Metagenome / Metatranscriptome Family F072592

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072592
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	40 residues
Representative Sequence	MADANHQGLILDQFTRQATVFSTAPAITDEDALRMIVAAA
Number of Associated Samples	105
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.78 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.04 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.380 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.017 % of family members)
Environment Ontology (ENVO)	Unclassified (32.231 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.669 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.59% β-sheet: 0.00% Coil/Unstructured: 54.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF13602	ADH_zinc_N_2	28.93
PF08240	ADH_N	11.57
PF04909	Amidohydro_2	8.26
PF00107	ADH_zinc_N	5.79
PF00126	HTH_1	3.31
PF13561	adh_short_C2	2.48
PF02668	TauD	2.48
PF00296	Bac_luciferase	2.48
PF01169	UPF0016	1.65
PF03466	LysR_substrate	1.65
PF00450	Peptidase_S10	1.65
PF02515	CoA_transf_3	0.83
PF13683	rve_3	0.83
PF02128	Peptidase_M36	0.83
PF02797	Chal_sti_synt_C	0.83
PF03070	TENA_THI-4	0.83
PF12860	PAS_7	0.83
PF02776	TPP_enzyme_N	0.83
PF01850	PIN	0.83
PF13714	PEP_mutase	0.83
PF00571	CBS	0.83
PF01979	Amidohydro_1	0.83
PF02604	PhdYeFM_antitox	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.48
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.48
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	1.65
COG2939	Carboxypeptidase C (cathepsin A)	Amino acid transport and metabolism [E]	1.65
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.83
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.38 %
Unclassified	root	N/A	25.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.38 %
Unclassified	root	N/A	25.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.38 %
Unclassified	root	N/A	25.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.22 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.65 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.65 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.83 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.83 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.83 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.83 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001537\|A2065W1_11282713	Not Available	583	Open in IMG/M
3300002245\|JGIcombinedJ26739_101160837	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300004082\|Ga0062384_100269658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1042	Open in IMG/M
3300005434\|Ga0070709_10062937	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300005436\|Ga0070713_101357274	Not Available	689	Open in IMG/M
3300005439\|Ga0070711_100656861	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005921\|Ga0070766_11179768	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300006175\|Ga0070712_100981151	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300006804\|Ga0079221_11419163	Not Available	553	Open in IMG/M
3300007258\|Ga0099793_10374686	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300007788\|Ga0099795_10031679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1823	Open in IMG/M
3300009012\|Ga0066710_101454602	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300009089\|Ga0099828_10306445	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300009101\|Ga0105247_10940499	Not Available	670	Open in IMG/M
3300009400\|Ga0116854_1024785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300010048\|Ga0126373_10273281	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300010359\|Ga0126376_11909155	Not Available	634	Open in IMG/M
3300010359\|Ga0126376_13226316	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010376\|Ga0126381_100782854	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300010376\|Ga0126381_101611220	Not Available	938	Open in IMG/M
3300010376\|Ga0126381_103316070	Not Available	635	Open in IMG/M
3300010376\|Ga0126381_104687272	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300010397\|Ga0134124_11104655	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300011271\|Ga0137393_10054776	Not Available	3132	Open in IMG/M
3300011271\|Ga0137393_11160827	Not Available	656	Open in IMG/M
3300011271\|Ga0137393_11406785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300012180\|Ga0153974_1107447	Not Available	636	Open in IMG/M
3300012198\|Ga0137364_10637781	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012205\|Ga0137362_11202195	Not Available	642	Open in IMG/M
3300012208\|Ga0137376_10254861	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300012361\|Ga0137360_10338532	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300012362\|Ga0137361_10409473	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300012683\|Ga0137398_10269326	Not Available	1139	Open in IMG/M
3300012925\|Ga0137419_10895536	Not Available	730	Open in IMG/M
3300012927\|Ga0137416_11275269	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012929\|Ga0137404_12228985	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300012944\|Ga0137410_10477981	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012961\|Ga0164302_11027310	Not Available	645	Open in IMG/M
3300012975\|Ga0134110_10556933	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300013294\|Ga0120150_1022487	Not Available	1280	Open in IMG/M
3300013307\|Ga0157372_12854143	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300014872\|Ga0180087_1086877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	600	Open in IMG/M
3300015245\|Ga0137409_10233398	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300016357\|Ga0182032_10949439	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300016387\|Ga0182040_10220916	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300016387\|Ga0182040_10423190	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300016404\|Ga0182037_11591316	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300017961\|Ga0187778_11286150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	514	Open in IMG/M
3300017975\|Ga0187782_11188417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300017975\|Ga0187782_11499478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300018088\|Ga0187771_11081943	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300019888\|Ga0193751_1087392	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300020170\|Ga0179594_10418237	Not Available	509	Open in IMG/M
3300020199\|Ga0179592_10105381	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300020581\|Ga0210399_11475569	Not Available	529	Open in IMG/M
3300021088\|Ga0210404_10902543	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021178\|Ga0210408_11032711	Not Available	635	Open in IMG/M
3300021402\|Ga0210385_11258786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300021403\|Ga0210397_10214756	All Organisms → cellular organisms → Bacteria → Proteobacteria	1381	Open in IMG/M
3300021420\|Ga0210394_10907533	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300021420\|Ga0210394_11406600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300021433\|Ga0210391_10817234	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300021478\|Ga0210402_11365465	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300021478\|Ga0210402_11781835	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021560\|Ga0126371_11604322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	777	Open in IMG/M
3300022528\|Ga0242669_1083445	Not Available	596	Open in IMG/M
3300022726\|Ga0242654_10340182	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300023046\|Ga0233356_1045268	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300025916\|Ga0207663_11157606	Not Available	622	Open in IMG/M
3300025927\|Ga0207687_11480298	Not Available	583	Open in IMG/M
3300026078\|Ga0207702_10540446	Not Available	1139	Open in IMG/M
3300026116\|Ga0207674_11260087	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300026330\|Ga0209473_1271226	Not Available	574	Open in IMG/M
3300026557\|Ga0179587_10141116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1495	Open in IMG/M
3300027029\|Ga0208731_1040401	Not Available	513	Open in IMG/M
3300027575\|Ga0209525_1119018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300027619\|Ga0209330_1155939	Not Available	514	Open in IMG/M
3300027824\|Ga0209040_10458374	Not Available	578	Open in IMG/M
3300030524\|Ga0311357_11707878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300030730\|Ga0307482_1037861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1115	Open in IMG/M
3300030740\|Ga0265460_10020827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1858	Open in IMG/M
3300031091\|Ga0308201_10285689	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031236\|Ga0302324_101358960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	933	Open in IMG/M
3300031543\|Ga0318516_10074503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1887	Open in IMG/M
3300031543\|Ga0318516_10531492	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031544\|Ga0318534_10360235	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031561\|Ga0318528_10196346	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300031561\|Ga0318528_10484533	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031561\|Ga0318528_10638514	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031679\|Ga0318561_10605446	Not Available	603	Open in IMG/M
3300031680\|Ga0318574_10230630	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300031682\|Ga0318560_10415058	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300031682\|Ga0318560_10654944	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031718\|Ga0307474_10045448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3240	Open in IMG/M
3300031719\|Ga0306917_10937990	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031724\|Ga0318500_10062217	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300031744\|Ga0306918_10415628	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300031765\|Ga0318554_10649076	Not Available	593	Open in IMG/M
3300031768\|Ga0318509_10461357	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031770\|Ga0318521_10885626	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031777\|Ga0318543_10526297	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031781\|Ga0318547_10266234	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300031792\|Ga0318529_10107777	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300031797\|Ga0318550_10342280	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300031797\|Ga0318550_10579446	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031819\|Ga0318568_10277366	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300031821\|Ga0318567_10424487	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031835\|Ga0318517_10426071	Not Available	599	Open in IMG/M
3300031846\|Ga0318512_10169343	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300031893\|Ga0318536_10649134	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031894\|Ga0318522_10016066	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300031896\|Ga0318551_10020450	All Organisms → cellular organisms → Bacteria	3071	Open in IMG/M
3300031897\|Ga0318520_10449977	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031942\|Ga0310916_10291668	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300031942\|Ga0310916_11191652	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031954\|Ga0306926_10085387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3848	Open in IMG/M
3300032063\|Ga0318504_10652397	Not Available	506	Open in IMG/M
3300032090\|Ga0318518_10351507	Not Available	757	Open in IMG/M
3300032091\|Ga0318577_10382295	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300032174\|Ga0307470_11934943	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300032892\|Ga0335081_12321216	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.04%
Host-Associated	Host-Associated	4.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.56%
Plants	Host-Associated → Plants	4.13%
Aquatic	Environmental → Aquatic	2.48%
Fungi	Host-Associated → Fungi	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.48%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Peat	Environmental → Terrestrial → Peat	1.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%
Mycelium	Host-Associated → Fungi → Mycelium	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.51%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.02%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014872	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2065W1_112827131	3300001537	Permafrost	MTEDAHQSLIRDQFTRQATPFSTAAPIADAGALKMIVAAAEAGPA
JGIcombinedJ26739_1011608372	3300002245	Forest Soil	MTEAAHSNLIRDQFTRQATPFSTAAPIANEAALKLIVE
Ga0062384_1002696581	3300004082	Bog Forest Soil	MTNQAHSSLIRDKFTRQATPFSTATPITDAGALKMIIDVAAPGPDDTL
Ga0070709_100629374	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTDTSHKGLILDQFTRQATVFSTAAPITNADALRMIIEAA
Ga0070713_1013572741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDISHQDRILDQFSRQAMPFSTAAPITDGNALRMIVEAAAPKPNDTLLDVA
Ga0070711_1006568611	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTDAAHQNLIREQFTRQATPFSTAAPIANEAALKLIIDAAR
Ga0070766_111797681	3300005921	Soil	MTDAAHSSLIRDQFTRQATPFSTAAPIANEAALKLIVDAAGAGP
Ga0070712_1009811512	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTDAAHQDLIRDQFTRQATPFSTAAPIANEAALKLIIDAAR
Ga0079221_114191631	3300006804	Agricultural Soil	MTDASHQGLILDQFTRQAALFSTAAPITNADALQMI
Ga0099793_103746861	3300007258	Vadose Zone Soil	MADANHQELILDQFTRQATVFSTAPAITDEEALGMIIRAAR
Ga0099795_100316794	3300007788	Vadose Zone Soil	MADANHQGLILDQFTRQATLFSTAPAITDEGALRMIVEAGRPG
Ga0066710_1014546022	3300009012	Grasslands Soil	MTEVSHSSLIRDQFTRQATPFSTAAPIADPATEPSPPRT
Ga0099828_103064453	3300009089	Vadose Zone Soil	MTDAAHNSLIRDQFTRQATPFSTAAPIADAGALTLIVEAAE
Ga0105247_109404991	3300009101	Switchgrass Rhizosphere	MKRTMSDTTHQQRILDQFTRQATPFSTAQTITDANALR
Ga0116854_10247851	3300009400	Soil	MTDASHDALIRDQFTRQATVFNTAAPIKNEDALRAIV
Ga0126373_102732811	3300010048	Tropical Forest Soil	MSDTAHQDLILDQFTRQATVFNTAAPIANADALKVIVDAAA
Ga0126376_119091552	3300010359	Tropical Forest Soil	MSDADHQDLILDQFTRQATVFSTAPSITDEDALRR
Ga0126376_132263161	3300010359	Tropical Forest Soil	MADADHQGLILDQFTRQATVFSTAPSITDERALQMIV
Ga0126381_1007828541	3300010376	Tropical Forest Soil	MTDVNHQDLILDQFTRQATVFSTAPTITDQEALKMIVEAARPTSDDRL
Ga0126381_1016112201	3300010376	Tropical Forest Soil	MSDTSHHDLILDQFTRQATVFSTAPTITDEDALRMIVDAA
Ga0126381_1033160701	3300010376	Tropical Forest Soil	MSDTAHQARILDQFTRQATPFSTAQTITDTNALQMVVEAVA
Ga0126381_1046872721	3300010376	Tropical Forest Soil	MTTTDHQDLILDQFTRQATLFSTAAPITNEGALRMIVEAAR
Ga0134124_111046552	3300010397	Terrestrial Soil	MTDTSHQGLILDQFTRQATLFSSAAPITNADALQMVVEAARPEP
Ga0137393_100547764	3300011271	Vadose Zone Soil	MTDANHQDLILDQFTRQATVFSTAPAITDEEALGMIVR
Ga0137393_111608271	3300011271	Vadose Zone Soil	MSDDLHQSLIRDQFTRQATPFSTAAPIADAGALWMI
Ga0137393_114067851	3300011271	Vadose Zone Soil	MTDTTHDALIRDQFTRQATVFNAAAPIAAEDALQKI
Ga0153974_11074472	3300012180	Attine Ant Fungus Gardens	MTEATHQDLILDQFTRQATIFSSAPAITDERALRMIVEA
Ga0137364_106377812	3300012198	Vadose Zone Soil	MTGTNHQGLILDQFTRQATVFSTAPAITDQDALRM
Ga0137362_112021951	3300012205	Vadose Zone Soil	MTDAAHNSLIRGQFTRQASPFSTAAPIADAGALTL
Ga0137376_102548613	3300012208	Vadose Zone Soil	MTDAAHQSLIRDQFTRQATPFSTAAPIASEAALRMIIDAARPGLDD
Ga0137360_103385322	3300012361	Vadose Zone Soil	MADANHQDLILDQFTRQATAFSTAPAITDEEAPGMII
Ga0137361_104094732	3300012362	Vadose Zone Soil	MADANHQELILDQLTRQATVFSTAPAITDEEALGMIIRAARPTPGDRLLD
Ga0137398_102693261	3300012683	Vadose Zone Soil	MTDAAHQSLIRDQFTRQATPFSTAAPIASEATLRMI
Ga0137419_108955361	3300012925	Vadose Zone Soil	MTDAAHQSLIRDQFTRQATPFSTAAPIASEAALQLIIDAAQPGPD
Ga0137416_112752691	3300012927	Vadose Zone Soil	MADANHQGLILDQFTRQATVFSTAPAITDEDALKVIVEAARPGA
Ga0137404_122289852	3300012929	Vadose Zone Soil	MTATDHQSLILDQFTRQATLFSTAAPITNEDALLKIVEAARPS
Ga0137410_104779812	3300012944	Vadose Zone Soil	MTDATHQGLILDQFTRQATVFSTAAPITNESALRM
Ga0164302_110273101	3300012961	Soil	MKRTMSDTTHQQRILDQFTRQATPFSTAQTITDANALRMIVEAAAPR
Ga0134110_105569331	3300012975	Grasslands Soil	MTDAAHQDLIRDQFTRQATPFSTAAPIANEAALKLIIDAA
Ga0120150_10224871	3300013294	Permafrost	MTEDAHQSLIRDQFTRQATPFSTAAPMADAGALKMIVPAA
Ga0157372_128541431	3300013307	Corn Rhizosphere	MSDAGHQERILDQFTRQATPFSTANTITDANALRMI
Ga0180087_10868772	3300014872	Soil	MTDDAHSGLIRDQFTRQATPFSTAAPIADAGALRMIVEAAEAGP
Ga0137409_102333984	3300015245	Vadose Zone Soil	MTDATHQGLILDQFTRQATVFSTAAPITNESALRMVIEAAEADR
Ga0182032_109494392	3300016357	Soil	MTNEPAIAKNAHDRLIRDQFTRQAVPFSTAGPITDPGALQAIVAAAAPGR
Ga0182040_102209163	3300016387	Soil	MSDTSHQDLILDQFTRQATVFSTASTITDEDALRMIVE
Ga0182040_104231902	3300016387	Soil	MTDPKHQDLILDQFTRQASPFSAAAMITDEAALGMIVEAAHA
Ga0182037_115913161	3300016404	Soil	MTEAGHQDLIRDQFTRQATVFSTAAPITDEHALQMIVAAAK
Ga0187778_112861502	3300017961	Tropical Peatland	MTDTHSELIRDQFTRQATAFSTAAPITDAGALEMIAAAAAA
Ga0187782_111884171	3300017975	Tropical Peatland	MNDPNHQELILDQFTRQATVFSTAAAITDEQALRMVVE
Ga0187782_114994781	3300017975	Tropical Peatland	MTEAAHRDLIRDQFTRQASVFNAAAPLAAEDALKLIVD
Ga0187771_110819431	3300018088	Tropical Peatland	MSEIAHQDLILDQFTRQAVVFNAAASVANADALQLIVEA
Ga0193751_10873921	3300019888	Soil	MSDDLHQSLIRDQFTRQATPFSTAAPIADVSALKMIVEAAEA
Ga0179594_104182371	3300020170	Vadose Zone Soil	MTEANHQDLILDQFTRQATVFSTAPAITDEEALGMIVRA
Ga0179592_101053811	3300020199	Vadose Zone Soil	MADANHQGLILDQFTRQATLFSTAPAITDEDALRMIVEAGRP
Ga0210399_114755691	3300020581	Soil	MADANHQGLILDQFTRQATVFSTAPAITDEDALRMIVAAARPG
Ga0210404_109025431	3300021088	Soil	MTDASHQGLILDQFTRQATLFSTAAPITNADAVRMIVEAARP
Ga0210408_110327112	3300021178	Soil	MTNTAHNERILDQFTRQATPFSTAATITDAAALRLIV
Ga0210385_112587861	3300021402	Soil	MTDSAHDELIRDQFTRQSQVFNAAAPIANEDQLKLIVD
Ga0210397_102147561	3300021403	Soil	MSDTHQDLIRDQFTRQATVFNAAAPIAAEDALSKIVAA
Ga0210394_109075331	3300021420	Soil	MSDKAHSSLILDQFTRQATPFSTASPITDAGALRMIVDAAAP
Ga0210394_114066003	3300021420	Soil	MTDAVHQDLIRDQFTRQASVFNAAAPIANADALQLIVDA
Ga0210391_108172343	3300021433	Soil	MSDTTHQDLIRDQFTRQATVFNAAAPIAAEDALAMIVAAA
Ga0210402_113654651	3300021478	Soil	MADANHQELILDQFTRQATVFSTAPAITDEEALGMIIRAARPT
Ga0210402_117818352	3300021478	Soil	MADANHQGLILDQFTRQATVFSTAPAITDEDALRMIVAAA
Ga0126371_116043222	3300021560	Tropical Forest Soil	MPTSRPSEHQHEILDQFTRQATPFATAPGIRDEAA
Ga0242669_10834451	3300022528	Soil	MTDTGHQGLILDQFTRQAALFSTAAPITNAGALRMIVDA
Ga0242654_103401821	3300022726	Soil	MADANHQDLILDQFTRQATVFSTAAAITDEDALRMIVEAARP
Ga0233356_10452682	3300023046	Soil	MTDTGHQGLILDQFTRQAALFSTAAPITNADAVRMIVEAARPGP
Ga0207663_111576061	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSQTITHQDRILDQFTRQATPFSTAGTITDTNALRMIVEAAA
Ga0207687_114802981	3300025927	Miscanthus Rhizosphere	MSDPTMSDAGHQARILDQFTRQAMPFSTASPITDAGALSM
Ga0207702_105404462	3300026078	Corn Rhizosphere	MSDTSHQDRILDQFSRQAMPFSTAAPITDANALRMTV
Ga0207674_112600873	3300026116	Corn Rhizosphere	MTDAAHQNLIREQFTRQATPFSTAAPIANEAALKLII
Ga0209473_12712261	3300026330	Soil	MTGASHQGLILDQFTRQAALFSTAAPITNADTLHMIVEAARP
Ga0179587_101411161	3300026557	Vadose Zone Soil	MADANHQGLILDQFTRQATLFSTAPAITDEGALRMI
Ga0208731_10404012	3300027029	Forest Soil	MPNDTHSRLIRDQFTRQATPFSTASPITDVGALQMI
Ga0209525_11190181	3300027575	Forest Soil	MTDTTHDALIRDQFTRQAGVFNAAAPIANEDALKLIVAA
Ga0209330_11559391	3300027619	Forest Soil	MSDTAHQDLILDQFTRQATPFSTADTITDANALRMIVAAA
Ga0209040_104583741	3300027824	Bog Forest Soil	MTDASHHDLILDQFTRQATVFSSAAAITDEDALRMIVDAARPAA
Ga0311357_117078782	3300030524	Palsa	MTDTAHQDLIRDQFTRQATVFNAAAPIAAEDALKLIVESGRPGPDDG
Ga0307482_10378611	3300030730	Hardwood Forest Soil	MTEASHQGLILDQFTRQAAVFSTAAPITNADALRMIV
Ga0265460_100208271	3300030740	Soil	MTNEAHGSLIRDQFTRQATPFSTAMPITDAGALRMIVDAAAPEP
Ga0308201_102856891	3300031091	Soil	MSGISHDDLIRDQFTRQAIPFNTAAPISDERALAMVVAAAKPRTSDDV
Ga0302324_1013589601	3300031236	Palsa	MTDAMHDTLIRDQFTRQAEVFNAAAPIANKDALQLI
Ga0318516_100745034	3300031543	Soil	MTEAGHQDLIRDQFTRQATVFSTAAPITDEHALQMIVA
Ga0318516_105314922	3300031543	Soil	MTDATHQDLILDQFTRQATVFSTAPAITDEDALQM
Ga0318534_103602351	3300031544	Soil	MTDATHQDLILDQFTRQATVFSTAPAITDEDVLQMIVQAARPTPN
Ga0318528_101963462	3300031561	Soil	MTEAGHQDLIRDQFTRQATVFSTAAPITDEHALQMIVAAA
Ga0318528_104845331	3300031561	Soil	MANEAHSDLIRDQFTRQATPFSTANPITDAGALDMIVA
Ga0318528_106385141	3300031561	Soil	MTDATHQDLILDQFTRQATVFSTAPAITDEDVLQMIVQA
Ga0318561_106054461	3300031679	Soil	MGDSTHQERILDQFTRQATPFSTASPITDANALRM
Ga0318574_102306302	3300031680	Soil	MTDVTHQDLILDQFTRQAAVFGTAPAITDEAGTAGY
Ga0318560_104150583	3300031682	Soil	MTNANHGDLILDQFTRQATVFSTAPTITDEDALQMIVE
Ga0318560_106549441	3300031682	Soil	MSDTSHQDLILDQFTRQATVFSTASTITDEDALRMIVEAARP
Ga0307474_100454481	3300031718	Hardwood Forest Soil	MSQTTHQDRILDQFTRQATPFSTAGTITDANALRMIVEAAAPRPG
Ga0306917_109379902	3300031719	Soil	MTDATHQDLILDQFTRQATVFSTAPAITDEDAPQMIVQATRP
Ga0318500_100622171	3300031724	Soil	MTDTSHQNLILDQFTRQATVFSTAPTITDEDALRMIVEAARPTSD
Ga0306918_104156282	3300031744	Soil	MTTANHEDLILDQFTRQATVFSTAPSITDEGALQMLVAAARPG
Ga0318554_106490762	3300031765	Soil	MTNANHGDLILDQFTRQATVFSTAPTITDEDAMQMI
Ga0318509_104613571	3300031768	Soil	MTDATHQDLILDQFTRQATVFSTAPTITDEDALQM
Ga0318521_108856261	3300031770	Soil	MANEAHSDLIRDQFTRQATPFSTANPITDAGELDMIVA
Ga0318543_105262972	3300031777	Soil	VSQPSHNDLILDQFTRQATPFSTASTITDAAALKLIVET
Ga0318547_102662342	3300031781	Soil	MTDATHQDLILDQFTRQATVFSTAPAITDEDVLQMIVQAARPTPND
Ga0318529_101077771	3300031792	Soil	MTDATHQDLILDQFTRQARVFSTATAITDEDALRMIV
Ga0318550_103422801	3300031797	Soil	MMDANHEDLILDQFTRQATVFSTAPTITDEDALQMIVEAARPG
Ga0318550_105794462	3300031797	Soil	MADANHQELILDQFTRQATLFSTAAAITNESALRMI
Ga0318568_102773661	3300031819	Soil	MTDTDHQELILDQFTRQATVFSTAPAITDEDALKM
Ga0318567_104244872	3300031821	Soil	MTEAGHQDLIRDQFTRQATVFSTAAPITDEHALQM
Ga0318517_104260711	3300031835	Soil	MTDATHQDLILDQFTRQATVFSTATAITDEDALRM
Ga0318512_101693431	3300031846	Soil	MADANHQELILDQFTRQATLFSTAAAITNESALRM
Ga0318536_106491342	3300031893	Soil	MTDATHQDLILDQFTRQATVFSIAPAITDEDALQMIVQAARPTLNDRLLDV
Ga0318522_100160664	3300031894	Soil	MTNANHGDLILDQFTRQATVFSTAPTITDEDALQMIVEAARPG
Ga0318551_100204501	3300031896	Soil	MTDATHQDLILDQFTRQATVFSTAPTITDEDALQMIVEAARPG
Ga0318520_104499771	3300031897	Soil	MSDTSHQDLILDQFTRQATVFSTASTITDEDALRMIV
Ga0310916_102916683	3300031942	Soil	MTEAGHQDLIRDQFTRQATVFSTAAPITDERALQMIVG
Ga0310916_111916521	3300031942	Soil	MTNANHGDLILVQFTRQATVFSTAPTITDEDALQM
Ga0306926_100853871	3300031954	Soil	VTDATHQDLILDQFTRQATVFSTAPAITDEEALTMIVEAA
Ga0318504_106523972	3300032063	Soil	MTDTNHQNLILDQFTRQATVFSTATTITDEGALRM
Ga0318518_103515071	3300032090	Soil	MTDTDHQELILDQFTRQATVFSTAPAITDEDALKMIVAAA
Ga0318577_103822951	3300032091	Soil	MTDTNHQNLILDQFTRQATVFSTAPTITDEGALRMIVEAA
Ga0307470_119349432	3300032174	Hardwood Forest Soil	MADANHQDLILDQFTRQATVFSTAPAITDEEALGMIIRAARPSP
Ga0335081_123212161	3300032892	Soil	MTGDTHSSLIRDQFTRQATPFSTAAPIADERALRLIVEAAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072592

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences