Metagenome Family F072576

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072576
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	38 residues
Representative Sequence	MIPEIDIWRAAQLMLKRYGDKALEESAARADELAA
Number of Associated Samples	89
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.82 %
% of genes near scaffold ends (potentially truncated)	79.34 %
% of genes from short scaffolds (< 2000 bps)	86.78 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.851 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.066 % of family members)
Environment Ontology (ENVO)	Unclassified (57.025 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.587 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.03% β-sheet: 0.00% Coil/Unstructured: 53.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF07883	Cupin_2	3.31
PF04392	ABC_sub_bind	1.65
PF05016	ParE_toxin	1.65
PF00892	EamA	1.65
PF04679	DNA_ligase_A_C	1.65
PF00296	Bac_luciferase	0.83
PF07366	SnoaL	0.83
PF13229	Beta_helix	0.83
PF14534	DUF4440	0.83
PF01526	DDE_Tnp_Tn3	0.83
PF13424	TPR_12	0.83
PF13683	rve_3	0.83
PF07721	TPR_4	0.83
PF00171	Aldedh	0.83
PF00884	Sulfatase	0.83
PF10686	YAcAr	0.83
PF12973	Cupin_7	0.83
PF14312	FG-GAP_2	0.83
PF00313	CSD	0.83
PF00589	Phage_integrase	0.83
PF00872	Transposase_mut	0.83
PF08388	GIIM	0.83
PF00665	rve	0.83
PF07045	DUF1330	0.83
PF13701	DDE_Tnp_1_4	0.83
PF00903	Glyoxalase	0.83
PF00107	ADH_zinc_N	0.83
PF07484	Collar	0.83
PF01420	Methylase_S	0.83
PF00106	adh_short	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.65
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.65
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.83
COG0732	Restriction endonuclease S subunit	Defense mechanisms [V]	0.83
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.83
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.83
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.83
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.83
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.83
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.83
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.83
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.83

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
All Organisms	root	All Organisms	42.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
cellular organisms	root	All Organisms → cellular organisms	42.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.01 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.79 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.61 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	4.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.48 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.65 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.65 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	1.65 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.96 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.65 %
Altererythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter	0.83 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.83 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.83 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.96 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.65 %
Altererythrobacter segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → Altererythrobacter segetis	0.83 %
Candidatus Didemnitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Candidatus Didemnitutus	0.83 %
Magnetospirillum magnetotacticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magnetotacticum	0.83 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.96 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.65 %
unclassified Candidatus Didemnitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Candidatus Didemnitutus → unclassified Candidatus Didemnitutus	0.83 %
Altererythrobacter segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → Altererythrobacter segetis	0.83 %
Magnetospirillum magnetotacticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magnetotacticum	0.83 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.96 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.65 %
Candidatus Didemnitutus sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Candidatus Didemnitutus → unclassified Candidatus Didemnitutus → Candidatus Didemnitutus sp.	0.83 %
Altererythrobacter segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → Altererythrobacter segetis	0.83 %
Magnetospirillum magnetotacticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magnetotacticum	0.83 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101835549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magnetotacticum	507	Open in IMG/M
3300006175\|Ga0070712_101850594	Not Available	529	Open in IMG/M
3300006755\|Ga0079222_11925445	Not Available	578	Open in IMG/M
3300007258\|Ga0099793_10492628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	609	Open in IMG/M
3300010046\|Ga0126384_12473057	Not Available	504	Open in IMG/M
3300010048\|Ga0126373_13034396	Not Available	523	Open in IMG/M
3300010162\|Ga0131853_10935817	Not Available	676	Open in IMG/M
3300010361\|Ga0126378_10577967	Not Available	1238	Open in IMG/M
3300010361\|Ga0126378_13226850	Not Available	519	Open in IMG/M
3300010361\|Ga0126378_13349250	Not Available	509	Open in IMG/M
3300010362\|Ga0126377_10486281	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300010366\|Ga0126379_10077773	Not Available	2859	Open in IMG/M
3300010373\|Ga0134128_12486148	Not Available	571	Open in IMG/M
3300010376\|Ga0126381_101628560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	933	Open in IMG/M
3300011120\|Ga0150983_11417118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300012169\|Ga0153990_1107828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300012202\|Ga0137363_10456950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1069	Open in IMG/M
3300012211\|Ga0137377_10620805	Not Available	1017	Open in IMG/M
3300012683\|Ga0137398_11005946	Not Available	578	Open in IMG/M
3300012923\|Ga0137359_10426221	Not Available	1175	Open in IMG/M
3300012971\|Ga0126369_11162061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	861	Open in IMG/M
3300012971\|Ga0126369_11275947	Not Available	824	Open in IMG/M
3300012971\|Ga0126369_13147818	Not Available	540	Open in IMG/M
3300015264\|Ga0137403_10172838	Not Available	2111	Open in IMG/M
3300016319\|Ga0182033_10781384	Not Available	840	Open in IMG/M
3300016357\|Ga0182032_10654507	Not Available	878	Open in IMG/M
3300016357\|Ga0182032_10711456	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300016357\|Ga0182032_11470790	Not Available	591	Open in IMG/M
3300016371\|Ga0182034_11580046	Not Available	576	Open in IMG/M
3300016371\|Ga0182034_11589579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300016404\|Ga0182037_11342832	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300016422\|Ga0182039_11606927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300016422\|Ga0182039_11815321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300017656\|Ga0134112_10525740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300017821\|Ga0187812_1221307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Candidatus Didemnitutus → unclassified Candidatus Didemnitutus → Candidatus Didemnitutus sp.	604	Open in IMG/M
3300017955\|Ga0187817_10975093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300020580\|Ga0210403_10565223	Not Available	921	Open in IMG/M
3300021168\|Ga0210406_11186619	Not Available	556	Open in IMG/M
3300021170\|Ga0210400_11436667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	549	Open in IMG/M
3300021171\|Ga0210405_11082616	Not Available	600	Open in IMG/M
3300021171\|Ga0210405_11182682	Not Available	567	Open in IMG/M
3300021178\|Ga0210408_10554015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	912	Open in IMG/M
3300021180\|Ga0210396_10115705	Not Available	2420	Open in IMG/M
3300021402\|Ga0210385_10659930	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300021403\|Ga0210397_10897553	Not Available	686	Open in IMG/M
3300021405\|Ga0210387_10642846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	942	Open in IMG/M
3300021406\|Ga0210386_10566573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	981	Open in IMG/M
3300021407\|Ga0210383_10550110	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
3300021439\|Ga0213879_10126401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300021475\|Ga0210392_11098922	Not Available	596	Open in IMG/M
3300021478\|Ga0210402_11023325	Not Available	753	Open in IMG/M
3300021478\|Ga0210402_11843513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	531	Open in IMG/M
3300021479\|Ga0210410_11135591	Not Available	672	Open in IMG/M
3300021479\|Ga0210410_11718204	Not Available	521	Open in IMG/M
3300025929\|Ga0207664_11313205	Not Available	643	Open in IMG/M
3300026551\|Ga0209648_10120795	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300031469\|Ga0170819_11259976	Not Available	586	Open in IMG/M
3300031545\|Ga0318541_10128429	All Organisms → cellular organisms → Bacteria → Proteobacteria	1380	Open in IMG/M
3300031545\|Ga0318541_10376104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300031545\|Ga0318541_10771432	Not Available	536	Open in IMG/M
3300031546\|Ga0318538_10222748	Not Available	1010	Open in IMG/M
3300031680\|Ga0318574_10256372	Not Available	1012	Open in IMG/M
3300031708\|Ga0310686_102181872	Not Available	577	Open in IMG/M
3300031708\|Ga0310686_106185711	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300031713\|Ga0318496_10565848	Not Available	628	Open in IMG/M
3300031719\|Ga0306917_11345652	Not Available	552	Open in IMG/M
3300031724\|Ga0318500_10067066	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300031736\|Ga0318501_10847302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300031744\|Ga0306918_10741655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Altererythrobacter → Altererythrobacter segetis	768	Open in IMG/M
3300031744\|Ga0306918_10877336	Not Available	699	Open in IMG/M
3300031744\|Ga0306918_11359732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300031763\|Ga0318537_10033525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1835	Open in IMG/M
3300031770\|Ga0318521_10619867	Not Available	655	Open in IMG/M
3300031771\|Ga0318546_10850285	Not Available	642	Open in IMG/M
3300031777\|Ga0318543_10254777	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300031777\|Ga0318543_10523849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	531	Open in IMG/M
3300031777\|Ga0318543_10578704	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300031778\|Ga0318498_10119545	Not Available	1198	Open in IMG/M
3300031795\|Ga0318557_10609538	Not Available	501	Open in IMG/M
3300031805\|Ga0318497_10287429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300031819\|Ga0318568_10179323	Not Available	1303	Open in IMG/M
3300031821\|Ga0318567_10608032	Not Available	621	Open in IMG/M
3300031832\|Ga0318499_10386464	Not Available	536	Open in IMG/M
3300031879\|Ga0306919_10342342	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300031879\|Ga0306919_10688620	Not Available	787	Open in IMG/M
3300031893\|Ga0318536_10464554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300031893\|Ga0318536_10524125	Not Available	595	Open in IMG/M
3300031893\|Ga0318536_10654282	Not Available	524	Open in IMG/M
3300031912\|Ga0306921_10192892	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300031941\|Ga0310912_11313068	Not Available	548	Open in IMG/M
3300031942\|Ga0310916_10268360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1441	Open in IMG/M
3300031942\|Ga0310916_10322155	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300031945\|Ga0310913_11095534	Not Available	556	Open in IMG/M
3300031946\|Ga0310910_10829827	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031947\|Ga0310909_11159389	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300031959\|Ga0318530_10401039	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031981\|Ga0318531_10027266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2323	Open in IMG/M
3300031981\|Ga0318531_10440239	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300032025\|Ga0318507_10049720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1643	Open in IMG/M
3300032035\|Ga0310911_10926080	Not Available	502	Open in IMG/M
3300032063\|Ga0318504_10570014	Not Available	543	Open in IMG/M
3300032068\|Ga0318553_10528655	Not Available	618	Open in IMG/M
3300032076\|Ga0306924_11761347	Not Available	647	Open in IMG/M
3300032091\|Ga0318577_10600204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300032094\|Ga0318540_10394440	Not Available	669	Open in IMG/M
3300032094\|Ga0318540_10510352	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300032261\|Ga0306920_100592229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1641	Open in IMG/M
3300032261\|Ga0306920_103134487	Not Available	621	Open in IMG/M
3300033289\|Ga0310914_10228630	Not Available	1667	Open in IMG/M
3300033289\|Ga0310914_10298302	Not Available	1453	Open in IMG/M
3300033289\|Ga0310914_11365611	Not Available	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.35%
Host-Associated	Host-Associated	1.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.69%
Aquatic	Environmental → Aquatic	1.65%
Arthropoda	Host-Associated → Arthropoda	0.83%
Fungi	Host-Associated → Fungi	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.69%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.83%
Mycelium	Host-Associated → Fungi → Mycelium	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.56%
Loam	Environmental → Terrestrial → Soil → Loam	4.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	71.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.83%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1018355491	3300002245	Forest Soil	VIPEIDIWRAATLMLRRYGDKAEEQSAPRVDDLTTEGD
Ga0070712_1018505941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIPEIDIWRAASLMLKRYGEKALEESAARADELFAEQDHD
Ga0079222_119254452	3300006755	Agricultural Soil	PENDIWRAANLMLKRYGEKALEESEARADELAAPTITTA*
Ga0099793_104926281	3300007258	Vadose Zone Soil	VIPEIDIWRAADLMLKRYGEQALAESSTRADELAAGGD
Ga0126384_124730572	3300010046	Tropical Forest Soil	VIPEIDIWRAANLTFKRYGDEALDESSARADELAAGEDQS
Ga0126373_130343962	3300010048	Tropical Forest Soil	VIPEIDIWRAATLMLKRYGDTALEQSIMRADELAADGDHA
Ga0131853_109358172	3300010162	Termite Gut	VIPEIDIWRAANLMLKRYGEKALQESAARADELSRLR*
Ga0126378_105779671	3300010361	Tropical Forest Soil	VIPEIDIWRAATLMLKRYGHEALEQSDLRIDELTAVGDHDGADTW
Ga0126378_132268503	3300010361	Tropical Forest Soil	VIPEIDIWRAANLMLKRYGEKALEESVMRADELATVGDYNGA
Ga0126378_133492501	3300010361	Tropical Forest Soil	LAACGVIPEIDIWRAVLLLLKRYGERALDESTARADELALA
Ga0126377_104862812	3300010362	Tropical Forest Soil	VIPEIDIWRAATLMLKRYGDKALEQSATRADELAADLRLSC*
Ga0126379_100777736	3300010366	Tropical Forest Soil	MIPEIDIWRAAQLMLKRYGDKALEESAACADELAAAGE*
Ga0126379_137591791	3300010366	Tropical Forest Soil	MISEVDIWRVANLMLTRYGDEAMLEGAQRAHELVADGDRAGAATWL
Ga0134128_124861483	3300010373	Terrestrial Soil	MFPEKDIWRAATLMLRRYRDKALEESATRADQLDA
Ga0126381_1016285601	3300010376	Tropical Forest Soil	MIPEIDIWRVANRMLKHYGDDAEAESAIRMQELAL
Ga0150983_114171181	3300011120	Forest Soil	VIPEIDIWRVANLMLMRYGDKAVAEGTKRAEELAADGDL
Ga0153990_11078282	3300012169	Attine Ant Fungus Gardens	VIPEIDIWRAANLMLNRCGENALEESAARADELAAGGDH
Ga0137363_104569501	3300012202	Vadose Zone Soil	VCRFGGVIPEIDVWGAANLMLKRHGERTFEESTARAEE
Ga0137377_106208052	3300012211	Vadose Zone Soil	VIPEIDIWGAAQLMLKRYGDKAFEESAARADELVAA
Ga0137398_110059463	3300012683	Vadose Zone Soil	MIPEIDIWRAASLMLKRCGEKALEESAARADELFAE
Ga0137359_104262212	3300012923	Vadose Zone Soil	VIPEIDIWRAAQLMLKRYGDEALKESAARADESHGRRRW*
Ga0126369_111620613	3300012971	Tropical Forest Soil	VIPEIDIWRVANLMLTRYGDEALAEGAKRADELATDGDFA
Ga0126369_112759471	3300012971	Tropical Forest Soil	MIPEVDIRRVANLMLKHYGNEADIESAIRAEELSET
Ga0126369_131478182	3300012971	Tropical Forest Soil	VIPEIDIWRAAALMLKRYGEKALEQSARRADELAAD
Ga0137403_101728384	3300015264	Vadose Zone Soil	MIPEIDIWRAAQLMLKRYGDKAFEESAARADELVATGDEEN*
Ga0182033_107813841	3300016319	Soil	LIPEIDIWRAGLLMIKRHGEKALDESAARADELAL
Ga0182035_106392541	3300016341	Soil	VIPEIDIWRAATLMLKRYSDKALEQSRTRTDELAADGDHDGADIWRRITT
Ga0182032_105295001	3300016357	Soil	MIPEIDIWRVANLMLKRYGDEADIESAIRPEDPTEEGDKADEARCPHP
Ga0182032_106545071	3300016357	Soil	MIPEIDIWRVANLMLKRYGDEAQAESAIRMQELALN
Ga0182032_107114561	3300016357	Soil	MIPEVDIWRVANLMLTRYREEAMLEAAERAHELAAPGRQLG
Ga0182032_114707902	3300016357	Soil	VYRPSPDSLPCMIPEIDIWRVANLMLKRYGDEADIESALRAE
Ga0182034_115800461	3300016371	Soil	LVRVTPEIDIWRAANLMLKRHGEKALEESAARADE
Ga0182034_115895791	3300016371	Soil	VIPEIDIWRAATLMLKRYGDNALEQSVTRADELAADGDHDR
Ga0182037_113428322	3300016404	Soil	VIPEIDIWLAATLMLKRYGDKALEQSRTRIDELAS
Ga0182039_116069271	3300016422	Soil	MIPEIDIWRAAQLMLKRYGDKALEESAARADELAAAGDDDG
Ga0182039_118153212	3300016422	Soil	VIPEIDIWRAANLMLKRYGDKALDESSTRIEELTAAGDH
Ga0134112_105257403	3300017656	Grasslands Soil	VIPEIDIWRVANLMLTRYGDEAVAEGTKRAEEPAAD
Ga0187812_12213071	3300017821	Freshwater Sediment	VIPEIDICRAATLMLKRYGEKALDESAARADERAAGDDHNGARPGAGSRMP
Ga0187817_109750931	3300017955	Freshwater Sediment	VIPEIDIWRAANLMLTRYGEKALDESAARADELAAQD
Ga0210403_105652232	3300020580	Soil	VIPEIDIWRVANLMLTRYGDEATAESAKRADELAAD
Ga0210406_111866191	3300021168	Soil	VIPEIDIWRAATLMLKRYGEKALEQSATRADELAAEGDHDGAV
Ga0210400_114366671	3300021170	Soil	MIPEKDIWRAAVLMLRRYGDKALEESATRADQLDREG
Ga0210405_110826162	3300021171	Soil	VISEVDIWRAANLMLKRYGEKAFEEGSARADEPTRA
Ga0210405_111826821	3300021171	Soil	VIPEIDIWRAATLMLKRYGEKALEQSATRADELAA
Ga0210408_105540152	3300021178	Soil	DIWRAASLMLKRYGEKALEESAARADELFAEQDHDGAAVWRE
Ga0210396_101157053	3300021180	Soil	VIPEIDIWRAANLMLKRYGEKALEESSTRADELAADGDHDGA
Ga0210385_106599301	3300021402	Soil	VIPEIDIWRAALLMLKRFGDNAPKESAMRVGNLETEGD
Ga0210397_108975531	3300021403	Soil	VIPEIDIWRAANLMLKRYGEKAFEESSTRADELAA
Ga0210387_106428463	3300021405	Soil	RFHDSRVLIPEIDIWRVANLMLKRYGDEAGVESNRRADELAE
Ga0210386_105665731	3300021406	Soil	VIPEIDIWRAANLMLKRYGEKAFEESSTRADELAADGDPDGAS
Ga0210383_105501102	3300021407	Soil	VIPEIDIWRAANLMLKRYGEKALEESQARADERAAATITTA
Ga0213879_101264013	3300021439	Bulk Soil	MIPEIDIWRVANLMLTRYDEDAMLESAQHAHELAA
Ga0210392_110989222	3300021475	Soil	MIPEIDIWRAAQLMLKRYGDKALEESAARAHIPPQWR
Ga0210402_110233252	3300021478	Soil	VIPEIDIWRAATLMLKRYGEKALDESAARADELAA
Ga0210402_118435131	3300021478	Soil	MIPEKDIWRAAVLMLRRYGDKALEESATRADQLDREGDPDG
Ga0210410_111355911	3300021479	Soil	MIPEIDIWRAAQLLLKRYGEKAFEESAARADELAAGGDDDG
Ga0210410_117182042	3300021479	Soil	VQPVPVIPEIDIWRAANLMLKRYGDKALEESAARGDELA
Ga0207700_115174011	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VIPEIDIWRAANLMLKRYGEKAFEESSTRADELAADGDHDGASTWRQITR
Ga0207664_113132052	3300025929	Agricultural Soil	VIPEIDIWRAATLMLKRYGDKALEQSRTRIDELAAADNPPP
Ga0209648_101207952	3300026551	Grasslands Soil	VIPEIDIWRPANLMLMRYCENSLEKSAALADELYVAG
Ga0170819_112599761	3300031469	Forest Soil	VIPEIDIWRVANLMLKRYGDKARQESTRHAEEFWAA
Ga0318541_101284291	3300031545	Soil	VIPEIDIWLAATLMLKRYGDKALEQSRTRIDELASDGDHD
Ga0318541_103761041	3300031545	Soil	VIPEIDIWRVANLMLKRYGDEAEVESARRDDELWE
Ga0318541_107714322	3300031545	Soil	MIPEIDIWRVANLMLKHYGDEAEAESERRADELWEVG
Ga0318538_102227481	3300031546	Soil	VQLCRVKPEIDIWRAANLMLQRYGEKALEGSEARAD
Ga0318574_102563721	3300031680	Soil	VIPEIDIWRVASLMLKRYGSNAELESARRADEIWD
Ga0318560_103636342	3300031682	Soil	LIPEIDIWRAAQLMPKRYGEEALDESGARADELVVRT
Ga0310686_1021818722	3300031708	Soil	VIPEIDIWRAAALMLKRYGEQALEESAARADGLMSAGDTMGR
Ga0310686_1061857112	3300031708	Soil	VIPEIDIWRAAALMLKRYGEHVLEEGAARADDLMSAGDDDGAAT
Ga0318496_105658482	3300031713	Soil	MIPEIDIWRAAQLMLKRYGDKALEESAARADELAAA
Ga0306917_113456521	3300031719	Soil	MIPEIDIWRAAQIMLKRYGDKALEESAARGDELAA
Ga0318500_100670663	3300031724	Soil	MIPEIDIWRVANLMLKRYGDEADIESALRAEELAEE
Ga0318501_108473021	3300031736	Soil	VIPEIDIWSVAYLMLKRYGDEADIESAIRAEELAEEGDH
Ga0306918_107416551	3300031744	Soil	MIPEIDIWRAAQLMLKRYGDKALEESAARADELAA
Ga0306918_108773362	3300031744	Soil	MIPDINIWRVANLMIKRYGDEADIESALRADELWE
Ga0306918_109457921	3300031744	Soil	MIPEIDIRRVATLMLKHYGNKAEAESARRADELWE
Ga0306918_113597321	3300031744	Soil	VIPEIDIWRVANLMLKCYGSEADIESAIRAEELADAGDWA
Ga0318537_100335255	3300031763	Soil	MIPEIDIWRVANLMLKRYGDEAQAESAIRMQELVLN
Ga0318521_106198671	3300031770	Soil	VIPEIDIWRAAQLVLKRYGEKALEESAARADELVLA
Ga0318546_108502853	3300031771	Soil	VIPEIDIWCVANLMLTRYGEEAMLESAQRAHELAEDGDRVGAATW
Ga0318543_102547771	3300031777	Soil	VIPEIDIWLAATLMLKRYGDKALEQSRTRIDELASDGDHDGA
Ga0318543_105238491	3300031777	Soil	VIPEIDIWRAASLMLKRYGDKALEESAARADELAGQ
Ga0318543_105787041	3300031777	Soil	LIPEIDVWRAAQLMLKRYGERALEESAARGDELAS
Ga0318498_101195451	3300031778	Soil	MIPEIDIWRAASLMLKRYGEKALEESAARADELFAEQ
Ga0318557_106095381	3300031795	Soil	ARVQLCRVKPEIDIWRAANLMLQRYGEKALEGSEARAD
Ga0318576_106186231	3300031796	Soil	VIPEIDIWRVAYLMLKRYDDEADIESAIRAEELAEAGYRSG
Ga0318497_102874291	3300031805	Soil	MIPEIDIWRVANLMLKRYGDQAEVESAIRTQEQLGSS
Ga0318568_101793232	3300031819	Soil	LPGVIPEIDIWRVANLMLKRYGDEADIESAIRAEELC
Ga0318567_106080321	3300031821	Soil	MIPEIDIWRVAKLMLKRYGDQAQAESAIRMQELALNGD
Ga0318499_103864643	3300031832	Soil	MIPEIDIWRVANLMLKRYGDEADIESALRAEELAEES
Ga0306919_103139202	3300031879	Soil	VIPEIDIWRAATLMLKRYRDKALEQSRTRTDELAADGDHDGADIW
Ga0306919_103423421	3300031879	Soil	MIPEIDIWRVAYLMLKRYDDLAEVESARRADELWEDGDAAG
Ga0306919_106886201	3300031879	Soil	MIPEIDIWRVANLMLKRYGDLAEVESARRADELWEDGMPRA
Ga0318536_104645541	3300031893	Soil	VIPEIDIRRAAQLMLKRYGEQALEESAARADELALA
Ga0318536_105241251	3300031893	Soil	MIPEIDIWRVAKLMLKRYGDEAEAESTIRMQELALN
Ga0318536_106542821	3300031893	Soil	MIPEIDIWRVANLMLKRYGDQAEVESAVRTQELALNGD
Ga0306921_101928924	3300031912	Soil	LIPEIDIWRAAQLMLKRYGDSALEESAARANELAL
Ga0310912_113130682	3300031941	Soil	MIPEIDIWRVANLMLKRYGDEADIESAIRPEDPTEEGDK
Ga0310916_102683604	3300031942	Soil	MIPEIDIWRVANLMLKCYGGEADIESAIRAEEFADV
Ga0310916_103221553	3300031942	Soil	VIPEIDIWRVANLMLTRSGEEAMLESAQHAHELAADGDRS
Ga0310913_110955341	3300031945	Soil	MIPEIDIWRVADLMLKRYGDEADIESAIRAEELADAG
Ga0310910_108298273	3300031946	Soil	MIPEIDIWRVANLMLKRCDNEAVAESVKRADELAASGEDA
Ga0310909_109320081	3300031947	Soil	VIPEIDIWRVANLVLKRYGDEADIESAIRAEELAEEGDHNGAAVSR
Ga0310909_111593891	3300031947	Soil	VIPEIDIWLAATLMLKRYGDKALEQSRTRIDELASDGDH
Ga0318530_104010391	3300031959	Soil	MIPEIDIWRVANLMLKRYGDEADIESAIRPEDPTEEGDKADE
Ga0318531_100272661	3300031981	Soil	MIPEIDIWRVANLMLKRYGERAEEESAIRTQEFALNGDSA
Ga0318531_104402392	3300031981	Soil	MIPEIDIWRVANLMLRRYGDEADIESAIRAEELAEA
Ga0318507_100497201	3300032025	Soil	VIPNIDIWRVANLMLTRYGEEAMLEAAERAHELAED
Ga0310911_109260801	3300032035	Soil	VIPELDIWRVANLMLTRYGEEAMLEGAKHAHELAADGDRAG
Ga0318504_105700143	3300032063	Soil	LIPDIDIWRAAQLMLKLYGDNALEQSAARANELAL
Ga0318553_105286551	3300032068	Soil	VTPEIDIWRAANLMLKRYGEKALEESAARADEPAAQDDYNG
Ga0306924_117613471	3300032076	Soil	PVMIPEIDIWHVANLMLKRYGDEAEAESARRADEL
Ga0318518_106560041	3300032090	Soil	VHLSSRDTEVDIWRAANLMLKSYSEKELEESAARVDELAADGDHDGAVTWRRITMP
Ga0318577_106002041	3300032091	Soil	VIPEIDIWRVANLMLKRYGDEADIEGAIRAEELAEAG
Ga0318540_103944401	3300032094	Soil	VIPEIDIWRVANLMLKRYGDEADIESAIRAEELAEEG
Ga0318540_105103522	3300032094	Soil	VIPEIDIWRVANLMLKRYGSEADIESAIRAEELAE
Ga0306920_1005922291	3300032261	Soil	VIPEIDIWRVAYLMLKRYGDEADIESAIRAEELAEEGD
Ga0306920_1031344872	3300032261	Soil	MIRETDIWRVAHLMLKRYGDEAEAESAIRMQELALNGDS
Ga0310914_102286305	3300033289	Soil	MIPEIDIWRVANLMLKRYGDEADIESAIRPEDPTEEG
Ga0310914_102983022	3300033289	Soil	MIPEIDIWRVAKLMLKRYGDQAQAESAIRMQELAL
Ga0310914_113656111	3300033289	Soil	MIPEIDIWRVAHLMLKRYGDLAEVESARRADELWK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072576

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences