053661	3300004610	Peatlands Soil	MAKKRSKLDRLQRQSDQLEKRADTRPEQTPKKRKPHEEFRQAAVRIVREETGNHTMERIF
Ga0068925_13653833	3300004611	Peatlands Soil	MGRSEKRTKSDEGLRQADQVEKRPEQNPNRRKPREDFGQGAAR
Ga0070709_100933804	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDMSEKRTKSDKALRQADQVEKRTEARPEQTPKKPKSGEDISQAAVGISTDETKKP*
Ga0070711_1000341914	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEMSEKRTKSDKALRQADQVEKRTEARPEQTPKKPKSGEDISQAAVGISTDETKKP*
Ga0070699_1000227723	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAKKRTKLDRSQRQANQLEKRADIRPEQTPKNRKREDVNQAASRIVREITRDK*
Ga0066795_101767201	3300005938	Soil	DKAQRQANQLEKRADTHPEQTPKKPAAREDFSLAAARIVREATEQK*
Ga0066789_103910002	3300005994	Soil	MSEKRTKSDKALRQADQVEKRTEARPEQNPNKRKPRQDFSQGAARIVREATEKP*
Ga0075029_10000182116	3300006052	Watersheds	MSEKRTRSDQALRQADQAEKRTEARPEQDSKKRKPGEDFSQAAARIVREATEKL*
Ga0097691_10203952	3300006055	Arctic Peat Soil	MANKRTKADNAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATEQK*
Ga0075019_101389573	3300006086	Watersheds	MGMSEKRTRSDQALRQADQAEKRTEARPEQDSKKRKPGEDFSQAAARIVREATEKL*
Ga0075015_1010490041	3300006102	Watersheds	VGMAKKRTKFDKAQRQANQLEKRTDTRPDQTPKKRVSGEDFSQATVRIVKEATEGH*
Ga0075030_1001103775	3300006162	Watersheds	MAKKRTKAHKALRQADHAEKRTEARPEQTPKKGKPDEDFSQAAARFIREATEGTK*
Ga0075014_1009272141	3300006174	Watersheds	MAKKRTKADKAQRQANQLEKRADTRPEQTPKKPQASEDFSQVAARIVTRKS*
Ga0066797_11596031	3300006864	Soil	MAKKRTKADKAQRQANQLEKRADTHPEQTPKKPAAREDFSQAAARIVREATEQK*
Ga0066793_101290461	3300009029	Prmafrost Soil	NAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATAQK*
Ga0066793_102094832	3300009029	Prmafrost Soil	FAPLWQAVGMAKKRTKADKAQRQANQLENRADTRPEQTPKKPQASEDFSQVAARIVTRKS
Ga0066793_104163341	3300009029	Prmafrost Soil	MGMSEKRTKSDKALRQADQVEKRTEARPEQTPKKRKPPEDFSQGAARIVREATEKP*
Ga0066793_107483371	3300009029	Prmafrost Soil	MANKRTKADKAQRQANQLEKRADTHPEQTPKKPAARIVREATEQK*
Ga0099829_108198711	3300009038	Vadose Zone Soil	MAKKRTKADNAQRQADELEKKADTRPEQTPKKGTPREDVSQATARIVKQTTENL*
Ga0099830_102760902	3300009088	Vadose Zone Soil	MAKKRTKVDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQGAARIVREATKD*
Ga0116128_100026427	3300009518	Peatland	MARKRTKADKEQRQANQLEKRADTRPEQTPKKPQAGEDFSQVAARIVTRKS*
Ga0116214_12123331	3300009520	Peatlands Soil	MAKKRTKFDKSQRQANQLEKRVDTRPEQTPKKRAPQGYFSQVGVRLVKEAAENR*
Ga0116218_14125501	3300009522	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEARPEQTPKKRKPGEDFSQAAPQIVREATEKP*
Ga0116221_10049196	3300009523	Peatlands Soil	MATKRTKADRGQRQANHLEEKSDIRPEQTPKKPKPSEDFNQAAVRIIREATENK*
Ga0116225_12231861	3300009524	Peatlands Soil	MAKKRTKADKEQRQANQLEKRVDTHPEQTTKKPQASEDFSQVAARIVTRKS*
Ga0116220_101244272	3300009525	Peatlands Soil	MAKKRTKFDKSQRQANQLEKRVDTRPEQTPKKRAPQGDFSQVGVRLVKEAAENR*
Ga0116122_12546482	3300009639	Peatland	SDKAQRQANQLEKRVDTRPKQTPKKPQASEDLSQVAARIVMRKS*
Ga0116120_11311722	3300009641	Peatland	LWETVGMAKKRTKADRAQRQADQLEKSTDTRPEQTPTKPKTREDFSQAAARIVREATENK
Ga0116224_104000962	3300009683	Peatlands Soil	MAKKRTKADKALRQANHAEKRTEARPEQTPKKGKPDEDFSQAAARIVREATEGTK*
Ga0116224_106144351	3300009683	Peatlands Soil	MANKRTKADKAQRQANQLETRADTRPEQTPKKRKYSEDFSQAAARIVKGATKD*
Ga0116219_100157412	3300009824	Peatlands Soil	MAKKRTKSDKSQRQANQLEKRVDTRPEQTPKKRAPQGDFSQVGVRLVKEAAENR*
Ga0116219_100839212	3300009824	Peatlands Soil	MAKKRTKTDNAQRQANQLEKRADTRPEQTPKKPQASEDFSQVAARIVTRKS*
Ga0116219_104626903	3300009824	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEARPEQTPKKRKPGEDFSQAAPQIVREATE
Ga0116219_107738792	3300009824	Peatlands Soil	NKRTKADKAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATEQK*
Ga0116223_1000911410	3300009839	Peatlands Soil	MANKRTKADKAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATEQK*
Ga0116223_105012461	3300009839	Peatlands Soil	TGGMAKKCTKADKALRQANHAEKRTEARPEQTPKKGKPDEDFSQAAARIVREATEGTK*
Ga0074045_100125974	3300010341	Bog Forest Soil	MAQKRTKTDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQTAARIVREATKD*
Ga0136449_1000183925	3300010379	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKPTQARPEQTPKKRKPGEDFSQAAPQIVREATEKP*
Ga0136449_1006431122	3300010379	Peatlands Soil	MAKKRTKFDKSQRQANQLEKRVDTRPEQTPKKRAPQGDFSQAAVRLVKEAAENR*
Ga0136449_1009952002	3300010379	Peatlands Soil	MAKKRTKLDKSQRQANQLEKRADTRPEQTPKKRAPREDFSQAAVPETRE*
Ga0136449_1010804684	3300010379	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEERPEQTPKKPNPGEDFSQAAARIVREATEKL*
Ga0136449_1023030941	3300010379	Peatlands Soil	MAKKRTKTDKAQRQANQLETRADTRPEQTPKKRKPSEDFRQAAARIVREATKD*
Ga0138534_10932611	3300011061	Peatlands Soil	MAKKRSKLDRLQRQSDQLEKRADTRPEQTPKKRKPHEEFRQAAVRIVREETGNHTMER
Ga0138555_11603392	3300011075	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEERPEQTPKKPNPGEDFSQAAARIVREATEQK*
Ga0138575_11262471	3300011081	Peatlands Soil	MSEKRTKSDKALRQADQVEKRTEERPEQTPKKPNPGEDFSQAAARIVREATEKL*
Ga0138573_11868742	3300011089	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEERPEQTPKKPNPGEDFSQAAARIVREATERP*
Ga0137391_101802113	3300011270	Vadose Zone Soil	MAKKRTKVDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQGAARILREATKD*
Ga0138532_11221111	3300011305	Peatlands Soil	MGMSEKRTKSDKALRQADRVEKRTETRPEQTPKKRKPGEDFSQAAARIVREGTEKP*
Ga0137389_106520672	3300012096	Vadose Zone Soil	MAKKRTKADNAQRQADELEKKADTRPEQTPKKGTPREDVNQATARIVKQTTENL*
Ga0137365_109758301	3300012201	Vadose Zone Soil	WQAVGMAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD*
Ga0137381_110332752	3300012207	Vadose Zone Soil	MAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDLRQASAQIVREATKD*
Ga0137378_109583571	3300012210	Vadose Zone Soil	ADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD*
Ga0137372_100734217	3300012350	Vadose Zone Soil	LWQAVGIAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD*
Ga0153915_101499035	3300012931	Freshwater Wetlands	MAKKRTKFDKSQRQADQLEKMANSRPEQTPKKRTREDLNQAAVRTGREVTEQK*
Ga0153915_119359262	3300012931	Freshwater Wetlands	MAKKRTKADKALRQANQLEKKTDARPEQTPKERTSEDSGQAAARIVREATEKP*
Ga0181532_100051889	3300014164	Bog	MARKRTKADKAQRQASQLETRADTRPEQTAKKRKPSEDFSQAAARIVREATKN*
Ga0182010_100009779	3300014490	Fen	MAKKRTKADKAQRQANQLEKRTDTRPEQTPKKPQASEDFSQVAARIVTRKS*
Ga0181511_14361681	3300016702	Peatland	MARKRTKADKAQRQASQLETRADTRPEQTAKKRKPSEDFSQAAARIVREATKN
Ga0181505_109399511	3300016750	Peatland	KADKAQRQASQLETRADTRPEQTAKKRKPSEDFSQAAARIVREATKN
Ga0187802_100220163	3300017822	Freshwater Sediment	MSEKRTKSDRALRQADQVEKRTEARPEQNPKKRKPREDFSQGAARIVREATGKP
Ga0187802_101673402	3300017822	Freshwater Sediment	KGQRQANQLEKRAAIRPEQTAKKPKPGENFSDAAARIVREATKNH
Ga0187818_100157614	3300017823	Freshwater Sediment	MAMKRTKFDKSQRQANQLEKRADTRPEQTPKKRTPSEDVNQAAARIVRQATE
Ga0187818_100321572	3300017823	Freshwater Sediment	MAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD
Ga0187818_101525522	3300017823	Freshwater Sediment	MAKKRTKADKALRQADQVEKRTEARPEQTPKKGRPREDFSQAAARIVREATENR
Ga0187818_105544672	3300017823	Freshwater Sediment	MAKKRTKLDKSQRQANQLEKRADTRPEQTPKKRTPSEDVNQAAARI
Ga0187856_10108702	3300017925	Peatland	MARKRTKADKEQRQANQLEKRADTRPEQTPKKPQAGEDFSQVAARIVTRKS
Ga0187824_103562511	3300017927	Freshwater Sediment	MGMSEKRTKSDKALRQADQVEKRTEARPEQTPKKPKPGEDFSQAAVGIATDETKKP
Ga0187825_103186202	3300017930	Freshwater Sediment	MSEKRTKSDKALRQADQVEKRTEARPEQTPKKPKSGEDFSQAAVGIATDETKKP
Ga0187801_101285971	3300017933	Freshwater Sediment	VLARKPGLWQAVDMPKKRTKADKGQRQANQLEKRAAIRPEQTAKKPKPGENFSDAAARIVREATKNH
Ga0187803_100142291	3300017934	Freshwater Sediment	MAKKRTKLDKSQRQANQLEKRADTRPEQTPKKRAPREDFSQAAVPETRE
Ga0187803_100982051	3300017934	Freshwater Sediment	MAKKRTKFDKSQRQANQLEKRAETRPEQTPKKAPREDFSQAAVRIVREATKE
Ga0187848_100112612	3300017935	Peatland	MAKKRTKADKAERQSNQLEKRADTRPEQTPKKPQAREDFSQVAARIVTRKS
Ga0187819_100053442	3300017943	Freshwater Sediment	MAKKRTKADKAQRQANQLEKRAAIRPEQTAKKPKPGENFSDAAARIVREATKNH
Ga0187819_106758112	3300017943	Freshwater Sediment	MAKKRTKADKEQRQANQLEKRADTRPEQTPKKPQASEDFSQVAARIATRKS
Ga0187817_100968332	3300017955	Freshwater Sediment	MPKKRTKADKGQRQANQLEKRAAIRPEQTAKKPKPRENFSDAAARIVREATKNH
Ga0187817_103346412	3300017955	Freshwater Sediment	MAKKRTKLDKSQRQANQLEKRADTRPEQTPKKRAPREDFSQAAVPEARE
Ga0187891_13195852	3300017996	Peatland	QADELEQKLDRRPEQVQKKRTGREDFSQAAVRIVREATKD
Ga0187870_10284724	3300017998	Peatland	MAKKRTKLDKSQRQANQLETKTERRPEPTPKKGQSREDFSEAAVRIVKEATENN
Ga0187865_100065325	3300018004	Peatland	MANKRTKADKAQRQANQLEKRADTHPEQTPKKPKAREDFSQAAARIVREATEQK
Ga0187804_100796311	3300018006	Freshwater Sediment	NSMAKKRTKLDKSQRQANQLEKRADTRPEQTPKKRAPREDFSQAAVPETRE
Ga0187804_104294031	3300018006	Freshwater Sediment	MAMKRTKFDKSQRQANQLEKRADTRPEQTPKKRTPSEDVNQAAARIVRQATQ
Ga0187810_102785731	3300018012	Freshwater Sediment	FDKSQRQANQLEKRADTRPEQTPKKRTPSEDVNQAAARIVRQATE
Ga0187810_103786321	3300018012	Freshwater Sediment	FGPLWQAVGMAKKRTKADKAQRQANQLETRADTRPEQTPKKRKPSEDFSQAAARIVREATKD
Ga0187872_103691191	3300018017	Peatland	ALRQADQVEKRTEARPEQNPKKRKPREDFSQGAARIVREATGKP
Ga0187881_104443962	3300018024	Peatland	ALAGFARLWQAVGMAKKRTKADRAERQSNQLEKRADTRPEQTPKKPQAREDFSQVAARIVTRKS
Ga0187858_100185645	3300018057	Peatland	FARLWQAVGMAKKRTKADKAERQSNQLEKRADTRPEQTPKKPQAREDFSQVAARIVTRKS
Ga0187858_102298454	3300018057	Peatland	MGSYGYVREANKSDKALRQADRVEKRTEARPEQTPKKRKPGEDFSQAAARIVREATERP
Ga0208077_10381601	3300025427	Arctic Peat Soil	MSEKRTKSDKALRQADQVEKRTEARPEQNPNKRKPREDFSQGAVRIGREVTEKP
Ga0208688_10278812	3300025480	Peatland	MAKKRTKADRAERQSNQLEKRADTRPEQTPKKPQAREDFSQVAARIVTRKS
Ga0257168_11427171	3300026514	Soil	KVDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQGAARILREATKD
Ga0208042_11505221	3300027568	Peatlands Soil	MAKKRTKSDKSQRQANQLEKRVDTRPEQTPKKRAPQGDFSQVGVRLVKEAAENR
Ga0208827_10016245	3300027641	Peatlands Soil	MATKRTKADRGQRQANHLEEKSDIRPEQTPKKPKPSEDFNQAAVRIIREATENK
Ga0209655_100594752	3300027767	Bog Forest Soil	MARKRTKADKAQRQASQLETRADTRPEQTAKKRKPSADFSQAAARIVREATKN
Ga0209180_101560492	3300027846	Vadose Zone Soil	MAKKRTKVDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQGAARIVREATKD
Ga0209517_101199132	3300027854	Peatlands Soil	MAKKRTKADKEQRQANQLEKRVDTHPEQTTKKPQASEDFSQVAARIVTRKS
Ga0209517_103080472	3300027854	Peatlands Soil	MAKKRTKTDNAQRQANQLEKRADTRPEQTPKKPQASEDFSQVAARIVTRKS
Ga0209517_106766071	3300027854	Peatlands Soil	MAKKRTKVDKAQRQANQLEKRVDTRPEQTPKKPQASEDFSQVTARIVTRKS
Ga0209701_101167891	3300027862	Vadose Zone Soil	MAKKRTKVDKAQRQANQLETRADTRPEQTPKKRKPSEDFSQGAARILREATKD
Ga0209701_102559322	3300027862	Vadose Zone Soil	MAKKRTKADNAQRQADELEKKADTRPEQTPKKGTPREDVSQATARIVKQTTENL
Ga0209067_100534402	3300027898	Watersheds	MSEKRTRSDQALRQADQAEKRTEARPEQDSKKRKPGEDFSQAAARIVREATEKL
Ga0209415_1002309610	3300027905	Peatlands Soil	MSEKRTKSDKALRQADQVEKRTEARPEQTPKKRKPGEDFSQAAPQIVREATEKP
Ga0209415_104457852	3300027905	Peatlands Soil	MAKKRTKFDKSQRQANQLEKRVDTRPEQTPKKRAPQGDFSQVGVRLVKEAAENR
Ga0209698_101336011	3300027911	Watersheds	MAKKRTKAHKALRQADHAEKRTEARPEQTPKKGKPDEDFSQAAARFIREATEGTK
Ga0265338_108213301	3300028800	Rhizosphere	MSEKRTKSDKALRQADQVEKRTEARPEQDPIKRKPRQDLSQGAVRIVIDA
Ga0310038_104045011	3300030707	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEARPEQTPKKRKPGEDFSQAAPQIVREATEKP
Ga0265330_105267302	3300031235	Rhizosphere	MSEKRTKSDKALRQADQVEKRTEARPEQSPSKRKPRENFSQGAVRIVREATEKL
Ga0265339_101454633	3300031249	Rhizosphere	MSEKRTKSDKALRQADQVEKRTEARPEQDPIKRQPRQDFTQGAVRIVREATEKP
Ga0311301_106173451	3300032160	Peatlands Soil	KAQRQAKQLETRADTRPEQTPKKRKPSEDFRQAAARIVREATKD
Ga0311301_121032372	3300032160	Peatlands Soil	MGMSEKRTKSDKALRQADQVEKRTEERPEQTPKKPNPGEDFSQAAARIVREATEKL
Ga0335069_100645966	3300032893	Soil	MAKKRTKLDKSQRRANQLEKRADTRPEQTPRKRAPREDFSQAAVPEAREVIKKQELGQSRFV
Ga0326726_115809252	3300033433	Peat Soil	KLDKSQRQANQLEKKTERRPEQTPKKGQSREDFGEAAVRVVKEATENN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072621

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences