Metagenome / Metatranscriptome Family F072560

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072560
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	42 residues
Representative Sequence	MNTAGFIFAAILSAVIMFGTVMAAANAGMTQVATSSITTTL
Number of Associated Samples	84
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.28 %
% of genes near scaffold ends (potentially truncated)	16.53 %
% of genes from short scaffolds (< 2000 bps)	77.69 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (89.256 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.140 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.554 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00296	Bac_luciferase	22.31
PF00487	FA_desaturase	17.36
PF09286	Pro-kuma_activ	6.61
PF00202	Aminotran_3	4.13
PF01741	MscL	4.13
PF02417	Chromate_transp	3.31
PF00248	Aldo_ket_red	1.65
PF00106	adh_short	0.83
PF12697	Abhydrolase_6	0.83
PF02781	G6PD_C	0.83
PF02616	SMC_ScpA	0.83
PF02954	HTH_8	0.83
PF01323	DSBA	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	22.31
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	17.36
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	17.36
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	6.61
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	4.13
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	3.31
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.83
COG1354	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.26 %
Unclassified	root	N/A	10.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.26 %
Unclassified	root	N/A	10.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.26 %
Unclassified	root	N/A	10.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.45 %
Unclassified	root	N/A	10.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	20.66 %
Unclassified	root	N/A	10.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	20.66 %
Unclassified	root	N/A	10.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.75 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	20.66 %
Unclassified	root	N/A	10.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.75 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	20.66 %
Unclassified	root	N/A	10.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10171392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1465	Open in IMG/M
3300002245\|JGIcombinedJ26739_100686051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300004080\|Ga0062385_10015216	All Organisms → cellular organisms → Bacteria	2753	Open in IMG/M
3300004080\|Ga0062385_10639928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300004091\|Ga0062387_100244323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300004091\|Ga0062387_100538281	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300004091\|Ga0062387_100581764	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300004092\|Ga0062389_102705329	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	661	Open in IMG/M
3300004092\|Ga0062389_104404656	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300004152\|Ga0062386_100085969	All Organisms → cellular organisms → Bacteria	2404	Open in IMG/M
3300005534\|Ga0070735_10350382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300005538\|Ga0070731_10007282	All Organisms → cellular organisms → Bacteria → Proteobacteria	8639	Open in IMG/M
3300005538\|Ga0070731_10403387	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005538\|Ga0070731_10447343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300005602\|Ga0070762_10002298	All Organisms → cellular organisms → Bacteria	8989	Open in IMG/M
3300005602\|Ga0070762_10287827	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1032	Open in IMG/M
3300005610\|Ga0070763_10185571	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1103	Open in IMG/M
3300005712\|Ga0070764_10373275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	838	Open in IMG/M
3300005921\|Ga0070766_10024988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3203	Open in IMG/M
3300005921\|Ga0070766_10411575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300005921\|Ga0070766_11013939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300006176\|Ga0070765_100142454	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300009518\|Ga0116128_1000027	All Organisms → cellular organisms → Bacteria	134287	Open in IMG/M
3300009521\|Ga0116222_1175859	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300009525\|Ga0116220_10071813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1453	Open in IMG/M
3300009645\|Ga0116106_1003179	All Organisms → cellular organisms → Bacteria	7211	Open in IMG/M
3300009645\|Ga0116106_1169639	Not Available	696	Open in IMG/M
3300010048\|Ga0126373_10218167	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300010048\|Ga0126373_10254883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1729	Open in IMG/M
3300010339\|Ga0074046_10522861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	707	Open in IMG/M
3300010341\|Ga0074045_10022187	All Organisms → cellular organisms → Bacteria	4948	Open in IMG/M
3300010341\|Ga0074045_10061378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2685	Open in IMG/M
3300010343\|Ga0074044_10560279	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300010379\|Ga0136449_101012011	Not Available	1336	Open in IMG/M
3300010379\|Ga0136449_103481173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300011120\|Ga0150983_11585688	Not Available	851	Open in IMG/M
3300011120\|Ga0150983_12841395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1354	Open in IMG/M
3300011120\|Ga0150983_15365689	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1248	Open in IMG/M
3300011120\|Ga0150983_16293109	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628	Open in IMG/M
3300011120\|Ga0150983_16550212	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	774	Open in IMG/M
3300012202\|Ga0137363_10874779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300012924\|Ga0137413_10596402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300014151\|Ga0181539_1000003	All Organisms → cellular organisms → Bacteria	210784	Open in IMG/M
3300014155\|Ga0181524_10079507	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300014159\|Ga0181530_10037998	All Organisms → cellular organisms → Bacteria	3302	Open in IMG/M
3300014164\|Ga0181532_10005679	All Organisms → cellular organisms → Bacteria	10535	Open in IMG/M
3300014501\|Ga0182024_10714261	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300016750\|Ga0181505_10009198	Not Available	772	Open in IMG/M
3300017823\|Ga0187818_10043416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1931	Open in IMG/M
3300017925\|Ga0187856_1006585	All Organisms → cellular organisms → Bacteria	7270	Open in IMG/M
3300017932\|Ga0187814_10264247	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300017946\|Ga0187879_10001259	All Organisms → cellular organisms → Bacteria	17352	Open in IMG/M
3300017946\|Ga0187879_10010552	All Organisms → cellular organisms → Bacteria	5914	Open in IMG/M
3300017955\|Ga0187817_10014112	All Organisms → cellular organisms → Bacteria	4650	Open in IMG/M
3300018047\|Ga0187859_10253243	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300019190\|Ga0184600_126386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	614	Open in IMG/M
3300020579\|Ga0210407_11123929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300020581\|Ga0210399_11532068	Not Available	516	Open in IMG/M
3300020582\|Ga0210395_10078258	All Organisms → cellular organisms → Bacteria	2436	Open in IMG/M
3300020583\|Ga0210401_10487269	Not Available	1096	Open in IMG/M
3300021170\|Ga0210400_10614746	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	896	Open in IMG/M
3300021180\|Ga0210396_10743622	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300021181\|Ga0210388_10272295	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300021181\|Ga0210388_10292926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1429	Open in IMG/M
3300021181\|Ga0210388_10455781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1123	Open in IMG/M
3300021181\|Ga0210388_10581308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300021403\|Ga0210397_10106423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1903	Open in IMG/M
3300021405\|Ga0210387_10534390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M
3300021405\|Ga0210387_11716208	Not Available	531	Open in IMG/M
3300021420\|Ga0210394_10445560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1139	Open in IMG/M
3300021420\|Ga0210394_10559800	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1005	Open in IMG/M
3300021432\|Ga0210384_11486318	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	583	Open in IMG/M
3300021477\|Ga0210398_11560929	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300021478\|Ga0210402_11879273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300021479\|Ga0210410_10278002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1503	Open in IMG/M
3300021479\|Ga0210410_11393115	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300021559\|Ga0210409_10746419	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	851	Open in IMG/M
3300021560\|Ga0126371_10003753	All Organisms → cellular organisms → Bacteria	13336	Open in IMG/M
3300022533\|Ga0242662_10052302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300022711\|Ga0242674_1007242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1091	Open in IMG/M
3300025507\|Ga0208188_1068958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300027698\|Ga0209446_1024821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1496	Open in IMG/M
3300027729\|Ga0209248_10024888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1869	Open in IMG/M
3300027767\|Ga0209655_10230724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300027795\|Ga0209139_10252297	Not Available	623	Open in IMG/M
3300027824\|Ga0209040_10029459	All Organisms → cellular organisms → Bacteria	3488	Open in IMG/M
3300027829\|Ga0209773_10406224	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300027829\|Ga0209773_10471120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300027853\|Ga0209274_10160615	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1135	Open in IMG/M
3300027884\|Ga0209275_10201128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300027884\|Ga0209275_10336310	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	844	Open in IMG/M
3300027884\|Ga0209275_10499505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300027889\|Ga0209380_10102057	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300027889\|Ga0209380_10673409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300027908\|Ga0209006_10301783	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300028906\|Ga0308309_10057788	All Organisms → cellular organisms → Bacteria	2831	Open in IMG/M
3300029636\|Ga0222749_10288406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300030577\|Ga0210260_10220865	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300030730\|Ga0307482_1139550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300030741\|Ga0265459_10006545	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300030741\|Ga0265459_12461835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300030743\|Ga0265461_13847771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300031057\|Ga0170834_109909839	Not Available	533	Open in IMG/M
3300031057\|Ga0170834_113744612	Not Available	558	Open in IMG/M
3300031708\|Ga0310686_102316962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300031708\|Ga0310686_109528785	Not Available	1457	Open in IMG/M
3300031708\|Ga0310686_111770746	All Organisms → cellular organisms → Bacteria	5320	Open in IMG/M
3300031708\|Ga0310686_114869158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1948	Open in IMG/M
3300031715\|Ga0307476_11366526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300031718\|Ga0307474_11081831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300031753\|Ga0307477_10446539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	883	Open in IMG/M
3300031753\|Ga0307477_10755237	Not Available	648	Open in IMG/M
3300031823\|Ga0307478_10197206	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300031962\|Ga0307479_11773251	Not Available	570	Open in IMG/M
3300032028\|Ga0316052_113373	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	542	Open in IMG/M
3300032160\|Ga0311301_10000545	All Organisms → cellular organisms → Bacteria	141627	Open in IMG/M
3300032160\|Ga0311301_10012809	All Organisms → cellular organisms → Bacteria	25921	Open in IMG/M
3300032160\|Ga0311301_10784576	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300032515\|Ga0348332_10065305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300032515\|Ga0348332_12291101	All Organisms → cellular organisms → Bacteria → Proteobacteria	2124	Open in IMG/M
3300033887\|Ga0334790_000393	All Organisms → cellular organisms → Bacteria	42537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.38%
Aquatic	Environmental → Aquatic	25.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.90%
Freshwater	Environmental → Aquatic → Freshwater	25.62%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.65%
Peat	Environmental → Terrestrial → Peat	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.62%
Loam	Environmental → Terrestrial → Soil → Loam	19.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.13%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	19.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.01%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.48%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.14%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	12.40%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.31%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.31%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.65%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030577	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032028	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_101713922	3300001593	Forest Soil	MKTAGFIFAAVLCAAIMFGTVMAAANAGMMTRVASSSATTTL*
JGIcombinedJ26739_1006860512	3300002245	Forest Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMTRVTTSSHATTR*
Ga0062385_100152164	3300004080	Bog Forest Soil	MKTAGFIFAAALSAVIMFGTVLAAANAGMTQIAATSVAPTR*
Ga0062385_106399282	3300004080	Bog Forest Soil	MYMKTAGFIFAAVLCAAIMFGTVMAAANAGMMTRVASSSATTTL*
Ga0062387_1002443232	3300004091	Bog Forest Soil	MKTAGFIFAAILSAAIMFGTVMAAANAGMTQVASSSATTTL*
Ga0062387_1005382812	3300004091	Bog Forest Soil	MKTAGFIFAALLCAAIMFGTVMAVANAGMTQVATLSAVTTL*
Ga0062387_1005817642	3300004091	Bog Forest Soil	MYMKTAGFVFAAVLCAAIMFGTVMAAANAGMMTRVASSSAATTL*
Ga0062389_1027053292	3300004092	Bog Forest Soil	MNTAGFVFAAILSGLIMLGTVMAVANAGMTQVASSSIAQTL*
Ga0062389_1044046561	3300004092	Bog Forest Soil	MKTTGFIFAAFLTALVMFGTVMAVANAGMTQIASSSTSASL*
Ga0062386_1000859693	3300004152	Bog Forest Soil	MKTAGFFFAAILSAIIMFGTVMAVANAGMPQVAPSSRAATL*
Ga0070735_103503822	3300005534	Surface Soil	MKTAVFFFAAILSAVIMFGTVRAVANAGMNEIAPQSHAVAL*
Ga0070731_100072822	3300005538	Surface Soil	MKTAGFVFAAILSAAIMLGTVVAAANAGMPRVATSSSETIR*
Ga0070731_104033873	3300005538	Surface Soil	MKTTGFVLAAMLTAVIMFGTLVAESNAGMSGAVSTPAARAY*
Ga0070731_104473432	3300005538	Surface Soil	MKTAGFFFAAILSAVIMFGTVRAVANAGMNEVAPVSHAVTL*
Ga0070762_1000229811	3300005602	Soil	MNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL*
Ga0070762_102878272	3300005602	Soil	VRIPYQRMHMKTAGFFFAAILSAVIMFGTVRAVADAGMTRVASQTHAATL*
Ga0070763_101855713	3300005610	Soil	MRILIRGMHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASRVTTL*
Ga0070764_103732752	3300005712	Soil	MYMNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL*
Ga0070766_100249882	3300005921	Soil	MNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTP*
Ga0070766_104115751	3300005921	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASHVTTL*
Ga0070766_110139391	3300005921	Soil	VRIPYQRMHMKTAGFFFAAILSAVIMFGTVRAVADAGMTRVAPVSHVTTL*
Ga0070765_1001424544	3300006176	Soil	MKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASRVTTL*
Ga0116128_100002764	3300009518	Peatland	MKTAGFIFAAILCAVIMLGTVMAAANAGMTQIASSSIVTIL*
Ga0116222_11758592	3300009521	Peatlands Soil	MYMKTAGFIFAAILSAVIMFGTVMAVANAGMTEIASSSATATL*
Ga0116220_100718132	3300009525	Peatlands Soil	MYMKTAGFIFAAILSAVIMFGTIVAVANAGMTEIASSSATATL*
Ga0116106_10031797	3300009645	Peatland	MKTAGFIFTAILCAVIMLGTVMAAVNAGITQVASSSVVTTL*
Ga0116106_11696392	3300009645	Peatland	MHMKTAGFIFAAILSAVIMLGTVMAAANAGMAQTASSSIVKTL*
Ga0126373_102181671	3300010048	Tropical Forest Soil	MHMNTAGFIFAAILCAAIMFGTVVAAANAGMTPVVTSSSSTTR*
Ga0126373_102548833	3300010048	Tropical Forest Soil	MHMNTAGFIFAAILCAAIMFGTVVAAANAGMTQVVTSSSSTTR*
Ga0074046_105228612	3300010339	Bog Forest Soil	MYMNTAGFIFAAILSAVIMFGTVMAVANAGMTQIATSSITTTL*
Ga0074045_100221875	3300010341	Bog Forest Soil	MYMNTAGFIFAAILSVVIMFGTVMAVANAGMTQIATSSITTTL*
Ga0074045_100613783	3300010341	Bog Forest Soil	MKTAGFIFAAILSAVIMFGTVMAAANAGMTQIASSSTVTTL*
Ga0074044_105602791	3300010343	Bog Forest Soil	TAGFIFAALLCAAIMFGTVMAVANAGMTQVATLSAVTTL*
Ga0136449_1010120112	3300010379	Peatlands Soil	MNMKTAGFIFAAILCAAVMLGTVMAAANAGMAQIASSSVVTTL*
Ga0136449_1034811732	3300010379	Peatlands Soil	MHMKTAGFVFAAILSAVIMFGTVMAAANAGMAAGASSSVVTTR*
Ga0150983_115856881	3300011120	Forest Soil	MKTTGFVLAAMLTAVIMFGTLVAESNAGMSGAVSSSAAKAH*
Ga0150983_128413952	3300011120	Forest Soil	MYMNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTP*
Ga0150983_153656892	3300011120	Forest Soil	MYMNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTIL*
Ga0150983_162931091	3300011120	Forest Soil	MHMKTAGFVFAAILSVAIMFGTVMAVANAGMTHVVPASVVTTL*
Ga0150983_165502122	3300011120	Forest Soil	MRIPERGMHMNTAGFVFAAILSAAIMFGTVIAAANAGMTHVATSSVVTNL*
Ga0137363_108747792	3300012202	Vadose Zone Soil	MHMKTAGFVFAAILSAAIMFGTVVAAANAGMSRVAPASVVTIL*
Ga0137413_105964021	3300012924	Vadose Zone Soil	MHMKTTGFVFAAILSAVIMFGTVMAVANAGMPQSVSSSHA
Ga0181539_100000311	3300014151	Bog	MKTAGFIFASILCAVIMLGTVMAAANAGMNQIPPSSVVTTL*
Ga0181524_100795073	3300014155	Bog	VFLVRGMHMKTAGFIFAAILCAVIMLGTVMAAANAGMTQIASSSIVTIL*
Ga0181530_100379981	3300014159	Bog	MKTAGFIFTAILCAAVMLGTVMAAANAGMSQVASSSVVTTL*
Ga0181532_100056796	3300014164	Bog	MKTAGFIFTAILCAAVMLGTVMAAANAGITQVASSSVVTTL*
Ga0182024_107142612	3300014501	Permafrost	MHMKTAGFFFAAILSAVIMFGTVMAVANAGMTQVTTSHSVSL*
Ga0181505_100091981	3300016750	Peatland	TAGFIFTAILCAAVMLGTVMAAANAGITQVASSSVVTTL
Ga0187818_100434162	3300017823	Freshwater Sediment	MYMKTAGFIFAAILSAVIMFGTVMAVANAGMTEIASSSATATL
Ga0187856_10065853	3300017925	Peatland	MKTAGFIFAAILCAVIMLGTVMAAANAGMTQIASSSIVTIL
Ga0187814_102642472	3300017932	Freshwater Sediment	MYMKTDGFIFAAILSAVIMFGTVMAVANAGMTEIASSSATATL
Ga0187879_100012599	3300017946	Peatland	MKTAGFIFAAILSAVIMLGTVMAAANAGMAQTASSSIVKTL
Ga0187879_100105524	3300017946	Peatland	MKTAGFIFTAILCAVIMLGTVMAAVNAGITQVASSSVVTTL
Ga0187817_100141122	3300017955	Freshwater Sediment	MYVKTAGFIFAAILSAVIMFGTVMAVANAGMTEIASSSATATL
Ga0187859_102532432	3300018047	Peatland	MHMKTAGFIFAAILSAVIMLGTVMAAANAGMAQTASSSIVKTL
Ga0184600_1263861	3300019190	Soil	AGFIFAAILSAVIMFGTVMAVANAGMTQVATSSITTTL
Ga0210407_111239292	3300020579	Soil	MHMKTAGFFFAAILSAVIMFGTVMAAANAGMTTQVAAPHAVRL
Ga0210399_115320682	3300020581	Soil	MNTAGFIFAAVLSAFIMLGTVMAAANAGMTHVVASSAIVTR
Ga0210395_100782582	3300020582	Soil	MNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0210401_104872692	3300020583	Soil	MKTAGFVFAAILSAFIMLGTVMAAGNAGMTSVATSSTVKSR
Ga0210400_106147461	3300021170	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHVTTSSQASTL
Ga0210396_107436222	3300021180	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHVTTSSHASTL
Ga0210388_102722952	3300021181	Soil	MNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTP
Ga0210388_102929262	3300021181	Soil	MNTAGFIFAAILSAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0210388_104557812	3300021181	Soil	MYMNTAGFIFAAIISGVIMFGTVMAAANAGMTQVATSSITTTL
Ga0210388_105813082	3300021181	Soil	MYMNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0210397_101064232	3300021403	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGIPHVATASRATTL
Ga0210387_105343902	3300021405	Soil	MNTAGFIFAAIISGVIMFGTVMAAANAGMTQVATSSITTTL
Ga0210387_117162082	3300021405	Soil	MKTAGFVFAAILSAAIMFGTVVAVANAGMSRVAPVSVVTTL
Ga0210394_104455602	3300021420	Soil	MHMNTAGFVFAVILSAAIMFGTVIAAANAGMTHVATSLS
Ga0210394_105598001	3300021420	Soil	MNTAGFIFAAILSAVIMFGTVMAVANAGMTQVATSSITTTL
Ga0210384_114863182	3300021432	Soil	VFLIRGMHMKTAGFVFAAILSAMIMFGTVVAAANAGIPHVATASRATTL
Ga0210398_115609292	3300021477	Soil	MYMNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTP
Ga0210402_118792731	3300021478	Soil	AVPSCVFLVRGMHMNTAGFVFAAILSAIIMFGTVVAAANAGMGHVTTTSSAATL
Ga0210410_102780022	3300021479	Soil	MKTAGFFFAAILSAVIMFGTVMAVANAGMNEVAPQSHAVTL
Ga0210410_113931152	3300021479	Soil	VRIPFYRGTHMNTAGFIFAAVLSAVIMLGTVMAAANAGMTHVAASSSVARL
Ga0210409_107464192	3300021559	Soil	MHMKTAGFFFAAILSAVIMFGTVMAVANAGMNEVAPISHAVTL
Ga0126371_1000375313	3300021560	Tropical Forest Soil	MNTAGFIFAAILCAAIMFGTVVAAANAGMTPVVTSSSSTTR
Ga0242662_100523023	3300022533	Soil	MKTAGFVFAAILSVAIMFGTIMAVANAGMTHVVPASVVTAL
Ga0242674_10072422	3300022711	Soil	NTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0208188_10689582	3300025507	Peatland	MKTAGFIFTAILCAVIMLGTVMAAVNAGITQVASSSV
Ga0209446_10248212	3300027698	Bog Forest Soil	MNTAGFIFAAILSAVIMFGTVMAVANAGMTQIATSSITTTL
Ga0209248_100248883	3300027729	Bog Forest Soil	MKTAGFIFAALLCAAIMFGTVMAVANAGMTQVATSSAVTTL
Ga0209655_102307241	3300027767	Bog Forest Soil	MYMNTAGFIFAAILSAVIMFGTVMAVANAGMTQIATSSITTTL
Ga0209139_102522972	3300027795	Bog Forest Soil	MKTAGFIFAAILSAAIMFGTVMAAANAGMTQVASSSATTTL
Ga0209040_100294592	3300027824	Bog Forest Soil	MNTAGFIFAAILSAVIMFGTVMAAANAGMTQVARSSITTTL
Ga0209773_104062241	3300027829	Bog Forest Soil	TAGFIFAALLCAAIMFGTVMAVANAGMTQVATLSAVTTL
Ga0209773_104711202	3300027829	Bog Forest Soil	MHMNTAGFIVAAILSAVIMFGTVMAVANAGMTQVATSSITTTL
Ga0209274_101606152	3300027853	Soil	TAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0209275_102011281	3300027884	Soil	MNTAGFIFAAIISAVIMFGTVMAAANAGMTQVATSSI
Ga0209275_103363102	3300027884	Soil	MHMKTAGFFFAAILSAVIMFGTVRAVADAGMTRVASQTHAATL
Ga0209275_104995052	3300027884	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMSHLAPASRVTTL
Ga0209380_101020572	3300027889	Soil	MKTAGFFFAAILSAVIMFGTVRAVADAGMTRVASQTHAATL
Ga0209380_106734091	3300027889	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASHVTTL
Ga0209006_103017832	3300027908	Forest Soil	MHMKTAGFFFAAILSAAIMFGTVMAVANAGMTQVTTSHSVSL
Ga0308309_100577882	3300028906	Soil	MKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASRVTTL
Ga0222749_102884062	3300029636	Soil	MKTAGFFFAAILSAVIMFGTVMAVANAGMNEVAPVS
Ga0210260_102208652	3300030577	Soil	FIFAAILSAVIMLGTVVAVANSGMTAGAMPSHVVATS
Ga0307482_11395501	3300030730	Hardwood Forest Soil	MKTAGFFFAAILSAVIMFGTVMAAANAGMTSQVAAPHAVEL
Ga0265459_100065455	3300030741	Soil	GKYMNTAGFIFAAILSAVIMFGTVMAVANAGMTQVATSSITTTL
Ga0265459_124618352	3300030741	Soil	MYMNTAGFIFAAILSAVIMFGTVMAVANAGMTQVATSSITTTL
Ga0265461_138477712	3300030743	Soil	AGFIFAAILSAVIMFGTVMAAANAGMTQVATSSITTTL
Ga0170834_1099098391	3300031057	Forest Soil	MHMNTAGFFFAAILSAVIMFGTVRAVADAGMTRIAPQSHVTTL
Ga0170834_1137446122	3300031057	Forest Soil	MKTAGFVFAAILSAVIMFGTVMAATNAGMTRVAPVAHATTR
Ga0310686_1023169621	3300031708	Soil	MHMKTAGFVFAAILSAMIMFGTVVAAANAGMPHLAPASRVTTL
Ga0310686_1095287852	3300031708	Soil	MHMKTAGFVFAAILSAFIMLGTVMAAGNAGMTQVATSSTLKSR
Ga0310686_1117707465	3300031708	Soil	MNTAGFIFAAILSAVIMLGTVMAAANAGMTQVASSSSATTL
Ga0310686_1148691582	3300031708	Soil	MHMKTAGFFFAAILSAVIMFGTVRAVADAGMTRVAPVSHVTTL
Ga0307476_113665261	3300031715	Hardwood Forest Soil	AGFVFAAILSAMIMFGTVVAAANAGMPHVTTSSHASTL
Ga0307474_110818312	3300031718	Hardwood Forest Soil	MHMKTAGFFFAAILSAVIMFGTVMAAANAGMTSQVAAPHAVEL
Ga0307477_104465391	3300031753	Hardwood Forest Soil	MQMKTAGFFFAAILSAVIMFGTVRAVADAGMTRIAPQSHAVTL
Ga0307477_107552372	3300031753	Hardwood Forest Soil	MQMKTAGFIFAAILSAVIMFGTVMAAANAGMTRVAPVSRVPTL
Ga0307478_101972062	3300031823	Hardwood Forest Soil	MHMKTAGFFFAAILSAVIMFSTVMAAANAGMTTQVAAPHVVEL
Ga0307479_117732512	3300031962	Hardwood Forest Soil	MHMKTAGFFFAAILSAAIMFSTVMAVANAGMTRIAPVSHAVTL
Ga0316052_1133731	3300032028	Soil	AGFIFAAIISAVIMFGTVMAAANAGMTQVATSSITTTP
Ga0311301_10000545140	3300032160	Peatlands Soil	MKTAGFIFAAILSAVIMFGTVMAVANAGMTEIASSSATATL
Ga0311301_1001280918	3300032160	Peatlands Soil	MRTAGFIFAAILTGLIMFGTVMAAANAGMTRVASSSASTTL
Ga0311301_107845762	3300032160	Peatlands Soil	MNMKTAGFIFAAILCAAVMLGTVMAAANAGMTQIASSSVVTTL
Ga0348332_100653051	3300032515	Plant Litter	MNTAGFVFAAILSAVIMFGTVIAAANAGMGRVTPSVVTTL
Ga0348332_122911012	3300032515	Plant Litter	MKTAGFIFAAILSAVIMLGTVVAVANSGMTANTTPSHVVATS
Ga0334790_000393_10410_10541	3300033887	Soil	MHMKTAGFIFTAILCAAVMLGTVMAAANAGMTQIASSSVVTTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072560

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences