Metagenome Family F072600

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072600
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	109 residues
Representative Sequence	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR
Number of Associated Samples	91
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.47 %
% of genes near scaffold ends (potentially truncated)	28.93 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (82.645 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.050 % of family members)
Environment Ontology (ENVO)	Unclassified (23.140 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.975 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.43% β-sheet: 0.00% Coil/Unstructured: 33.57%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00856	SET	6.61
PF13414	TPR_11	4.96
PF03703	bPH_2	4.96
PF02353	CMAS	1.65
PF13567	DUF4131	0.83
PF00515	TPR_1	0.83
PF12762	DDE_Tnp_IS1595	0.83
PF00571	CBS	0.83
PF01694	Rhomboid	0.83
PF01370	Epimerase	0.83
PF13181	TPR_8	0.83
PF02586	SRAP	0.83
PF07690	MFS_1	0.83
PF00291	PALP	0.83
PF12700	HlyD_2	0.83
PF00294	PfkB	0.83
PF09939	DUF2171	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	4.96
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	4.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.65
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.65
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.65
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.64 %
Unclassified	root	N/A	17.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.64 %
Unclassified	root	N/A	17.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.64 %
Unclassified	root	N/A	17.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.51 %
Unclassified	root	N/A	17.36 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	71.07 %
Unclassified	root	N/A	17.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.66 %
Unclassified	root	N/A	17.36 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.36 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	10.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.65 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.36 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.31 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Luteibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter	1.65 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1.65 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.83 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.36 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3.31 %
unclassified Luteibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter → unclassified Luteibacter	1.65 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1.65 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	0.83 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.36 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3.31 %
Luteibacter sp. UNCMF366Tsu5.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter → unclassified Luteibacter → Luteibacter sp. UNCMF366Tsu5.1	1.65 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1.65 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	0.83 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100489283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300000956\|JGI10216J12902_101788061	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300000956\|JGI10216J12902_106212351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1034	Open in IMG/M
3300001431\|F14TB_101922884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1127	Open in IMG/M
3300003659\|JGI25404J52841_10023954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1316	Open in IMG/M
3300003911\|JGI25405J52794_10038928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300004156\|Ga0062589_102662575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter → unclassified Luteibacter → Luteibacter sp. UNCMF366Tsu5.1	520	Open in IMG/M
3300004479\|Ga0062595_102694497	Not Available	501	Open in IMG/M
3300005330\|Ga0070690_101539706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Luteibacter → unclassified Luteibacter → Luteibacter sp. UNCMF366Tsu5.1	538	Open in IMG/M
3300005332\|Ga0066388_100001111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14588	Open in IMG/M
3300005332\|Ga0066388_100250642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2409	Open in IMG/M
3300005332\|Ga0066388_100549384	Not Available	1785	Open in IMG/M
3300005332\|Ga0066388_100689222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300005332\|Ga0066388_100855393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1494	Open in IMG/M
3300005338\|Ga0068868_100988700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300005338\|Ga0068868_101962298	Not Available	555	Open in IMG/M
3300005353\|Ga0070669_100214669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1519	Open in IMG/M
3300005353\|Ga0070669_100969770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	728	Open in IMG/M
3300005438\|Ga0070701_10170690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
3300005441\|Ga0070700_100033861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3081	Open in IMG/M
3300005455\|Ga0070663_101201067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300005713\|Ga0066905_100013840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4001	Open in IMG/M
3300005713\|Ga0066905_100309252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1245	Open in IMG/M
3300005713\|Ga0066905_100975274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300005713\|Ga0066905_101505228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300005713\|Ga0066905_102030811	Not Available	534	Open in IMG/M
3300005843\|Ga0068860_101830836	Not Available	629	Open in IMG/M
3300005843\|Ga0068860_102252992	Not Available	565	Open in IMG/M
3300005844\|Ga0068862_101936041	Not Available	600	Open in IMG/M
3300005983\|Ga0081540_1000434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41225	Open in IMG/M
3300005985\|Ga0081539_10281607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300006058\|Ga0075432_10258276	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300006175\|Ga0070712_100658471	Not Available	890	Open in IMG/M
3300006196\|Ga0075422_10303228	Not Available	685	Open in IMG/M
3300006755\|Ga0079222_11396995	Not Available	647	Open in IMG/M
3300006844\|Ga0075428_100014774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8674	Open in IMG/M
3300006844\|Ga0075428_100067761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3906	Open in IMG/M
3300006844\|Ga0075428_100331011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1636	Open in IMG/M
3300006844\|Ga0075428_102731908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300006852\|Ga0075433_10248883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1577	Open in IMG/M
3300006853\|Ga0075420_100683601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	885	Open in IMG/M
3300006954\|Ga0079219_10575576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300006954\|Ga0079219_12052402	Not Available	546	Open in IMG/M
3300007004\|Ga0079218_11354637	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300009094\|Ga0111539_10715705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1165	Open in IMG/M
3300009100\|Ga0075418_10083968	All Organisms → cellular organisms → Bacteria → Proteobacteria	3387	Open in IMG/M
3300009100\|Ga0075418_10320459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1654	Open in IMG/M
3300009100\|Ga0075418_11392401	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300009146\|Ga0105091_10436664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300009147\|Ga0114129_10904006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300009148\|Ga0105243_12324000	Not Available	574	Open in IMG/M
3300009157\|Ga0105092_10300195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	906	Open in IMG/M
3300009162\|Ga0075423_10849900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300009174\|Ga0105241_11413706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300009553\|Ga0105249_10550707	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300009814\|Ga0105082_1024160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
3300009836\|Ga0105068_1035183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	883	Open in IMG/M
3300010043\|Ga0126380_10053901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2190	Open in IMG/M
3300010043\|Ga0126380_10333946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1095	Open in IMG/M
3300010046\|Ga0126384_10358809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300010046\|Ga0126384_10432351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1119	Open in IMG/M
3300010047\|Ga0126382_10049391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2454	Open in IMG/M
3300010047\|Ga0126382_10776256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	814	Open in IMG/M
3300010047\|Ga0126382_11922053	Not Available	560	Open in IMG/M
3300010358\|Ga0126370_11446049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300010359\|Ga0126376_12643735	Not Available	551	Open in IMG/M
3300010360\|Ga0126372_10069581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2496	Open in IMG/M
3300010362\|Ga0126377_10010780	All Organisms → cellular organisms → Bacteria → Proteobacteria	7130	Open in IMG/M
3300010375\|Ga0105239_13617020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300010397\|Ga0134124_11515169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300010400\|Ga0134122_11018003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300011119\|Ga0105246_10228527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1463	Open in IMG/M
3300012899\|Ga0157299_10225618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300012948\|Ga0126375_10042939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2350	Open in IMG/M
3300012948\|Ga0126375_10600633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300012957\|Ga0164303_10513255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300012957\|Ga0164303_10912606	Not Available	616	Open in IMG/M
3300012960\|Ga0164301_10623148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300012961\|Ga0164302_11947353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300012986\|Ga0164304_10558928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300012988\|Ga0164306_11484335	Not Available	580	Open in IMG/M
3300013297\|Ga0157378_11134900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	819	Open in IMG/M
3300014326\|Ga0157380_11866560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300015371\|Ga0132258_10103402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6719	Open in IMG/M
3300015371\|Ga0132258_12572558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1272	Open in IMG/M
3300015372\|Ga0132256_100444500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1403	Open in IMG/M
3300015372\|Ga0132256_101487536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300017792\|Ga0163161_10727352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300017993\|Ga0187823_10309679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300018028\|Ga0184608_10187433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300018056\|Ga0184623_10143025	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300018071\|Ga0184618_10045748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1572	Open in IMG/M
3300018072\|Ga0184635_10338206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300018078\|Ga0184612_10016973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3715	Open in IMG/M
3300018081\|Ga0184625_10235561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300018081\|Ga0184625_10282711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300019487\|Ga0187893_10931765	Not Available	516	Open in IMG/M
3300022756\|Ga0222622_11410520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300025905\|Ga0207685_10007058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3105	Open in IMG/M
3300025911\|Ga0207654_10889792	Not Available	645	Open in IMG/M
3300025935\|Ga0207709_10937070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300025960\|Ga0207651_11066041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300025961\|Ga0207712_10380762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1181	Open in IMG/M
3300026075\|Ga0207708_10878871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300026118\|Ga0207675_101721859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300027324\|Ga0209845_1040002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300027886\|Ga0209486_10873101	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300027907\|Ga0207428_10169879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1652	Open in IMG/M
3300027907\|Ga0207428_10261902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300027907\|Ga0207428_10516841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	866	Open in IMG/M
3300028587\|Ga0247828_10368646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300028592\|Ga0247822_10274488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1281	Open in IMG/M
3300031184\|Ga0307499_10007561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300031455\|Ga0307505_10237582	Not Available	846	Open in IMG/M
3300031740\|Ga0307468_100472208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	985	Open in IMG/M
3300032174\|Ga0307470_10277865	All Organisms → cellular organisms → Bacteria → Proteobacteria	1123	Open in IMG/M
3300032174\|Ga0307470_10890357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300033004\|Ga0335084_11760455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300033550\|Ga0247829_10167498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1724	Open in IMG/M
3300033551\|Ga0247830_10753073	Not Available	774	Open in IMG/M
3300034147\|Ga0364925_0104300	Not Available	1008	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.98%
Host-Associated	Host-Associated	38.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.89%
Plants	Host-Associated → Plants	38.02%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.74%
Sediment	Environmental → Aquatic → Sediment	6.61%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Cave	Environmental → Terrestrial → Cave	0.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.31%
Loam	Environmental → Terrestrial → Soil → Loam	14.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.96%
Sand	Environmental → Terrestrial → Soil → Sand	2.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.48%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.31%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1004892831	3300000559	Soil	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIADVILKPLHPLAVWLVGVIMPPLRTLVGNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVTGRG*
JGI10216J12902_1017880613	3300000956	Soil	MLSWLKWAGLRAPMLPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVASIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGAARLLHWAVTRR*
JGI10216J12902_1062123513	3300000956	Soil	MFGWLKWTLVRAPVLPVAWVLAHATVLLWKALDPRYIDQAQWIVDVILKPLHPLGVWLVGLVMPPLRTLIGNMPPTHLDADKVLYGFLVPIYMALILGVLRLVRWAVTGRS*
F14TB_1019228843	3300001431	Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLAPIYMGIIIGFFR
JGI25404J52841_100239541	3300003659	Tabebuia Heterophylla Rhizosphere	MMSWLKWSAARAPALPVAWVLAHATVXLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
JGI25405J52794_100389281	3300003911	Tabebuia Heterophylla Rhizosphere	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDGASWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVSPTARY*
Ga0062589_1026625751	3300004156	Soil	MGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRFLRWAVRSS*
Ga0062595_1026944971	3300004479	Soil	MISWLKWSAARAPILPVAWVLAHATVLLWKALDPRYIDEADWIVDTILKPLHPLGVSLVSFVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAPRF*
Ga0070690_1015397061	3300005330	Switchgrass Rhizosphere	SRGMMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRFLRWAVRSS*
Ga0066388_10000111112	3300005332	Tropical Forest Soil	MMSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDETGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGFFRMLRRLVAPAMH*
Ga0066388_1002506422	3300005332	Tropical Forest Soil	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAEWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYLGIILGTGRFIGWLVRGSR*
Ga0066388_1005493844	3300005332	Tropical Forest Soil	MMSWVRWSAARAPILPLAWVLAHATVLLWKALDPRYIDSTEWILDHILRPLHPLAVWLVATVAPALRTLVSNMPPTHLDVDKVLYGFLVPIFMWLILGQLRFMRWLLLSAVGRT*
Ga0066388_1006892221	3300005332	Tropical Forest Soil	MMAWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAARL*
Ga0066388_1008553932	3300005332	Tropical Forest Soil	MMSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEASWIVDSILKPLHPIGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRTLRRVVGG*
Ga0068868_1009887002	3300005338	Miscanthus Rhizosphere	VSAWLKWVSVRAPVLPVAWVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPVGVWLISLIMPPLRILVSNMPPTHLDADTVLYGFLVPIYMGLI
Ga0068868_1019622981	3300005338	Miscanthus Rhizosphere	IGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0070669_1002146693	3300005353	Switchgrass Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0070669_1009697702	3300005353	Switchgrass Rhizosphere	WVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVAAIMPALRTLVGNMPPTHLDADKVIYGFLVPIYMALILGLLRLLRWAVAGRD*
Ga0070701_101706902	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRFLRWAVRSS*
Ga0070700_1000338613	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0070663_1012010671	3300005455	Corn Rhizosphere	MISWLKWSAARAPALPIAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGVIIGFFRMLRWLVAPAAR*
Ga0066905_1000138406	3300005713	Tropical Forest Soil	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAARL*
Ga0066905_1003092521	3300005713	Tropical Forest Soil	AARAPALPVAWVLAHATVLLWKALDPRYIDEAEWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0066905_1009752742	3300005713	Tropical Forest Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGVIIGFFRMLRWLVAPVVR*
Ga0066905_1015052281	3300005713	Tropical Forest Soil	MLGWLQWTLVRAPILPVAWVLAHATVLLWKALDPRYIDGAQWTVDVILKPLHPLGVWLVAAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMAVILGVLRLGRWAVTGRS*
Ga0066905_1020308111	3300005713	Tropical Forest Soil	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPTARS*
Ga0068860_1018308361	3300005843	Switchgrass Rhizosphere	AWLKWVGVRAPVLPVAWVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPFGVWLVSSIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWVLVGRN*
Ga0068860_1022529921	3300005843	Switchgrass Rhizosphere	GTMISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0068862_1019360411	3300005844	Switchgrass Rhizosphere	SRGMMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0081540_100043427	3300005983	Tabebuia Heterophylla Rhizosphere	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0081539_102816071	3300005985	Tabebuia Heterophylla Rhizosphere	MMGWLKWTGVRAPILPVAWVLAHATVLLWKALDSRYIDEAQWIVDVILKPLHPLGVWLVGAIMPALRTLVSNMPPTHLDADKVIYGFLVPIYMVLILGFLRLLRWAVTGRD*
Ga0075432_102582762	3300006058	Populus Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0070712_1006584712	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MISWVKWSATRAPALPVVWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGLFRMLRWLVAPGAR*
Ga0075422_103032282	3300006196	Populus Rhizosphere	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDTILKPLHPLGVWLVGVVMPPLRTLVGNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVTTKD*
Ga0079222_113969951	3300006755	Agricultural Soil	PALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPTAR*
Ga0075428_10001477410	3300006844	Populus Rhizosphere	MMGWLKWIGLRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0075428_1000677614	3300006844	Populus Rhizosphere	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0075428_1003310112	3300006844	Populus Rhizosphere	MLGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDGAQWTVDVVLKPLHPLGVWLVAAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMAVILGLLRLGRWAVTGRS*
Ga0075428_1027319082	3300006844	Populus Rhizosphere	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWL
Ga0075433_102488833	3300006852	Populus Rhizosphere	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPLYIDEAQWIADTILKPLHPLAVWLVGMIMPPLRTLIGNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVTTKD*
Ga0075420_1006836012	3300006853	Populus Rhizosphere	MLGWLQWTLVRAPILPVAWVLAHATVLLWKALDPRYIDGAQWTVDVILKPLHPLGVWLVAAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMAVILGLLRLGRWAVTGRS*
Ga0079219_105755763	3300006954	Agricultural Soil	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIY
Ga0079219_120524021	3300006954	Agricultural Soil	MIAWVKWSAARAPLLPVAWVLAHATVLLWKALDPRYIDEAQWIVDTILKPLHPLGVWLVSAILPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRRLFAPAAH*
Ga0079218_113546372	3300007004	Agricultural Soil	MLAWLRWSVVRAPILPVAWVLAHATVLLWKALDPGYIYGAQWIVDNILRPLHGLGVWLVAAVAPPLRTLVGNMPPTHLDVDKVLYGFLVPVFMGLILGQLRLLRWLVLGAGESVDPIGAAYPSPHAGEERKR*
Ga0111539_107157052	3300009094	Populus Rhizosphere	LPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPTAR*
Ga0075418_100839683	3300009100	Populus Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVLVG*
Ga0075418_103204593	3300009100	Populus Rhizosphere	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDTILKPLHPLGVWLVGVVMPPLRTLVGNMPPTHLDADKVLYGFLVPIYMALIL
Ga0075418_113924011	3300009100	Populus Rhizosphere	PILPVAWVLAHATVLLWKALDPRYIDGAQWTVDVILKPLHPLGVWLVAAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMAVILGLLRLGRWAVTGRS*
Ga0105091_104366641	3300009146	Freshwater Sediment	MFGWLKWTLVRAPILPVAWVLAHATVLLWKALDPRYIDQAQWIVDVILKPLHPLGVWLVGLVMPPLRTLISNMPPTHLDADKVLYGFLVPIYMALILGVLRLVRWAVTGRS*
Ga0114129_109040063	3300009147	Populus Rhizosphere	MMAWLKWTGVRAPILPVAWVMAHASVLLWKALDPRYIDGAQWIVDVILKPLHPLGVWLVAAIMPALRTLVSNMPPTHLDADKVLYGFLVPIYMAVILGLLRLLRWAVAGRD*
Ga0105243_123240002	3300009148	Miscanthus Rhizosphere	GMMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0105092_103001952	3300009157	Freshwater Sediment	MIPWLQWTFHRAPALPVAWVLAHATVLLWKALDPRYVDEAQWIVDVILKPLHPLGVWLVATVMPPLRTLVSNMPPTHLDADKVLYGFLVPVYLGLIVGFFRFVRWTMWRR*
Ga0075423_108499002	3300009162	Populus Rhizosphere	MMAWLKWTGVRAPILPVAWVMAHASVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0105241_114137061	3300009174	Corn Rhizosphere	MSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPTAR*
Ga0105249_105507072	3300009553	Switchgrass Rhizosphere	MMGWLKWTGVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVAAIMPALRTLVSNMPPTHLDADKVIYGFLVPIYMALILGLLRLLRWAVAGRD*
Ga0105082_10241603	3300009814	Groundwater Sand	MLGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDGAQWIVDVILKPLHPLGVWLVASIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLGRWAVTGRS*
Ga0105068_10351832	3300009836	Groundwater Sand	MMAWLRWSAVRAPVLPVAWVLAHATVLLWKALDPRYIDGAQWMVDYILRPLHPVGVWLVAAIAPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGLLIGLLRLSRSIVLGRASEDGGRPAEAKQ*
Ga0126380_100539014	3300010043	Tropical Forest Soil	MSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDETGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGFFRMLRRLVTPATH*
Ga0126380_103339462	3300010043	Tropical Forest Soil	MSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEASWIVDSILKPLHPIGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRTLRRVVGG*
Ga0126384_103588093	3300010046	Tropical Forest Soil	MSWVRWSAARAPILPLAWVLAHATVLLWKALDPRYIDSTEWILDHILRPLHPLAVWLVATVAPALRTLVSNMPPTHLDVDKVLYGFLVPIFMWLILGQLRFMRWLLLSAVGRT*
Ga0126384_104323512	3300010046	Tropical Forest Soil	MSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDETGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGFFRMLRRLVTPATH*
Ga0126382_100493914	3300010047	Tropical Forest Soil	MSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAARL*
Ga0126382_107762562	3300010047	Tropical Forest Soil	MSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAEWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0126382_119220532	3300010047	Tropical Forest Soil	MVGWLKWSALRAPILPVAWVLAHATVLLWKALDPRYIDGAQWIVDMVLKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGLILGLLRFLRWVVRGGGEPAYVPPAR
Ga0126370_114460492	3300010358	Tropical Forest Soil	MSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDETGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGFFRMLRRLVAPATH*
Ga0126376_126437352	3300010359	Tropical Forest Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAEWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0126372_100695814	3300010360	Tropical Forest Soil	MSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDSILKPLHPIGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRTLRRVVGG*
Ga0126377_100107806	3300010362	Tropical Forest Soil	KWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAEWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPVVR*
Ga0105239_136170202	3300010375	Corn Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGMVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG*
Ga0134124_115151692	3300010397	Terrestrial Soil	VSAWLKWVSVRAPVLPVAWVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPFGVWLVSLIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWAIV
Ga0134122_110180031	3300010400	Terrestrial Soil	MLLLWLKWTATRAPVLPVAWILAHATVLLWKALDPHYIDGAQWIVDHILRPLHPFGVWLVSTIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYLGL
Ga0105246_102285273	3300011119	Miscanthus Rhizosphere	VSAWLKWVSVRAPVLPVAWVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPFGVWLVSSIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWAIVGRS*
Ga0157299_102256181	3300012899	Soil	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLL
Ga0126375_100429392	3300012948	Tropical Forest Soil	MMSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEASWIVDSILKPLHPIGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRTLRLVVGG*
Ga0126375_106006332	3300012948	Tropical Forest Soil	MMSWLKWSATRAPALPVAWVLAHATVLLWKALDPRYIDETGWIVDTILKPLHPLGVWLVSVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGFFRMLRRLVAPAAH*
Ga0164303_105132552	3300012957	Soil	MLGWLKWTVVRAPILPVAWVMAHATVLLWKALDPRYIDEAQWIVDVILRPLHPLGVWLVGLVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLVRLLRWAVTGRG*
Ga0164303_109126061	3300012957	Soil	MISWVKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGLFRMLRWLVAPGAR*
Ga0164301_106231482	3300012960	Soil	MISWVKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIG
Ga0164302_119473532	3300012961	Soil	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPLYIGEAQWIADTILKPLHPLAVWLVGVIMPPLRTLVGNMPPTHLDADKVLYGFLGPMHSGVSLGLLRLLRWALAGQD*
Ga0164304_105589281	3300012986	Soil	MISWVKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGLFRMLRWLVA
Ga0164306_114843351	3300012988	Soil	WVKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGLFRMLRWLVAPGAR*
Ga0157378_111349002	3300013297	Miscanthus Rhizosphere	VSAWLKWVGVRAPVLPVAWVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPFGVWLVSSIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWVLVGRN*
Ga0157380_118665602	3300014326	Switchgrass Rhizosphere	WVLAHASVLLWKALDPRYIDEAQWIVDTILKPLHPVGVWLISLIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWAIVGRS*
Ga0132258_101034026	3300015371	Arabidopsis Rhizosphere	MSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR*
Ga0132258_125725583	3300015371	Arabidopsis Rhizosphere	GSMLAWLKWTGARAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVGVVMPPLCTLVSNMPPTHLDADKVLYGFLVPIYMALILGVLRLLRWAVRGS*
Ga0132256_1004445003	3300015372	Arabidopsis Rhizosphere	MLAWLKWTGARAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGVLRLLRWAVRGS*
Ga0132256_1014875362	3300015372	Arabidopsis Rhizosphere	MLAWLKWAGIRAPVLPVAWILAHATVLLWKALDPRYIDEAQWIVDTILKPLHPFGVWLVSSIMPPLRILVSNMPPTHLDADKVLYGFLVPIYMGLILGFLRLMRWAIVGRS*
Ga0163161_107273522	3300017792	Switchgrass Rhizosphere	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR
Ga0187823_103096791	3300017993	Freshwater Sediment	LDWLKWIGLRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVGVVMPPLRTLVSNMPPTDLDADKVLYGFLVPIYLALILGLL
Ga0184608_101874331	3300018028	Groundwater Sediment	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG
Ga0184623_101430253	3300018056	Groundwater Sediment	MMAWLRWSAVRAPVLPVAWVLAHATVLLWKALDPRYIDGAQWMVDYILRPLHPVGVWLVAAVAPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGLLIGLLRLSRSIVLGRASADGGRPAEAKR
Ga0184618_100457483	3300018071	Groundwater Sediment	VGWLKWIGVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPFGVWLVGVVMPPLRTLVGNMPPTHLDADKVLYGFLVPVYLALILGLLRLLRWVATGGR
Ga0184635_103382062	3300018072	Groundwater Sediment	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVTGRD
Ga0184612_100169732	3300018078	Groundwater Sediment	MMAWLRWSAVRAPVLPVAWVLAHATVLLWKALDPRYIDGAQWMVDYILKPLHPVGVWLVAAIAPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGLLIGLLRLSRSIVLGRASEDGGRPAEAKR
Ga0184625_102355612	3300018081	Groundwater Sediment	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKDLYGFLVPIYMALILGLLRLLRWAVRSG
Ga0184625_102827112	3300018081	Groundwater Sediment	MLGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIADVILKPLHPLAVWLVGVVMPPLRTLISNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVMGRD
Ga0187893_109317652	3300019487	Microbial Mat On Rocks	MMLWLKWMGARASILPVAWILAHATVLLWKAFDPRYNEWAQWIVDHILRPLHPLGVWLVSAIMPPLRTLVSNMPPTHVDADKVLYGFLVPIYLGAILGLFRMLRRLFTGDAA
Ga0222622_114105202	3300022756	Groundwater Sediment	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVP
Ga0207685_100070582	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MISWVKWSATRAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSVIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALIIGLFRMLRWLVAPGAR
Ga0207654_108897921	3300025911	Corn Rhizosphere	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR
Ga0207709_109370702	3300025935	Miscanthus Rhizosphere	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLISAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRML
Ga0207651_110660411	3300025960	Switchgrass Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGMVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG
Ga0207712_103807622	3300025961	Switchgrass Rhizosphere	MMGWLKWTGVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVAAIMPALRTLVSNMPPTHLDADKVIYGFLVPIYMALILGLLRLLRWAVAGRD
Ga0207708_108788713	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MMGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGMVMPPLRTLVSNMPPTHLDADKVLYGFLV
Ga0207675_1017218591	3300026118	Switchgrass Rhizosphere	MGWLKWIGLRAPMLPLAWVLAHATVLLWKALDPRYIDEAQWIVDVVLKPLHPVGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVRGG
Ga0209845_10400022	3300027324	Groundwater Sand	MLGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDGAQWIVDVILKPLHPLGVWLVASIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMALILGLLRLGRWAVTGRS
Ga0209486_108731011	3300027886	Agricultural Soil	AWVLAHATVLLWKALDPGYIYGAQWIVDNILRPLHGLGVWLVAAVAPPLRTLVGNMPPTHLDVDKVLYGFLVPVFMGLILGQLRLLRWLVLGAGESVDPIGAAYPSPHAGEERKR
Ga0207428_101698794	3300027907	Populus Rhizosphere	MISWLKWSAARAPILPVAWVLAHATVLLWKALDPRYIDEADWIVDTILKPLHPLGVSLVSFVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAPRF
Ga0207428_102619023	3300027907	Populus Rhizosphere	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPLYIDEAQWIADTILKPLHPLAVWLVGMIMPPLRTLIGNMPPTHLDADKVLYGFLVPIYMALILGLLRLLRWAVTTKD
Ga0207428_105168411	3300027907	Populus Rhizosphere	MMSWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPTAR
Ga0247828_103686461	3300028587	Soil	MMTWLLWSATRAPLLPVAWVLAHATVLLWKALDPGYINEAQWIVDYILKPLHPMAVWLVSAVMPPLRTLVANMPPTHLDADKVLYGFLVPVYMGIILGIIRMIRWTVSGRG
Ga0247822_102744882	3300028592	Soil	MFGWLKWTLVRAPILPVAWVLAHATVLLWKALDPRYIDQAQWIVDVILKPLHPLGVWLVGLVMPPLRTLISNMPPTHLDADKVLYGFLVPIYMALILGVLRLVRWAVTGRS
Ga0307499_100075613	3300031184	Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPFGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGLFRMLRWLVVPAAR
Ga0307505_102375822	3300031455	Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAIMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR
Ga0307468_1004722083	3300031740	Hardwood Forest Soil	MFGWLKWTFVRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVAAIMPALRTLVSNMPPTHLDADKVIYGYLVPIYMVLI
Ga0307470_102778651	3300032174	Hardwood Forest Soil	MLSWLQWSAIRAPILPIAWVLAHATVLLWKALDPGYIDSAQWLVDHILKPLHPLGVWLVATIAPALRTLVSNMPPTHLDADKILYGFLVPIYMGLILGQLRLLRWMFVGRRAHQPANIG
Ga0307470_108903572	3300032174	Hardwood Forest Soil	MISWLKWSAARAPALPVAWVLAHATVLLWKALDPRYIDEAGWIVDTILKPLHPLGVWLVSAVMPPLRTLVSNMPPTHLDADKVLYGFLVPIYMGIIIGFFRMLRWLVAPAAR
Ga0335084_117604552	3300033004	Soil	MLDWLKWIGLRAPILPVAWVLAHATVLLWKALDPRYIDEAQWIVDVILKPLHPLGVWLVGVVMPPLRTLVSNMPPTHLDADKVLYGFLVP
Ga0247829_101674982	3300033550	Soil	MTWLLWSATRAPLLPVAWVLAHATVLLWKALDPGYINEAQWIVDYILKPLHPMAVWLVSAVMPPLRTLVANMPPTHLDADKVLYGFLVPVYMGIILGIIRMIRWTVSGRG
Ga0247830_107530732	3300033551	Soil	MIPWLKWTFARAPALPVAWVLAHATVLLWKALDPRYVDEAQWIVDVILKPLHPLGVWLVATVMPPLRTLVSNMPPTHLDADKVLYGFLVPVYLGLIVGFFRFVRWTMWRR
Ga0364925_0104300_181_516	3300034147	Sediment	MTAWLIWSATRAPMLPVAWVLAHATVLLWKALDPGYIHEAQWIVDFILKPLHPLAVWLVSAVMPPLRTLVANMPPTHLDADKVLYGFLVPIYMGVILGIIRMIRWLLSGDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072600

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences