Metagenome / Metatranscriptome Family F072457

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072457
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	95 residues
Representative Sequence	MFVLKQFLKALILPPMPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLVDPTKVEPYDAIVVLTGGTIPAEGLIP
Number of Associated Samples	108
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.24 %
% of genes near scaffold ends (potentially truncated)	95.87 %
% of genes from short scaffolds (< 2000 bps)	90.08 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.298 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (7.438 % of family members)
Environment Ontology (ENVO)	Unclassified (35.537 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (29.752 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.59% β-sheet: 0.00% Coil/Unstructured: 50.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF13417	GST_N_3	22.31
PF13410	GST_C_2	19.83
PF14497	GST_C_3	7.44
PF00043	GST_C	4.96
PF09084	NMT1	2.48
PF02698	DUF218	1.65
PF13379	NMT1_2	1.65
PF13531	SBP_bac_11	0.83
PF00857	Isochorismatase	0.83
PF16861	Carbam_trans_C	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	4.96
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	4.96
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.48
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.48
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	1.65
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	1.65
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.83
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.94 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	44.63 %
Unclassified	root	N/A	15.70 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	1.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	44.63 %
Unclassified	root	N/A	15.70 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	1.65 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.83 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	44.63 %
Unclassified	root	N/A	15.70 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	1.65 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.83 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	44.63 %
Unclassified	root	N/A	15.70 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	1.65 %
Candidatus Accumulibacter regalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter regalis	0.83 %
Thioalkalivibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	44.63 %
Unclassified	root	N/A	15.70 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Thioalkalivibrio paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	0.83 %
Acidithiobacillus thiooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus thiooxidans	0.83 %
Candidatus Accumulibacter regalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter regalis	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	44.63 %
Unclassified	root	N/A	15.70 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.83 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.83 %
Thioalkalivibrio paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	0.83 %
Acidithiobacillus thiooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus thiooxidans	0.83 %
Candidatus Accumulibacter regalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter regalis	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104945353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511	Open in IMG/M
3300000789\|JGI1027J11758_12074376	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M
3300000789\|JGI1027J11758_12105426	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300000789\|JGI1027J11758_12631091	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300000789\|JGI1027J11758_12646447	Not Available	557	Open in IMG/M
3300000955\|JGI1027J12803_105554361	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300001431\|F14TB_100332123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	522	Open in IMG/M
3300002407\|C687J29651_10157616	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300004020\|Ga0055440_10195043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300004047\|Ga0055499_10045439	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300004145\|Ga0055489_10131266	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300004157\|Ga0062590_100599259	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300004463\|Ga0063356_102618461	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300004779\|Ga0062380_10350956	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300005183\|Ga0068993_10158649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	766	Open in IMG/M
3300005205\|Ga0068999_10128437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	524	Open in IMG/M
3300005289\|Ga0065704_10656389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300005295\|Ga0065707_10570960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter regalis	699	Open in IMG/M
3300005332\|Ga0066388_104375270	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	720	Open in IMG/M
3300005339\|Ga0070660_101528611	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300005366\|Ga0070659_101390550	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300005444\|Ga0070694_100648366	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300005445\|Ga0070708_101756057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus thiooxidans	576	Open in IMG/M
3300005471\|Ga0070698_102215312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	503	Open in IMG/M
3300005518\|Ga0070699_101436312	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300005518\|Ga0070699_102222368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300005544\|Ga0070686_100728486	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300005713\|Ga0066905_102242006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300005764\|Ga0066903_106474353	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005937\|Ga0081455_10296360	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300006237\|Ga0097621_101360983	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300006845\|Ga0075421_100655961	Not Available	1225	Open in IMG/M
3300006845\|Ga0075421_100740132	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300006846\|Ga0075430_100442660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300006847\|Ga0075431_101471201	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300006854\|Ga0075425_100728287	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300006854\|Ga0075425_100910149	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300006871\|Ga0075434_100507212	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300007004\|Ga0079218_13306949	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300007076\|Ga0075435_101022876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	722	Open in IMG/M
3300009012\|Ga0066710_104388945	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300009147\|Ga0114129_13317167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300009153\|Ga0105094_10682070	Not Available	601	Open in IMG/M
3300009153\|Ga0105094_10856000	Not Available	536	Open in IMG/M
3300009167\|Ga0113563_10463339	All Organisms → cellular organisms → Bacteria → Proteobacteria	1371	Open in IMG/M
3300009553\|Ga0105249_11041315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	888	Open in IMG/M
3300009610\|Ga0105340_1267601	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	737	Open in IMG/M
3300010043\|Ga0126380_12166070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300010358\|Ga0126370_12088783	Not Available	556	Open in IMG/M
3300010366\|Ga0126379_11183653	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300010391\|Ga0136847_10342894	Not Available	1210	Open in IMG/M
3300010396\|Ga0134126_12847264	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300010398\|Ga0126383_11896525	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300011440\|Ga0137433_1046919	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1279	Open in IMG/M
3300012168\|Ga0137357_1082162	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	662	Open in IMG/M
3300012202\|Ga0137363_10006423	All Organisms → cellular organisms → Bacteria	7312	Open in IMG/M
3300012361\|Ga0137360_10337302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1259	Open in IMG/M
3300012489\|Ga0157349_1003336	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1030	Open in IMG/M
3300012915\|Ga0157302_10230432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	682	Open in IMG/M
3300012925\|Ga0137419_10555243	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	918	Open in IMG/M
3300012948\|Ga0126375_12042583	Not Available	508	Open in IMG/M
3300012961\|Ga0164302_11239719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	599	Open in IMG/M
3300012961\|Ga0164302_11641426	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300012989\|Ga0164305_11282379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	639	Open in IMG/M
3300014255\|Ga0075320_1057952	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300014255\|Ga0075320_1061912	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	690	Open in IMG/M
3300014259\|Ga0075311_1071134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	706	Open in IMG/M
3300014272\|Ga0075327_1076725	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	999	Open in IMG/M
3300014301\|Ga0075323_1069221	Not Available	717	Open in IMG/M
3300014883\|Ga0180086_1115663	Not Available	689	Open in IMG/M
3300015241\|Ga0137418_10667074	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	804	Open in IMG/M
3300015245\|Ga0137409_10465996	All Organisms → cellular organisms → Bacteria → Proteobacteria	1085	Open in IMG/M
3300015255\|Ga0180077_1102543	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	602	Open in IMG/M
3300015255\|Ga0180077_1114280	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300015372\|Ga0132256_100731982	Not Available	1105	Open in IMG/M
3300015374\|Ga0132255_100521672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1748	Open in IMG/M
3300017966\|Ga0187776_10484880	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300018052\|Ga0184638_1026051	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300018056\|Ga0184623_10024170	All Organisms → cellular organisms → Bacteria	2713	Open in IMG/M
3300018079\|Ga0184627_10033001	All Organisms → cellular organisms → Bacteria	2619	Open in IMG/M
3300018084\|Ga0184629_10661889	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300018084\|Ga0184629_10664879	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300018429\|Ga0190272_12874607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300018432\|Ga0190275_10566162	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1179	Open in IMG/M
3300018433\|Ga0066667_10514384	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300018433\|Ga0066667_12352805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300024241\|Ga0233392_1005673	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300025159\|Ga0209619_10455606	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300025165\|Ga0209108_10054437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2212	Open in IMG/M
3300025165\|Ga0209108_10365154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	713	Open in IMG/M
3300025313\|Ga0209431_10118307	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2090	Open in IMG/M
3300025319\|Ga0209520_10443249	Not Available	771	Open in IMG/M
3300025324\|Ga0209640_10510314	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300026035\|Ga0207703_11428005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	666	Open in IMG/M
3300027209\|Ga0209875_1013872	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300027617\|Ga0210002_1043733	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	764	Open in IMG/M
3300027682\|Ga0209971_1025055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1425	Open in IMG/M
3300027874\|Ga0209465_10174619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1070	Open in IMG/M
3300028420\|Ga0210366_10200429	Not Available	759	Open in IMG/M
3300028587\|Ga0247828_11089823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300031548\|Ga0307408_100868729	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	823	Open in IMG/M
3300031754\|Ga0307475_11309646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300031858\|Ga0310892_10134736	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1409	Open in IMG/M
3300031901\|Ga0307406_10779433	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	805	Open in IMG/M
3300031940\|Ga0310901_10047969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1387	Open in IMG/M
3300031944\|Ga0310884_10443614	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	753	Open in IMG/M
3300032002\|Ga0307416_100714090	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1092	Open in IMG/M
3300032017\|Ga0310899_10126230	Not Available	1066	Open in IMG/M
3300032179\|Ga0310889_10427106	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	662	Open in IMG/M
3300032828\|Ga0335080_10211506	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300032829\|Ga0335070_11721464	Not Available	568	Open in IMG/M
3300033551\|Ga0247830_10064140	All Organisms → cellular organisms → Bacteria	2469	Open in IMG/M
3300033812\|Ga0364926_035759	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300033814\|Ga0364930_0088289	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1058	Open in IMG/M
3300034090\|Ga0326723_0483328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300034165\|Ga0364942_0280469	Not Available	545	Open in IMG/M
3300034177\|Ga0364932_0232620	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.17%
Host-Associated	Host-Associated	19.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.33%
Aquatic	Environmental → Aquatic	19.83%
Plants	Host-Associated → Plants	19.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.22%
Sediment	Environmental → Aquatic → Sediment	10.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.79%
Marine	Environmental → Aquatic → Marine	4.96%
Freshwater	Environmental → Aquatic → Freshwater	4.13%
Floodplain	Environmental → Terrestrial → Floodplain	3.31%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.83%
Peat	Environmental → Terrestrial → Peat	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.36%
Loam	Environmental → Terrestrial → Soil → Loam	11.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.13%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.31%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.44%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.13%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.13%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.31%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.48%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.83%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.83%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002407	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015255	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300024241	Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1049453531	3300000364	Soil	MFVLKQFVKQLILPPTAWILLLLVVLIFWQRRWARKLFFLTFCLIVILHSGLVGYGLRYPLESRYPPLIDPTRVEPYDAIVVLTSSVHPVSGLIPFPSVDEYMFRRLDEAWRLYRIRPKPILXS
JGI1027J11758_120743762	3300000789	Soil	MFALKQFLKALVLPPLVWMFLLLAVLIWWRRRWARKLLFVTVCLIFVLHSGICSYLLRYPLESRYPPLLEPAKAGPYDAIVVLTASSIPAEGMIPFPSVDGAMFRRLEEAWRLYRIQPKPIIVSG
JGI1027J11758_121054261	3300000789	Soil	MFVLKQFVKQLILPPTAWILLLLVVLIFWQRRWARKLFFLTFCLIVILHSGLVGYGLRYPLESRYPPLIDPTRVEPYDAIVVLTSSVHPVSGLIPFPSVDEYMFRRLDEAWRLYRIRPKPIL
JGI1027J11758_126310912	3300000789	Soil	MFVLKQFLKAFILPPLPWIVMLLAVLIFWRRRWARKLLFVTLCLIAVLHSGIFGYLLRYPLESRYPPLID
JGI1027J11758_126464472	3300000789	Soil	MFILKQFIKQFILPPTPWIFLLLVVLIFWRRSWARKLLLFTFCLIIVLHSGLFGYWLRYPLEAHYPPLIDPTKVEPYDAIVV
JGI1027J12803_1055543613	3300000955	Soil	MFVLKQFLKQFILPPMPWIFLLLVVLIFWQRRWARKLLLFTFCLIIVLHSGLFGYWLRYPLEARYPPLIDPTKAEPYDAIVVLTGSSIRPTGLIPFPSIDESMFRRLEEAWRLYKIQPKPILISGGHVNPFTPAFDGNQIAQDY
F14TB_1003321231	3300001431	Soil	MFVLKQFLKALVLPPFVWMFLLLVVLIWWHRRWARRLLFVTFCLIFVLHSGICGYLLRYPLESRYPPLLEPTKAGPYDAIVVLTSSSIPAGGMIPFPSVDGGMFRRLEEAWRLYRIQPKPIIVSGGH
C687J29651_101576162	3300002407	Soil	MFVLKQFLKQLMLPPVSWLLLLLVVLLFWRRRWARKFLLATLCAIVVLHSGIVGRTLRYPLESRYTSVIDPVLSEPYDAIVVLTGGSIPAGGLIPFPTID
Ga0055440_101950431	3300004020	Natural And Restored Wetlands	MFVLKQFLKELILPPLPWLFLLLIVLIFWRQRWARKLLFVTFCVIVALHSGIVGYGLRYPLESRYPPLMDPAQAEPYDAIVVLTAYSIPA
Ga0055499_100454391	3300004047	Natural And Restored Wetlands	MFILKQFLKALLLPPMPWLLMLLAVLIFWQRHWARKLLFLTFLVILGLHCGPANYALRYQLESRYPALLDPRNAGPYDAIVVLTGGSLPATGLIPFPS
Ga0055489_101312661	3300004145	Natural And Restored Wetlands	MFALKQFLKELVLPPLPWIFLLLAALIFWPRRWARKLLFVTFCLILVLHSGISGYLLRYPLESRYPPLL
Ga0062590_1005992591	3300004157	Soil	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGP
Ga0063356_1026184611	3300004463	Arabidopsis Thaliana Rhizosphere	MFVLKQFLKALVLPPTPWLLMLLAVLIFWQRRWARKLLFLTLVLSTALHSGLVGYALRYPLESRYAPLLDPSALSYDAIVVLTGGMIPP
Ga0062380_103509561	3300004779	Wetland Sediment	MFTLKQFLKVLLLPPTPWVLMVLTVLIFWQRRWARKLLWVTFLLILGLHCGPANRLLRYQLESRYPPLLDPRKAGPYDAIVVLTSGSIPATGLIPFPSIDEAMFRRLDEAWRLYRIQPK
Ga0068993_101586491	3300005183	Natural And Restored Wetlands	MFVLKQFLKELILPPLPWLFLLLIVLIFWRQRWARKLLFVTFCVIVALHSGIVGYGLRYPLESRYPPLMDPAQA
Ga0068999_101284371	3300005205	Natural And Restored Wetlands	MFILKQFLKALLLPPMPWLLMLLAVLIFWQRHWARKLLFLTFLVILGLHCGPANYALRYQLESRYPALLDPRNAGPYDAIVVLTGGSLPATGLIPFPSVNEHMFRRLDEAWRLY
Ga0065704_106563891	3300005289	Switchgrass Rhizosphere	MFVLKQFLKAFLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLELRYPPLIDPNKVGPFDAIVVLTAGSIPAEGLI
Ga0065707_105709602	3300005295	Switchgrass Rhizosphere	MFVLKQFLKALVLPPLVWMFLLLVVLIWWRRRWARRLLFVTFCLIVVLHSGICGYLLRYPLESRYPPLLEPTKAGPYDAI
Ga0066388_1043752702	3300005332	Tropical Forest Soil	MFVLKQFLKQLILPPAPWMFSLLIVLIFWQRRWARKLLFFTFCLIVILHSGLFGYWLRYPLETRYPPLIDPTKAEPYDAIIVLTSSMISPEGLIPFPSIDEGMFRRLEEAWRLYKIRPKPIVISGGHVNPFTPPKNENKIARDYLI
Ga0070660_1015286111	3300005339	Corn Rhizosphere	MFVLKQFLKAFLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIAAEGLIPFPSVDEHMFRR
Ga0070659_1013905502	3300005366	Corn Rhizosphere	MFVLKQFLKAFLLPPIPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGS
Ga0070694_1006483662	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFVLKQFLKVVLLPPTLWLLMLLAVLIFWRRSWARKLLLFTLFFIFALHSGLVNYGLRYPLESQYAPVMDPKAANPYDAIVVLTSSIVPADGLVPFPSIDE
Ga0070708_1017560571	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MFVLKQFLKQLILPPMPWILLLLVVLIYWRRQWTRKLFVFTLCLIVVLHSSLCGYWLRYPLESRYPPLIDPTKAEPYDAIVVLTSSTIVPGGLIPFSSIDEYMFHRLEEAWRLYKIRPKPILVSGGHVNPF
Ga0070698_1022153121	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MFVLKQFLKQLILPPMPWILLLLVVLIYWRRQWARKLFVFTFCLTVVLHSSLCGYWLRYPLESRYPPLIDPTKAEPYDAIVVLTSSTIVPGGLIPFSSIDEYMFHRLEEAWRLYKIRPKPILVSGGHVNPFT
Ga0070699_1014363121	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MFVLKQFLKQFIMPPMPWVVLLLVVLIFWRRSWARKLLLVTFCMIVVLHSGFLAYWLSYPLESRYPPLVD
Ga0070699_1022223681	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MFVLKQFLKQLILPPMPWILLLLVVLIYWRRQWTRKLFVFTLCLIVVLHSSLCGYWLRYPLESRYPPLIDPTKAEPYDAIVVLT
Ga0070686_1007284862	3300005544	Switchgrass Rhizosphere	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIAAEGLIPFPS
Ga0066905_1022420062	3300005713	Tropical Forest Soil	MFVLKQFLKALVLPPLVWMFLLAAVLIWWRRRWARKLLFLTLCLVFVLHSGICGYLLRYPLESRYPPLLEPTKAGPYDAIVVLTGGTNPAGGLIPFPSV
Ga0066903_1064743531	3300005764	Tropical Forest Soil	MFVLKQFLKALILPPMPWLLMLLGVLIFWRRPWARKLLFVAFCLIVVLHSGVVGYLLTYPLESSYAPLIDPTKVEPYDAI
Ga0081455_102963601	3300005937	Tabebuia Heterophylla Rhizosphere	MFVLKQFVKALILPPLPWMLMLLAVLIFWRQRWARKLLFVTFCLIVVLHSGIFGYILRYPLESRYPPLIDPTKVE
Ga0097621_1013609832	3300006237	Miscanthus Rhizosphere	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKV
Ga0075421_1006559611	3300006845	Populus Rhizosphere	MFVLKQFLKALVLPPTPWLLMLLAVLIFWQRRWARKLLFLTLVLSTALHSGLVGYALRYPLESRYAPLLDPSALSYDAIVVLTG
Ga0075421_1007401321	3300006845	Populus Rhizosphere	MFVLKQFLKALILPPMPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIVGFFLSYPLESSYLPLIDPAKVEPYDAIV
Ga0075430_1004426601	3300006846	Populus Rhizosphere	MLLAVLIFWHRRWARKLLLLTLVLITVLHSSLVGYALRYPLESRYAPLLDPGALSYDAIVVLTGSMIPPEGLIPF
Ga0075431_1014712012	3300006847	Populus Rhizosphere	MFVLKQFVKALILPPLPWMLMLLAVLIFWRRRWARKLLFVTFCLIVVLHSGIFGHLLSYPLESRY
Ga0075425_1007282872	3300006854	Populus Rhizosphere	MFVLKQFLKQIILPPNAWILLLLIVLIYWRRRWARKLLLFTFCLIIVLHSGIVGYCLRYPLESRYPPLIDPSPAEPYDA
Ga0075425_1009101492	3300006854	Populus Rhizosphere	MFVLKQFLKALILPPMPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIVGFFLSYPLESSYLPLIDP
Ga0075434_1005072122	3300006871	Populus Rhizosphere	MFVLKQFLKQIILPPNAWILLLLIVLIYWRRRWARKLLLFTFCLIIVLHSGIVGYCLRYPLESRYPPLIDPSPAEPYDAIVVLTSSVIPVGGLIPFPSLD
Ga0079218_133069491	3300007004	Agricultural Soil	MFTLKQFLKALFLPPMPWLLMLLAVLIFWQRRWARKLLFVTLLLALALHCGPLNYALRYQLESRYPPLLDPRK
Ga0075435_1010228762	3300007076	Populus Rhizosphere	MFVLKQFLKQIILPPNAWILLLLIVLIYWRRRWARKLLLFTFCLIIVLHSGIVGYCLRYPLESRYPPLIDPSPAEPYDAIVVLTSSVIPVGGLIPFPSVDEYMFRRLDEAWRLYRI
Ga0066710_1043889452	3300009012	Grasslands Soil	MFVLKQFLKVLILPPMPWMLMLLAVLIFWHRRWGRKLLFVTFGLIVVLHSGIFVYLLRYPLESHYSPLIDPTKVEPY
Ga0114129_133171672	3300009147	Populus Rhizosphere	MFVLKQFLKALVLPPTPWLLMLLAVLIFWHRRWARKLLLLTLVLITVLHSSLVSYALRYPLESRYAPLLDPSALSYDAIVVLTGSMIP
Ga0105094_106820701	3300009153	Freshwater Sediment	MFILKQFLKALLLPPMPWLLLLVAVLIFWQRRWARKLLFVTLLLTVALHCGPANYALRYQLESRYPPLL
Ga0105094_108560002	3300009153	Freshwater Sediment	MFVLKQFLKTLLLPPVPWLLMLLAVLVFWRRSWARKLLLLTFLLIFAWHSGLVNYALRYPLESRYAPLHDPR
Ga0113563_104633391	3300009167	Freshwater Wetlands	MFILKQFLKALLLPPMPWLLLLFAVLIFWQRRWARKLLFLTFMLILGLHWGPVNYALRYQLESRYPPLLDPRKAGAYDAIVV
Ga0105249_110413152	3300009553	Switchgrass Rhizosphere	MFVLKQFLKAFLLPPMPWLILLLAVVVFWRRTWARKLLFLAVLLIIGLHSGLINYALRYPLELRYPPLIDPNKVGPFDAIVVLTAGSIAAEGLIPFPSVDEHMFRRLDEAWRLYKLRPKP
Ga0105340_12676011	3300009610	Soil	MFVLKQFLKVLILPPLPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLIDPTKVEPYDAIVVLTASMIPAEGLIPFPTIDESMFRRLEEAWR
Ga0126380_121660702	3300010043	Tropical Forest Soil	MFVLKQFLKQFILPPTPWIFLLLVVLIFWQRRWARKLLLFTCCLIIVLHSGLFGYWLRYPLEARYPPLIDPTKAEPYDAIVVLTGSSIRPT
Ga0126370_120887831	3300010358	Tropical Forest Soil	MFVLKQFLKALILPPMPWLLMLLGVLIFWRRPWARKLLFVAFCLIVVLHSGVVGYLLNYPLESSYAPLIDPT
Ga0126379_111836531	3300010366	Tropical Forest Soil	MFVLKQFLKALILPPMPWLLMLLGVLIFWRRPWARKLLFVAFCLIVVLHSGVVGYLLTYPLESSYAPL
Ga0136847_103428941	3300010391	Freshwater Sediment	MFVLKQFLKQLMLPPVSWLLLLVFVLIFWRRRWARKLFFAAFCLIIVLHSGLASYGLRWPLEARYTPVIDPAQAEPYDAIV
Ga0134126_128472642	3300010396	Terrestrial Soil	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIA
Ga0126383_118965251	3300010398	Tropical Forest Soil	MFVLKQFLKALILPPMPWMLMLLAVLIFWRRSWARKLLFVTFCLIVALHSGLFGYILRYPLESRYPPLID
Ga0137433_10469191	3300011440	Soil	MFVLKQFLKDLILPPLPWILMLLAVLIFWRRRWARKLLFVTFSLIFVLHNGICGYLLRYPLESLYPPLLSPVKVEPYDAIVVLTASTFPAG
Ga0137357_10821621	3300012168	Soil	MFVLKQFLKDLILPPLPWILMLLAVLIFWRRRWARKLLFVTFSLIFVLHNGICGYLLRYPLESLYPPLLSPVKVEPYDAIVVLTASTFPA
Ga0137363_1000642311	3300012202	Vadose Zone Soil	MFVLKQFLKAFILPPLPWIVMLLAVLIFWRRRWARKLLFVTVCLIAVLHSRIFGYLLRYPHESRYPPLIDPTKVEPY
Ga0137360_103373021	3300012361	Vadose Zone Soil	MFVLKQFLKAFILPPLPWIVMLLAVLIFWRRRWARKLLFVTLCLIAVLHSGIFGYLLRYPLESRYPPLIDPTKVEPYDAIVVLTASMIPAEGLIPFPTIDESM
Ga0157349_10033361	3300012489	Unplanted Soil	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPLIDPNKLGAYDAIVVLTAGSIAAEGLIPFPSVDE
Ga0157302_102304322	3300012915	Soil	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIAAEGLIPFPSVDEHMFRRLDEAW
Ga0137419_105552431	3300012925	Vadose Zone Soil	MFVLKQFLKALLLPPMPWLLMLLAVLIWWRRTWARKLLLITFWLILALHSGPVNYALRYPLEARYPPLIDPSKAGSYDVIVVLTAGSVAAEGLIPFPSVDEHMFRRLDEAWRLYRLRPKPVIISGGHVNPFTPAKDENR
Ga0126375_120425831	3300012948	Tropical Forest Soil	MFVLKQFLKALILPPMPWMLMLLAVLIFWRRGWARKLLFVTFCLIVVLHSGVVGYLLTYPLESSYAPLIDPAK
Ga0164302_112397191	3300012961	Soil	MFVLKQFLKALVLPPLVWMFLLLAVLIWWRRRWARKLLFVTICLIFALHSGICSYLLRYPLESRYPPLLQPAKAGPYDAI
Ga0164302_116414261	3300012961	Soil	MPWLLMLLAVLIWWRRTWARKLLLITFLLILALHSGAVNYALRYPLEARYPPFIDPSKAGSYDAIVVLTGGSIAAEGLIPFPSVDEHMFRRL
Ga0164305_112823791	3300012989	Soil	MFALKQFLKALVLPPLVWMFLLLAVLIWWRRRWARKLLFVTVCLIFVLHSGICSYLLRYPLVSRYPPLLEPAKAGPYDAIVVLTASSIPAEGM
Ga0075320_10579521	3300014255	Natural And Restored Wetlands	VSFKLGSCFQPQIETGNFLNYMFVLKQFLKALLLPPTLWLLLLLGVLTFWHRSWSRKLLLFSVLLIFALHSGLVNFALRYPLESSYVPVLDPTKVGPYDAIVVLTGGITPAGGLIPFS
Ga0075320_10619122	3300014255	Natural And Restored Wetlands	MFVFKQFLKQLILPPMAWILPLVIVLIFWRRQWARKLLLLSIGLIVALHSGIVGYWLRYPLEAHYPALLDESNAGPYDAIVVLTSASIPAG
Ga0075311_10711342	3300014259	Natural And Restored Wetlands	MFVLKQFLKALVLPPTLWLLMLLVVLAFWHRSWSRKLLLFSVLLIVALHSGLVNYALRYPLESSYAPVLDPTKIGPYDAIVVLTGGITPAGGLIPFPTINQSMF
Ga0075327_10767252	3300014272	Natural And Restored Wetlands	MFTLKQFLKELVLPPLPWILLLLAALIFWPRRWARKLLFVTFCLIFVLHSGISGYFLRYPLESRYPALLSPAQVEPYDAIVVLTASTFPAGGLIPFPSVDRSMFR
Ga0075323_10692211	3300014301	Natural And Restored Wetlands	MFVLKQFLKALFLQPTLWLMMLLTVLIFWHRSWARKLLLFTFLFVLALHAGLLNYGLRYPLESRYQPLLDPRRVGPYDAI
Ga0180069_11860312	3300014882	Soil	MFVLKQFLKQLILPPMAWILPLFVVLIFWHRRWARKLLLLALCGISILHSGLFGHWLRYPLESRYAPLLNPQDFDPYQAIVVLTSASIPVGGLVPYPTID
Ga0180086_11156632	3300014883	Soil	MFVLKQFLKVLVLPPTLWLLMLLAVLVFWHRSWARKLLLITFFLIFALHSGPVTYVLRYPLESRYPPLLD
Ga0137418_106670742	3300015241	Vadose Zone Soil	MFVLKQFLKALLLPPMPWLLMLLAVLIWWRRTWARKLLLITFWLILALHSGPVNYALRYPLEARYPPLIDPSKAGSYDVIVVLTAGSVAAEGLIPFPSVDE
Ga0137409_104659961	3300015245	Vadose Zone Soil	MFVLKQFLKVLILPPMPWMLMLLAVLIFWRRHWARKLLFVTFCLIVVLHSGIVGYFLSYPLESSYLPLIDPAKVE
Ga0180077_11025432	3300015255	Soil	MFVFKQFLKQLILPPMAWMLPLFVVLIFWHRRWARKLLFLALCGILLLHSGLFGHWLRYPLESRFAPLLNPQAFEPYQAIVVLTSASIPVGGLVPYPTLDESMFRRLDEAWRLYKIEPKPIIVSGG
Ga0180077_11142802	3300015255	Soil	MFVLKQFLKDLILPPLPWILMLLAVLIFWRRRWARKLLFVTFSLIFVLHNGICGYLLRYPLESLYPPLLSPVKVEPYDAIVVLTASTFPAGGLIPFPSVDGSMLRRLDEAWRLYRMQ
Ga0132256_1007319823	3300015372	Arabidopsis Rhizosphere	MFVLKQFLKAFLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPLIDPNK
Ga0132255_1005216723	3300015374	Arabidopsis Rhizosphere	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIAAEGLIPFPSVDEH
Ga0187776_104848802	3300017966	Tropical Peatland	MFVLKQFLKEFVLPPMPWLLLLLVVLIYWRRRWARTLLLATFCLIFALHSGIVGYWLRYPLESSYSPLLEP
Ga0184634_104834041	3300018031	Groundwater Sediment	MFVLKQFLKQLILPPMAWMLPLFVVLIFWHRRWARTLFFLALCGILMLHSGLFGHWLRYPLESRFAPLLNPQDFEPYQAIVVLTSASIPVGGLV
Ga0184638_10260511	3300018052	Groundwater Sediment	MFVLKQFLKVLILPPVPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLIDPTKFEPYDAIVVLTGGTIPAEGLIPFPSIDKSMFRRLEEA
Ga0184623_100241705	3300018056	Groundwater Sediment	MPWLLMLLAVLIFWHRQWARKLLLITFLLILALHSGSVNYALRYPLESRHPPLLDPRNAGSYEAIVVLTGAMIPASGLIPFPTIDEFMFRRLDEAWRLYRIQPKPIIVSGGHVNPFTADKDENK
Ga0184627_100330011	3300018079	Groundwater Sediment	MPWLLMLLAVLIFWHRQWARKLLLITFLLILALHSGSVNNALRYPLESRHAPLLDPQKAGSYDAIVVLTGAMIPASGLIPFPTIDESM
Ga0184629_106618891	3300018084	Groundwater Sediment	MFVFKQFLKQLILPPMAWMLPLFVVLIFWHRRWARKLLFLALCGILILHSGLFGHWLRYPLESRFAPLLNPQEFEPYQAIVVLTSASIPVGGLVPYPTIDESMFRRLDEAWRLYKIQPKPIIVSGGHVDPFTPDQDENKIARDYL
Ga0184629_106648791	3300018084	Groundwater Sediment	LTLMFVLKQFLKALILPPMPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLIDPTKVEPYDAIVVLTASMI
Ga0190272_128746072	3300018429	Soil	MFTLKQFLKALFLPPMPWLLMLLAVLIFWQRRWARKLLFVTLLLTLALHCGPLNYALRYQLESRYPPLLDPRKVGAYDAIVVLTSGSYPA
Ga0190275_105661621	3300018432	Soil	MFVLKQFLKALVLPPTPWLLMLLAVLIFWHRRWARKLLLLTLVLITALHSGLVSYALRYPLESRYSPLLDPRALSYDAIVVLTGSIIPPEGLIPFPTINEHMFRRLEEAWRLYQIQPR
Ga0066667_105143842	3300018433	Grasslands Soil	MFVLKQFLKVLILPPLSWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLIDPTEVEPYDAIVVLTGGTIP
Ga0066667_123528052	3300018433	Grasslands Soil	MPWLLMLLAVLIWWRRTWARKLLLITFLLILALHSGPVNYALRYPLEARYPPLIDPNKVGSYDAIVVLTAGRLAAEGL
Ga0233392_10056731	3300024241	Deep Subsurface Sediment	MFVLKQFLKQLMLPPVSWLLLLLAVLIFWRRRGARKLFFAAFCLIIVLHSGFASYALRWPLEARYAPLIDPAQAEPYDAIVVLTSASIPAGGLIPFPTIDVAMFRRL
Ga0209619_104556062	3300025159	Soil	MFVLKQFLKQLILPPVSWLLLLVVVLLFWRRRWARKFLLATLCAIVVLHSGIVGWALRYPLESRYTPAIDPAQAEPYDAIVVLTGSSIPAGGLIPFPTIEVA
Ga0209108_100544371	3300025165	Soil	MFVLKQFLKQLMLPPVSWLLLLLVVLLFWRRRWARKFLLATLCAIVVLHSGIVGRTLRYPLESRYTSVIDPVLSEPYDAIVVLTGGSIPAGGLIPFPTIDVAMFRRLDEAWRLYRIRRKP
Ga0209108_103651541	3300025165	Soil	MFVLKQFLKQLILPPVSWLLLLVVVLIFWRRRWARKLFFATFCLIIVLHSGIVSYGLRYPLESRYTPVIDPAQAEPYDAIVVLTSASIPVGGLIPLPTIDVAMFRRLDEAWRLYRIRPKPIVVS
Ga0209431_101183075	3300025313	Soil	MFVLKQFLKQLMLPPVSWLLLLLVVLLFWRRRWARKFLLATLCAIVVLHSGIVGRTLRYPLESRYTSVIDPVLSEPYDAIVVLTGGSIPAGGLIPFPTIDVAMFRRLDEA
Ga0209520_104432492	3300025319	Soil	MFVLKQFLKQLMLPPVSWLLLLLVVLLFWRRRWARKFLLATLCAIVVLHSGIVGRTLRYPLESRYTSVIDPVLSEPYDAIVVL
Ga0209640_105103142	3300025324	Soil	MFVLKQFLKQLILPPVAWLLPLLVVLLFWRRRWARKLFFATFCLIIVLHSGLVSYGLRYPLESRLKPVIDPVQAEPYDAIVVLTSGTIPAGGLIPFPTLDVAMFRRLDEAWRLYSIRPKPIVVSGGHVNPFTPAANENQIARDYLIRW
Ga0207703_114280051	3300026035	Switchgrass Rhizosphere	MFVLKQFLKAFLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLESRYPPVIDPNKVGPFDAIVVLTAGSIPAEGLIPFPSVDEH
Ga0209875_10138721	3300027209	Groundwater Sand	MFVLKQFLKVLILPPLPWMLMLLAVLIFWRRRWARKLLFVTFCLIVVFHSGVFGYLLNHPLESRYP
Ga0210002_10437332	3300027617	Arabidopsis Thaliana Rhizosphere	MFVLKQFLKALFLQPTLWLMMLLAVLIFWHRSWARKLLLFTFLFVLALHSGLLNYGLRYPLESRYQPLLDPRRVGPYDAIVVLTGGIIPPEGLIPLPSIH
Ga0209971_10250553	3300027682	Arabidopsis Thaliana Rhizosphere	MFVLKQFLKALFLQPTLWLMMLLAVLIFWHRSWARKLLLFTFLFVLALHSGLLNYGLRYPLESRYQPLL
Ga0209465_101746191	3300027874	Tropical Forest Soil	MFVLKQFLKALILPPMPWMLMLLAVWIFWRRSWARKLLFVTFCLIVVLHSGGVGYLLTYPLESSYAPRIDPTKVEPYDAIVVLTGGSIPAEGLIPFPSI
Ga0210366_102004291	3300028420	Estuarine	MFVLKQFIKVLVLPPVPWLLLLLAVLIFWHRHWARKLLFFTFLIILALHSGPVNYALRYPLESSYPPLTDPGAAEPYDAVVVL
Ga0247828_110898231	3300028587	Soil	PWLMMLLAVLIFWQRRWARKLLLFTFVLITAVHSGLVGYGLRYPLESRYAPLLDPSALSYDAIVVLTGSMIPPEGLIPFSTID
Ga0268386_103218771	3300030619	Soil	MFVLKQFLKQLILPPVVWMLALIVVLVFWRRRWARKLLFITLCGSFILHSGLVGHWLRYPLESRYAPLVNPKNAGPYDAIVVLTSASIPAGGLLPF
Ga0299913_121642562	3300031229	Soil	MFVLKQFLKQLILPPVVWMLALIIVLIFWRRRWTRKLLFITLCGSFILHSGLVGHWLRYPLESRYAPLVNPKNAGPYDAIVV
Ga0307408_1008687292	3300031548	Rhizosphere	MFTLKQFLKALLLPPTPWLLLLLTVLIFWQRRWARKLLFLTFLLIVGLHCGPANYALRYQLESRYSPLLDPRKVGAYDAIVVLTSGSMQASGLIPFPSVDEHMFRRLDEAWRLYRI
Ga0307475_113096462	3300031754	Hardwood Forest Soil	MFVLKQFLKQFIMPPMPWLVLLLVVLIFWRRSWARKLLLVTFCLIVVLHSGFLAYWLSYPLESRYRPLVDPSMAE
Ga0310892_101347363	3300031858	Soil	MFVLKQFLKTLVLPPTPWLMMLLAVLIFWQRRWARKLLLFTFVLITAVHSGLVGYGLRYPLESRYAPLLDPSALSYDAIVVLTGSMIPPEGL
Ga0307406_107794332	3300031901	Rhizosphere	MFILKQFLKALLLPPTPWLLLLLTVLIFWQRRWARKLLFLTFLLIVGLHCGPANYALRYQLESRYSPLLDPRKVGAYDAIVVLTSGSMQASG
Ga0310901_100479691	3300031940	Soil	MFVLKQFLKTLVLPPTPWLMMLLAVLIFWQRRWARKLLLFTFVLITAVHSGLVGYGLRYPLESRYAPLLDPSALSYDAIVVLTGSMIPPEGLIPFSTIDEHMF
Ga0310884_104436141	3300031944	Soil	MFVLKQFLKTLVLPPTPWLMMLLAVLIFWQRRWARKLLLFTFVLITAVHSGLVGYGLRYPLESRYAPLLDPSALSYDAIVVLTGSM
Ga0307416_1007140902	3300032002	Rhizosphere	MFTLKQFLKALLLPPTPWLLLLLTVLIFWQRRWARKLLFLTFLLIVGLHCGPANYALRYQLESRYSPLLDPRKVGAYDAIVVLTSGSMQASGLIPFPSVDEHMFRRLDEAWRLYRIQPKPIIISGGHVNPFT
Ga0310899_101262301	3300032017	Soil	MFVLKQFLKTLVLPPTPWLMMLLAVLIFWQRRWARKLLLFTFVLITAVHSGLVGYGLRYPLESRYAPLLDPSALSY
Ga0310889_104271062	3300032179	Soil	MFVLKQFLKALLLPPMPWLILLLAVVVFWRRTWARKLLFLTVLLIIGLHSGLINYALRYPLELRYPPLIDPNKVGPFDAIVVLTAGSIAAEGLIPFPSVDEHMFRRLDEAWRLYKLRPKP
Ga0335080_102115064	3300032828	Soil	MFVLKQFLKQFILPPTPWIFLLLVVLIFWNRRWARKLLLFTFCLIVALHSGFLGHWLRYPLEARYPPLLDPAKAEPYDAIVV
Ga0335070_117214641	3300032829	Soil	MFVLKQFLKDLLLPPLPWLVMLIAVLVFWRRTCARKLLFATFLIVFTLHFGPLGYLLRYPLESSYPPLIDPSKVGSYDAIVVLTSGSI
Ga0247830_100641404	3300033551	Soil	MFVLKQFLKALVLPPTPWLLMLLAVLIFWHRRWARKLLLLTLVLITVLHSSLVGYALRYPLESRYAPLLDPSALSYDAIVVLTGSMIPPEGLIPFSTIDEHM
Ga0364926_035759_643_936	3300033812	Sediment	MFVLKQFLKQLFLPPVSWLLLLVFVLIFWRRRWARKLFFAAFCLIIVLHSGLASYGLRWPLEARYTPVIDPAQAEPYDAIVVLTSASIPAGGLIPFPT
Ga0364930_0088289_717_1058	3300033814	Sediment	MFVLKQFLKQLFLPPVSWLLLLVFVLIFWRRRWARKLFFAAFCLIIVLHSDLAGYGLRYPLESRYTPLIDPAQAEPYDAIVVLTSANIPAGGLIPFPTIDVAMFRRLDEAWRLY
Ga0326723_0483328_1_285	3300034090	Peat Soil	MFVLKQFLKALILPPMPWMLMLLAVLIFWHRRWARKLLFVTFCLIVVLHSGIFVYLLRYPLESHYPPLVDPTKVEPYDAIVVLTGGTIPAEGLIP
Ga0364942_0280469_2_208	3300034165	Sediment	MFTLKQFLKALILPPMPWLLMLSAVLIFWRRQWARKLMLVTFVLILLSHCSPVNYALLYPLESRYVALL
Ga0364932_0232620_336_698	3300034177	Sediment	MFVLKQFLKQLFLPPVSWLLLLVFVLIFWRRRWARKLFFAAFCLIIVLHSDLAGYGLRYPLESRYTPLIDPAQAEPYDAIVVLTSANIPAGGLIPFPTIDVAMFRRLDEAWRLYRISRKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072457

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences