Metagenome / Metatranscriptome Family F072414

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072414
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	51 residues
Representative Sequence	MKRLFLLSLGLFFFAVPSRAQSVDASIGYSYFRLGGSGGINQNGVSGSVAY
Number of Associated Samples	106
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.17 %
% of genes near scaffold ends (potentially truncated)	98.35 %
% of genes from short scaffolds (< 2000 bps)	87.60 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.736 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.488 % of family members)
Environment Ontology (ENVO)	Unclassified (26.446 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.289 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.46% β-sheet: 0.00% Coil/Unstructured: 83.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF13189	Cytidylate_kin2	6.61
PF01904	DUF72	5.79
PF00581	Rhodanese	4.96
PF02913	FAD-oxidase_C	4.13
PF08327	AHSA1	2.48
PF14534	DUF4440	2.48
PF04185	Phosphoesterase	2.48
PF02321	OEP	1.65
PF07589	PEP-CTERM	1.65
PF03544	TonB_C	1.65
PF13473	Cupredoxin_1	0.83
PF10502	Peptidase_S26	0.83
PF12697	Abhydrolase_6	0.83
PF04679	DNA_ligase_A_C	0.83
PF02735	Ku	0.83
PF13414	TPR_11	0.83
PF00005	ABC_tran	0.83
PF13840	ACT_7	0.83
PF02826	2-Hacid_dh_C	0.83
PF07045	DUF1330	0.83
PF01451	LMWPc	0.83
PF00440	TetR_N	0.83
PF08281	Sigma70_r4_2	0.83
PF01436	NHL	0.83
PF00149	Metallophos	0.83
PF00496	SBP_bac_5	0.83
PF00773	RNB	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	5.79
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	4.13
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	3.31
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	2.48
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.65
COG0557	Exoribonuclease R	Transcription [K]	0.83
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.83
COG4776	Exoribonuclease II	Transcription [K]	0.83
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.74 %
Unclassified	root	N/A	8.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.74 %
Unclassified	root	N/A	8.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.74 %
Unclassified	root	N/A	8.26 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	76.86 %
Unclassified	root	N/A	8.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.53 %
Unclassified	root	N/A	8.26 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Unclassified	root	N/A	8.26 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.13 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.65 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Unclassified	root	N/A	8.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.13 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.83 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.83 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Unclassified	root	N/A	8.26 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.65 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.83 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.83 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.83 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.70 %
Unclassified	root	N/A	8.26 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1.65 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.83 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.83 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.83 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1062273	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300002909\|JGI25388J43891_1076065	Not Available	516	Open in IMG/M
3300002911\|JGI25390J43892_10102628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300002914\|JGI25617J43924_10213210	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300002914\|JGI25617J43924_10266957	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300003351\|JGI26346J50198_1001518	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300004082\|Ga0062384_100184827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1215	Open in IMG/M
3300004082\|Ga0062384_100774874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300004091\|Ga0062387_100960499	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005179\|Ga0066684_10095522	All Organisms → cellular organisms → Bacteria → Acidobacteria	1810	Open in IMG/M
3300005332\|Ga0066388_101260881	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300005537\|Ga0070730_10881286	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300005545\|Ga0070695_100006384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	6968	Open in IMG/M
3300005555\|Ga0066692_10195942	All Organisms → cellular organisms → Bacteria → Acidobacteria	1262	Open in IMG/M
3300005557\|Ga0066704_10854871	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300005561\|Ga0066699_10015734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	3979	Open in IMG/M
3300005566\|Ga0066693_10243453	Not Available	711	Open in IMG/M
3300005576\|Ga0066708_11032098	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300006059\|Ga0075017_101298905	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300006354\|Ga0075021_10566367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300006755\|Ga0079222_10445722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300006755\|Ga0079222_10904895	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300006800\|Ga0066660_10749297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
3300006893\|Ga0073928_10827878	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300006954\|Ga0079219_12053019	Not Available	546	Open in IMG/M
3300007265\|Ga0099794_10043618	All Organisms → cellular organisms → Bacteria → Acidobacteria	2141	Open in IMG/M
3300007265\|Ga0099794_10397484	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300009088\|Ga0099830_10430960	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300009089\|Ga0099828_10122580	All Organisms → cellular organisms → Bacteria	2272	Open in IMG/M
3300009143\|Ga0099792_11016150	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300010043\|Ga0126380_10480419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300010048\|Ga0126373_10002537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13466	Open in IMG/M
3300010304\|Ga0134088_10306271	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300010321\|Ga0134067_10208141	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300010325\|Ga0134064_10210866	Not Available	701	Open in IMG/M
3300010337\|Ga0134062_10197468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300010360\|Ga0126372_11104288	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300010360\|Ga0126372_11517109	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300010360\|Ga0126372_13004224	Not Available	523	Open in IMG/M
3300010361\|Ga0126378_10258550	All Organisms → cellular organisms → Bacteria → Acidobacteria	1837	Open in IMG/M
3300010361\|Ga0126378_10619055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M
3300010361\|Ga0126378_12555369	Not Available	583	Open in IMG/M
3300010362\|Ga0126377_12081668	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300010362\|Ga0126377_12251925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300010366\|Ga0126379_10061449	All Organisms → cellular organisms → Bacteria → Proteobacteria	3153	Open in IMG/M
3300010880\|Ga0126350_12294912	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300011120\|Ga0150983_11452126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300011270\|Ga0137391_10200499	All Organisms → cellular organisms → Bacteria → Acidobacteria	1735	Open in IMG/M
3300011271\|Ga0137393_10313392	Not Available	1337	Open in IMG/M
3300011271\|Ga0137393_10617010	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012189\|Ga0137388_10798000	Not Available	875	Open in IMG/M
3300012202\|Ga0137363_11729074	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300012205\|Ga0137362_10809851	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300012349\|Ga0137387_10781629	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300012357\|Ga0137384_10699989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300012361\|Ga0137360_11423171	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300012361\|Ga0137360_11483678	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300012917\|Ga0137395_10714938	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300012927\|Ga0137416_10682283	All Organisms → cellular organisms → Bacteria → Acidobacteria	901	Open in IMG/M
3300012929\|Ga0137404_11966443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	545	Open in IMG/M
3300012930\|Ga0137407_11035673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300012948\|Ga0126375_11633785	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300012977\|Ga0134087_10236694	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300012977\|Ga0134087_10580626	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300015054\|Ga0137420_1470637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2356	Open in IMG/M
3300015245\|Ga0137409_11138898	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300016294\|Ga0182041_12114963	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300017822\|Ga0187802_10457225	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300017961\|Ga0187778_10155826	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300017974\|Ga0187777_10703284	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300017999\|Ga0187767_10352618	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300018060\|Ga0187765_10932030	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300018064\|Ga0187773_10291702	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300020199\|Ga0179592_10003423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	6703	Open in IMG/M
3300020579\|Ga0210407_10706022	Not Available	782	Open in IMG/M
3300020580\|Ga0210403_10418562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300020583\|Ga0210401_10173784	All Organisms → cellular organisms → Bacteria → Acidobacteria	2009	Open in IMG/M
3300021086\|Ga0179596_10204603	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300021088\|Ga0210404_10630504	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300021168\|Ga0210406_10875560	Not Available	677	Open in IMG/M
3300021170\|Ga0210400_10591815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300021171\|Ga0210405_10485973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300021180\|Ga0210396_10032464	All Organisms → cellular organisms → Bacteria	4828	Open in IMG/M
3300021180\|Ga0210396_10300769	All Organisms → cellular organisms → Bacteria → Acidobacteria	1420	Open in IMG/M
3300021401\|Ga0210393_10194465	All Organisms → cellular organisms → Bacteria → Acidobacteria	1638	Open in IMG/M
3300021402\|Ga0210385_10347341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300021404\|Ga0210389_10566519	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300021405\|Ga0210387_10021304	All Organisms → cellular organisms → Bacteria → Acidobacteria	5049	Open in IMG/M
3300021432\|Ga0210384_10091457	All Organisms → cellular organisms → Bacteria	2732	Open in IMG/M
3300021478\|Ga0210402_11687226	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300021559\|Ga0210409_11077049	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300024246\|Ga0247680_1053109	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300024246\|Ga0247680_1065859	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300024286\|Ga0247687_1064950	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300024288\|Ga0179589_10291046	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300024290\|Ga0247667_1100198	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300024323\|Ga0247666_1043387	All Organisms → cellular organisms → Bacteria → Acidobacteria	919	Open in IMG/M
3300025917\|Ga0207660_10978141	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300025921\|Ga0207652_10609089	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300026310\|Ga0209239_1144128	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300026318\|Ga0209471_1221359	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300026342\|Ga0209057_1166738	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300026538\|Ga0209056_10169803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1639	Open in IMG/M
3300026552\|Ga0209577_10004842	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	12619	Open in IMG/M
3300027497\|Ga0208199_1125996	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300027829\|Ga0209773_10331031	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300027862\|Ga0209701_10371304	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300027882\|Ga0209590_10116014	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300027884\|Ga0209275_10006354	All Organisms → cellular organisms → Bacteria → Acidobacteria	4947	Open in IMG/M
3300027911\|Ga0209698_10671152	All Organisms → cellular organisms → Bacteria → Acidobacteria	791	Open in IMG/M
3300029636\|Ga0222749_10317621	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300029636\|Ga0222749_10323071	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300030862\|Ga0265753_1066953	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300030991\|Ga0073994_10914169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300031231\|Ga0170824_111017117	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300031754\|Ga0307475_10391337	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300031769\|Ga0318526_10394620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300031820\|Ga0307473_10010214	All Organisms → cellular organisms → Bacteria	3367	Open in IMG/M
3300032066\|Ga0318514_10460151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300032205\|Ga0307472_100832680	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300032261\|Ga0306920_101094716	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Aquatic	Environmental → Aquatic	8.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.74%
Freshwater	Environmental → Aquatic → Freshwater	4.96%
Sediment	Environmental → Aquatic → Sediment	2.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.96%
Loam	Environmental → Terrestrial → Soil → Loam	4.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.48%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.05%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.13%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.13%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10622733	3300002557	Grasslands Soil	MRRLLLLSFGLFLFALPSYAQSVDASVSYSYFRLGGSGGINQNGISG
JGI25388J43891_10760651	3300002909	Grasslands Soil	MKKLIFLLLAFSVFVVPSRAQSVDASVSYSYFRLGGSGGINQNGVSGSVAYNPNRWLGIVGDFG
JGI25390J43892_101026282	3300002911	Grasslands Soil	MKKLMLLAVGIALFAIPSRAQSVDASVSYSYFRLGGSNGVNQNGISGSLAFNHLWFGIVGDFGV
JGI25617J43924_102132101	3300002914	Grasslands Soil	MKKLIIPFLALSVFAIPSRAQSVDASVSYSYFRFGGSGGLNQNGVS
JGI25617J43924_102669571	3300002914	Grasslands Soil	MKKLIFMFLALSAFAIPSRAQSVDVSAGYSYFRLGGSGGVNQNGVSGSVAYNFKSFDWL
JGI26346J50198_10015181	3300003351	Bog Forest Soil	MKRLLILSLGLFLFAVPSRAQSSADASIGYSYFHLGGGADLSQNGVSGSIAYN
Ga0062384_1001848273	3300004082	Bog Forest Soil	MKRLLLISLGLFLFAIPSRAQSSADASIGYSYFHLGGSADLSQNGIS
Ga0062384_1007748741	3300004082	Bog Forest Soil	MNAMKKLMLMGLGLFLFAIPSHAQSAFDASVGYSYFHLGGGADLNQNGISGSIAYKPIPFLGIV
Ga0062387_1009604991	3300004091	Bog Forest Soil	MKRLLLISLGLFLFAIPSRAQSSADASIGYSYFHLGGSADLSQNGISGSIAYKPIPFLGIVGD
Ga0066684_100955221	3300005179	Soil	MNKLIFLLLAFSVFGVPSRAQSVDASVSYSYLRLGGSGGINQ
Ga0066388_1012608812	3300005332	Tropical Forest Soil	MKKLLLLALGLFLFAIPSHAQSADASISYSYFRLGNSNGLNQNGVSGSV
Ga0070730_108812862	3300005537	Surface Soil	MKKLILFGLGLFLFAGSSRAQSVDVSGGYSYFRLGGSGGINQNGISGSVAYNPKRWLG
Ga0070695_1000063848	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLLLLSIVMVVFAVPSRAQSADASIGYSYFRLGGGGGLNQNGISGSVAY
Ga0066692_101959423	3300005555	Soil	MKRLLLLSFVLFLFALPSHAQSVDASVSYSYFRLGGSGGINQNGISGSVAYNP
Ga0066704_108548711	3300005557	Soil	MKKFILLGLGLFLLAGSSHAQSIDVSGGYSYFRLGGSGGLNQNGLSGSVAYNAKHW
Ga0066699_100157344	3300005561	Soil	MMKKLALLALGLSLFAIPSRAQSADVSLSYSYFRGNSGGLNQNGGSGSVGYYPSHFLGFVGD
Ga0066693_102434533	3300005566	Soil	MNKLIFLLLAFSVFGVPSRAQSVDASVSYSYLRLGGS
Ga0066708_110320982	3300005576	Soil	MRRLLLLSFGLFLFALPSRAQSVDASVGYSYFRLGAFGGINQNGVSGSVAYNPNRWLGIVGD
Ga0075017_1012989052	3300006059	Watersheds	MKRLFMLSLGLFLFAIPSRAQSSYDASVGYSYFHLGGGA
Ga0075021_105663672	3300006354	Watersheds	MKRLLFLGLVLLTFAVSSRAQSVDASISYSYLRLGGSGGINQNGVRGSIAYNPNRWLG
Ga0079222_104457222	3300006755	Agricultural Soil	MKKLVLLALGLVLFAIPSHAQSADASIGYSYFRLSNSNGLNENGVSGSVAVYHHWLGL
Ga0079222_109048951	3300006755	Agricultural Soil	MKKLIFLGFGLMFFAIPSRAQSVDASVSYSYFRLGGSNGINQNGVSGS
Ga0066660_107492971	3300006800	Soil	MKKLALLALGLGLFAIPSHAQSADASIGYSYFRLGNSNGLNENGVSGS
Ga0073928_108278781	3300006893	Iron-Sulfur Acid Spring	MKRLFLFSLGLFLFAIPSRAQSNVDASVGYSYFRLGGLTDLNQNGIS
Ga0079219_120530192	3300006954	Agricultural Soil	MKRLILLAAGFLFLAATSHAQSVDASIGYSYFRLG
Ga0099794_100436183	3300007265	Vadose Zone Soil	MKKLIFLLLAVSVFAIPSHAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYNLKSWSWLG
Ga0099794_103974843	3300007265	Vadose Zone Soil	MKKLIFMFLALSVFTIPSQAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYNLKSWSWLG
Ga0099830_104309603	3300009088	Vadose Zone Soil	MRRLLLLSFGLFLLPVSSHAQSVDASVGYSYFRLGGSGGINQNGV
Ga0099828_101225801	3300009089	Vadose Zone Soil	MKKLILLGLGLFLFAIPSRAQSVDVSGSYSYFRLGNSNGVNQNGASGSIAYNPNRWLG
Ga0099792_110161501	3300009143	Vadose Zone Soil	MRRLLLLSFGLFLFAVPSRAQSVDASVGYSYFRLGGSGGINQNGVS
Ga0126380_104804191	3300010043	Tropical Forest Soil	MKKFILLGLILGFFSISSRAQSVDASIGYSYFRHGGSGGINQNDGSGSVAYYHNTCLG
Ga0126373_100025371	3300010048	Tropical Forest Soil	MKKLILLAVGISLFAIPSYAQSVDASVSYSYFRLGGSNAVNQNGVSGSLAFNH
Ga0134088_103062711	3300010304	Grasslands Soil	MKKLIFLGFGLFLFAIPSRAQSVDVSGSYSYFRLGGSNGINQNGASGSIAYNPNRWLGLVGD
Ga0134067_102081411	3300010321	Grasslands Soil	MRRLLLLSFGLFLFALPSYAQSVDASVSYSYFRLGGSGGINQNGISGSVAYNPNRWLG
Ga0134064_102108662	3300010325	Grasslands Soil	MRRLLLLSFGLFLFALPSCAQSVDASVSYSYFRLG
Ga0134062_101974681	3300010337	Grasslands Soil	MKKLMLLAVGIALFAIPSRAQSVDASVSYSYFRLGGSNGVNQNGI
Ga0126372_111042882	3300010360	Tropical Forest Soil	MKKFILLGLALFFLAVSSRAQSADASIGYSYFRLGGSGGLNQNGVSGSVA
Ga0126372_115171091	3300010360	Tropical Forest Soil	MKKLILLAVGISLFAIPSHAQSVDASVSYSYFRLGGSNAVNQNGVSGSLAFNHLWLGIVGDF
Ga0126372_130042241	3300010360	Tropical Forest Soil	MKKLALLALGLVLFAIPAHAQADASIGYSYFRLSNSNGLNENGVSGSVAVYHHWLGFAGD
Ga0126378_102585501	3300010361	Tropical Forest Soil	MKKPMLLVLGISLFAIPSHAQSVDASVSYSYFRLGGSNGTNQNGVSGSLA
Ga0126378_106190551	3300010361	Tropical Forest Soil	MKKLMLLAVGISLFAIPSHAQSVDASLSYSYFRLGGSNGTNQNGVSGSLAFNH
Ga0126378_125553691	3300010361	Tropical Forest Soil	MKKLIMLGLGLFLFAIPSIAQSVDASIGYSYFHLGGSGG
Ga0126377_120816682	3300010362	Tropical Forest Soil	MKKLILLGLGLFFFATTSSAQSVDASIGYSYFRLGGSGGLNQNGVSGSLA
Ga0126377_122519252	3300010362	Tropical Forest Soil	MKRLILLALGLFFLAIPSRAQSIDASVSYSYFRLGDP
Ga0126379_100614498	3300010366	Tropical Forest Soil	MQALGKDSAPMKKLLLFTAGLLIFASASRAQSSGDVSIGYSYFRLGGSGGLNQNGISGSV
Ga0126350_122949121	3300010880	Boreal Forest Soil	MKRLLVVSLGLFLFAIPSRAQSVDASIGYSYFRLGNS
Ga0150983_114521262	3300011120	Forest Soil	MKKLIFSFLALSVFAIPSRAQSVDVSVSYSYFRSLGLNHNGVSG
Ga0137391_102004993	3300011270	Vadose Zone Soil	MKKLIILFLTLSVFAIPSRAQSVDASLSYSYFRLGGSNGLNQNGVSGSLAYNPNRW
Ga0137393_103133921	3300011271	Vadose Zone Soil	MKKLILLLLALSVFAIPSRAQSVDASLSYSYFRLGGSGGI
Ga0137393_106170103	3300011271	Vadose Zone Soil	MKKLIFMFLALSVFAIPSQAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYNLKSWSWLG
Ga0137388_107980003	3300012189	Vadose Zone Soil	MKKLIFMFLALSVFAIPSQAQSFDASVSYSYFRLGGSGGINQNGVSGSLA
Ga0137363_117290741	3300012202	Vadose Zone Soil	MKKLILLGFLLSFFAVSSRAQSVDASIGYSYFRLGGSGGLNSNGGSGSIAYFPNKWL
Ga0137362_108098511	3300012205	Vadose Zone Soil	MKKFIFLLLAFSVFVVPSRSQSVDASVSYSYLRLGGSGGINQN
Ga0137387_107816292	3300012349	Vadose Zone Soil	MRRLLLLSFGLFLFALPSRAQSADASVGYSYFRLGAFGGVNQNGVSGSVAYNPNR*
Ga0137384_106999891	3300012357	Vadose Zone Soil	MKKLILLALGLFLFAIPSRAQSVDVSGSYSYFRLGNSNGINQNGASGSVAFNPNR
Ga0137360_114231713	3300012361	Vadose Zone Soil	MRRLLLLSFGLFLFALPLRAQSVDASVGYSYFRLGGSGGINQNGV
Ga0137360_114836783	3300012361	Vadose Zone Soil	MKKLIFLLLAVSVFAIPSHAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYNL
Ga0137395_107149381	3300012917	Vadose Zone Soil	MKKLIIPFLALSVFAIPSRAQSVDASVSYSYFRFGGSGGLNQNGVSGSVAYNPNRWLGIV
Ga0137416_106822831	3300012927	Vadose Zone Soil	MRRLLLLSFGLFLIALPSRAQSVDASIGYSYFRLGGS
Ga0137404_119664431	3300012929	Vadose Zone Soil	MRRLLLLSFGLFLFALPSRAQSVDASVGYSYFRLGGSGGINQNGVS
Ga0137407_110356731	3300012930	Vadose Zone Soil	MKKLIILFLGMSVFAIPSRAQSVDASLSYSYFRLGGSNG
Ga0126375_116337852	3300012948	Tropical Forest Soil	MKKLILLGLGLSLLSISTRAQSVDASIGYSYFRLGGSGGLNANGVSGSVAYNPNKWL
Ga0134087_102366941	3300012977	Grasslands Soil	MRRLLLLSFGLFLFALPSYAQSVDASVSYSYFRLGGSGGINQNGISGSVAYNPN
Ga0134087_105806261	3300012977	Grasslands Soil	MKKLIFLLLAFSVFVVPSRAQSVDASLSYSYFRLGGSG
Ga0137420_14706375	3300015054	Vadose Zone Soil	MRRLLLLSFGCSSSPFRRAPSPVDASVGYSYFRLGGSGDINQNGVSGSVAYNPNRWLGIVGDFDG*
Ga0137409_111388981	3300015245	Vadose Zone Soil	MKRLLLLSIGLFLFPLSSRAQSSVDASVGYSYFRLGGSGGINQNGISGSVAYNPDNWL
Ga0182041_121149632	3300016294	Soil	MKKLLLFTAGLLFFATASRAQSSGDVSIGYSYFRLGGSGGLNQNGISGS
Ga0187802_104572251	3300017822	Freshwater Sediment	MKKLIFLGRVVGLGLGLMLFFSIPSRAQSVDASLSYSYFRLGNSGGTNQNG
Ga0187778_101558263	3300017961	Tropical Peatland	MKRLLFLSLGLTFGILLAPLPSRAQHSVDVSAGYSYFHLGGGGGLSQNGISGSIAYNPI
Ga0187777_107032842	3300017974	Tropical Peatland	MKRLLFLSLGLTFGILLAPLPSRAQHSVDVSAGYSYFHLGGGGGLSQNGISGSIAYNP
Ga0187767_103526182	3300017999	Tropical Peatland	MKRIILIGLALSFFAASSRAQSVDASLSYSYFRLGGSGGTNQNGV
Ga0187765_109320302	3300018060	Tropical Peatland	MKRLLLLGLGLCMFAIPSRAQSVDASVSYSYFRLGGSGGLNQNGVSGSLAYNPNRWLGIVGD
Ga0187773_102917023	3300018064	Tropical Peatland	MKKLLFLGLGLFLFAIPSRGQSVDASLSYSYFRLGGSGGINQNGVSGSVVYNPNRWLGIVGDV
Ga0179592_100034231	3300020199	Vadose Zone Soil	MKKLIFLLLAVSVFAIPSQAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYSLKS
Ga0210407_107060222	3300020579	Soil	MKKLIFLGFALLFWAASPSQAQSVDASLSYSYFRLGGSG
Ga0210403_104185621	3300020580	Soil	MKRLLLFSFGLFLFALPSRAQSVDASLSYSYFRLGTSGGFNQNGVSGSVAYNPIRWLGVVGDFG
Ga0210401_101737842	3300020583	Soil	MKKLIFFGFAVLLWALPSSAQSVDASLSYSYFRLGGSGGLNQN
Ga0179596_102046031	3300021086	Vadose Zone Soil	MRRLLLLSFGLLLFPLSSRAQSVDASIGYSYFRLGGSGSLNQNGVSGSLAYNPNKWPGIV
Ga0210404_106305042	3300021088	Soil	MKRLLLFSLALFLFAIPSHAQSSFDASAGYSYFNLGGGGGLS
Ga0210406_108755601	3300021168	Soil	MKRLLILSLGLFLFAVPSRAQSSYDASIGYSYFRLGNSNGINQ
Ga0210400_105918151	3300021170	Soil	MKRLLLFSFGLFLFALQSRAQSVDASLSYSYFRLGTSGGFNQNGVSGSVAYNPIRWLGVV
Ga0210405_104859731	3300021171	Soil	MKRLLLFSFGLFLFALQSRAQSVDASLSYSYFRLGTSGGFNQNGVSGSVAYN
Ga0210396_100324641	3300021180	Soil	MKRLLMLTLGLFLFAIPSRAQSSADASIGYSYFRLGGSGGINQNGV
Ga0210396_103007691	3300021180	Soil	MKRLLLLGSLGLFLFALPSRAQSSYDASVGYSYFHLGGGADLNQNGISGSIAYKPLPLLGIV
Ga0210393_101944651	3300021401	Soil	MKRLLLLGFGLFLFAIPSRAQSSADASVGYSYFHLGGGADLSQNGVSGSIAYKPIPFLGI
Ga0210385_103473411	3300021402	Soil	MKRLLLLGFGLFLFAIPSRAQSSADASVGYSYFYLGGGADLSQNGISGSLA
Ga0210389_105665192	3300021404	Soil	MKRLLLLASAMFLFALPSHAQSVDASVGYSYFRLGGSDGLNQNGVSGSIAY
Ga0210387_100213041	3300021405	Soil	MKRLFLLGLGLFIFAVPSHAQSSVDASVGYSYFRLGGSGGVNQNGISG
Ga0210384_100914571	3300021432	Soil	MKRLLFLSLGLLLLASPSRAQSSADASIGYSYFRLGGSGGINQNGVSGSLAYNPIP
Ga0210402_116872261	3300021478	Soil	MKRLFLLSLGLFFFAVPSRAQSVDASIGYSYFRLGGSGGINQNGVSGSVAY
Ga0210409_110770492	3300021559	Soil	MKRLLFLSLGLLLLASPSRAQSSADASIGYSYFRLGGSGGINQNGVSGS
Ga0247680_10531091	3300024246	Soil	MKRLLLLSIVMVVFAVPSRAQSADASIGYSYFRLGGGGGLNQNGISGSVAYKPIPF
Ga0247680_10658591	3300024246	Soil	MKKFILLGLGLFLFAVSSRAQSADASIGYSYFRLGGSGGLNQNGVSGSVAYNPNRW
Ga0247687_10649502	3300024286	Soil	MKKLILFGLGLFLFAGSSRAQSVDVSGGYSYFRLGGSGGINQN
Ga0179589_102910461	3300024288	Vadose Zone Soil	MKKLIFLFLALAVFAIPSRAQSVDASLSYSYFRLGGSGGLNQNGVSGSVAYNLHDWLGIVGDFGG
Ga0247667_11001982	3300024290	Soil	MKKLILFGLGLFLFAGSSRAQSVDVSGGYSYFRLGGSGGLNQNGISGSVAYNPIRWLGVV
Ga0247666_10433871	3300024323	Soil	MKKIILFGLGLFLFAGSSRAQSVDVSGGYSYFRLGGSGGINQNGISGSVAYNPKRWLGAV
Ga0207660_109781411	3300025917	Corn Rhizosphere	MKRLLLLSIVMVVFAVPSRAQSADASIGYSYFRLGGGGGLNQ
Ga0207652_106090891	3300025921	Corn Rhizosphere	MKRLLLLSIVMVVFAVPSRAQSADASIGYSYFRLGGGGGLN
Ga0209239_11441281	3300026310	Grasslands Soil	MKCLLLLSFGLLLYPLSSRAQSSLDASVGYSYFRLGGSGGINQNGISGSVAYNPSNWLG
Ga0209471_12213592	3300026318	Soil	MKRLLLLSFVLFLFALPSHAQSVDASVSYSYFRLGGSGGINQNGISGSVAYNPNRWLGAV
Ga0209057_11667382	3300026342	Soil	MKRLLLLSFVLFLFALPSHAQSVDASVSYSYFRLGGSGGINHNGISGS
Ga0209056_101698034	3300026538	Soil	MKRLLLLSSGLLLFALPTRAQSVDASLSYSYFRLGGSGGINQNGISGSVAYN
Ga0209577_100048421	3300026552	Soil	MKKLIFLLLAFSVFVVPSRAQSVDASVSYSYLRLGGSGGI
Ga0208199_11259961	3300027497	Peatlands Soil	MKRLIFLFLVLSVFAIPSRAQSVDASLSYSYFRLGGSGGVNQNGISGSIAYNPNNWL
Ga0209773_103310312	3300027829	Bog Forest Soil	MKRLLLVSFALFLFAIPSRAQSSADASIGYSYFHLGGGADL
Ga0209701_103713043	3300027862	Vadose Zone Soil	MKKLIFMFLALSVFAIPSQAQSFDASVSYSYFRLGGSGGINQNGVSGSLAYN
Ga0209590_101160141	3300027882	Vadose Zone Soil	MRRLLLFSFGLFLFALPSRAQSVDASVGYSYLRLGGSGGINQNGVSVSVAYN
Ga0209275_100063541	3300027884	Soil	MKRLFLLGLGLFIFAVPSHAQSSVDASVGYSYFRL
Ga0209698_106711522	3300027911	Watersheds	MKKLIFLFLAMAVFAIPSRAQSVDASVSYSYFRLGGSGGLNQNGVS
Ga0222749_103176211	3300029636	Soil	MKRLLLLSLGLFLLAVPSRAQSSADASIGYSYFHLGGGADLSQNGVSGS
Ga0222749_103230711	3300029636	Soil	MKKLIILLLALSVFAIPSRAQSFDASVGYSYFRLGGSGGINQNG
Ga0265753_10669531	3300030862	Soil	MKRLLLVSFALFLFAIPSRAQSSADASFGYSYFRL
Ga0073994_109141692	3300030991	Soil	MKKLVFLFLALAVFAIPSRAQSVDASLGYSYFRLGGSGGLNQNG
Ga0170824_1110171171	3300031231	Forest Soil	MKKLIFLLLALSVFAIPSRAQSVDASLSYSYFRLGGSGGINQN
Ga0307475_103913373	3300031754	Hardwood Forest Soil	MKKLIFLFLALAVFAIPSRAQSVDASLGYSYFRLGGNGGLNQNGVSGSVAYNLHDW
Ga0318526_103946202	3300031769	Soil	MKKLMLLAVGISLFAVPSHAQSVDASLSYSYFRLG
Ga0307473_100102141	3300031820	Hardwood Forest Soil	MKKLMLLAVGIALFAIPSRAQSVDASVSYSYFRLGGSNGVNQNGISGS
Ga0318514_104601511	3300032066	Soil	MKKLMLLAVGISLFAVPSHAQSVDASLSYSYFRLGGSNGTNQNGVSGSLAFNHLWLGI
Ga0307472_1008326801	3300032205	Hardwood Forest Soil	MKKLILLGLGLVFFAIPSRAQSVDASIGYSYFRLGGSGG
Ga0306920_1010947161	3300032261	Soil	MKNLILLGLGLFLVAIPARAQSVDVSVSYSYFRLGNSNGINQNGGSGSLAYNFNRWLGFAGDFGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072414

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences