Metagenome / Metatranscriptome Family F072398

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072398
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	97 residues
Representative Sequence	DKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG
Number of Associated Samples	100
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.79 %
% of genes near scaffold ends (potentially truncated)	93.39 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (11.570 % of family members)
Environment Ontology (ENVO)	Unclassified (43.802 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.942 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.60% β-sheet: 25.60% Coil/Unstructured: 52.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01841	Transglut_core	28.93
PF00425	Chorismate_bind	2.48
PF07043	DUF1328	1.65
PF02885	Glycos_trans_3N	0.83
PF00117	GATase	0.83
PF00375	SDF	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	1.65

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	99.17 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	88.43 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	83.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	83.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	83.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	83.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	83.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.96 %
Rhizobium freirei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10900987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	550	Open in IMG/M
3300002070\|JGI24750J21931_1091399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300002128\|JGI24036J26619_10108787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M
3300002239\|JGI24034J26672_10111395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	523	Open in IMG/M
3300003324\|soilH2_10241194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1023	Open in IMG/M
3300004156\|Ga0062589_101904524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	600	Open in IMG/M
3300004463\|Ga0063356_102850830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	745	Open in IMG/M
3300005093\|Ga0062594_100186655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1423	Open in IMG/M
3300005093\|Ga0062594_103279889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	508	Open in IMG/M
3300005180\|Ga0066685_11111837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300005337\|Ga0070682_101402529	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300005339\|Ga0070660_100814339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	786	Open in IMG/M
3300005344\|Ga0070661_100762884	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300005354\|Ga0070675_100034815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4089	Open in IMG/M
3300005354\|Ga0070675_100738012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	898	Open in IMG/M
3300005435\|Ga0070714_102188563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300005440\|Ga0070705_100718789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	786	Open in IMG/M
3300005455\|Ga0070663_100732413	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005457\|Ga0070662_100736193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	836	Open in IMG/M
3300005457\|Ga0070662_101564381	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005458\|Ga0070681_10824948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	845	Open in IMG/M
3300005459\|Ga0068867_101616538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	606	Open in IMG/M
3300005466\|Ga0070685_10378908	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300005468\|Ga0070707_100961513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	819	Open in IMG/M
3300005530\|Ga0070679_102169639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	505	Open in IMG/M
3300005534\|Ga0070735_10057952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2536	Open in IMG/M
3300005535\|Ga0070684_102002984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	546	Open in IMG/M
3300005539\|Ga0068853_101391121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	678	Open in IMG/M
3300005547\|Ga0070693_101175110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	588	Open in IMG/M
3300005547\|Ga0070693_101215023	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300005564\|Ga0070664_101770236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	586	Open in IMG/M
3300005577\|Ga0068857_102226809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300005614\|Ga0068856_100778699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	977	Open in IMG/M
3300005616\|Ga0068852_100098961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2628	Open in IMG/M
3300005616\|Ga0068852_101094299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	817	Open in IMG/M
3300005616\|Ga0068852_101443965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	710	Open in IMG/M
3300005617\|Ga0068859_101377180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	778	Open in IMG/M
3300005618\|Ga0068864_101883219	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300006046\|Ga0066652_101952535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	525	Open in IMG/M
3300006358\|Ga0068871_100235354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1591	Open in IMG/M
3300006755\|Ga0079222_10023295	All Organisms → cellular organisms → Bacteria → Proteobacteria	2526	Open in IMG/M
3300006806\|Ga0079220_10148273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1290	Open in IMG/M
3300006806\|Ga0079220_10819721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	707	Open in IMG/M
3300007076\|Ga0075435_100708844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	875	Open in IMG/M
3300009156\|Ga0111538_10926817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1102	Open in IMG/M
3300009840\|Ga0126313_10757714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	788	Open in IMG/M
3300010152\|Ga0126318_11192534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	681	Open in IMG/M
3300010373\|Ga0134128_10935854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	959	Open in IMG/M
3300010396\|Ga0134126_10285412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1942	Open in IMG/M
3300010396\|Ga0134126_12738751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	535	Open in IMG/M
3300010399\|Ga0134127_12812899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	566	Open in IMG/M
3300011119\|Ga0105246_10026715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3776	Open in IMG/M
3300012212\|Ga0150985_107702315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	617	Open in IMG/M
3300012212\|Ga0150985_118905828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	535	Open in IMG/M
3300012469\|Ga0150984_114536376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	528	Open in IMG/M
3300012494\|Ga0157341_1051402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	505	Open in IMG/M
3300012510\|Ga0157316_1008011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	914	Open in IMG/M
3300012519\|Ga0157352_1030792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	710	Open in IMG/M
3300012885\|Ga0157287_1113180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	518	Open in IMG/M
3300012898\|Ga0157293_10232418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	574	Open in IMG/M
3300012907\|Ga0157283_10171289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	659	Open in IMG/M
3300012911\|Ga0157301_10124135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	790	Open in IMG/M
3300012916\|Ga0157310_10446631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	550	Open in IMG/M
3300012961\|Ga0164302_10145437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1388	Open in IMG/M
3300012984\|Ga0164309_11745977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	534	Open in IMG/M
3300012985\|Ga0164308_11133109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	703	Open in IMG/M
3300012988\|Ga0164306_11623111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	558	Open in IMG/M
3300012989\|Ga0164305_12000837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	529	Open in IMG/M
3300013102\|Ga0157371_10060694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2681	Open in IMG/M
3300013104\|Ga0157370_10196375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1873	Open in IMG/M
3300013105\|Ga0157369_10417245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1391	Open in IMG/M
3300013105\|Ga0157369_11198860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	775	Open in IMG/M
3300013296\|Ga0157374_11333170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	740	Open in IMG/M
3300013307\|Ga0157372_10471029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1464	Open in IMG/M
3300014497\|Ga0182008_10229530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	952	Open in IMG/M
3300014497\|Ga0182008_10634718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	603	Open in IMG/M
3300014745\|Ga0157377_11214278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	584	Open in IMG/M
3300014745\|Ga0157377_11646850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300015371\|Ga0132258_10923185	All Organisms → cellular organisms → Bacteria → Proteobacteria	2204	Open in IMG/M
3300021445\|Ga0182009_10739341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	535	Open in IMG/M
3300025321\|Ga0207656_10450640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	650	Open in IMG/M
3300025901\|Ga0207688_10220018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1144	Open in IMG/M
3300025903\|Ga0207680_11336159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	509	Open in IMG/M
3300025912\|Ga0207707_10569875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	961	Open in IMG/M
3300025912\|Ga0207707_10983840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	693	Open in IMG/M
3300025914\|Ga0207671_11549775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	511	Open in IMG/M
3300025919\|Ga0207657_10569595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	885	Open in IMG/M
3300025922\|Ga0207646_10814318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	831	Open in IMG/M
3300025926\|Ga0207659_11282221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	629	Open in IMG/M
3300025931\|Ga0207644_10440727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1069	Open in IMG/M
3300025931\|Ga0207644_11150318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300025932\|Ga0207690_11468401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	570	Open in IMG/M
3300025941\|Ga0207711_10382331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1306	Open in IMG/M
3300025945\|Ga0207679_12056797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300025960\|Ga0207651_10794755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	838	Open in IMG/M
3300025961\|Ga0207712_10432039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1113	Open in IMG/M
3300025981\|Ga0207640_10231001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1423	Open in IMG/M
3300026023\|Ga0207677_11671168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	590	Open in IMG/M
3300026041\|Ga0207639_11133646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	734	Open in IMG/M
3300026041\|Ga0207639_11312168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	679	Open in IMG/M
3300026041\|Ga0207639_12015777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300026041\|Ga0207639_12225940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	509	Open in IMG/M
3300026078\|Ga0207702_10087487	All Organisms → cellular organisms → Bacteria → Proteobacteria	2720	Open in IMG/M
3300026078\|Ga0207702_10971251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	842	Open in IMG/M
3300026095\|Ga0207676_10458915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1203	Open in IMG/M
3300026118\|Ga0207675_102165984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	572	Open in IMG/M
3300027360\|Ga0209969_1018183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1038	Open in IMG/M
3300027775\|Ga0209177_10140328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	810	Open in IMG/M
3300027787\|Ga0209074_10010692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2266	Open in IMG/M
3300027876\|Ga0209974_10245866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	672	Open in IMG/M
3300027986\|Ga0209168_10172862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1089	Open in IMG/M
3300028587\|Ga0247828_11172134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300031538\|Ga0310888_10018535	All Organisms → cellular organisms → Bacteria → Proteobacteria	2865	Open in IMG/M
3300031716\|Ga0310813_10195621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1655	Open in IMG/M
3300031716\|Ga0310813_10609787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	966	Open in IMG/M
3300031938\|Ga0308175_100151368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2225	Open in IMG/M
3300031939\|Ga0308174_10491899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1002	Open in IMG/M
3300031939\|Ga0308174_11895447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	513	Open in IMG/M
3300031996\|Ga0308176_10487821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1248	Open in IMG/M
3300031996\|Ga0308176_12554865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	544	Open in IMG/M
3300032074\|Ga0308173_11846754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.72%
Environmental	Environmental	46.28%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.72%
Terrestrial	Environmental → Terrestrial	45.45%
Aquatic	Environmental → Aquatic	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.62%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	23.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.22%
Loam	Environmental → Terrestrial → Soil → Loam	10.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	23.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.44%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.13%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.48%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_109009871	3300000891	Soil	DKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
JGI24750J21931_10913992	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	RQACAPMGTLHSIVVTVNAHKRRRTWYXVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
JGI24036J26619_101087871	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	PRTSRERVPPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
JGI24034J26672_101113951	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	PPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
soilH2_102411942	3300003324	Sugarcane Root And Bulk Soil	RARERSVPPLDKARARQACAPMGALHSIVVTIDTRKRRRTFYIVDPDRAMAPQYAAAGLDLTPGCKVLVDAEVMRPIAILDFDPAVSAGTDKSPAGFNPYFDLPPS*
Ga0062589_1019045241	3300004156	Soil	PPLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAAQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLAAG*
Ga0063356_1028508302	3300004463	Arabidopsis Thaliana Rhizosphere	TPAPLDKARARQACAPMGVLHSIVVTVNAHKRRRTWYVVDPDPSLSAQYAAAGLELVPGCKVLVDAEAMRPVALLDFDPVESAQGTAPMPLGFNPYFDLPAG*
Ga0062594_1001866552	3300005093	Soil	RQACAPMGTLHSIVVTVNPNKRRRTWYIIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGGDPLPHGFNPYFDLSAG*
Ga0062594_1032798891	3300005093	Soil	RTSRERVPPPLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVIEPDFALAAQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAPGSDPLPHGFNPYFDLAAG*
Ga0066685_111118372	3300005180	Soil	PPLDKARARQACSPMGTLHSIVMTIDIRKRRRTWYIIDPDRALSAQYAAAGLDLIPGCKVLVDAEAMRPVALLDFDPAVSAQDNSPMPQGFNPYFDLPAG*
Ga0070682_1014025291	3300005337	Corn Rhizosphere	GRRERVPPPLDKSRARKACAPMGTLHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAEVMRPTAILDFDPVGSEEGRSAAGFNPYFDLPPS*
Ga0070660_1008143391	3300005339	Corn Rhizosphere	LPRTSRERVPPPLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLAAG*
Ga0070661_1007628841	3300005344	Corn Rhizosphere	PLDKARARQACAPMGALVSIVVTVDAHKRRRTWYILDPDPAASAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0070675_1000348157	3300005354	Miscanthus Rhizosphere	ARQACAPMGTLHSIVVTVNPNKRRRTWYIIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGGDPLPHGFNPYFDLSAG*
Ga0070675_1007380122	3300005354	Miscanthus Rhizosphere	PLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAAQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLAAG*
Ga0070714_1021885631	3300005435	Agricultural Soil	ARARQACLPMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAAGLDLTPGCKVLVDAEAMRPIALLDFDPAVSAEGASPMPHGFNPYFDLPAG*
Ga0070705_1007187891	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DKARARQACAPMGALHSIVITVDRRKRRRTWYIVDPDPAVAPQYSAAGLDLTPGCKVLVDAEVMRPVALVDFDPAVSAQDASPMPHGFNPYFDLPAG*
Ga0070663_1007324132	3300005455	Corn Rhizosphere	PPPLDKARARQACAPMGALHSIVVTIDAHKRRRTWYVIDPDPAVGAQYAALGLDLIPGCKVLVDAEVMRPTAILDFDPVGSEEGRSAAGFNPYFDLPPS*
Ga0070662_1007361932	3300005457	Corn Rhizosphere	GRVPPPLDKARARQACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG*
Ga0070662_1015643811	3300005457	Corn Rhizosphere	RVPPPLDKARARQACAPMGALHSIVVTVDAHKRRRTWYIIDPDPAVGAQYAALGLDLIPGCKVLVDAEVMRPIAVLDFDPAVSAGTDKSPAGFNPYFDLPPS*
Ga0070681_108249481	3300005458	Corn Rhizosphere	MRERAKMLDDALLPTRGRTPPPLDKARARQACAPMGALHSIVVTVDVKKRRRTWYIIDPDPAVASQYSAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSALDCAPMPHGFNPYFDLPAG
Ga0068867_1016165382	3300005459	Miscanthus Rhizosphere	PPLDKARARQACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVEPLPHGFNPYFDLPAG*
Ga0070685_103789081	3300005466	Switchgrass Rhizosphere	RAPPPLDKARARQACAPMGALVSIVVTVDAHKRRRTWYILDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0070707_1009615132	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PPPLDKARARQACLPMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAVGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAQGASPMPHGFNPYFDLPAG*
Ga0070679_1021696391	3300005530	Corn Rhizosphere	CAPMGALHSIVVTIDAHKRRRTWYVLDPDPAVGAQYAALGLDLIPGCKVLVDAEVMRPVAVLDFDASVSAGDERSPLGFNPYFDLPPS*
Ga0070735_100579521	3300005534	Surface Soil	RQACLPMGTLLSIAITVDARKRRRTWYIVDPDPAVSAQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAEDCAPMPHGFNPYYDLPAG*
Ga0070684_1020029841	3300005535	Corn Rhizosphere	MGALHSIVVTVDTRKRRRTFYIVDPDPAMATQYAAAGLDLIPGCKVLVDAEVMRPVALIDFDPAVSAEDCAPMPQGFNPYFDLPAG*
Ga0068853_1013911212	3300005539	Corn Rhizosphere	VNPNKRRRTWYVIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGDDPLPHGFNPYFDLSAG*
Ga0070693_1011751101	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	APMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLAAG*
Ga0070693_1012150232	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	HAQGRRERVPPPLDKSRARKACAPMGTLHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAEVMRPTAILDFDPVGSEEGRSAAGFNPYFDLPPS*
Ga0070664_1017702362	3300005564	Corn Rhizosphere	SIVVTVNAHKRRRTWYVVDPDPSLAVHYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVDPLPHGFNPYFDLPAG*
Ga0068857_1022268092	3300005577	Corn Rhizosphere	RARQACAPMGTLHSIVVTVNARKRRRTWYVVDPDFAVAAQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQGVDPMPHGFNPYFDLPAG*
Ga0068856_1007786992	3300005614	Corn Rhizosphere	RVPPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIADPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDNDPMPHGFNPYFDLPAG*
Ga0068852_1000989616	3300005616	Corn Rhizosphere	VVTVNPNKRRRTWYIIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGGDPLPHGFNPYFDLSAG*
Ga0068852_1010942992	3300005616	Corn Rhizosphere	MRERAKMLEDALLPTRGRTPPPLDKARARQACAPMGALHSIVVTVDVKKRRRTWYIIDPDPAVASQYSAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSALDCAPMPHGFNPYFDLPAG
Ga0068852_1014439651	3300005616	Corn Rhizosphere	PLDKARARQACAPMGALHSIVITVDKRKRRRTWYIVDPDPAVAPQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAQDASPMPHGFNPYFDLPAG*
Ga0068859_1013771802	3300005617	Switchgrass Rhizosphere	LHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG*
Ga0068864_1018832191	3300005618	Switchgrass Rhizosphere	DKARARQACAPMGALVSIVVTVDAHKRRRTWYVLDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0066652_1019525352	3300006046	Soil	QACAPMGALHSIVVTVNAHKRRRTWYVVDPDPAMARQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG*
Ga0068871_1002353542	3300006358	Miscanthus Rhizosphere	MGALHSIVVTVNAQKRRRTWYVVDPDPALAVQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG*
Ga0079222_100232955	3300006755	Agricultural Soil	PVRTRGRTPPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG*
Ga0079220_101482732	3300006806	Agricultural Soil	RARQACAPMGTLHSIVVTVNARKRRRTWYIIEPDRAMSAQYAAAGFELTPGCKVLVDAEAMRPVALVDFDPAVSAQDDSPMPHGFNPYFDLPAG*
Ga0079220_108197211	3300006806	Agricultural Soil	PRTSRGRTPPPLDKARARQACAPMGTLHSIVVTVDTRKRRRTWYVIEPDLAVAGQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG*
Ga0075435_1007088442	3300007076	Populus Rhizosphere	VVTVNAHKRRRTWYVVDPDMAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDNDPMPHGFNPYFDLPAG*
Ga0111538_109268172	3300009156	Populus Rhizosphere	PRTSRERVPPPLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAAQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLSAG*
Ga0126313_107577142	3300009840	Serpentine Soil	LSIVVTLDAHKRRRTWYILDPDPAVGAQYAALGLELVPGCKVLVDADVMRPIAILDFDPAVSAGTDPSPHGFNPYFDLPPS*
Ga0126318_111925341	3300010152	Soil	ISRHGRTPPPLDKARARQACAPMGALHSIVVTVDVKKLRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG*
Ga0134128_109358542	3300010373	Terrestrial Soil	LHSIVTTVDQRKRRRTWYIVDPDPAVAPQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAQDASPMPHGFNPYFDLPAG*
Ga0134126_102854121	3300010396	Terrestrial Soil	PMGTLHSIVVTVNPRKRRRTWYVVDPDPAMAPQYAAVGLDLTPGCKVLVDAEAMRPVALLDFDPAVNSQGWGSMPNGFNPYFDLPAG*
Ga0134126_127387511	3300010396	Terrestrial Soil	KARARQACAPMGALHSIVITVDRRKRRRTWYIVDPDPAVAPQYSAAGLDLTPGCKVLVDAEVMRPVALVDFDPAVSAQDASPMPHGFNPYFDLPAG*
Ga0134127_128128992	3300010399	Terrestrial Soil	PPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0105246_100267157	3300011119	Miscanthus Rhizosphere	ERVPPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0150985_1077023151	3300012212	Avena Fatua Rhizosphere	LVSIVVTVDAHKRRRTWYVLDPDPAVSAQYAALGLDLLPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0150985_1189058282	3300012212	Avena Fatua Rhizosphere	MGTLHSIVVTVNAQKRRRTWYIVDPDPSLALQYAAAGLDLTPGCKVLVDAEVMRPMALLDFDPAVSAQDADPMPHGFNPYFDLPAG*
Ga0150984_1145363762	3300012469	Avena Fatua Rhizosphere	ARARQACSPMGTLHSIVMTVDAHKRRRTWYILDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPSPHGFNPYFDLPPS*
Ga0157341_10514021	3300012494	Arabidopsis Rhizosphere	ACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTACAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDAVTALDTEPLPHGFNPYFDLPAG*
Ga0157316_10080112	3300012510	Arabidopsis Rhizosphere	ACAPMGTLHSIVMTVDVRKRRRTWYIVDPDPAVAAQYSAAGLDLTPGCKVLVDAELMRPVALLDFDAVTALDTEPLPHGFNPYFDLPAG*
Ga0157352_10307922	3300012519	Unplanted Soil	MKMAARQACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTACAPKYAAAGLDLTPGCKVLVDAELMRPVALLDFDAVTALDTEPLPHGFNPYFDLPAG*
Ga0157287_11131802	3300012885	Soil	ERVPPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0157293_102324181	3300012898	Soil	PLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0157283_101712891	3300012907	Soil	LDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0157301_101241352	3300012911	Soil	HSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0157310_104466312	3300012916	Soil	RARRANACRRRSTRRARQACAPMGTLHSIVVTVNAHKRRRTWYIVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0164302_101454372	3300012961	Soil	RERVPPPLDKARARQACAPMGTLHSIVVTGNAHKRRRTWYVVDPDMAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG*
Ga0164309_117459771	3300012984	Soil	RHRAPPPLDKARARQACAPMGALVSIVVTVDAHKRRRTWYVLDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0164308_111331092	3300012985	Soil	CAPMGTLHSIVVTVNAHKRRRTWYVVDPDTACAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDAVTALDTEPLPHGFNPYFDLPAG*
Ga0164306_116231111	3300012988	Soil	PPLDKARARQACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG*
Ga0164305_120008372	3300012989	Soil	ARQACAPMGALVSIVVTVDAHKRRRTWYILDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0157371_100606941	3300013102	Corn Rhizosphere	KAMIDDTPVRTRGRTPPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG*
Ga0157370_101963751	3300013104	Corn Rhizosphere	QACAPMGALHSIVVTVDTRKRRRTFYIVDPDPAMATQYAAAGLDLIPGCKVLVDAEVMRPVALIDFDPAVSAEDCAPMPQGFNPYFDLPAG*
Ga0157369_104172451	3300013105	Corn Rhizosphere	PMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAAGLDLTPGCKVLVDAEAMRPIALVDFDPAVSAEDASPMPHGFNPYFDLPAG*
Ga0157369_111988601	3300013105	Corn Rhizosphere	RRRTPPPLDKARARQACAPMGALHSIVITVDQRKRRRTWYIVDPDPAVAPQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAQDASPMPHGFNPYFDLPAG*
Ga0157374_113331701	3300013296	Miscanthus Rhizosphere	MGTLHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAEVMRPTAILDFDPVGSEEGRSAAGFNPYFDLPPS*
Ga0157372_104710291	3300013307	Corn Rhizosphere	HSIVVTVNAHKRRRTWYVVDPDPSLAVHYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVDPLPHGFNPYFDLPAG*
Ga0182008_102295302	3300014497	Rhizosphere	DKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG*
Ga0182008_106347181	3300014497	Rhizosphere	KARARQACAPMGALHSIVVTVDTRKRRRTFYIVDPDPAMATQYAAAGLDLIPGCKVLVDAEVMRPVALIDFDPAVSAEDCAPMPQGFNPYFDLPAG*
Ga0157377_112142781	3300014745	Miscanthus Rhizosphere	IVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG*
Ga0157377_116468501	3300014745	Miscanthus Rhizosphere	APPKGRQRVPPPLDKARARQACAPMGALHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAELMRPTAILDFDPACSSGDARSAAGFNPYFDLPPS*
Ga0132258_109231855	3300015371	Arabidopsis Rhizosphere	RQACAPMGALVSIVVTVDAHKRRRTWYILDPDPAVGAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS*
Ga0182009_107393411	3300021445	Soil	HSIVVTVNAHKRRRTWYVVDPDVELAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG
Ga0207656_104506401	3300025321	Corn Rhizosphere	ACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG
Ga0207688_102200181	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG
Ga0207680_113361591	3300025903	Switchgrass Rhizosphere	RGRTPPPLDKTRARQACAAMGSLHSIVVTVNAHKRRRTWYVIDPDRALAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVAAQINDPMPHGFNPYFDLPAG
Ga0207707_105698751	3300025912	Corn Rhizosphere	PPPLDKARARQACLPMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAAGLDLTPGCKVLVDAEAMRPIALVDFDPAVSAQGASPMPHGFNPYFDLPAG
Ga0207707_109838401	3300025912	Corn Rhizosphere	MGTLHSIVVTVDARKRRRTWYIIDPDPAVGAQYSAAGLDLTPGCKVLVDAEVMRPVALVDFDPAVSAEDCSPMPHGFNPY
Ga0207671_115497752	3300025914	Corn Rhizosphere	KAMIDDTPVRTRGRTPPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG
Ga0207657_105695952	3300025919	Corn Rhizosphere	MGALHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAELMRPTAILDFDPACSSGDARSAAGFNPYFDLPPS
Ga0207646_108143181	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RQACLPMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAVGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAQGASPMPHGFNPYFDLPAG
Ga0207659_112822211	3300025926	Miscanthus Rhizosphere	ARQACAPMGTLHSIVVTVNPNKRRRTWYIIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGGDPLPHGFNPYFDLSAG
Ga0207644_104407271	3300025931	Switchgrass Rhizosphere	SIVVTVNAQKRRRTWYVVDPDPALAVQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG
Ga0207644_111503182	3300025931	Switchgrass Rhizosphere	MGTLHSIVVTVNAHKRRRTWYVVDPDPSLAAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG
Ga0207690_114684012	3300025932	Corn Rhizosphere	PPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG
Ga0207711_103823312	3300025941	Switchgrass Rhizosphere	MGALHSIVVTVNAQKRRRTWYVVDPDPALAVQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG
Ga0207679_120567971	3300025945	Corn Rhizosphere	PLDKARARQACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG
Ga0207651_107947551	3300025960	Switchgrass Rhizosphere	TLHSIVVTVNAHKRRRTWYVVDPDMAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDNDPMPHGFNPYFDLPAG
Ga0207712_104320391	3300025961	Switchgrass Rhizosphere	RQACAPMGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG
Ga0207640_102310012	3300025981	Corn Rhizosphere	PPLDKTRARQACAAMGSLHSIVVTVNAHKRRRTWYVIDPDRALAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVATQINDPMPHGFNPYFDLPAG
Ga0207677_116711681	3300026023	Miscanthus Rhizosphere	KRHRAPPPLDKARARQACAPMGALVSIVVTVDAHKRRRTWYILDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS
Ga0207639_111336462	3300026041	Corn Rhizosphere	RARQACAPMGALHSIVVTVDAHKRRRTWYIIDPDPAVSAQYAALGLDLIPGCKVLVDAELMRPTAILDFDPACSSGDARSAAGFNPYFDLPPS
Ga0207639_113121681	3300026041	Corn Rhizosphere	CAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG
Ga0207639_120157771	3300026041	Corn Rhizosphere	RARQACAPMGTLHSIVVTVNPNKRRRTWYVIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGDDPLPHGFNPYFDLSAG
Ga0207639_122259401	3300026041	Corn Rhizosphere	MGTLHSIVVTVDARKRRRTWYILEPDLAVSAQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVSAQDVSPMPHGFNPYFDLPAG
Ga0207702_100874871	3300026078	Corn Rhizosphere	RTRGRTPPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG
Ga0207702_109712511	3300026078	Corn Rhizosphere	SRERVPPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDNDPMPHGFNPYFDLPAG
Ga0207676_104589151	3300026095	Switchgrass Rhizosphere	VSEAPPRRRPRTPPPLDKARARQACAPMGALVSIVVTVDAHKRRRTWYVLDPDPAVSAQYAALGLDLVPGCKVLVDADVMRPIAILDFDPAVSAGTDPTPHGFNPYFDLPPS
Ga0207675_1021659842	3300026118	Switchgrass Rhizosphere	DKARARQACAPMGTLHSIVVTVNPNKRRRTWYIIEPDFAVAEQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGGDPLPHGFNPYFDLSAG
Ga0209969_10181832	3300027360	Arabidopsis Thaliana Rhizosphere	TSRERMPPPLDKARARQACAPMGTLHSIVVTVNARKRRRTWYVVDPDFAVAAQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQGVDPMPHGFNPYFDLPAG
Ga0209177_101403281	3300027775	Agricultural Soil	KSPPRRARERSVPPLDKARARQACAPMGTLHSIVVTVNAHKRRRTWYIIDPDRAMSAQYAAAGFDLTPGCKVLVDAEAMRPVALVDFDPAVSAQDGSPMPHGFNPYFDLPAG
Ga0209074_100106924	3300027787	Agricultural Soil	TTREQAKAMIDDTPVRTRGRTPPPIDKARARQACAPMGALHSIVVTVDVRKRRRTWYIVDPDPAVATQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSASDASPMPHGFNPYFDLPAG
Ga0209974_102458662	3300027876	Arabidopsis Thaliana Rhizosphere	PPPLDKARARQACAPMGTLHSIVVTVNPNKRRRTWYVVEPDFAMAAQYAAAGLDLMPGYKVLVDAELMRPVALLDFDPAVSAQGSDPLPHGFNPYFDLAAG
Ga0209168_101728621	3300027986	Surface Soil	ARQACLPMGTLLSIAITVDARKRRRTWYIVDPDPAVSAQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAEDCAPMPHGFNPYYDLPAG
Ga0247828_111721342	3300028587	Soil	CLAGAPMGTLHSIVVTVNARKRRRTWYVVDPDFAVAAQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQGVDPMPHGFNPYFDLPAG
Ga0310888_100185356	3300031538	Soil	GTLHSIVVTVNAHKRRRTWYVVDPDTAVAPQYAAAGLDLTPGCKVLVDAELMRPVALLDFDPAVSAQDSDPMPHGFNPYFDLPAG
Ga0310813_101956211	3300031716	Soil	SIVVTINAHKRRRTWYVVDPDAALAPQYAAAGLDLTPGCKVLVDAEVMRPVALLDFDPAVTALDSDRSPHGFNPYFDLPAG
Ga0310813_106097872	3300031716	Soil	RGRHPPPLDKARARQACLPMGTLHSIVVTVDVRKRRRTWYIIDPDPAVAAQYSAAGLDLTPGCKVLVDAEAMRPIALVDFDPAVSAEDASPMPHGFNPYFDLPAG
Ga0308175_1001513681	3300031938	Soil	FARTSRERVPPPLDKARARQACAPMGTLHSIVVTVNAQKRRRTWYVVDPDPAMSMQYAAAGLELTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG
Ga0308174_104918992	3300031939	Soil	QSGIDDTPPRTRGRTPPPLDKARARQACLSMGTLHSIVVTVDVRKRRRTWYIIDPDPAVSAQYSAAGLELTPGCKVLVDAEAMRPVALVDFDPAVSAQDCSPMPHGFNPYFDLPAG
Ga0308174_118954471	3300031939	Soil	GAPGDAGRRVPPPLDKARARQACAPMGALHSIVVTVDAHKRRRTWYVLDPDPAVGAQYAALGLDLIPGCKVLVDAEVMRPVAVLDFDAGVSAGDERSPLGFNPYFDLPPS
Ga0308176_104878212	3300031996	Soil	VTVDVHKRRRTWYIIDPDPAVGAQYSAAGLDLTPGCKVLVDAEAMRPVALVDFDPAVSAEDCSPMPHGFNPYFDLPAG
Ga0308176_125548652	3300031996	Soil	ERVPPPLDKARARQACAPMGTLHSIVVTVNAQKRRRTWYVVDPDPAMSMQYAAAGLELTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG
Ga0308173_118467542	3300032074	Soil	LHSIVVTVNAQKRRRTWYVVDPDPAMSMQYAAAGLELTPGCKVLVDAEVMRPVALLDFDPAVSAQDADPMPHGFNPYFDLPAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072398

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences