Metagenome / Metatranscriptome Family F072593

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072593
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	45 residues
Representative Sequence	TATLRRICIYIPAMGAEERKRLADSLRAAGGAINAAIADLEKAEK
Number of Associated Samples	112
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.31 %
% of genes near scaffold ends (potentially truncated)	94.21 %
% of genes from short scaffolds (< 2000 bps)	92.56 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.603 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (9.917 % of family members)
Environment Ontology (ENVO)	Unclassified (24.793 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.198 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.73% β-sheet: 0.00% Coil/Unstructured: 60.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02737	3HCDH_N	91.74
PF12704	MacB_PCD	2.48
PF02636	Methyltransf_28	1.65
PF00135	COesterase	0.83
PF02446	Glyco_hydro_77	0.83
PF14559	TPR_19	0.83
PF00909	Ammonium_transp	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	91.74
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	91.74
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	91.74
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	91.74
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	91.74
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	91.74
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	91.74
COG1565	SAM-dependent methyltransferase, MidA family	General function prediction only [R]	1.65
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.83
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.83
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.60 %
Unclassified	root	N/A	12.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.60 %
Unclassified	root	N/A	12.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.60 %
Unclassified	root	N/A	12.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	76.86 %
Unclassified	root	N/A	12.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	58.68 %
Unclassified	root	N/A	12.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.09 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.31 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.31 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.31 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.40 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.31 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10007391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7581	Open in IMG/M
3300001175\|JGI12649J13570_1022188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	682	Open in IMG/M
3300001593\|JGI12635J15846_10263118	Not Available	1099	Open in IMG/M
3300002245\|JGIcombinedJ26739_101495165	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	570	Open in IMG/M
3300002907\|JGI25613J43889_10189152	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300004082\|Ga0062384_101460512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	505	Open in IMG/M
3300004091\|Ga0062387_100030111	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300004091\|Ga0062387_101741440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	507	Open in IMG/M
3300004134\|Ga0058906_1174078	Not Available	519	Open in IMG/M
3300004477\|Ga0068971_1538380	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	592	Open in IMG/M
3300005167\|Ga0066672_10665264	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	671	Open in IMG/M
3300005526\|Ga0073909_10205464	All Organisms → cellular organisms → Bacteria → Acidobacteria	854	Open in IMG/M
3300005535\|Ga0070684_102002448	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	547	Open in IMG/M
3300005542\|Ga0070732_10952881	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	524	Open in IMG/M
3300005602\|Ga0070762_10553714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	759	Open in IMG/M
3300005610\|Ga0070763_10197290	Not Available	1072	Open in IMG/M
3300005712\|Ga0070764_10612526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	665	Open in IMG/M
3300005921\|Ga0070766_10244414	Not Available	1136	Open in IMG/M
3300006028\|Ga0070717_10987603	All Organisms → cellular organisms → Bacteria → Acidobacteria	767	Open in IMG/M
3300006028\|Ga0070717_11593341	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300006162\|Ga0075030_100897727	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300006175\|Ga0070712_100967607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	736	Open in IMG/M
3300006806\|Ga0079220_12032753	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009520\|Ga0116214_1366849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	559	Open in IMG/M
3300009545\|Ga0105237_10870412	Not Available	908	Open in IMG/M
3300009552\|Ga0116138_1124813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	712	Open in IMG/M
3300009623\|Ga0116133_1090207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	774	Open in IMG/M
3300009672\|Ga0116215_1498577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	526	Open in IMG/M
3300009700\|Ga0116217_10651402	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	654	Open in IMG/M
3300009839\|Ga0116223_10805200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	537	Open in IMG/M
3300010048\|Ga0126373_12907109	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	534	Open in IMG/M
3300010366\|Ga0126379_10722837	Not Available	1091	Open in IMG/M
3300010379\|Ga0136449_103444720	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300010859\|Ga0126352_1014272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	730	Open in IMG/M
3300010877\|Ga0126356_10971233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	566	Open in IMG/M
3300010937\|Ga0137776_1704900	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	700	Open in IMG/M
3300011120\|Ga0150983_12915393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	531	Open in IMG/M
3300012189\|Ga0137388_10358812	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300012205\|Ga0137362_10565938	Not Available	981	Open in IMG/M
3300012351\|Ga0137386_10578275	All Organisms → cellular organisms → Bacteria → Acidobacteria	808	Open in IMG/M
3300012918\|Ga0137396_10735366	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	727	Open in IMG/M
3300012923\|Ga0137359_11215648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	642	Open in IMG/M
3300012955\|Ga0164298_11079534	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	599	Open in IMG/M
3300012971\|Ga0126369_11105183	All Organisms → cellular organisms → Bacteria → Acidobacteria	882	Open in IMG/M
3300014165\|Ga0181523_10340599	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300014169\|Ga0181531_10312912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	961	Open in IMG/M
3300014501\|Ga0182024_10000790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	83232	Open in IMG/M
3300014501\|Ga0182024_10069521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5345	Open in IMG/M
3300014657\|Ga0181522_10824547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	570	Open in IMG/M
3300017930\|Ga0187825_10270566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	627	Open in IMG/M
3300017933\|Ga0187801_10284573	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	670	Open in IMG/M
3300017934\|Ga0187803_10427004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	539	Open in IMG/M
3300017975\|Ga0187782_11378352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	554	Open in IMG/M
3300018006\|Ga0187804_10046441	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1688	Open in IMG/M
3300018017\|Ga0187872_10397082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	584	Open in IMG/M
3300018040\|Ga0187862_10603919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	649	Open in IMG/M
3300018062\|Ga0187784_10256047	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300018085\|Ga0187772_10486791	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300018085\|Ga0187772_10878150	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	651	Open in IMG/M
3300018088\|Ga0187771_10476953	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300018088\|Ga0187771_11553071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	562	Open in IMG/M
3300020022\|Ga0193733_1052708	Not Available	1148	Open in IMG/M
3300021088\|Ga0210404_10273029	Not Available	924	Open in IMG/M
3300021168\|Ga0210406_10729159	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300021171\|Ga0210405_10643596	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300021181\|Ga0210388_11483687	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	567	Open in IMG/M
3300021401\|Ga0210393_11102537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	641	Open in IMG/M
3300021405\|Ga0210387_10623378	All Organisms → cellular organisms → Bacteria → Acidobacteria	958	Open in IMG/M
3300021420\|Ga0210394_11540108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	561	Open in IMG/M
3300021478\|Ga0210402_11000115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	763	Open in IMG/M
3300021559\|Ga0210409_11072636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	680	Open in IMG/M
3300022557\|Ga0212123_10078392	All Organisms → cellular organisms → Bacteria → Acidobacteria	2803	Open in IMG/M
3300025922\|Ga0207646_11016682	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	732	Open in IMG/M
3300025928\|Ga0207700_11022067	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300025929\|Ga0207664_10585527	Not Available	1002	Open in IMG/M
3300026467\|Ga0257154_1024072	All Organisms → cellular organisms → Bacteria → Acidobacteria	897	Open in IMG/M
3300026890\|Ga0207781_1028375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	545	Open in IMG/M
3300027568\|Ga0208042_1013908	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300027604\|Ga0208324_1000095	All Organisms → cellular organisms → Bacteria → Acidobacteria	53352	Open in IMG/M
3300027696\|Ga0208696_1282614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	510	Open in IMG/M
3300027824\|Ga0209040_10241093	All Organisms → cellular organisms → Bacteria → Acidobacteria	912	Open in IMG/M
3300027842\|Ga0209580_10453016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	639	Open in IMG/M
3300027842\|Ga0209580_10700735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	500	Open in IMG/M
3300027884\|Ga0209275_10055687	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300027884\|Ga0209275_10658281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	602	Open in IMG/M
3300027889\|Ga0209380_10216253	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1126	Open in IMG/M
3300027889\|Ga0209380_10747476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	558	Open in IMG/M
3300027905\|Ga0209415_11060392	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	532	Open in IMG/M
3300028016\|Ga0265354_1004808	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300028047\|Ga0209526_10681089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	650	Open in IMG/M
3300028795\|Ga0302227_10054713	All Organisms → cellular organisms → Bacteria	1815	Open in IMG/M
3300029907\|Ga0311329_10817466	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	593	Open in IMG/M
3300029910\|Ga0311369_11130418	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	610	Open in IMG/M
3300029953\|Ga0311343_11041771	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	639	Open in IMG/M
3300030042\|Ga0302300_1072592	Not Available	1069	Open in IMG/M
3300030056\|Ga0302181_10504899	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	509	Open in IMG/M
3300030399\|Ga0311353_10030120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5767	Open in IMG/M
3300030509\|Ga0302183_10301778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	619	Open in IMG/M
3300030737\|Ga0302310_10451008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	697	Open in IMG/M
3300030746\|Ga0302312_10334473	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	567	Open in IMG/M
3300030862\|Ga0265753_1141839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	515	Open in IMG/M
3300031057\|Ga0170834_111103625	All Organisms → cellular organisms → Bacteria → Acidobacteria	938	Open in IMG/M
3300031236\|Ga0302324_102021713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	722	Open in IMG/M
3300031236\|Ga0302324_103561062	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	504	Open in IMG/M
3300031344\|Ga0265316_10362333	Not Available	1048	Open in IMG/M
3300031718\|Ga0307474_10512216	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300031720\|Ga0307469_11161163	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	728	Open in IMG/M
3300031753\|Ga0307477_10451136	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300031823\|Ga0307478_10709962	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300031912\|Ga0306921_10227782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2184	Open in IMG/M
3300031941\|Ga0310912_10729430	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	767	Open in IMG/M
3300031962\|Ga0307479_12146305	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	506	Open in IMG/M
3300032160\|Ga0311301_12248966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	623	Open in IMG/M
3300032205\|Ga0307472_102082126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	570	Open in IMG/M
3300032782\|Ga0335082_11560357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	532	Open in IMG/M
3300032783\|Ga0335079_11326886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	717	Open in IMG/M
3300032828\|Ga0335080_10900544	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300032892\|Ga0335081_11121439	Not Available	904	Open in IMG/M
3300032893\|Ga0335069_10811103	Not Available	1053	Open in IMG/M
3300032955\|Ga0335076_10550420	Not Available	1036	Open in IMG/M
3300033405\|Ga0326727_10296225	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.52%
Host-Associated	Host-Associated	2.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.64%
Aquatic	Environmental → Aquatic	14.88%
Plants	Host-Associated → Plants	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.90%
Freshwater	Environmental → Aquatic → Freshwater	12.40%
Peat	Environmental → Terrestrial → Peat	10.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.15%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.65%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.65%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.65%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.65%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004134	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF248 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100073918	3300000567	Peatlands Soil	IYIPSMTTEERQRLAEYLRPAGEALNAALAELAKAGQ*
JGI12649J13570_10221882	3300001175	Forest Soil	ICIYIPSMNSDERQRLAEALRAAGAAINAAVADLEKVST*
JGI12635J15846_102631182	3300001593	Forest Soil	VDDITATLRRLCLYIPNMSAEERKRLAEYLRAAGGALNSALADLEKAA*
JGIcombinedJ26739_1014951651	3300002245	Forest Soil	NYVEDITTTLRRICISIPAMNVEERKRLADSLRAAGGALNDAIKDLEKEKVMAQ*
JGI25613J43889_101891522	3300002907	Grasslands Soil	LRRICISIPPMTTEERKRLAESLRTAVGAINAAIADLDKAGPQ*
Ga0062384_1014605122	3300004082	Bog Forest Soil	ITTTLRRICIYIPNMSTEERLRLAESLRTAGGAINAAITDLEKVGP*
Ga0062387_1000301111	3300004091	Bog Forest Soil	RISIYIPAMNTEERKRLAESLRATGVAINTAIADLEKVGP*
Ga0062387_1017414401	3300004091	Bog Forest Soil	RSMNYVDDITTTLRRICISIPAMDAEERKRLADSLRTAGGALNDAIKDLEKEKVEAQ*
Ga0058906_11740782	3300004134	Forest Soil	TATLRRICIYIPAMGAEERKRLADSLRAAGGAINAAIADLEKAEK*
Ga0068971_15383802	3300004477	Peatlands Soil	VEDITATLRRICIYIPGMGAEERKRLADSLRAAGGAIDAAITDLEKAEK*
Ga0066672_106652641	3300005167	Soil	MNYVEDITTTLRRICLSIAPMNTEERKRLADSLRAAAVAINAAITDLEKAGPQ*
Ga0073909_102054642	3300005526	Surface Soil	ITATLRRICIYIPGMSAEERKRLAESLRGTVTAVNAAIADLERAEK*
Ga0070684_1020024481	3300005535	Corn Rhizosphere	TTLRRIAIYIPGMGADERKRLAESMRGAATAINSVIADLEKAEK*
Ga0070732_109528811	3300005542	Surface Soil	EDITATLRRICIYIPGMSAEERKRLAESLRTTVVAVNSAIADLEKADK*
Ga0070762_105537142	3300005602	Soil	YVEDITTTLRRICISIPAMSTEERKRLADSLRVAGGALNEAIGDLEKARP*
Ga0070763_101972901	3300005610	Soil	MNYVEDITATLRRICIYIPNMNAEERKRLAESLRATGGAVNAAIADLEKVGP*
Ga0070764_106125261	3300005712	Soil	PNMSTEERLRLAQVLRATGGAINEAIADLEKVGP*
Ga0070766_102444142	3300005921	Soil	IYIPAMNTEERKRLAESLRATSGAINTAIADLEKVGP*
Ga0070717_109876032	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TLRRICIYIPNMSPEERKRLAESLRGAAAAVNAAVADLEKAEK*
Ga0070717_115933412	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VEDITATLRRICIYIPAMSPDERKRLAEVMRGAAAQVNAAIADLEKVEK*
Ga0075030_1008977271	3300006162	Watersheds	DITATLRRICIYIPSMNAEERKRLAEYLRAADGAVNAAIADLEKAEK*
Ga0070712_1009676072	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RRIAIYIPSMGADERKRLAEVMRGAATAVNSVIADLEKAEK*
Ga0079220_120327531	3300006806	Agricultural Soil	YVEDITATLRRICIYIPAMSPEERKRLAESLRGAANSVNAAIADLEKVEK*
Ga0116214_13668492	3300009520	Peatlands Soil	RRICIYIPNMNTEERQRLAESLRTTGGAINAAIADLEKVGP*
Ga0105237_108704122	3300009545	Corn Rhizosphere	RIAIYIPSMGADERKRLAEAMRGAATAVNSVIADLEKAEK*
Ga0116138_11248131	3300009552	Peatland	LRRICIYIPAMNTEERQRLAESLRATGGAINAAIADLEKVGP*
Ga0116133_10902071	3300009623	Peatland	VEDITATLRRICIYIPGMGADERKRLAESLREAGGAINAAIADLEKAEK*
Ga0116215_14985771	3300009672	Peatlands Soil	TLRRICIYIPAMSSDERKRLAEAMRGAAASVNAAIADLEKVEK*
Ga0116217_106514021	3300009700	Peatlands Soil	MNYVEDITATLRRICIYIPAMNAEERKRLAESLRATGGAINAAIADLEKVGP*
Ga0116223_108052001	3300009839	Peatlands Soil	ICIYIPAMSPDERKRLAEAMRGAAASVNAAIADLEKVEK*
Ga0126373_129071091	3300010048	Tropical Forest Soil	IPSMSADERKRLAEAIRGASAAMNSALADLEKADK*
Ga0126379_107228372	3300010366	Tropical Forest Soil	LRRICIYIPSMNPEERKRLAEVMHKAADSFNAAIADLEKADK*
Ga0136449_1034447201	3300010379	Peatlands Soil	VDDITATLRRICIYIPNMNAEERKRLAESLRGAGGSITAAIADLEKADK*
Ga0126352_10142722	3300010859	Boreal Forest Soil	IRSMNYVEDITTTLRRICIAIPAMNVEERKRLADSLRTAGVALSDAIKDLEKERVVAQ*
Ga0126356_109712331	3300010877	Boreal Forest Soil	TLRRICISIPPMTTEERKRLAESLRTAVGAINAAIADLDKAGPQ*
Ga0137776_17049001	3300010937	Sediment	AIYIPGMTADERKRLAEAMRGAANSLNATLADLEKADK*
Ga0150983_129153931	3300011120	Forest Soil	MNYVEDITNTLRRISISIPPMNTEERKRLADCLRTAGSAINAAVAELEKEGK*
Ga0137388_103588123	3300012189	Vadose Zone Soil	SIPAMHPDERQRLADSLRAAGAAIAAAVADLEKAGK*
Ga0137362_105659381	3300012205	Vadose Zone Soil	ITTTLRRICISIPAMPPDERQRLAESLRAAGAAIAAAVADLEKVGK*
Ga0137386_105782752	3300012351	Vadose Zone Soil	TLRRMCLYIPSMNAEERKRLAEYLRAAGSAVNAAIADLEKVEK*
Ga0137396_107353661	3300012918	Vadose Zone Soil	RRICISIPAMTTEERQRLAQYLRVAGEAINSALGDLEKAGK*
Ga0137359_112156482	3300012923	Vadose Zone Soil	LRRMCLYIPSMNAEERKRLAEYLRAAGGAVNAAIADLEKAEK*
Ga0164298_110795342	3300012955	Soil	ATLRRIAIYIPSMGADERKRLAEVMRGAATAVNSVIADLEKPEK*
Ga0126369_111051832	3300012971	Tropical Forest Soil	YVEDITATLRRICIYIPSMNAEERKRLAEAMRKAAESVNAAIADLEKAEK*
Ga0181523_103405992	3300014165	Bog	TLRRICIAIPAMNVEERKRLADSLRAAGSALNDAIKDLEKERVVAQ*
Ga0181531_103129122	3300014169	Bog	MNYVEDITTTLRRICIYIPNMSTEERKRLAESLRTAGGAINAAIGDLEKAGS*
Ga0182024_1000079054	3300014501	Permafrost	MNYVEDITNTLRRICITIPAMNNEERKRLADSLRAAGGAINAAIADLEKAAQ*
Ga0182024_100695213	3300014501	Permafrost	MNYVEDITTTLRRICISIPAMNVEERKRLADSLRAAGNALNDAIKDLEKERVVAQ*
Ga0181522_108245471	3300014657	Bog	DITTTLRRICIYIPNMSTEERKRLAESLRTAGGAINAAIGDLEKAGS*
Ga0187825_102705661	3300017930	Freshwater Sediment	VEDITATLRRICIYIPSMNSEERKRLAEAMHKAADSFNAAIADLEKAEK
Ga0187801_102845732	3300017933	Freshwater Sediment	VEDITATLRRICIYIPAMSDDERKRLAESLRGAASQVNAAIADLEKAEK
Ga0187803_104270042	3300017934	Freshwater Sediment	YIPSMNTDERKRLAEHLRAAGASVNAAIADLEKAGQ
Ga0187782_113783521	3300017975	Tropical Peatland	IPSMTAEERKRLAEHLRAAGASINAAIADLEKAAQ
Ga0187804_100464411	3300018006	Freshwater Sediment	ICIYIPSMSTDERKRLAEHLRAAGASVNAAIADLEKAGQ
Ga0187872_103970822	3300018017	Peatland	YVDDITTTLRRICIAIPAMNVEERKRLADSLRAAGGALNDAIKDLEKERVVAQ
Ga0187862_106039192	3300018040	Peatland	EDITATLRRICIYIPGMGADERKRLAESLRAAGGAIDAAVADLEKAEK
Ga0187784_102560473	3300018062	Tropical Peatland	YVDDITATLRRISIYIPSMNTEERKRLAEHLRVASAAINAALADLEKAGQ
Ga0187772_104867912	3300018085	Tropical Peatland	ICIAIPSMTAEERRRLAEHLRAAGASINAAIADLEKAGQ
Ga0187772_108781502	3300018085	Tropical Peatland	YVEDITATLRRISTTIPGMTAEEKKRLAEALRAASGLILAAIGDLEKAEK
Ga0187771_104769532	3300018088	Tropical Peatland	YVDDITATLRRIRVSIPSMTADERKRLAEHLRAADASINEAIADLEKAGQ
Ga0187771_115530712	3300018088	Tropical Peatland	ICIAIPSMTAEERQRLAEHLRAAGDAINAAIADLEKAGQ
Ga0193733_10527082	3300020022	Soil	DITTTLRRICISIPAMPPDERQRLAESLRAAGAAIAAAVADLEKAGK
Ga0210404_102730291	3300021088	Soil	TLRRICIYIPAMSPDERKRLAEVMRGAAAQVNAAIADLEKVEK
Ga0210406_107291592	3300021168	Soil	LRRICIYIPAMNTEERKRLAESLRATGGAINAAIVDLEKVGP
Ga0210405_106435962	3300021171	Soil	YIPGMGPDERKRLAESLRAAGGAIDAAVADLEKAEK
Ga0210388_114836871	3300021181	Soil	RRICISIPAMNTDERKRLAESLRTATSAINAAVADLEKAGPQ
Ga0210393_111025371	3300021401	Soil	TVRRMCLYIPSMNAEERKRLAEYLRAAGGAVNAAIADLEKVEK
Ga0210387_106233781	3300021405	Soil	LRRISIYIPAMNTEERKRLAESLRATAVAVNAAIADLEKVGP
Ga0210394_115401081	3300021420	Soil	EDITATLRRICIYIPAMSPDERKRLAEVMRGAAAQVNAAIADLEKVEK
Ga0210402_110001152	3300021478	Soil	DITATLRRICISIPAMNTEERLRLAESLRGVTAAINAAMIDLEKAGK
Ga0210409_110726361	3300021559	Soil	LRRISISIPPMNTEERKRLADCLRTAGSAINAAVAELEKEGK
Ga0212123_100783924	3300022557	Iron-Sulfur Acid Spring	YVEDITTTLRRICIYIPNMSPEERKRLAESLRGAAAAVNAAVADLEKVEK
Ga0207646_110166821	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RRICIYIPGMSAEERKRLAESLRTTVTAVNSAIADLEKVEK
Ga0207700_110220672	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	IPNMSPEERKRLAESLRGAAAAVNAAVADLEKAEK
Ga0207664_105855272	3300025929	Agricultural Soil	SIYIPGMSAEERKRLAEAMRGAADGINSTLAELEKAAK
Ga0257154_10240722	3300026467	Soil	TTLRRMCLYIPSMNAEERKRLAEYLRAAGGAINAAIADLEKVEK
Ga0207781_10283752	3300026890	Tropical Forest Soil	TLRRICIYIPSMNAEERKRLAEALRAAGTSVNAAIADLEKADK
Ga0208042_10139081	3300027568	Peatlands Soil	RICIYIPAMSSDERKRLAEAMRGAAASVNAAIADLEKVEK
Ga0208324_100009522	3300027604	Peatlands Soil	MNYVEDITNTLRRICISIPPMSTEERKRLAESLRTAGAAINAAIVDLEKVGQQ
Ga0208696_12826142	3300027696	Peatlands Soil	TLRRIVIYIPTMTAEERKRLAEYLRVANQSIVEAVAQLEKGGQ
Ga0209040_102410931	3300027824	Bog Forest Soil	TTLRRICIAIPAMNAEERKRLAESLRTAGIALNDAIKDLEKEKVAQ
Ga0209580_104530161	3300027842	Surface Soil	EDITATLRRICIYIPGMSAEERKRLAESLRTTVVAVNSAIADLEKADK
Ga0209580_107007351	3300027842	Surface Soil	ITATLRRICIYIPGMSPEERKRLAESLRTTVVAVNSAIADLEKADK
Ga0209275_100556873	3300027884	Soil	IYIPNMNTEERKRLAESLRATGGAINAAIVDLEKVGP
Ga0209275_106582812	3300027884	Soil	YIPAMNTEERKRLAESLRATSGAINTAIADLEKVGP
Ga0209380_102162532	3300027889	Soil	IYIPAMNTEERKRLAESLRATSGAINTAIADLEKVGP
Ga0209380_107474761	3300027889	Soil	NYVEDITTTLRRICISIPAMSTEERKRLADSLRVAGGALNEAIGDLEKARP
Ga0209415_110603922	3300027905	Peatlands Soil	ITATLRRICIYIPAMSSDERKRLAEAMRGAAASVNAAIADLEKVEK
Ga0265354_10048081	3300028016	Rhizosphere	TVRRLCLYIPSMNTEERQRLAEYLRAAGGALNAAIADLDKVGP
Ga0209526_106810892	3300028047	Forest Soil	TLRRICISIPPMTTEERKRLAESLRTAVGAINAAIADLDKAGPQ
Ga0302227_100547131	3300028795	Palsa	VDDITATLRRLCLYIPNMSAEERKRLAEYLRTAGGALNAALADLEKAG
Ga0311329_108174661	3300029907	Bog	CISIPPMNTEERKRLADSLRAAGIALNAAIADLEKAGPQ
Ga0311369_111304182	3300029910	Palsa	ITATLRRICIYIPNMSTEERLRLAEVLRSTGGAINAAIADLEKVGP
Ga0311343_110417711	3300029953	Bog	IYIPNMSTEERLRLAESLRAAGVAINAAIGDLEKAAQ
Ga0302300_10725921	3300030042	Palsa	RRICIYIPSMTPEERTRLAEYLRAAGSAITAAVADLEKVTP
Ga0302181_105048991	3300030056	Palsa	YIPNMTTEERQRLAESLRATGGAINAAIADLEKVGP
Ga0311353_100301201	3300030399	Palsa	ITTTLRRICISIPAMSVEERKRLADSLRAAGVALNDAIKDLEKEKVMAQ
Ga0302183_103017781	3300030509	Palsa	EDITTTLRRICISIPAMSVEERKRLADSLRAAGVALNDAIKDLEKEKVMAQ
Ga0302310_104510082	3300030737	Palsa	NYVEDITTTLRRICIYIPNMSTEERLRLAESLRAAGVAINAAIGDLEKAAQ
Ga0302312_103344731	3300030746	Palsa	DITTTLRRICISIPAMNVEERKRLADSLRAAGGALNDAIKDLEKEKVAAQ
Ga0265753_11418392	3300030862	Soil	RMCLYIPSMNAEERKRLAEYLRVAGTSVNSAIADLEKVEK
Ga0170834_1111036252	3300031057	Forest Soil	NYVDDITTTLRRMCLYIPSMNAEERKRLAEYLRAAGGAVNAAIADLEKVDK
Ga0302324_1020217132	3300031236	Palsa	TTLRRICISIPPMNTEERKRLADSLRAAGIALNAAIADLEKAGPQ
Ga0302324_1035610621	3300031236	Palsa	SMNYVEDITTTLRRICISIPAMNVEERKRLADSLRAAGGALNDAIKDLEKEKVAAQ
Ga0265316_103623331	3300031344	Rhizosphere	LRRMCLYIPSMNAEERKRLAEYLRAAGASINAAIGDLEKVEK
Ga0307474_105122161	3300031718	Hardwood Forest Soil	RRICISIPAMNAEQRKRLADSLRAAGGALNSAIADLEKAGH
Ga0307469_111611632	3300031720	Hardwood Forest Soil	MNYVEDITTTLRRISISIPAMNAEERKRLADSLRAAGSALNSAISELEKAGH
Ga0307477_104511361	3300031753	Hardwood Forest Soil	TLRRICIYIPAMNAEERKRLAGSLREAGAAVNAAVADLEKVEK
Ga0307478_107099622	3300031823	Hardwood Forest Soil	ITTTLRRMCLYIPSMNAEERKRLAEYLRAAGGAVNAAIADLEKTEK
Ga0306921_102277821	3300031912	Soil	RICIYIPSMNSEERKRLAEAMRKAAESVNAAIADLEKADK
Ga0310912_107294301	3300031941	Soil	DITATLRRICIYIPSMSPDERKRLAEAMHKASDSFNACIADLEKADK
Ga0307479_121463051	3300031962	Hardwood Forest Soil	LRRICIYIPSMNTEERQRLAESLRAAGGAINAAIADLGKPQ
Ga0311301_122489661	3300032160	Peatlands Soil	VDDITATLRRICIYIPNMNAEERKRLAESLRGAGGSITAAIADLEKADK
Ga0307472_1020821261	3300032205	Hardwood Forest Soil	RMCLYIPSMNPEERKRLAEYLRAAGGAVDAAIADLEKADK
Ga0335082_115603572	3300032782	Soil	ITATLRRISIYIPSMNPEERKRLAEAMRGAAAGINATLAELEKAEK
Ga0335079_113268862	3300032783	Soil	ISSMTPEERQRLAAHLKTAGESINATIADLEKAGK
Ga0335080_109005442	3300032828	Soil	TLRRITIYIPGMTPEERKRLAESMRGAANALNATLADLEKADK
Ga0335081_111214391	3300032892	Soil	ATLRRICIYIPSMNPDERKRLAEAMHKAADSFNAAIADLEKAEK
Ga0335069_108111032	3300032893	Soil	DITATLRRICIAIPSMTPEERQRLAEHLRAAGTAINSALADLEKAGK
Ga0335076_105504201	3300032955	Soil	DISATLRRICIYIPAMSGDERKRLADALRVAQTALTAAIADAEKAEK
Ga0326727_102962253	3300033405	Peat Soil	TLRRISIYIPSMNTEERKRLAEYLSPAGEALNAAIADLKKAGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072593

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences