NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072391

Metagenome / Metatranscriptome Family F072391

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072391
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 60 residues
Representative Sequence MAKTVPVIGIDTGELRWIRMLVHLLRHPDPSVPELARQALLYLTDAAGKRVPSSSGTLDHAG
Number of Associated Samples 94
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.174 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(15.703 % of family members)
Environment Ontology (ENVO) Unclassified
(31.405 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.190 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.67%    β-sheet: 2.22%    Coil/Unstructured: 61.11%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF03646FlaG 19.83
PF00582Usp 7.44
PF02561FliS 4.96
PF03551PadR 3.31
PF13378MR_MLE_C 3.31
PF02954HTH_8 2.48
PF01019G_glu_transpept 1.65
PF07977FabA 0.83
PF04020Phage_holin_4_2 0.83
PF02861Clp_N 0.83
PF07883Cupin_2 0.83
PF12704MacB_PCD 0.83
PF02786CPSase_L_D2 0.83
PF10282Lactonase 0.83
PF07494Reg_prop 0.83
PF01336tRNA_anti-codon 0.83
PF13478XdhC_C 0.83
PF00289Biotin_carb_N 0.83
PF03235DUF262 0.83
PF10135Rod-binding 0.83
PF04542Sigma70_r2 0.83
PF13432TPR_16 0.83
PF00149Metallophos 0.83
PF00092VWA 0.83
PF00501AMP-binding 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG1334Uncharacterized conserved protein, FlaG/YvyC familyGeneral function prediction only [R] 19.83
COG1516Flagellin-specific chaperone FliSCell motility [N] 14.88
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 3.31
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 3.31
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 3.31
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 1.65
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 0.83
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.83
COG07643-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydrataseLipid transport and metabolism [I] 0.83
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.83
COG1479DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domainsDefense mechanisms [V] 0.83
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.83
COG1950Uncharacterized membrane protein YvlD, DUF360 familyFunction unknown [S] 0.83
COG3292Periplasmic ligand-binding sensor domainSignal transduction mechanisms [T] 0.83
COG4706Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domainLipid transport and metabolism [I] 0.83
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.83


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.17 %
All OrganismsrootAll Organisms0.83 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300033402|Ga0326728_10002436All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus61902Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil15.70%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil12.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil7.44%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.31%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.31%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.48%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.48%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.48%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds1.65%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.65%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.65%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland1.65%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.65%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.65%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.65%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.65%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.65%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.65%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.83%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.83%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.83%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.83%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.83%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.83%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.83%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.83%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.83%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.83%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.83%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459013Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cmEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018018Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300019251Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019263Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021858Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025865Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027497Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027570Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N57_084200702170459013Grass SoilMAKTALIGVEPSELPWLRVLVALLRHPDPAVPELARQALLYLIDGAGSRELSPSE
INPhiseqgaiiFebDRAFT_10545992823300000364SoilMPQTVLIGIEPQELHWLRTLIALLRHPDPSVPELSRQALIYLTEAAGKRVLPRSEPLDHTG*
JGI12270J11330_1005632833300000567Peatlands SoilMGRTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALLYLTEAAGKREPSWPASVDHAG*
JGI12270J11330_1011893633300000567Peatlands SoilMVKTVPIIGIENAELRWIRMLVALLRHPDPSMPELARQALLYLTEAAGKRNPPAEGEPRRAAYPRGPAARRVDAT*
JGIcombinedJ13530_10113086943300001213WetlandMDKTVPMIGIEPDELRWIRILISLLRHPDPSVPELARQALIYLSDASAGRPPSAPDSLDQTG*
JGIcombinedJ13530_10639612513300001213WetlandMNNTVPMIGLEAAELRWMRMLVALLRHPDPTVPELARQALIYLSDAAGKHVVGQNSTLDHAG*
JGI12269J14319_1006604223300001356Peatlands SoilMAKTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALVYLTDAAGRREPAPPESLDHAG*
C688J18823_1043001213300001686SoilKTVLIGLEPHELPWLRSLVALLRHPDPGVPELARQALLYLTEAAGKHTSSCIDTHAG*
C688J35102_12005986823300002568SoilMGKTVLIGLEPHELPWLRSLVALLRHPDPGVPELARQALLYLTEAAGKHTSSCIDTHAG*
Ga0063454_10003679533300004081SoilLEPNELPWLRSLVALLRHPDPGVPELARQALLYLTEAAGKHTSSRIDTHAG*
Ga0062589_10007275143300004156SoilMAKTVLIGIEAHELHWLRVLVALLRHPDPSVPELARQALLYLSDAAGKRALQRPGALDHAG*
Ga0070683_10016506543300005329Corn RhizosphereMTKTVSVIGIDPAEIHWIRMLVTLLRHPDPSVPELARQALLYLTDAAGKRIQPHPETLDHAG*
Ga0070683_10123375913300005329Corn RhizosphereMIGIQTSELRWMRLLVSLLRHPDPTVPELTRQALVYLTETATTRDCAQPAPLDHMG*
Ga0066388_10171948523300005332Tropical Forest SoilVPKTVPLIGIEVEELSWLRMLVALLRHPDPNVPELARQALLYLNEAAHSGRRPGPSESLDSAG*
Ga0070666_1021393823300005335Switchgrass RhizosphereMPKTVLIGLEPHELHWLRALVALLRHPDPSVPELARQALVYLTEAAGKRDVPA*
Ga0070667_10194780613300005367Switchgrass RhizosphereMNFRSRTKRSQKVSLMTKTVSVIGIEPAEIHWIRMLVTLLRHPDPSVPELARQALDYLTDAAGKRLQPHPETLDHAG*
Ga0070741_1073364413300005529Surface SoilMSKMALIGVEPNELHWLRSLVALLRHPDPSVPELARQALIYLTEAAGKRVSDKIDGLNHAG*
Ga0070734_10000146113300005533Surface SoilMNKTVSVIGLDAAELRWIRMLVSLLRHPDPSVAELARQALTYLTEAAARRIPTQAETCNHAS*
Ga0070734_1021195733300005533Surface SoilMTKTVSVIGLDAAEVRWIRLLVGLLRHPDPGVPELARQALLYLTASAGKRAVSPGTMNQAG*
Ga0070684_10219324523300005535Corn RhizospherePAELRWMRMLVSLLRHPDPSVPELARQALLYLTDAAGKRAPLPNESLDHAG*
Ga0068864_10133864323300005618Switchgrass RhizosphereMAKTALIGIEPCELPWLRVLVALLRHPDPAVPELARQALVYLVDDAGSRELSPSDRRLQLLS*
Ga0066903_10271822413300005764Tropical Forest SoilMGKTVLIGLEPHELQWLRSLVTLLRHPDPSVPELARQALLYVTETAGKRSISRSEAPDQPLIRVIPPK*
Ga0066903_10533336413300005764Tropical Forest SoilVAKTVPIIGIEAEELCWLRALVSLLRHPDPNIPELTRQALLYLTETASKRGRSQHSDTLNHAG*
Ga0066903_10605814623300005764Tropical Forest SoilMGKTGLIGLEPHELQWLRTLVALLRHPDPSVPELARQALLYVTEAAGKRSISRSESLDHAG*
Ga0068863_10054384733300005841Switchgrass RhizosphereMAKTALIGIEPCELPWLRVLVALLRHPDPAVPELARQALVYLVDDVGSRELSPSDRRLHLLS*
Ga0070766_1107829023300005921SoilMTKTVSVIGIDAAEIRWIRLLVSLLRHPDPSVPELARQALLYLTEAAGKRAASRPETLNHAG*
Ga0070717_1188308523300006028Corn, Switchgrass And Miscanthus RhizosphereELQWIRTLVALLRHPDPNVGELSRQALIYLSETAGMREILQSGPLDYAG*
Ga0066652_10093063123300006046SoilMPQTVLIGIEPHELHWLRTLIALLRHPDPAVPELSRQALIYLTEAAGKRALPRPEPLDHTG*
Ga0075030_10020649813300006162WatershedsMAKTVPIIGVEPEEVRWIHTLVSLLRHPDPSVPELARQALLYLTAAAGERVPSQPEPLDHAG*
Ga0068871_10156896113300006358Miscanthus RhizosphereKDSRTPYRATAGNFEPFTNFRSRTKRSQKVSVMTKTVSVIGIDPAEIHWIRMLVTLLRHPDPSVPELARQALLYLTDAAGKRIQPHPETLDHAG*
Ga0068865_10065438623300006881Miscanthus RhizosphereMAKTISVIGVDPAELRWMRMLVSLLRHPDPSVPELARQALLYLTDAAGKRAPLPNESLDHAG*
Ga0073928_1040998723300006893Iron-Sulfur Acid SpringMADTVPIIGIETSELRWIRMLVSLLRHPDPTVPELTRQALVYLIETARKRGTPECQPLDFTG*
Ga0079219_1091077323300006954Agricultural SoilMGKAVLIGLEPHELHWLRALVTLLRHPDPSVPELARQALLYLGEAAGKRSIACGEIPASRRVVP*
Ga0105240_1104763023300009093Corn RhizosphereMAKTVLIGVETQELQWLRVLVALLRHPDPSVPELARQALVYLSDAAGKRALSHANSIDHRG*
Ga0105242_1030084723300009176Miscanthus RhizosphereVDPAELRWMRMLVSLLRHPDPSVPELARQALLYLTDAAGKRAPLPNESLDHAG*
Ga0105248_1341122523300009177Switchgrass RhizosphereMAKTVLIGIEPCELPWLRVLVALLRHPDPAVPELARQALVYLVDDVGSRELSPSD
Ga0116225_109114313300009524Peatlands SoilMANTVPVIGIETSELRWIRMLVSLLRHSDPSVPELARQALLYLTEAAGRRGEPQTEPLDYTG*
Ga0116216_1066560323300009698Peatlands SoilMAKTVPMIGIEAAELRWIRMLVMLLRHPDPSIPELARQALLYLTEAAAKRASSA*
Ga0126370_1108552623300010358Tropical Forest SoilMPKTVPIIGVEVPELCWVRMLITLLRHPDPGVPELARQALIYLTDAAGKRPSRHHDPDSLDHAG*
Ga0105239_1318951823300010375Corn RhizosphereMTKTVSVIGIEPAEIHWIRMLVTLLRHPDPSVPELARQALDYLTDAAGKRLQPHPETLDHAG*
Ga0136449_10089859143300010379Peatlands SoilMTKTVSVIGIETAEIRWIRMLVSLLRHPDPSVAELARQALIYLTEAAGKRLTSQSETLNHAG*
Ga0134124_1030944023300010397Terrestrial SoilMAGMADTVSIIGIETTEIRWVRLLVALLRHPDPSVPELARQALLYLKDAAGKRTTASPETLNHAG*
Ga0134124_1268954223300010397Terrestrial SoilMSNTISVIGIEAAELRWIRMLVGLLRHTDPSMPELARQALLYLTEAAG
Ga0137378_1034210733300012210Vadose Zone SoilMAKTVPVIGVETAELRWLRMLIALLRHPDPSVPELARQALLYLTEAAGRREPSNPESLNHAG*
Ga0150984_11226095313300012469Avena Fatua RhizosphereMAKAVLIGLEAQELHWLRALVALLRHPDPSVPELARQALLYLTDAAGKRAVPPPDSLDHTG*
Ga0137398_1073791523300012683Vadose Zone SoilMTKTVSVIGIETTEIHWIRLLVALLRHPDPSMPELARQALLYLSDAAGKREISVPGTLDQAG*
Ga0157378_1136070123300013297Miscanthus RhizosphereMTKTVSVIGIDPAEIHWIRMLVALLRHPDPSVPELARQALVYLTDAAGKRIPSHPETLDHAG*
Ga0157375_1132894013300013308Miscanthus RhizosphereTVLIGLEPHELHWLRALVALLRHPDPSVPELARQALVYLTEAAGKRDVPA*
Ga0181517_10005441133300014160BogMDRPVTVIGIEPAELRSIRTLVSLLRHPDPSVPELTRQALCYLADMAGKRADPDPGPDP*
Ga0182021_1232938523300014502FenMGKTIPMIGIEAAELRWIRMLVFLLRHPDPSMPELARQALLYLTEAAAKREPSPANQAR*
Ga0132258_1147225633300015371Arabidopsis RhizosphereMPKAVLIGLEPHELHWLRTLVALLRHPDPSVPELARQALLYLTEAAGKRAVANTNSLDHAG*
Ga0187808_1023279123300017942Freshwater SedimentSKAQLMAKTVSVIGVGVSELRWIRMLVSLLRHPDPSIPELARQALLHLTDSAGKRSIPGDPATVSDHPAISS
Ga0187819_1005295943300017943Freshwater SedimentMAKTVPMIGIETAELRWVRMLVCLLRHPDPSIPELARQALLYLTDAAGKRATPTDPETRRQADVT
Ga0187776_1100699723300017966Tropical PeatlandMAKTVPVIGIDTGELRWIRMLVHLLRHPDPSVPELARQALLYLSDAAGQRVPSSSDTLDHTG
Ga0181520_1002075953300017988BogMDRPVTVIGIEPAELRSIRTLVSLLRHPDPSVPELTRQALCYLADMAGKRADPDPGPDP
Ga0187886_131752313300018018PeatlandTSELRWIRMLIFLLRHPDPGVPELARQALIYLTASAARRPQPDTLGHAG
Ga0187874_1019145513300018019PeatlandVLINKTVSVIGVESNELCWIRMLILLLRHPDPSVPELARQALLYLTDAAVKR
Ga0187871_1074644323300018042PeatlandMANTVPIIGIETSELRWIRILVFLLRHPDPSIPELSRQALLYLTESAAKR
Ga0187795_121260323300019251PeatlandMAKPVSLIGIEPAELRWLRMLLQLLRHPDPSVPELARQALIYLADAAQKRAQPKLEPLDHAG
Ga0184647_100536713300019263Groundwater SedimentMAKAVLIGLEAHELQWLRALVALLRHPDPSVPELARQALVYLTDAAAKRAVPRPE
Ga0182031_134706843300019787BogMDRPVTVIGIEPAELRSIRTLVSLLRHPDPSVPELTRQALRYLADLAGKRGDPDPG
Ga0210389_1073431123300021404SoilMAKTVPIIGIETSELPWIRMLVSLLRHPDPKVPELARQALVYLTETSANSALARQEPLDHAG
Ga0210402_1155873123300021478SoilMTTTVSVIGIEPTEIRWIRILVALLRHPDPSMPELARQALVYLTDAAGKRDGSASASLDPSESLDQAG
Ga0213852_142951123300021858WatershedsMAKTVPIIGVEPEEVRWIHTLVSLLRHPDPSVPELARQALLYLTEAAGEKVPSQPEPLGHAG
Ga0213853_1116008713300021861WatershedsMAKTVPIIGVEPEEVRWIHTLVSLLRHPDPSVPELARQALLYLAEAAGERVPSQPEPLGHAG
Ga0212123_1017206723300022557Iron-Sulfur Acid SpringMADTVPIIGIETSELRWIRMLVSLLRHPDPTVPELTRQALVYLIETARKRGTPECQPLDFTG
Ga0209226_1022496213300025865Arctic Peat SoilMAKTVSVIGIEDKELRWIRSLILLLRHPDPSIPELARQALLYLTRSAAE
Ga0207680_1028076213300025903Switchgrass RhizosphereMPKTVLIGLEPHELHWLRALVALLRHPDPSVPELARQALVYLTEAAGKRDVPA
Ga0207695_1160041823300025913Corn RhizosphereMAKTVLIGVETQELQWLRVLVALLRHPDPSVPELARQALVYLSDAAGKRALSHANSIDHR
Ga0207700_1163035413300025928Corn, Switchgrass And Miscanthus RhizosphereTVPVIGIEAHELDWLRMLVSLLRHPNPSVPELTRQALLYLTEEARKDPPITNR
Ga0207704_1073895823300025938Miscanthus RhizosphereMAKTISVIGVDPAELRWMRMLVSLLRHPDPSVPELARQALLYLTDAAGKRAPLPNESLDHAG
Ga0207661_1094935323300025944Corn RhizosphereMANTVPMIGIQTSELRWMRLLVSLLRHPDPTVPELTRQALVYLTETATTRDCAQPAPLDHMG
Ga0207641_1184561613300026088Switchgrass RhizosphereMAKTALIGIEPCELPWLRVLVALLRHPDPAVPELARQALVYLVDDVGSRELSPSDRRLHLLS
Ga0208199_101987033300027497Peatlands SoilMAKTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALVYLTDAAGRREPAPPESLDHAG
Ga0208043_115139323300027570Peatlands SoilMVKTVPIIGIENAELRWIRMLVALLRHPDPSMPELARQALLYLTEAAGKRNPPAEGEPRRAAYPR
Ga0208324_109734013300027604Peatlands SoilTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALVYLTDAAGRREPAPPESLDHAG
Ga0208044_100387733300027625Peatlands SoilMVKTVPIIGIENAELRWIRMLVALLRHPDPSMPELARQALLYLTEAAGKRNPPAEGEPRRAAYPRGPAARRVDAT
Ga0208827_112023523300027641Peatlands SoilMVKTVPIIGIENAELRWIRMLVALLRHPDPSMPELARQALLYLTEAAGKRNPPA
Ga0209060_10000132103300027826Surface SoilMNKTVSVIGLDAAELRWIRMLVSLLRHPDPSVAELARQALTYLTEAAARRIPTQAETCNHAS
Ga0209060_1014177333300027826Surface SoilMTKTVSVIGLDAAEVRWIRLLVGLLRHPDPGVPELARQALLYLTASAGKRAVSPGTMNQA
Ga0209517_1004720343300027854Peatlands SoilMGRTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALLYLTEAAGKREPSWPASVDHAG
Ga0209380_1072442223300027889SoilMTKTVSVIGIDAAEIRWIRLLVSLLRHPDPSVPELARQALLYLTEAAGKRAASRPETLNHAG
Ga0209698_1082424823300027911WatershedsMAKTVPIIGVEPEEVRWIHTLVSLLRHPDPSVPELARQALLYLTAAAGERVPSQPEPLD
Ga0209168_1031155133300027986Surface SoilMAGTVPVIGVEVAELRWIRMLIALLRHPDPSMPELARQALLYLTDAAG
Ga0302320_1003421173300031524BogMDRPVTVIGIEPAELRSIRTLVSLLRHPDPSVPELTRQALRYLADLAGKRGDPDPGPDQTHPADSQITLDS
Ga0307474_1018270743300031718Hardwood Forest SoilMANKTVPVIGIETSELRWIRMLVSLLRHPDPSVPELARQALVYLTDMAGKRGVSKGEPLDHTG
Ga0307478_1045840023300031823Hardwood Forest SoilMANTVPIIGIETSELRWIRMLVSLLRHPEPNVPELTRQALLYLSDEAGKRSIPKAERLDHMG
Ga0308175_10091812523300031938SoilMAKTVLIGIEPRELPWLRVLVSLLRHPDPVMPELAREALLYLAQRAGDRELPHSNSAG
Ga0308175_10174380113300031938SoilMKGANAMANTVSVIGVETAELRWLRMLITLLRHPDPSVPELARQALVYLTDAAGKRQAG
Ga0308175_10260048513300031938SoilMAKTILIGVEPHELNWLRILVALLRHPDPGVPELARQALLFLTQDAG
Ga0315274_1020525833300031999SedimentMPKTVPVIGVETSELRWIRMLIFLLRHPDPSVPELARQALVYLTDSASSRAQPEALDHAG
Ga0308173_1025750233300032074SoilMAKTVLIGVEPHELNWLRILVALLRHPDPGVPELARQALLFLTEDAGKRELASSVPLNHA
Ga0308173_1029099713300032074SoilMAKTALIGIEPHELCWLRVLVTLLRHPDPAVPELARQALLYLTDAAGSRELSQSDVLHPA
Ga0308173_1104610013300032074SoilMAKTILIGVEPHELNWLRILVALLRHPDPGVPELARQALLFLTQDAGKRELTRPTPLNHA
Ga0308173_1137340713300032074SoilMAKTALIGIEPRELPWLRVLVALLRHPDPGVPELARQALLYLVDGAGQRELTASRVPKSDKLTDSRQCS
Ga0308173_1151038523300032074SoilMAKTVLIGIEPRELPWLRVLVTLLRHPDPAVPELARQALQYLVENAGSRELSRSNGAG
Ga0308173_1152645423300032074SoilMAKTVLIGVEPHELNWLRILVALLRHPDPGVPELARQALLFLSREAGNREVPTPAPRDCA
Ga0311301_1001051483300032160Peatlands SoilMANTVPVIGIETSELRWIRMLVSLLRHSDPSVPELARQALLYLTEAAGRRGEPQTEPLDYTG
Ga0311301_1107865733300032160Peatlands SoilMAKTVPMIGIEAAELRWIRMLVMLLRHPDPSIPELARQALLYLTEAAAKRASSA
Ga0311301_1214686323300032160Peatlands SoilMTKTVSVIGIETAEIRWIRMLVSLLRHPDPSVAELARQALIYLTEAAGKRLTSQSETLNHAG
Ga0335085_1011273673300032770SoilMAKTVPIIGIETSELRWLRMLVALLRHPDPTVPELARQALLYLTDAAASRAVSKPEPLNHAG
Ga0335085_1076817523300032770SoilMAKTVPMIGIEPAELRWIRMLVMLLRHPDPSIPELARQALLYLTEAAAKRASSA
Ga0335085_1089231723300032770SoilMDKTVPMIGIEPDELRWIRILISLLRHPDPSVPELARQALIYLSDASAGRPSAPDSLDQT
Ga0335085_1210163923300032770SoilMLRTALIGVENHELGWLRVLLSLLRHPDPTVPELARQALLYLEDAAYKPPT
Ga0335082_1019816113300032782SoilMAKTVPVIGIDTGELRWIRMLVHLLRHPDPSVPELARQALLYLTDAAGQRVPSSSDTLDHAG
Ga0335079_1001614043300032783SoilMAKTISIIGLDPTEIRWIRMLVALLRHPDAGVAELARQALLYLTDAAGKRVPPAESVNQV
Ga0335079_1011247523300032783SoilMAKTVSLIGIDATELRWMRLLLSLLRHPDPNVPELAREALVYMADAASRRGTGRRDLDYA
Ga0335079_1014273623300032783SoilMAKPVSLIGIEPAELRWLRMLLQLLRHPDPSVPELARQALVYLVDAAQKRAQPKPGLLDHAG
Ga0335079_1096805523300032783SoilMAKTTSVIGIQPAELRWIRMLTLLLRHSDPSIPELARQALLYLSDAATKREVPTSETLNHAG
Ga0335079_1132865513300032783SoilMSNTVSVIGLSAAEIRWIRLLVSLLRHPDPSVPELARQALLYLTDAAIKRTSSAG
Ga0335078_1037983123300032805SoilMGQTVPVIGVETAELRWIRMLISLLRHPDPSVPELARQALLYLTEAAGKREPPLPASLDHAG
Ga0335080_1182356313300032828SoilGREDYCKAPPMAKTVPMIGIEPAELRWIRMLLMLLRHPDPSIPELARQALLYLTEAAAKRVSSA
Ga0335070_1160946113300032829SoilMGRTVPVIGVEPSELRWIRMLIFLLRHPDPAIPELARQALLYLVEAAAKRGLPPANEAR
Ga0335081_1008675083300032892SoilMAKTVPVIGIDTGELRWIRMLVHLLRHPDPSVPELARQALLYLTDAAGKRVPSSSGTLDHAG
Ga0335081_1233817113300032892SoilMAQTTSMIGISPAELRWIRTLVHLLRHPDPSVPELTRQALVYMTDAAARTA
Ga0335071_1024189533300032897SoilMGRTVPVIGVEPNELRWIRMLIFLLRHPDPSMPELARQALLYLMEAAAKRAVPPANQAL
Ga0335071_1026892943300032897SoilMGRTVPVIGVEPSELRWIRMLIFLLRHPDPAIPELARQALLYLVEAAAKRGQPRANEAR
Ga0335076_1155510723300032955SoilEGWAMAKTISIIGLDPTEIRWIRMLVALLRHPDAGVAELARQALLYLTDAAGKRVPPAESVNQVR
Ga0335084_1144580023300033004SoilMDKTLGMNGIAVSEIHWIRMLVFLLRHPDPTVPELARQALLYLSDAAGRRDLLQNTVAKQGT
Ga0326728_10002436273300033402Peat SoilMAKTVPIIGIDPGELEWIRMLVQLLRHPDPIMPELARQALLYLTDNAGLAKLDSTRFDHA
Ga0326728_1011862163300033402Peat SoilMGQTVPIIGVETAELRWIRMLISLLRHPDPSVPELARQALLYLTEAAGKREPSWPASVDHAG


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