Metagenome / Metatranscriptome Family F072547

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072547
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	56 residues
Representative Sequence	MSSFHRVDQRRARPGLPTEIESRLPIGQSVVVIAGLSVLSWAVLISIVVALRAVL
Number of Associated Samples	78
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.17 %
% of genes near scaffold ends (potentially truncated)	23.97 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.066 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.058 % of family members)
Environment Ontology (ENVO)	Unclassified (33.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.719 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.55% β-sheet: 0.00% Coil/Unstructured: 61.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02397	Bac_transf	29.75
PF13358	DDE_3	3.31
PF13467	RHH_4	2.48
PF00239	Resolvase	2.48
PF07452	CHRD	1.65
PF13683	rve_3	0.83
PF01471	PG_binding_1	0.83
PF12762	DDE_Tnp_IS1595	0.83
PF01464	SLT	0.83
PF00872	Transposase_mut	0.83
PF13751	DDE_Tnp_1_6	0.83
PF02452	PemK_toxin	0.83
PF00012	HSP70	0.83
PF12802	MarR_2	0.83
PF12770	CHAT	0.83
PF05951	Peptidase_M15_2	0.83
PF03328	HpcH_HpaI	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	29.75
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.48
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	2.48
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.83
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.83
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.83
COG3108	Uncharacterized conserved protein YcbK, DUF882 family	Function unknown [S]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
All Organisms	root	All Organisms	47.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
cellular organisms	root	All Organisms → cellular organisms	47.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100474051	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101577368	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300000955\|JGI1027J12803_104672020	Not Available	659	Open in IMG/M
3300001593\|JGI12635J15846_10106746	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300001661\|JGI12053J15887_10020252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3722	Open in IMG/M
3300002245\|JGIcombinedJ26739_100285813	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300002245\|JGIcombinedJ26739_100507333	All Organisms → cellular organisms → Bacteria → Proteobacteria	1083	Open in IMG/M
3300002245\|JGIcombinedJ26739_101162521	Not Available	660	Open in IMG/M
3300005181\|Ga0066678_11101681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300005436\|Ga0070713_100594523	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300005445\|Ga0070708_100460549	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300005445\|Ga0070708_100779895	Not Available	899	Open in IMG/M
3300005467\|Ga0070706_100104515	All Organisms → cellular organisms → Bacteria	2634	Open in IMG/M
3300005467\|Ga0070706_100318188	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005467\|Ga0070706_100619272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300005467\|Ga0070706_102087785	Not Available	512	Open in IMG/M
3300005471\|Ga0070698_101149959	Not Available	725	Open in IMG/M
3300005518\|Ga0070699_100916537	Not Available	803	Open in IMG/M
3300005536\|Ga0070697_100543720	Not Available	1018	Open in IMG/M
3300005536\|Ga0070697_100647813	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300005536\|Ga0070697_101923286	Not Available	529	Open in IMG/M
3300005576\|Ga0066708_10327065	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300005764\|Ga0066903_100792307	Not Available	1693	Open in IMG/M
3300006028\|Ga0070717_10724625	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300006028\|Ga0070717_11034676	Not Available	748	Open in IMG/M
3300006028\|Ga0070717_11119758	Not Available	717	Open in IMG/M
3300006046\|Ga0066652_101358983	Not Available	667	Open in IMG/M
3300006176\|Ga0070765_100823704	Not Available	877	Open in IMG/M
3300006176\|Ga0070765_102161965	Not Available	519	Open in IMG/M
3300006791\|Ga0066653_10416606	Not Available	687	Open in IMG/M
3300006796\|Ga0066665_10336301	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300006804\|Ga0079221_11235339	Not Available	583	Open in IMG/M
3300006854\|Ga0075425_100936052	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300006871\|Ga0075434_101481456	Not Available	688	Open in IMG/M
3300006904\|Ga0075424_102025481	Not Available	607	Open in IMG/M
3300007788\|Ga0099795_10035334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1747	Open in IMG/M
3300007788\|Ga0099795_10094493	Not Available	1164	Open in IMG/M
3300007788\|Ga0099795_10258019	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300007788\|Ga0099795_10621875	Not Available	515	Open in IMG/M
3300009089\|Ga0099828_10633872	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300009143\|Ga0099792_10022650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2819	Open in IMG/M
3300009143\|Ga0099792_10079320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1676	Open in IMG/M
3300009143\|Ga0099792_10528250	Not Available	743	Open in IMG/M
3300011120\|Ga0150983_11758582	Not Available	534	Open in IMG/M
3300012200\|Ga0137382_10036297	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300012202\|Ga0137363_10996047	Not Available	712	Open in IMG/M
3300012203\|Ga0137399_10137277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1940	Open in IMG/M
3300012203\|Ga0137399_10301600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1323	Open in IMG/M
3300012203\|Ga0137399_10685999	Not Available	862	Open in IMG/M
3300012208\|Ga0137376_10293908	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300012208\|Ga0137376_10761039	Not Available	834	Open in IMG/M
3300012359\|Ga0137385_10381413	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300012361\|Ga0137360_11582888	Not Available	560	Open in IMG/M
3300012362\|Ga0137361_10575140	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300012469\|Ga0150984_113380484	Not Available	512	Open in IMG/M
3300012582\|Ga0137358_10021944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4121	Open in IMG/M
3300012582\|Ga0137358_10359105	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300012582\|Ga0137358_10580876	Not Available	752	Open in IMG/M
3300012582\|Ga0137358_10799986	Not Available	626	Open in IMG/M
3300012683\|Ga0137398_10003909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6724	Open in IMG/M
3300012683\|Ga0137398_10220494	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300012917\|Ga0137395_10455498	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300012917\|Ga0137395_10577922	Not Available	811	Open in IMG/M
3300012923\|Ga0137359_10081659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2838	Open in IMG/M
3300012923\|Ga0137359_10499734	Not Available	1073	Open in IMG/M
3300012924\|Ga0137413_10507225	Not Available	888	Open in IMG/M
3300012924\|Ga0137413_10665815	Not Available	786	Open in IMG/M
3300015371\|Ga0132258_12204232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1383	Open in IMG/M
3300015374\|Ga0132255_103440646	Not Available	674	Open in IMG/M
3300018433\|Ga0066667_10215372	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300018468\|Ga0066662_11018962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300019888\|Ga0193751_1043521	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300020199\|Ga0179592_10051498	Not Available	1872	Open in IMG/M
3300020583\|Ga0210401_10923292	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300021170\|Ga0210400_10592174	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300021178\|Ga0210408_10372106	Not Available	1139	Open in IMG/M
3300021178\|Ga0210408_10797588	Not Available	740	Open in IMG/M
3300021559\|Ga0210409_10911533	Not Available	753	Open in IMG/M
3300022531\|Ga0242660_1188636	Not Available	561	Open in IMG/M
3300022533\|Ga0242662_10239690	Not Available	585	Open in IMG/M
3300022726\|Ga0242654_10338488	Not Available	563	Open in IMG/M
3300022756\|Ga0222622_10773110	Not Available	701	Open in IMG/M
3300025910\|Ga0207684_10017868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6080	Open in IMG/M
3300025910\|Ga0207684_10448730	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300025916\|Ga0207663_10548409	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025928\|Ga0207700_10511743	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300026490\|Ga0257153_1036150	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300026490\|Ga0257153_1070354	Not Available	706	Open in IMG/M
3300026557\|Ga0179587_10125909	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300026557\|Ga0179587_10238190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1162	Open in IMG/M
3300027383\|Ga0209213_1044526	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300027480\|Ga0208993_1022919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1100	Open in IMG/M
3300027521\|Ga0209524_1013168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1673	Open in IMG/M
3300027546\|Ga0208984_1018953	Not Available	1382	Open in IMG/M
3300027583\|Ga0209527_1133974	Not Available	551	Open in IMG/M
3300027605\|Ga0209329_1047536	Not Available	912	Open in IMG/M
3300027610\|Ga0209528_1036996	Not Available	1079	Open in IMG/M
3300027663\|Ga0208990_1001913	All Organisms → cellular organisms → Bacteria	6333	Open in IMG/M
3300027663\|Ga0208990_1037802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1502	Open in IMG/M
3300027663\|Ga0208990_1045555	Not Available	1334	Open in IMG/M
3300027678\|Ga0209011_1061693	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300027738\|Ga0208989_10008555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3477	Open in IMG/M
3300027903\|Ga0209488_10172288	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300027903\|Ga0209488_10226447	Not Available	1406	Open in IMG/M
3300027903\|Ga0209488_10550589	Not Available	841	Open in IMG/M
3300027903\|Ga0209488_11082116	Not Available	549	Open in IMG/M
3300028047\|Ga0209526_10284052	Not Available	1124	Open in IMG/M
3300028047\|Ga0209526_10588101	Not Available	714	Open in IMG/M
3300028536\|Ga0137415_10301891	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300028536\|Ga0137415_10567380	Not Available	945	Open in IMG/M
3300028536\|Ga0137415_11451667	Not Available	510	Open in IMG/M
3300028906\|Ga0308309_11624835	Not Available	550	Open in IMG/M
3300030991\|Ga0073994_10049654	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300030991\|Ga0073994_11920967	Not Available	655	Open in IMG/M
3300030991\|Ga0073994_12322546	Not Available	607	Open in IMG/M
3300031128\|Ga0170823_16478451	Not Available	627	Open in IMG/M
3300031231\|Ga0170824_118434743	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300031231\|Ga0170824_124108703	Not Available	894	Open in IMG/M
3300031474\|Ga0170818_115086663	Not Available	537	Open in IMG/M
3300032180\|Ga0307471_101338738	Not Available	878	Open in IMG/M
3300032180\|Ga0307471_104067457	Not Available	517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.04%
Host-Associated	Host-Associated	4.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.21%
Plants	Host-Associated → Plants	4.96%
Aquatic	Environmental → Aquatic	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.68%
Loam	Environmental → Terrestrial → Soil → Loam	35.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1004740512	3300000364	Soil	MSIFHGVDQRRAGLGTPIETDGRLSLGQSAVVIAGLSALSWVVLILIVLALFAVL*
INPhiseqgaiiFebDRAFT_1015773682	3300000364	Soil	MSIFHRVDDRRAGRGTRTEADSRLPPGQSIAVIAGLSAVSWAVLISIILAIRAVL*
JGI1027J12803_1046720202	3300000955	Soil	VIECDMSSHRGEMGTFHRVEERRARLGTPTEIEGRLPIGQAAAVIAGLSALSWAILISIVVALRAVL*
JGI12635J15846_101067461	3300001593	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSVLAWVVLIAIVMGLCGLL*
JGI12053J15887_100202525	3300001661	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL*
JGIcombinedJ26739_1002858133	3300002245	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSVLSWVVLIAIVMWLSGLL*
JGIcombinedJ26739_1005073331	3300002245	Forest Soil	FHRVDQRRARPGLPTETEDRLSVGQSVVVIAGLSVISWAVLIAIIMALRAML*
JGIcombinedJ26739_1011625212	3300002245	Forest Soil	LVGQKIKLRPFHRVDQRQARPRSGLPIETEDRLSVGQSVVVIAGLSALSWAVLISIVLALRAML*
Ga0066678_111016811	3300005181	Soil	MPTFHRVEQKRARLGLATEARLPLAQSVVVILGLSMLSWAVLISIVVVLRTIM*
Ga0070713_1005945232	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFHRVDQRQARLRLGLPIETEDRLSVGRSIVVIAGLSALSWAVLISIVLALRAMI*
Ga0070708_1004605492	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEDSRARLGTPTKIKGRLPLGQAAAVISGLSALSWAILISIVVALRAVL*
Ga0070708_1007798951	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IECDMSSHRGEMGTFHRVEDSRARLGTPTEIKGRLPLVPAAGVIAGLSALSWAILFSIVVALRAVL*
Ga0070706_1001045153	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSHRGEMGTFHRVEDSRARLGTPTEIKGRLPLVPAAGVIAGLSALSWAILFSIVVALRAVL*
Ga0070706_1003181882	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEERRARLGTPTEIEGRLALGQAAAVIAGLSALSWAVLISIVVALRAVL*
Ga0070706_1006192721	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	IECDMSSHRGEMGTFHRVEDSRARLGTPTKIKGRLPLGQAAAVISGLSALSWAILISIVVALRAVL*
Ga0070706_1020877851	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSFPRVVQRWARLGLPAEIESRLSLGQSAVVIAGLSALFWAVLISIVVALRAVL*
Ga0070698_1011499592	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LLYVRLACDMSSTGAKMGIFHRVEDSRARLGTPTKIKGRLPLGQAAAVISGLSALSWAILISIVVALRAVT*
Ga0070699_1009165372	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEDSRARLGTPTEIKGRLPLVPAAGVIAGLSALSWAILFSIVVALRAVL*
Ga0070697_1005437202	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEERRALVPPTGAENRLTLGQAAVVIAGLSVLSWAVLISIVVALHAVL*
Ga0070697_1006478132	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEERRARPATPTEIESRLPLGQAAAVIAGLSALSWAVLISIVVALRALL*
Ga0070697_1019232861	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSIFHRVDQRRAGLGTPIETDGRLSLGQSAVVIAGLSALSWVVLILIVLALFAVL*
Ga0066708_103270652	3300005576	Soil	MPTFHRADHRRTTPGLPSEIEGRLPRAQAAVVIAGLSALSWAVLIAIVVAVHAVL*
Ga0066903_1007923074	3300005764	Tropical Forest Soil	MSGFHRVDQRRAKLRPRTETEPRLPIRHSMVVVAGLSSLSWAVLVSIVLALRAVL*
Ga0070717_107246251	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFRRVDQRQARLRSGLPIETEDRLSAGQSVVVIAGLSALSWAVLI
Ga0070717_110346761	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFHRVDQRQARLRLGLPIETEDRLSAGQSVVVLAGLSALSWAVLISIVVALRAVL*
Ga0070717_111197581	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFPFLRVEQRWSRPGLPTEIEGRLPQGQAVVIIAALAVLSWAVLISIVVALRTVL*
Ga0066652_1013589832	3300006046	Soil	MSIFHRVEPGRDRPVLPGEIEGRLPIRQAAVVIVGLSALSWGVLISAVVALRAAL*
Ga0070765_1008237042	3300006176	Soil	MFSFHRVDQKRVRLGPATETEERLSAGQSVAVIVGLSALSWAVLISIFVALRGML*
Ga0070765_1021619652	3300006176	Soil	MFLFHRVDQRRARSGLPAQIEARLPVGQAAVVIAGLSALSWAVLISIVVALRAVL*
Ga0066653_104166061	3300006791	Soil	MRHESALRQKMSSFPLVDLRRARLGLPAEIASRLSLGQSAVVIGGLSALSWAVLFAIAVVMRAVL*
Ga0066665_103363012	3300006796	Soil	MSTFHPVEERRGGLRPPTETENRLSLGRSAIVIVGLSALSWAVLIAIVVALRAVL*
Ga0079221_112353392	3300006804	Agricultural Soil	MSAFHRVDQRRTRLGPPIDADVRLPRGQAVVVIAGLSAMSWAVVIAIIVMIRAVL*
Ga0075425_1009360522	3300006854	Populus Rhizosphere	MGTFHRVEERRVRSGLPTEVEARLPVGQAAVVIAGLSALSWGVLISIVAVWRVVL*
Ga0075434_1014814562	3300006871	Populus Rhizosphere	MGTFHRVDHRRTGPGLPTEIEGRLPLGQSAAVIGGLSALSWVVLISIVLVLRAVL*
Ga0075424_1020254812	3300006904	Populus Rhizosphere	MFTFHRVDHRRARPGLPTEIAGRLPLRRAAVVIAILSVLFWAVLISIVVALRA
Ga0099795_100353345	3300007788	Vadose Zone Soil	MFSFHRVDQRRPRSRSGLPIETEDRIPVGQSVVVIAGLSVLSWAVLISIVLALRAML*
Ga0099795_100944932	3300007788	Vadose Zone Soil	MSSFHRVDQRRPRPGLPSETEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL*
Ga0099795_102580192	3300007788	Vadose Zone Soil	MAFFHRVDQGSARPGQPTETECRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL*
Ga0099795_106218751	3300007788	Vadose Zone Soil	VSKCDKFAPEAKMFTFHRVDQRRTRMGPSIEIQGRLPPGQSAVVIAGLSALSWAVLISIIVALRAVL*
Ga0099828_106338722	3300009089	Vadose Zone Soil	MRQEFAPEAKMSTFHRVDERRAKLGPPTETVSRLPLGQSVVVIAGLSALSWMVLIGLFMALRAIV*
Ga0099792_100226505	3300009143	Vadose Zone Soil	MRHEFAPEAQMFSFHRVDQRRPRSRSGLPIETEDRIPVGQSVVVIAGLSVLSWAVLISIVLALSAML*
Ga0099792_100793203	3300009143	Vadose Zone Soil	MAFFHRVDQGSARPGQPTETERRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL*
Ga0099792_105282501	3300009143	Vadose Zone Soil	MSTCDRAPKPGSPMEIVTRLPRGQSLVVIAGLSALSWAVLIAIVMGLLAAL*
Ga0150983_117585821	3300011120	Forest Soil	ATCVGILRLTMSSFHRVDQKRVRLGPATETEERLSAGQSVAVIVGLSALSWAVLISIFVALRGML*
Ga0137382_100362975	3300012200	Vadose Zone Soil	MSTFHRVDHKRTRPGLADGIEGRLAVGRSALVIAGLSALSWAVLISIVVALRAAL*
Ga0137363_109960471	3300012202	Vadose Zone Soil	MSSFHRVDQRRPRPGQPTEAEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL*
Ga0137399_101372774	3300012203	Vadose Zone Soil	MAFFHRVDRGSARPGQPTETECRLPLGQSLVVIAGLSALSWAVLIG
Ga0137399_103016002	3300012203	Vadose Zone Soil	MAFFHRVDQRPARPGQPTETERRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL*
Ga0137399_106859992	3300012203	Vadose Zone Soil	MRHEFAPEAQMFSFHRVDQRRPRSRSGLPIETEDRIPVGQSVVVIAGLSVLSWAVLISIVLALRAML*
Ga0137376_102939082	3300012208	Vadose Zone Soil	VSKCDKFAPEAKMFTFHRVDQRRTRMGPSIEIQNRLPPGQSAVVIAGLSALSWAVLISIIVALRAVL*
Ga0137376_107610391	3300012208	Vadose Zone Soil	RRARLVPPTETENRLTLGQAAVVIAGLSALSWAVLITVVLALRALL*
Ga0137385_103814131	3300012359	Vadose Zone Soil	MSTFHRVDERRAKLRPPTETVSRLPPGQSVVVIAGLAALSWAVLIA
Ga0137360_115828881	3300012361	Vadose Zone Soil	MAFFHRVVQGSARPGQPTETERRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL*
Ga0137361_105751402	3300012362	Vadose Zone Soil	MAFFHRVDQGSARPGQPTETERRLPLGQSLVVITGLSALSWAVLIGTVIGLRAVL*
Ga0150984_1133804842	3300012469	Avena Fatua Rhizosphere	EVEMPTFHRLEQKRARLGQPIDTEARLSLAQSAVVIVGLSALSWAVLISIVMGLRAVL*
Ga0137358_100219441	3300012582	Vadose Zone Soil	SDGDVRSHRGKMCTLHRVEERRTRLGSPPERESRLPLAQAAAVIAGLSVLSWAVLIAIIASRAVL*
Ga0137358_103591052	3300012582	Vadose Zone Soil	MSTFHHVDQRQARLGLPTETERRLSHGQSAVVIVSLSALSWALLISIVVALRAVLF*
Ga0137358_105808762	3300012582	Vadose Zone Soil	MFTFHRVDQRRTRMGPSIEIQGRLPPGQSAVVIAGLSALSWAVLISIIVALRAVL*
Ga0137358_107999861	3300012582	Vadose Zone Soil	MSTFHRVDDRRAKLGPPTETVSRLPPGQSVVVIAGLSVLSWVVLIALFMALRAIEARPV*
Ga0137398_100039095	3300012683	Vadose Zone Soil	MCTLHRVEERRTRLGSPPERESRLPLAQAAAVIAGLSVLSWAVLIAIIASRAVL*
Ga0137398_102204942	3300012683	Vadose Zone Soil	MFTFHRVDQRRTWMGPSIEIEGRLPVGQSVVVIAGLSALSWAVLISIVVALRAVL*
Ga0137395_104554982	3300012917	Vadose Zone Soil	MFTFHRVDQRRTWMGPSIEIEGRLPVGQSVVVIAGLSALSWAVLISIVVALRAAL*
Ga0137395_105779221	3300012917	Vadose Zone Soil	MAFFHRVDRGSARPGQPTETECRLPLGQSLVVIAGLSALSWAALITIVIGLRALV*
Ga0137359_100816594	3300012923	Vadose Zone Soil	MFTFHRVDQRRTWMGPSIEIEGRLPVGQSAVVIAGLSALSWAVLISIIVALRAVL*
Ga0137359_104997344	3300012923	Vadose Zone Soil	HHVDQTRARLGLPTETERRLSHGQSAVVIVSLSALSWALLISIVVALRAVLF*
Ga0137413_105072251	3300012924	Vadose Zone Soil	MAFFHRVDRGSARPGQPTETECRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL*
Ga0137413_106658151	3300012924	Vadose Zone Soil	MSTFHHVDQRPARLGLPTETERRLSHGQSAVVIISLSALSWALLISIVVALRAVLF*
Ga0132258_122042323	3300015371	Arabidopsis Rhizosphere	MRHDFASEAMMSTFHRVEPGRVKPVLPSKIEGRLPMGQAAVVIAGLSALSWAVLISAIVALRAAL*
Ga0132255_1034406461	3300015374	Arabidopsis Rhizosphere	MRHDFASEAMMSPFHRVEPGRVKPVLPNKIEGRLPMGQAAVVIAGLSALSWAVLISAIVALRAAL*
Ga0066667_102153722	3300018433	Grasslands Soil	MSTFHPVEERRGGLRPPTETENRLSLGRSAIVIVGLSALSWAVLIAIVVALRAVL
Ga0066662_110189622	3300018468	Grasslands Soil	MRTFHRLEQRRARLGQPIDTEARLPLAQSAVVIVGLSALSWGVLISIVI
Ga0193751_10435213	3300019888	Soil	MSTFNRVDHRRARLGLPTETEVRLPRGQAVVVIVGLSALSWGVVIAIVVAIRAVL
Ga0179592_100514983	3300020199	Vadose Zone Soil	MRHEFAPEAQMFSFHRVDQRRPRSRSGLPIETEDRIPVGQSVVVIAGLSVLSWAVLISIVLALRAML
Ga0210401_109232922	3300020583	Soil	MSSFHRVDQKRVRLGPATETEERLSAGQSVAVIVGLSALSWAVLISIFVALRGML
Ga0210400_105921741	3300021170	Soil	MFPFLRVDFRRPRPGLPAEIEARLPVGKAAVVIAGLSALSWAVLISIVLALRAIL
Ga0210408_103721061	3300021178	Soil	VIECDMSPNPEARMSSFHRVEQRRPRRGLPTETEGHRLPVAQSVVVITGLSVLSWAVLISIVLALRAML
Ga0210408_107975882	3300021178	Soil	MFSFHRVDQKRVRLGPATETEERLSAGQSVAVIVGLSALSWAVLISIFVALRGML
Ga0210409_109115331	3300021559	Soil	MSFFHRVDQRQARARLGLPIETEDRLSVGQSVVVIAGLSMLSWAVLIATIMALRAML
Ga0242660_11886361	3300022531	Soil	MSFFHRVDQRQARPRLGLAIETEDRLSVGQSVVVIAGLSALSWAVLISIVLALRAML
Ga0242662_102396902	3300022533	Soil	VDFRWSRLGLPTEIEGRLPLGQAVLVIAGLSALSWAVLISIVLALRALL
Ga0242654_103384881	3300022726	Soil	LRLTMFSFHRVDQKRVRLGPATETEERLSAGQSVAVIVGLSALSWAVLISIFVALRGML
Ga0222622_107731101	3300022756	Groundwater Sediment	GDRMRHEFAPRQRMRTFHRVDQRRARPGLPTEMQDRLPVGQAAVVIAGLSALCWASLIAIVVALRAVL
Ga0207684_100178683	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEERRARLGTPTEIEGRLPLGQAAAVIAGLSALSWAILISIVVALRAVL
Ga0207684_104487301	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGTFHRVEDSRARLGTPTKIKGRLPLGQAAAVISGLSALSWAILISIVVALRAVL
Ga0207663_105484091	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSFFHRVDQRQARPRLGLPIETEDRLSVGQSVVVIAGLSALSWAVLISIVLALRAML
Ga0207700_105117432	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MFSFHRVDQRQARPRLGLPIETEDRLSVGQSAVVIAGLSALSWAVLIATIMALRAML
Ga0257153_10361502	3300026490	Soil	MSSFHRVDQRRPRPGQPTEAEGRLPLAQSVAVIAGLSVLSWVVLIAIVMGLCGLL
Ga0257153_10703541	3300026490	Soil	MFSFYRLDQRQARSRSGLPIETEDRLPVGQSVVVIAGLSALSWAVLISIVLAL
Ga0179587_101259091	3300026557	Vadose Zone Soil	MAFFHRVVQGSARPGQPTETERRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL
Ga0179587_102381902	3300026557	Vadose Zone Soil	MFTFHRVDQRRTWMGPSIEIEGRLPVGQSVVVIAGLSALSWAVLISIVVALRAVL
Ga0209213_10445262	3300027383	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL
Ga0208993_10229191	3300027480	Forest Soil	MAFFHRVDQGSARPGQPTETERRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL
Ga0209524_10131683	3300027521	Forest Soil	MFPFYRVDQTIAEQRRARLGLPTEGRLTLGQSVVVIAGLSALSWAVLISIVLALRAML
Ga0208984_10189532	3300027546	Forest Soil	MSSFHRVDQRRPRPGLPSETEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL
Ga0209527_11339741	3300027583	Forest Soil	VDQRRARSRSGPQIETEDRLSVGQSAVVIAGLSALSWAVLISIVLALRAML
Ga0209329_10475362	3300027605	Forest Soil	LVGQKIKLRPFHRVDQRQARPRSGLPIETEDRLSVGQSIVVIAGLSVLSWAVLISIVLALRAML
Ga0209528_10369963	3300027610	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSVLSWVVLIAIVMWLSGLL
Ga0208990_10019135	3300027663	Forest Soil	MCTLHRVEERRTRLGSPPERESRLPLAQAAAVIAGLSVLSWAVLIAIIASRAVL
Ga0208990_10378023	3300027663	Forest Soil	VDQRRPRPGLPSETEGRLPLAQSVAVIAGLSALAWVVLIAIVMGLCGLL
Ga0208990_10455552	3300027663	Forest Soil	MFSFHRVDQRRPRSRSGLPIETEDRIPVGQSVVVIAGLSVLSWAVLISIVLALRAML
Ga0209011_10616931	3300027678	Forest Soil	MSSFHRVDQRRPRPGLPTETEGRLPLAQSVAVIAGLSVLSWVVLIA
Ga0208989_100085555	3300027738	Forest Soil	MCTLHRVEERRTRLGSPPERESRLPLAQAAAVIAGLSVLSWAVLIAIIASLRAVL
Ga0209488_101722883	3300027903	Vadose Zone Soil	MFTFHRVDQRRTRIGPSIEIEGRLPVGQSVVVIAGLSALSWAVLISIVVALRAVL
Ga0209488_102264472	3300027903	Vadose Zone Soil	MCTFHRDQRRARPGLPTELEARLPAGQAAFVIASLSAFSWAVLIAIVMGLRAVL
Ga0209488_105505892	3300027903	Vadose Zone Soil	MSSFHRVDQRRARPGLPTEIESRLPIGQSVVVIAGLSVLSWAVLISIVVALRAVL
Ga0209488_110821161	3300027903	Vadose Zone Soil	MSTFHHVDQGRARPDLPTETEGRLSQGQSGIVIASLSALSWAVLISIVVALR
Ga0209526_102840522	3300028047	Forest Soil	MFPFYRVDQTIAEQRRARLALPTEGRLTRGQSVVVIAGLSVLAWAVLIVIIMGLRAAP
Ga0209526_105881012	3300028047	Forest Soil	MFTFHRVDQRRTRMGPSIEIEGRLPLGQSAVVIAGLSALSWAVMISIVVALRAVL
Ga0137415_103018912	3300028536	Vadose Zone Soil	MAFFHRVDRGSARPGQPTETECRLPLGQSLVVIAGLSALSWAVLIGTVIGLRAVL
Ga0137415_105673803	3300028536	Vadose Zone Soil	MSTFHHVDQRPARLGLPTETERRLSHGQSAVVIISLSALSWALLISIVVALRAVLF
Ga0137415_114516671	3300028536	Vadose Zone Soil	MRQEFAPEAKMSTFHRVDERRAKLGPPTETVSRLPLGQSVVVIAGLSALSWAVLIASFVVLRAIV
Ga0308309_116248351	3300028906	Soil	MFLFHRVDQRRARSGLPAQIEARLPVGQAAVVIAGLSALSWAVLISIVVALRA
Ga0073994_100496543	3300030991	Soil	MFTFHRVDQRRTRMGPSIEIEGRLPLGQSAVVIAGLSALSWAVMISIVVA
Ga0073994_119209672	3300030991	Soil	FFHRVDQRPARPGQPTETERRLPLGQSLVVIAGLSALSWAALITIVIGLRALV
Ga0073994_123225462	3300030991	Soil	MSSFHPVDQRQARPGLPTEIEDRLPMGQAVMVIAGLAVLCWAVLIAIVM
Ga0170823_164784511	3300031128	Forest Soil	MSFFHRVDQRQARPRLSLPIETEDRLPVGQSVVVIAGLSALSWAVLISIVLALRAML
Ga0170824_1184347432	3300031231	Forest Soil	MFSFHRVDQRQARSRSGLPIEIETEDRLPVGQSVVVVAGLSALSWAVLISIVLALRA
Ga0170824_1241087032	3300031231	Forest Soil	MFSVNRRQFAAEATMSIFHRLDERRARLGPPTETENRLTLGQSAVVIAGLSALSWAVLISIVLALRAML
Ga0170818_1150866632	3300031474	Forest Soil	MSFFHRVDQRQARPRLSLPIETEDRLSVGQSVVVIVGLSALSWAVLKKK
Ga0307471_1013387382	3300032180	Hardwood Forest Soil	MGTFHRVGERRVRPGLPTEVEARLPVGQAAVVIGGFSALSWVVLISIVLVLRAVL
Ga0307471_1040674572	3300032180	Hardwood Forest Soil	MPSCHRVDQRRARLGLAGIESRLALGQSAVVIAGLSALSWAILISIVVALRAAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072547

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences