Metagenome / Metatranscriptome Family F072505

Basic Information
Family ID	F072505
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	54 residues
Representative Sequence	KTLTAPVFIFQLTSQFKPAEAAAVATLLFAISFVLVLVTSRLIARNEAST
Number of Associated Samples	108
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (23.967 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.843 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1deepsgr_00476140 2C688J13580_10461581 3Ga0062589_1006335811 4Ga0062589_1013708322 5Ga0062589_1026166441 6Ga0062590_1011136722 7Ga0062590_1016233072 8Ga0063356_1040775941 9Ga0062595_1003482342 10Ga0062383_106762372 11Ga0062594_1028646752 12Ga0066685_106979951 13Ga0066675_114410612 14Ga0068869_1013848461 15Ga0070694_1012616031 16Ga0070708_1000200088 17Ga0066682_104629042 18Ga0070662_1016898051 19Ga0070698_1009760902 20Ga0070697_1020266071 21Ga0066701_104111042 22Ga0066704_101905863 23Ga0066700_107699062 24Ga0066705_103713492 25Ga0070702_1010173652 26Ga0070702_1013762882 27Ga0066903_1025369692 28Ga0081539_102144892 29Ga0066651_107635512 30Ga0066656_103767902 31Ga0075422_100103501 32Ga0066659_107307481 33Ga0075430_1007460842 34Ga0075434_1001650404 35Ga0075434_1025270382 36Ga0075429_1005190772 37Ga0074063_138999842 38Ga0079218_140142541 39Ga0066710_1019033512 40Ga0066710_1031454442 41Ga0105098_104280891 42Ga0105107_105803521 43Ga0099827_119995511 44Ga0105245_106469833 45Ga0066709_1018054442 46Ga0111538_108652491 47Ga0105242_122654621 48Ga0105248_114994232 49Ga0126307_100197141 50Ga0105063_10398361 51Ga0105084_11020722 52Ga0126310_101440323 53Ga0126310_117332791 54Ga0134128_121293601 55Ga0134122_119216852 56Ga0137374_102020681 57Ga0137376_103045161 58Ga0137376_109543262 59Ga0137372_102780233 60Ga0137372_106636031 61Ga0137375_110459281 62Ga0157285_102735442 63Ga0157293_103224882 64Ga0157291_103919081 65Ga0157298_101173371 66Ga0164300_105981392 67Ga0164307_117543892 68Ga0075326_10692181 69Ga0157380_110891362 70Ga0190266_101713232 71Ga0184610_11719741 72Ga0184620_103189822 73Ga0184638_10283281 74Ga0184638_10678183 75Ga0184619_104740962 76Ga0184640_102125951 77Ga0184632_103124251 78Ga0066667_108488772 79Ga0066667_110222671 80Ga0190268_100537401 81Ga0190268_100637973 82Ga0190270_105029313 83Ga0190271_138701631 84Ga0190264_116039071 85Ga0222622_105363241 86Ga0210115_10210873 87Ga0207707_113842572 88Ga0207690_110521382 89Ga0207669_101128163 90Ga0207712_104163263 91Ga0207675_1007057592 92Ga0209577_102699473 93Ga0209077_11432842 94Ga0209382_122943461 95Ga0247828_105157571 96Ga0307293_101493312 97Ga0307323_101643532 98Ga0307287_102587491 99Ga0307284_100450303 100Ga0307503_103576891 101Ga0307296_100915321 102Ga0307312_110389941 103Ga0307499_101434851 104Ga0307497_106854702 105Ga0307506_101191182 106Ga0310892_102533421 107Ga0307409_1019982261 108Ga0310906_111063152 109Ga0307415_1016642021 110Ga0307472_1018850351 111Ga0315275_106980783 112Ga0214472_104637571 113Ga0316620_123450362 114Ga0316626_106842392 115Ga0326732_10629432 116Ga0316616_1006411301 117Ga0316616_1027354322 118Ga0247830_105659912 119Ga0334961_012863_1220_1390 120Ga0334962_029066_552_713 121Ga0334913_111206_2_178
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1deepsgr_00476140 2C688J13580_10461581 3Ga0062589_1026166441 4Ga0063356_1040775941 5Ga0062383_106762372 6Ga0062594_1028646752 7Ga0066685_106979951 8Ga0066675_114410612 9Ga0070708_1000200088 10Ga0070698_1009760902 11Ga0070697_1020266071 12Ga0066701_104111042 13Ga0066705_103713492 14Ga0081539_102144892 15Ga0066659_107307481 16Ga0075434_1025270382 17Ga0074063_138999842 18Ga0079218_140142541 19Ga0066710_1019033512 20Ga0066710_1031454442 21Ga0105107_105803521 22Ga0105245_106469833 23Ga0066709_1018054442 24Ga0126307_100197141 25Ga0105063_10398361 26Ga0126310_117332791 27Ga0157285_102735442 28Ga0184620_103189822 29Ga0190270_105029313 30Ga0190271_138701631 31Ga0210115_10210873 32Ga0209577_102699473 33Ga0307296_100915321 34Ga0307312_110389941 35Ga0315275_106980783 36Ga0326732_10629432 37Ga0334961_012863_1220_1390 38Ga0334962_029066_552_713
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0066667_110222671 2deepsgr_00476140 3C688J13580_10461581 4Ga0062589_1006335811 5Ga0062589_1013708322 6Ga0062589_1026166441 7Ga0062590_1016233072 8Ga0062383_106762372 9Ga0062594_1028646752 10Ga0066685_106979951 11Ga0070708_1000200088 12Ga0070698_1009760902 13Ga0070697_1020266071 14Ga0066705_103713492 15Ga0070702_1010173652 16Ga0066656_103767902 17Ga0075422_100103501 18Ga0066659_107307481 19Ga0074063_138999842 20Ga0079218_140142541 21Ga0066710_1031454442 22Ga0066709_1018054442 23Ga0126307_100197141 24Ga0126310_101440323 25Ga0126310_117332791 26Ga0137372_102780233 27Ga0137372_106636031 28Ga0137375_110459281 29Ga0164300_105981392 30Ga0066667_108488772 31Ga0190268_100537401 32Ga0190268_100637973 33Ga0190271_138701631 34Ga0210115_10210873 35Ga0209577_102699473 36Ga0209382_122943461 37Ga0247828_105157571 38Ga0307287_102587491 39Ga0307312_110389941 40Ga0307497_106854702 41Ga0307506_101191182 42Ga0310892_102533421 43Ga0310906_111063152 44Ga0307472_1018850351 45Ga0315275_106980783 46Ga0316620_123450362 47Ga0316626_106842392 48Ga0326732_10629432 49Ga0316616_1006411301 50Ga0316616_1027354322 51Ga0334961_012863_1220_1390 52Ga0334962_029066_552_713 53Ga0334913_111206_2_178
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00528	BPD_transp_1	39.67
PF00005	ABC_tran	9.92
PF08402	TOBE_2	0.83
PF04095	NAPRTase	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.64%
Host-Associated	Host-Associated	17.36%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.57%
Plants	Host-Associated → Plants	17.36%
Terrestrial	Environmental → Terrestrial	71.07%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.13%
Marine	Environmental → Aquatic → Marine	0.83%
Peat	Environmental → Terrestrial → Peat	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.05%
Sediment	Environmental → Aquatic → Sediment	6.61%
Soil	Environmental → Terrestrial → Soil	70.25%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.31%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Loam	Environmental → Terrestrial → Soil → Loam	7.44%
Sand	Environmental → Terrestrial → Soil → Sand	1.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.22%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.83%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.13%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.79%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.83%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M

Showing 1 to 10 of 108 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_00476140	2199352025	Soil	VIVSGNIIGKTFTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
C688J13580_10461581	3300001205	Soil	GNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLVTGAVVKRREVTE*
Ga0062589_1006335811	3300004156	Soil	VVIVSGNIIGKTLTAPVLISQLASQFQLDEAAAVATVLFTISFVLVLVTERLVGARNKDAV*
Ga0062589_1013708322	3300004156	Soil	VILVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATSKLVKTREVSE
Ga0062589_1026166441	3300004156	Soil	SGNLTGKTLTAPVFIFQLTSQFKYAEAAAVSALLFGLAFLLVIVTERLVSKRTAGYAE*
Ga0062590_1011136722	3300004157	Soil	VVIVSGNIIGKTLTAPVLIFQFASQFRTEEAAAVSTLLFAISFVLVLVTERLVGRKKRGLA*
Ga0062590_1016233072	3300004157	Soil	VVIVSGNIIGKTLTAPVLIYQLASQFQPNQAAAVATLLFAISFVLVLVTERLIGRGRAAE
Ga0063356_1040775941	3300004463	Arabidopsis Thaliana Rhizosphere	APVFIFQLANQFRPVEAAAVATVLFALSFVLVLVTGRLLRRKEES*
Ga0062595_1003482342	3300004479	Soil	TLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGKLAKRREVSE*
Ga0062383_106762372	3300004778	Wetland Sediment	SGNLTSKTMTAPYFIFQLTNQFKPEEAAAVATMLFAISFLLVMLTSRLVRTERKEAKA*
Ga0062594_1028646752	3300005093	Soil	EIGSVILVSGNRTGHTLTAPVFIFQLTGQFRFAEAAAVATLLFAISFVLVLATGRLLRRKEADG*
Ga0066685_106979951	3300005180	Soil	EFGAIVIVSGNKTGTLTAPVFIFQLASQFKTAQAAAVASVFFALSFVMVLLTARLLRRKEEL*
Ga0066675_114410612	3300005187	Soil	PVFIFQLTSQFKPSQAAAVATLLFAISFVLVLVTSRLIARDEASA*
Ga0068869_1013848461	3300005334	Miscanthus Rhizosphere	SGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARKQDAV*
Ga0070694_1012616031	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARKQDAV*
Ga0070708_1000200088	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TGKTLTAPVFIFQLTSQFRYAEAAAVSTLLFVISASLVLVTERLVSTRREAP*
Ga0066682_104629042	3300005450	Soil	VFIFQLTSQFKPAQAAAVATLLFGLSFVLVLVTSRLIARNEASA*
Ga0070662_1016898051	3300005457	Corn Rhizosphere	TAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV*
Ga0070698_1009760902	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VLVSGNRPGETLTAPVFIFQLTGQFRPEEAAAVATLMFGISFVLVLITARLLRRREAA*
Ga0070697_1020266071	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SGNIIGKTLTAPYLIFQFASQNRPEEAAAVATVLFAISFVLVLVTERLVGLRRKESA*
Ga0066701_104111042	3300005552	Soil	GNIPKKTLTAPVFIFQLTSQFKPAEAAAVATLLFAISFVLVLVTTRLIARNEAPA*
Ga0066704_101905863	3300005557	Soil	GNIPKKTLTAPVFIFQLTSQFKPSQAAAVATLLFAISFVLVLVTSRLIARDEASA*
Ga0066700_107699062	3300005559	Soil	TLTAPVFIFQLTSQFKPSQAAAVATLLFAISFVLVLVTSRLIARDEASA*
Ga0066705_103713492	3300005569	Soil	GRTLTAPVFIFQLTSQFHYAQAAAISSLLFALSFVLVLVTERLVSRRAEGSWA*
Ga0070702_1010173652	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IVIVSGNIIGKTLTAPVLIFQFASQFRTDEAAAVATLLFGLSFVLVLVTERLLGVRRKRGVP*
Ga0070702_1013762882	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARKQDAV*
Ga0066903_1025369692	3300005764	Tropical Forest Soil	GHTLTAPVFIFSLTSQSRFAEAAAVATFLFAISFVLVLATSKLVKQREVSE*
Ga0081539_102144892	3300005985	Tabebuia Heterophylla Rhizosphere	GNRSGETLTAPVFIFQLTNQFRPAEAASIATLMFAISFVLVLVTSRLIARKAEA*
Ga0066651_107635512	3300006031	Soil	AGNIPKKTLTAPVFIFQLTSQFKPAQAAAVATLLFGLSFVLVLVTSRLIARNEASA*
Ga0066656_103767902	3300006034	Soil	LVSGNKTGHTLTAPVFIFQLTSQFRPAEAAAVATVLFAISFVLVLVTSRLLRRNEAVE*
Ga0075422_100103501	3300006196	Populus Rhizosphere	GNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGGRRTGE*
Ga0066659_107307481	3300006797	Soil	HRTLTAPVYIFQLVSQFKYAEAAAVSALLFALAFVLVLITERLVSRGSRGFRAS*
Ga0075430_1007460842	3300006846	Populus Rhizosphere	SGNLSGKTLTAPVFIFQLANQFRPAEAAAIATLMFAISFVLVLLTSRFLGRAAQA*
Ga0075434_1001650404	3300006871	Populus Rhizosphere	LTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARKQDAV*
Ga0075434_1025270382	3300006871	Populus Rhizosphere	TLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLIGGGKGAE*
Ga0075429_1005190772	3300006880	Populus Rhizosphere	TAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGGGRRSAE*
Ga0074063_138999842	3300006953	Soil	VSGNRTGKTLTAPVFIFQLTSQFRASEAAAVATLLFAISFVLVMVTTRILRRQEGRI*
Ga0079218_140142541	3300007004	Agricultural Soil	AIVIISGNITGRTLTAPVFVFQLASQFRPEDAAAVAGVLFLISFAIVLTVDRLVNKKVAR
Ga0066710_1019033512	3300009012	Grasslands Soil	VSGNITGKTLTAPVFIFQLTSQFRPEQAAAVATLLFSVSFVLVLITERLVHRRRDVP
Ga0066710_1031454442	3300009012	Grasslands Soil	SGNKTGTLTAPVFIFQLTSQFRPAEAAAVASILFAMSFVLVLVTARLLRRKEEA
Ga0105098_104280891	3300009081	Freshwater Sediment	NIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGSRGKDAV*
Ga0105107_105803521	3300009087	Freshwater Sediment	LTNTKTAPILIFQLTSQFKPEEAAAVATLLFAISFVLVLVTTRLVRTERKEAEA*
Ga0099827_119995511	3300009090	Vadose Zone Soil	NIPKKTLTAPVFIFQLTSQFKPAEAAAVATLLFAFSFVLVLVTSRLIARKEAPV*
Ga0105245_106469833	3300009098	Miscanthus Rhizosphere	LTAPVFIFQLTGQFRFAEAAAVATLLFAISFVMVLATGRLLRRKESDG*
Ga0066709_1018054442	3300009137	Grasslands Soil	LTAPVFIFQLVSQFRYPEAAAVSTVLFALSFLLVLVTERLVRQRTDGFWA*
Ga0111538_108652491	3300009156	Populus Rhizosphere	PVFIFQLTNQFRPAEAAAVATLMFAISFVVVLLTARLLTRKEEA*
Ga0105242_122654621	3300009176	Miscanthus Rhizosphere	SGNIIGKTLTAPVLIFQFASQFRTDEAAAVATLLFGLSFVLVLVTERLLGVRRKRGVP*
Ga0105248_114994232	3300009177	Switchgrass Rhizosphere	LTAPVFIFQLANQFRPVEAAAVATVLFALSFVLVLVTGRLLRRKEES*
Ga0126307_100197141	3300009789	Serpentine Soil	PVLIFQLASQFKPEEAAAIATVLFGISFVLVLVTERLVRGKAPA*
Ga0105063_10398361	3300009804	Groundwater Sand	VSGNIIGKTLTAPVLITQLINGGKPEDAAAVATLLFGLSFVLVLVTERLLPTGRKEAS*
Ga0105084_11020722	3300009811	Groundwater Sand	VVIVSGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAL*
Ga0126310_101440323	3300010044	Serpentine Soil	IVSGNIIGKTLTAPVLIFQFASQFRTEEAAAVSALLFAISFVLVLITERLVGVRKKRAVP
Ga0126310_117332791	3300010044	Serpentine Soil	SGNITGRTLTAPVLISQLAGQFKPEQAAAVATVLFLISFVVVLVTTRLMRTRKEESE*
Ga0134128_121293601	3300010373	Terrestrial Soil	LTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGRLVKQREVSE*
Ga0134122_119216852	3300010400	Terrestrial Soil	APVFIFSLTSQFRFAEAAAVATLLFAISFVLVLVTGSLLKRREVDE*
Ga0137374_102020681	3300012204	Vadose Zone Soil	VVIVSGNIIGKTLTAPVLITQLINGGKPEDAAAVATLLFGLSFVLVLVTERLLPTGRKEAS*
Ga0137376_103045161	3300012208	Vadose Zone Soil	IPRKTLTAPVFIFQLTSQFKPAEAAAVATLLFAISFVLVLVTSRLIARNEAST*
Ga0137376_109543262	3300012208	Vadose Zone Soil	FIFQLTSQFKPAQAAAVATLLFAISFVLVLVTSRLIARNEVSA*
Ga0137372_102780233	3300012350	Vadose Zone Soil	SGNITGKTLTAPVFIFQLTSQFRPEQAAAVATLLFAISFVLVLVTERLVSRRQGAL*
Ga0137372_106636031	3300012350	Vadose Zone Soil	ITGKTLTAPVFIFQLTSQFRPEQAAAVATLLFSVSFVLVLITERLVHRRRDVP*
Ga0137375_110459281	3300012360	Vadose Zone Soil	IIGKTLTAPVLITQLINGGKPEDAAAVATLLFGLSFVLVLVTERLLPTGRKEAS*
Ga0157285_102735442	3300012897	Soil	LTAPVFIFQLASQFRPEEAAAVATLLFAIAFVLVLITSRLTRPREAASE*
Ga0157293_103224882	3300012898	Soil	TAPVFIFSLTSQFRFAEAAAVATLLFAISFVLVLATGKLVKQREESG*
Ga0157291_103919081	3300012902	Soil	ILVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATLLFAISFVLVLATGKLVKQREASE*
Ga0157298_101173371	3300012913	Soil	LTAPVFIFSLTSQFRFAEAAAVATLLFAISFVLVLATGKLVKQREESG*
Ga0164300_105981392	3300012951	Soil	LVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATLLFAISFVLVLLTGSLLKRREGDA*
Ga0164307_117543892	3300012987	Soil	VILVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGKLVKQREASE
Ga0075326_10692181	3300014271	Natural And Restored Wetlands	PVFIFQLTTQFRPLEAAAVATLLFSISFVLVLVTARLLKRKEDDA*
Ga0157380_110891362	3300014326	Switchgrass Rhizosphere	GAVVIVSGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGSRNKDAV*
Ga0190266_101713232	3300017965	Soil	VLVSGNRPGETLTAPVFIFQLTGQFRPDEAAAVATLMFGISFVLVLITARLLKRREAA
Ga0184610_11719741	3300017997	Groundwater Sediment	VIVSGNIIGKTLTARVLIFQLASQFQPNQAAAVATLLFAISFILVLVTERLVGARNKDAV
Ga0184620_103189822	3300018051	Groundwater Sediment	GNIAGKTLTAPVFIYQLANQFRPAEAAAIATLMFTISFVLVLVTARVTRRVEV
Ga0184638_10283281	3300018052	Groundwater Sediment	AVVIVSGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0184638_10678183	3300018052	Groundwater Sediment	AVVIVSGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGTRNKDAV
Ga0184619_104740962	3300018061	Groundwater Sediment	VIVSGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0184640_102125951	3300018074	Groundwater Sediment	NIIGKTLTAPVLITQLINGGKPEEAAAVATLLFGLSFVLVLVTERLLSTGRKETS
Ga0184632_103124251	3300018075	Groundwater Sediment	NRPGETLTAPVFIFQLTGQFRPEEAAAVATLMFGISFVLVLITARLLRRREAA
Ga0066667_108488772	3300018433	Grasslands Soil	GRTLTAPVFIFQLTSQFRTEEAAAVSTLLFAISFVLVLVTERLIDTGRRG
Ga0066667_110222671	3300018433	Grasslands Soil	KTLTAPVFIFQLTSQFKPAEAAAVATLLFAISFVLVLVTSRLIARNEAST
Ga0190268_100537401	3300018466	Soil	VLVAGNRAGETLTAPVFIFQLANQFRPAEAASIATLMFAISFVLVLVTARLLARGAEA
Ga0190268_100637973	3300018466	Soil	VVLVAGNRAGETLTAPVFIFQLANQFRPIEAAAVATLLFSISFVLVLVTARLLKRKEDDA
Ga0190270_105029313	3300018469	Soil	FQLANQFRPIEAAAVATLLFSISFVLVLVTARLLKRKEDDA
Ga0190271_138701631	3300018481	Soil	NKTLTAPVFIFQLTGQFKPEEAAAVSTVLFAISFTLVMVTYKLVSRTGEAI
Ga0190264_116039071	3300019377	Soil	APVFIFQLTGQFRPEEAAAVATLMFGISFVLVLVTARLLRRREAA
Ga0222622_105363241	3300022756	Groundwater Sediment	LTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0210115_10210873	3300025791	Natural And Restored Wetlands	PVFIFQLAAQFKPEEAAAVAAMLFSVSFILVLVTARLNKRKEATS
Ga0207707_113842572	3300025912	Corn Rhizosphere	VILVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGKLVKQREESG
Ga0207690_110521382	3300025932	Corn Rhizosphere	GSVILVSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGRLVKQREVSE
Ga0207669_101128163	3300025937	Miscanthus Rhizosphere	VSGNRTGHTLTAPVFIFSLTSQFRFAEAAAVATFLFAISFVLVLATGKLVKQREESG
Ga0207712_104163263	3300025961	Switchgrass Rhizosphere	SGNIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0207675_1007057592	3300026118	Switchgrass Rhizosphere	IGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0209577_102699473	3300026552	Soil	GRTLTAPVYIFSLVSQFRYPEAAAVSATLFAMSFVLVLVTERLVAPKKDA
Ga0209077_11432842	3300027675	Freshwater Sediment	NIIGKTLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLVGARNKDAV
Ga0209382_122943461	3300027909	Populus Rhizosphere	GNLSGKTLTAPVFIFQLANQFRPAEAAAIATLMFAISFVLVLLTSRFLGRAAQA
Ga0247828_105157571	3300028587	Soil	NETLTAPVFIFQLANQFRPVEAAAVATLLFTLSFVLVLVTGRLLRRKEED
Ga0307293_101493312	3300028711	Soil	VLVSGNIAGKTLTAPVFIYQLANQFRPAEAAAIATLMFTISFVLVLVTARVTRRVEV
Ga0307323_101643532	3300028787	Soil	VVIVSGNIIGKTLTAPYLIFQFASQAKPEEAAAVATLLFAISFVLVLVTERLVGLRRKES
Ga0307287_102587491	3300028796	Soil	SGNIAGKTLTAPVFIYQLANQFRPAEAAAIATLMFTISFVLVLVTARVTRRVEV
Ga0307284_100450303	3300028799	Soil	KTLTAPYLIFQFASQAKPEEAAAVATLLFAISFVLVLVTERLVGLRRKESA
Ga0307503_103576891	3300028802	Soil	VILVSGNRTGHTLTAPVFIFQLTGQFRFAEAAAVATLLFAISFVLVLATGRLLRRKEADG
Ga0307296_100915321	3300028819	Soil	FQLASQFKTAQAAAVASVFFALSFVMVLLTARLLRRKEEV
Ga0307312_110389941	3300028828	Soil	KKTLAAPVYIFQLTQQFRPQEAGAVATLLFAISFALVLITTRLLRREREA
Ga0307499_101434851	3300031184	Soil	VFIFQLTGQFRFAEAAAVATLLFAISFVLVLATGRLLRRKETDG
Ga0307497_106854702	3300031226	Soil	GAIVIVSGNLTGKTLTAPVFIFQLVSQFNYPEAAAVSALLFGTAFVLVMITERLVSKRTAGYAG
Ga0307506_101191182	3300031366	Soil	SVILVSGNRSGETLTAPVFIFQLTSQFRPAEAAAVATLLFAISFVLVLATGRMVRRKEAP
Ga0310892_102533421	3300031858	Soil	AGKTLTAPVFIFQLTNQFRPAEAAAVATLMFAISFVVVLLTARLLSRKEEA
Ga0307409_1019982261	3300031995	Rhizosphere	APVFIFQLANQFRPIEAAAVATLLFSISFVLVLVTARLLKRKEDDA
Ga0310906_111063152	3300032013	Soil	LSGNITGKTLTAPVFIFQLASQFRPEEAAAVATLLFAIAFLLVLITSRLTRPREAASE
Ga0307415_1016642021	3300032126	Rhizosphere	TLTAPVLIFQLASQFQPNQAAAVATLLFAISFVLVLVTERLIGARNKDAV
Ga0307472_1018850351	3300032205	Hardwood Forest Soil	NRTGHTLTAPVFIFSLTSQFRFAEAAAVATLLFAISFVLVLATGKLVKQREESG
Ga0315275_106980783	3300032401	Sediment	GNITGRTLTAPVFIFQLAMSFKPQEAAAVATLLFALSFALVLVTTRLTRLPTEVL
Ga0214472_104637571	3300033407	Soil	VIVSGNIIGKTLTAPVLITQLINGGRPEEAAAVATLLFGLSFALVLVTERLLPTGRKEAA
Ga0316620_123450362	3300033480	Soil	PVFIFQLTSQFRPAEAAAVATGLFTMSFVLVLSTNRLLRRKESSA
Ga0316626_106842392	3300033485	Soil	GNIEGRTKTAPYLIFQLTNQFKPEEAAAVATLLFAISFVLVLVTSRLVRIERKEAKA
Ga0326732_10629432	3300033501	Peat Soil	TLTAPVFIFQLSSRFRTAEAAAVATLLFTISFVLVLVTSRILRRTEGDA
Ga0316616_1006411301	3300033521	Soil	PVFIFQLTTQFKPDQAAAVATLLFAISFALVLFTSRLVRTERKEAKA
Ga0316616_1027354322	3300033521	Soil	VSGNLTNTKTAPILIFQLTSQFKPEEAAAVATMLFAFSFVLVLVTSRLVRTERKEAEA
Ga0247830_105659912	3300033551	Soil	VFIFQLANQFRPIEAAAVATLLFSISFVLVLVTARLLKRKEDDA
Ga0334961_012863_1220_1390	3300034143	Sub-Biocrust Soil	SANLTGKTLTAPVFIFQLASQFRPEEAAAVSTLLFGTSFFLVLITYRVLLRRGEAE
Ga0334962_029066_552_713	3300034144	Sub-Biocrust Soil	ITNRTLTAPVFIFQLASQFRSEEAAAVSAVLFAMSFTLVMITYRLAGNRGDHP
Ga0334913_111206_2_178	3300034172	Sub-Biocrust Soil	LSGNITGRTLTAPVLVAQLAGQFQPEQAAAVATVLFAISFVVVLITTRVLRTRKEEAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072505

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences