Metagenome / Metatranscriptome Family F072281

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072281
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	60 residues
Representative Sequence	MKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Number of Associated Samples	101
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.98 %
% of genes near scaffold ends (potentially truncated)	47.11 %
% of genes from short scaffolds (< 2000 bps)	83.47 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.240 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (19.835 % of family members)
Environment Ontology (ENVO)	Unclassified (52.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (61.983 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 42.05% Coil/Unstructured: 57.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF08299	Bac_DnaA_C	29.75
PF00712	DNA_pol3_beta	26.45
PF02767	DNA_pol3_beta_2	19.01
PF02768	DNA_pol3_beta_3	12.40
PF13175	AAA_15	4.13
PF02463	SMC_N	4.13
PF00468	Ribosomal_L34	0.83
PF02518	HATPase_c	0.83
PF05258	DciA	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	57.85
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	29.75
COG0230	Ribosomal protein L34	Translation, ribosomal structure and biogenesis [J]	0.83
COG5512	Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Candidatus Nanopelagicales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales	13.22 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.31 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.83 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Candidatus Nanopelagicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae	9.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.96 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.83 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.83 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Candidatus Planktophila	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila	9.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.83 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.83 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Candidatus Planktophila limnetica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	9.09 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.96 %
Actinopolymorpha alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba	0.83 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.83 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000206\|M3P_c10045139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	676	Open in IMG/M
3300000268\|M3P_10093717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300000268\|M3P_10141481	Not Available	734	Open in IMG/M
3300000756\|JGI12421J11937_10035974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1730	Open in IMG/M
3300001282\|B570J14230_10032086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1854	Open in IMG/M
3300002835\|B570J40625_100257126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1813	Open in IMG/M
3300003388\|JGI25910J50241_10151935	Not Available	602	Open in IMG/M
3300003413\|JGI25922J50271_10001956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	5956	Open in IMG/M
3300003413\|JGI25922J50271_10024839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba	1472	Open in IMG/M
3300003413\|JGI25922J50271_10070348	Not Available	760	Open in IMG/M
3300004096\|Ga0066177_10525709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	525	Open in IMG/M
3300004112\|Ga0065166_10339824	Not Available	619	Open in IMG/M
3300004772\|Ga0007791_10065441	Not Available	1146	Open in IMG/M
3300005662\|Ga0078894_10399419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1242	Open in IMG/M
3300005662\|Ga0078894_10820589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	812	Open in IMG/M
3300005662\|Ga0078894_10852742	Not Available	793	Open in IMG/M
3300006030\|Ga0075470_10048746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1298	Open in IMG/M
3300006030\|Ga0075470_10113873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	803	Open in IMG/M
3300006639\|Ga0079301_1061033	Not Available	1202	Open in IMG/M
3300006641\|Ga0075471_10118733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1412	Open in IMG/M
3300006805\|Ga0075464_10307842	Not Available	954	Open in IMG/M
3300006875\|Ga0075473_10339528	Not Available	608	Open in IMG/M
3300007549\|Ga0102879_1075712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1060	Open in IMG/M
3300007550\|Ga0102880_1100949	Not Available	758	Open in IMG/M
3300007639\|Ga0102865_1225017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	559	Open in IMG/M
3300008055\|Ga0108970_11123217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1210	Open in IMG/M
3300008108\|Ga0114341_10503570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300008119\|Ga0114354_1030216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2407	Open in IMG/M
3300009080\|Ga0102815_10259966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300009155\|Ga0114968_10314384	Not Available	872	Open in IMG/M
3300009155\|Ga0114968_10749187	Not Available	509	Open in IMG/M
3300009158\|Ga0114977_10314279	Not Available	890	Open in IMG/M
3300009159\|Ga0114978_10554247	Not Available	669	Open in IMG/M
3300009183\|Ga0114974_10083854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	2072	Open in IMG/M
3300009184\|Ga0114976_10167931	Not Available	1221	Open in IMG/M
3300009184\|Ga0114976_10387204	Not Available	733	Open in IMG/M
3300009184\|Ga0114976_10472852	Not Available	649	Open in IMG/M
3300010160\|Ga0114967_10140542	Not Available	1352	Open in IMG/M
3300010160\|Ga0114967_10389707	Not Available	697	Open in IMG/M
3300010370\|Ga0129336_10282386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	927	Open in IMG/M
3300010885\|Ga0133913_10388227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3690	Open in IMG/M
3300010885\|Ga0133913_11564165	Not Available	1666	Open in IMG/M
3300011009\|Ga0129318_10070894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300012968\|Ga0129337_1404601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2115	Open in IMG/M
3300013004\|Ga0164293_10715587	Not Available	641	Open in IMG/M
3300013005\|Ga0164292_10167236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1594	Open in IMG/M
3300013005\|Ga0164292_10460287	Not Available	839	Open in IMG/M
3300013014\|Ga0164295_10336741	Not Available	1141	Open in IMG/M
3300018868\|Ga0187844_10154634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300020141\|Ga0211732_1186375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4819	Open in IMG/M
3300020157\|Ga0194049_1097712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300020160\|Ga0211733_10791303	Not Available	2928	Open in IMG/M
3300020162\|Ga0211735_10066385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3242	Open in IMG/M
3300020162\|Ga0211735_10845626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1874	Open in IMG/M
3300020172\|Ga0211729_10675212	Not Available	3189	Open in IMG/M
3300020540\|Ga0208227_1056585	Not Available	526	Open in IMG/M
3300021069\|Ga0194062_1200558	Not Available	574	Open in IMG/M
3300021071\|Ga0194058_10071322	Not Available	1167	Open in IMG/M
3300021340\|Ga0194041_10024013	Not Available	2055	Open in IMG/M
3300021516\|Ga0194045_1187068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	513	Open in IMG/M
3300021519\|Ga0194048_10074302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1333	Open in IMG/M
3300021602\|Ga0194060_10047037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2532	Open in IMG/M
3300021956\|Ga0213922_1013981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2154	Open in IMG/M
3300021962\|Ga0222713_10680379	Not Available	589	Open in IMG/M
3300021963\|Ga0222712_10194895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1331	Open in IMG/M
3300021963\|Ga0222712_10197016	Not Available	1322	Open in IMG/M
3300021963\|Ga0222712_10317262	Not Available	972	Open in IMG/M
3300022543\|Ga0212119_1049374	Not Available	663	Open in IMG/M
3300022747\|Ga0228703_1019182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2240	Open in IMG/M
3300023179\|Ga0214923_10037449	Not Available	3916	Open in IMG/M
3300024348\|Ga0244776_10944845	Not Available	507	Open in IMG/M
3300024572\|Ga0255268_1170112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	539	Open in IMG/M
3300024856\|Ga0256304_1128806	Not Available	504	Open in IMG/M
3300025763\|Ga0255250_1143835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300026567\|Ga0256303_1115062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	567	Open in IMG/M
3300026568\|Ga0255240_1084688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300027221\|Ga0208557_1075093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300027236\|Ga0208026_1046084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300027286\|Ga0255129_1037390	Not Available	796	Open in IMG/M
3300027290\|Ga0255136_1059373	Not Available	563	Open in IMG/M
3300027300\|Ga0255140_1049370	Not Available	771	Open in IMG/M
3300027333\|Ga0255138_1089540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	505	Open in IMG/M
3300027368\|Ga0255133_1102359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300027534\|Ga0255125_1047678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300027589\|Ga0255123_1030699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1066	Open in IMG/M
3300027608\|Ga0208974_1172135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	537	Open in IMG/M
3300027736\|Ga0209190_1190513	Not Available	854	Open in IMG/M
3300027746\|Ga0209597_1147855	Not Available	1007	Open in IMG/M
3300027754\|Ga0209596_1036472	Not Available	2707	Open in IMG/M
3300027759\|Ga0209296_1023466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila	3484	Open in IMG/M
3300027769\|Ga0209770_10097694	Not Available	1212	Open in IMG/M
3300027797\|Ga0209107_10052670	Not Available	2288	Open in IMG/M
3300027804\|Ga0209358_10528287	Not Available	531	Open in IMG/M
3300027963\|Ga0209400_1272156	Not Available	661	Open in IMG/M
3300027963\|Ga0209400_1378389	Not Available	516	Open in IMG/M
3300027971\|Ga0209401_1152483	Not Available	900	Open in IMG/M
3300031784\|Ga0315899_10359869	Not Available	1425	Open in IMG/M
3300031786\|Ga0315908_10520290	Not Available	992	Open in IMG/M
3300031963\|Ga0315901_10166008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	1949	Open in IMG/M
3300031963\|Ga0315901_10300622	Not Available	1330	Open in IMG/M
3300032092\|Ga0315905_10368354	Not Available	1358	Open in IMG/M
3300032092\|Ga0315905_11549121	Not Available	517	Open in IMG/M
3300033992\|Ga0334992_0434875	Not Available	581	Open in IMG/M
3300033994\|Ga0334996_0423114	Not Available	619	Open in IMG/M
3300034021\|Ga0335004_0350366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	854	Open in IMG/M
3300034050\|Ga0335023_0083811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales	1849	Open in IMG/M
3300034051\|Ga0335024_0575583	Not Available	541	Open in IMG/M
3300034061\|Ga0334987_0486850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales	756	Open in IMG/M
3300034082\|Ga0335020_0255453	Not Available	866	Open in IMG/M
3300034082\|Ga0335020_0392269	Not Available	669	Open in IMG/M
3300034093\|Ga0335012_0012741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	5040	Open in IMG/M
3300034093\|Ga0335012_0202369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales	1051	Open in IMG/M
3300034101\|Ga0335027_0648650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	635	Open in IMG/M
3300034102\|Ga0335029_0344201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	922	Open in IMG/M
3300034104\|Ga0335031_0622782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300034105\|Ga0335035_0040224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	3101	Open in IMG/M
3300034110\|Ga0335055_0167139	Not Available	987	Open in IMG/M
3300034117\|Ga0335033_0049559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	2569	Open in IMG/M
3300034168\|Ga0335061_0312665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	821	Open in IMG/M
3300034280\|Ga0334997_0838098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila limnetica	551	Open in IMG/M
3300034284\|Ga0335013_0400209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales	845	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.35%
Terrestrial	Environmental → Terrestrial	0.83%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	82.64%
Marine	Environmental → Aquatic → Marine	15.70%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.83%
Leaf	Host-Associated → Plants → Leaf	0.83%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	47.93%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.88%
River	Environmental → Aquatic → Freshwater → River	9.92%
Coastal	Environmental → Aquatic → Marine → Coastal	6.61%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.31%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.48%
Creek	Environmental → Aquatic → Freshwater → Creek	1.65%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	47.93%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.74%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	9.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.61%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.79%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	5.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.31%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.48%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	19.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	15.70%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	9.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	9.09%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	5.79%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	5.79%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	4.96%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.31%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.48%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	2.48%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.65%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.65%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.65%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.65%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.83%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.83%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.83%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.83%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000206	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters	Environmental	Open in IMG/M
3300000268	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004772	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300007549	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300012968	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental	Open in IMG/M
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental	Open in IMG/M
3300018868	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020157	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020540	Freshwater microbial communities from Lake Mendota, WI - 13JUN2011 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021069	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-25m	Environmental	Open in IMG/M
3300021071	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-17m	Environmental	Open in IMG/M
3300021340	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-9m	Environmental	Open in IMG/M
3300021516	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m	Environmental	Open in IMG/M
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental	Open in IMG/M
3300021602	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m	Environmental	Open in IMG/M
3300021956	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022543	Indian_combined assembly	Environmental	Open in IMG/M
3300022747	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300024572	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024856	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025763	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026567	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026568	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027221	Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 (SPAdes)	Environmental	Open in IMG/M
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental	Open in IMG/M
3300027286	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d	Environmental	Open in IMG/M
3300027290	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8d	Environmental	Open in IMG/M
3300027300	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8d	Environmental	Open in IMG/M
3300027333	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d	Environmental	Open in IMG/M
3300027368	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d	Environmental	Open in IMG/M
3300027534	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d	Environmental	Open in IMG/M
3300027589	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8d	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental	Open in IMG/M
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300033992	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034021	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057	Environmental	Open in IMG/M
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental	Open in IMG/M
3300034051	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034110	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171	Environmental	Open in IMG/M
3300034117	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental	Open in IMG/M
3300034284	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
M3P_100451392	3300000206	Lotic	VKLARVTHIFAHRKSGEVQGSDMGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
M3P_100937172	3300000268	Lotic	VKLARVTHIFAHRKSGEVQASELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
M3P_101414811	3300000268	Lotic	VKLARVTHIFAHRKSGEVQGSDMGFYSLPTDNDLVTTTTFIYRNSPGRELTHNQMERGAA
JGI12421J11937_100359742	3300000756	Freshwater And Sediment	MKLVRVTHSFAHRKNGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
B570J14230_100320862	3300001282	Freshwater	VKLARVTHIFAHRKSGEVLGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
B570J40625_1002571263	3300002835	Freshwater	VTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNKMERGAA*
JGI25910J50241_101519351	3300003388	Freshwater Lake	MKLAHVTHSFAHRKSGEVKGSELGFXSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
JGI25922J50271_100019565	3300003413	Freshwater Lake	VKLARVTHIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
JGI25922J50271_100248392	3300003413	Freshwater Lake	MKLALVTHTFAHRKSGEVKGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGAA
JGI25922J50271_100703481	3300003413	Freshwater Lake	VKLARVTHIFAHRKSGEVQGFELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
Ga0066177_105257092	3300004096	Freshwater Lake	MKLALVTHTFAHRKSGEVNGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGAA
Ga0065166_103398241	3300004112	Freshwater Lake	MKLAHVTHSFAHRKSGEVKGSELGFRSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0007791_100654411	3300004772	Freshwater	VKLARVTHIFAHRKSGEVQGSELGFCSLPTDIALVTTTTFIYKYSPDRELTHNELNRGAA
Ga0078894_103994192	3300005662	Freshwater Lake	MKLAHVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0078894_108205892	3300005662	Freshwater Lake	VKLDRVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHMRMKRGAA
Ga0078894_108527421	3300005662	Freshwater Lake	VGNLQVIEIETRESGCEVELASVTHIFAHRKSGEVKGFELGFYSLPTDIALVTTTTFIYKNSPGKELTHKKSNRGAA*
Ga0075470_100487462	3300006030	Aqueous	MKLARVTHIFAHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA*
Ga0075470_101138732	3300006030	Aqueous	VELARVTHIFAHRKSGEVQGSELGFYSLPTDITLVTTTTFIYRNSPDRELTHNEL
Ga0079301_10610332	3300006639	Deep Subsurface	LARVTHIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA*
Ga0075471_101187332	3300006641	Aqueous	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA*
Ga0075464_103078421	3300006805	Aqueous	VKLARVTHTFAHRKSGEVKGSELGFCTLPTDIALVTTTNFIYKYSPDRELTHNELNRGAA
Ga0075473_103395281	3300006875	Aqueous	RVTHIFAHRKSGEVQGSELDFCSLPTDIALVTTTTFIYKNSLGKELTHNELNRGAA*
Ga0102879_10757122	3300007549	Estuarine	VELARVTHIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0102880_11009491	3300007550	Estuarine	FAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA*
Ga0102865_12250171	3300007639	Estuarine	MKLARVTHSFAHRKSGEVEGSELGFRSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0108970_111232172	3300008055	Estuary	MKLARVTHIFAHRKSGEEQGSELGFFSLPTDKALVTTTTFIYKNSSGRELTHNTIKEMKRGAA*
Ga0114341_105035701	3300008108	Freshwater, Plankton	MKLALVTHTFAHRKSGEVNGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGA
Ga0114354_10302162	3300008119	Freshwater, Plankton	MKLALVTHTFAHRKSGEVNGSELGFPSLPTDIALVTTTTFIYKNSSCKELTHNKSNRGAA
Ga0102815_102599662	3300009080	Estuarine	VELARVTHIFAHRKSGEVQGFELGFYSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0114968_103143842	3300009155	Freshwater Lake	CVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQTERGAA*
Ga0114968_107491872	3300009155	Freshwater Lake	CVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA*
Ga0114977_103142792	3300009158	Freshwater Lake	MKLARVTHSFAHRKSGELQGPELGFSSLPTDIALVTTTTFIYKNVSGGELTHNQMERGAA
Ga0114978_105542471	3300009159	Freshwater Lake	RGCVMKLARVTHSFTHRKSGELQGSELGLSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGEA*
Ga0114974_100838541	3300009183	Freshwater Lake	MKLARVTHSFAHRKSGELQGPELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0114976_101679312	3300009184	Freshwater Lake	VTHSFAHRKSGDLQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA*
Ga0114976_103872042	3300009184	Freshwater Lake	THSFTHRKGGEVKGSELGFYALPTNNALVTTTTFIYSNSPGRELTHNQMERGAA*
Ga0114976_104728522	3300009184	Freshwater Lake	VEKGCVVKLARITHIFAHRKSGEVKGSELGFCALPTDIALVTTTTFIYKNSPDREPTHNELNRGAA*
Ga0114967_101405421	3300010160	Freshwater Lake	ERGCVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA*
Ga0114967_103897071	3300010160	Freshwater Lake	ERGCVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTATTFIYKNVSGRELTHNQMERGAA*
Ga0129336_102823862	3300010370	Freshwater To Marine Saline Gradient	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGKELTH
Ga0133913_103882271	3300010885	Freshwater Lake	THIFAHRKSGEVKGSELGFCALPTDIALVTTTTFIYKNSPDREPTHNELNRGAA*
Ga0133913_115641651	3300010885	Freshwater Lake	CVMKLVRVTHNFAHRNNGLVKGSELGFRSLPTDIALVTTTTFIHKNSPVGELTHKRSKRGAA*
Ga0129318_100708942	3300011009	Freshwater To Marine Saline Gradient	VGNLQVVDRSTGESGCEVKLARVTHIFAHRNGGEVKGSELGFCSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA*
Ga0129337_14046012	3300012968	Aqueous	MKLALVTHTFAHRKSGEVNGSELGFPSLPTDIALVTTTTFIYKNLSGKELTHNKSNRGAA
Ga0164293_107155872	3300013004	Freshwater	QGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNTMADTRMKRGAA*
Ga0164292_101672361	3300013005	Freshwater	EVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNTMADTRMKRGAA*
Ga0164292_104602871	3300013005	Freshwater	MKLARVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSSGRELTHNTMTDKRMKRGAA*
Ga0164295_103367411	3300013014	Freshwater	HSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYTKVSGREPTHNQMERGAA*
Ga0187844_101546342	3300018868	Freshwater	MKLARVTHSFAHRKSGEVKGSELGFRSLPTDNALVTTTTFINTNVFGRELTHNQMERGAA
Ga0211732_11863752	3300020141	Freshwater	MKLARVTHSFAHRKSGEVQGSEQGFHSLPTDNALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0194049_10977121	3300020157	Anoxic Zone Freshwater	MKLAHVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNP
Ga0211733_107913032	3300020160	Freshwater	MKLARVTHNFAHRKSGEVQGSEQGFRSLPTDNALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0211735_100663852	3300020162	Freshwater	MKLARVTHSFAHRKSGEVQGSEQGFHSLPTDNALVTTSTFIYKNVSGRELTHNQMERGAA
Ga0211735_108456261	3300020162	Freshwater	RGCVVKLGRVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNTITDKRMKRGAA
Ga0211729_106752122	3300020172	Freshwater	MKLARVTHNFAHRKSGEVQGSEQGFRSLPTDNALVTTTTFIYKNVSRRELTHNQMERGAA
Ga0208227_10565852	3300020540	Freshwater	QGSDMGFYSLPTDNALVTTTTFIYRNSSGRELTHNTMTDKRMKRGAA
Ga0194062_12005582	3300021069	Anoxic Zone Freshwater	MELAHVTHSFAHRKSGELQGSELGFSFLPTDIALVTTTTFIYKNVSGRELTHNQMERGAT
Ga0194058_100713222	3300021071	Anoxic Zone Freshwater	VEERGCVMKLAHVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAT
Ga0194041_100240133	3300021340	Anoxic Zone Freshwater	SRGKGCVMKLASVTHSFAHRKSGELQGSELGFYSLPTDNTLVTTTTFIYKNVSGRELTHNQMERGAA
Ga0194045_11870682	3300021516	Anoxic Zone Freshwater	MKLASVTHSFAHRKSGELQGSELGFYSLPTDNTLVTTTTFIYKNVSGRELTHNQMERGAA
Ga0194048_100743022	3300021519	Anoxic Zone Freshwater	VKERGCVMKLASVAHSFTHKKGGDSQGSELGFSFLPTDNTLVTTTTFIYKNVSGRELTHNTMGRGAA
Ga0194060_100470372	3300021602	Anoxic Zone Freshwater	MKLASVAHSFTHKKGGDSQGSELGFSFLPTDNTLVTTTTLIYKNVSGRELTHNTMGRGAA
Ga0213922_10139812	3300021956	Freshwater	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0222713_106803792	3300021962	Estuarine Water	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDKALVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0222712_101948952	3300021963	Estuarine Water	MERGCVMKLACVTHIFTHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0222712_101970161	3300021963	Estuarine Water	MERGCVMKLARVTHIFAHRKSGEEQGFELGFCSLPTDNALVTTTTFIYKNSSGRELTHNTIKETKRGAA
Ga0222712_103172621	3300021963	Estuarine Water	MKLTLVTHTFAHRKSGEVQGSVLGFYLLPTDITPVTTTTFIYRNSPDRELTHKRLNR
Ga0212119_10493742	3300022543	Freshwater	MKLALVTHTFAHRKSGEVSGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGAA
Ga0228703_10191822	3300022747	Freshwater	MKLARVTHIFAHRKSGEEQGSELGFFSLPTDNTLVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0214923_100374494	3300023179	Freshwater	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDNTLVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0244776_109448451	3300024348	Estuarine	KQRGCAMKLARVTHSFAHRKSGEVEGSELGFRSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0255268_11701121	3300024572	Freshwater	MERGCVMKLARVTHIFAHRKSGEEQGSELGFFSLPTDNTLVTTTTFIYKNSSGREPTHNTIKEMKRGAA
Ga0256304_11288061	3300024856	Freshwater	VKLARVTHIFAHRKSGEEQGSELGFFSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0255250_11438352	3300025763	Freshwater	MKLAHVTHSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQ
Ga0256303_11150621	3300026567	Freshwater	MKLARVTHIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNR
Ga0255240_10846882	3300026568	Freshwater	MKLARVTHSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYKNSSGRELTHNTIKEMKRGAA
Ga0208557_10750931	3300027221	Estuarine	VELARITHIFAHRKSGEIQGFELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGA
Ga0208026_10460842	3300027236	Estuarine	VELARVTHIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRG
Ga0255129_10373902	3300027286	Freshwater	VKERSCVMKLAHVTHSFAHRKSGEVKGSELGFRSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0255136_10593732	3300027290	Freshwater	ERGCVMKLAHVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0255140_10493702	3300027300	Freshwater	SFAHRKSGEVKGSELGFRSLPTDNALVTTTTFIYTNVSGKELTHNQMERGAA
Ga0255138_10895401	3300027333	Freshwater	MKLVRVTHSFAHRKNGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGKELTHNQMERGAA
Ga0255133_11023591	3300027368	Freshwater	MKLVRVTHSFAHRKNGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHN
Ga0255125_10476782	3300027534	Freshwater	MKLARVTHSFAHRKSGEVKGSELGFRSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAT
Ga0255123_10306992	3300027589	Freshwater	MKLAHVTHSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0208974_11721351	3300027608	Freshwater Lentic	MKLAHVTHSFAHRKSGEVKGFELGFRSLPTDNALVTTTTFIYTNVSGKELTHNQMERGAA
Ga0209190_11905132	3300027736	Freshwater Lake	GCVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQTERGAA
Ga0209597_11478552	3300027746	Freshwater Lake	MKLARVTHSFAHRKSGELQGSELGFLSLPTDIALVTTTTFMYKNVSGRELTHNQMERGAA
Ga0209596_10364721	3300027754	Freshwater Lake	RRVEERGCVMKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0209296_10234664	3300027759	Freshwater Lake	MKLARVTHSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQMERGAA
Ga0209770_100976942	3300027769	Freshwater Lake	MKLALVTHIFAHRKSGEVKGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGAA
Ga0209107_100526701	3300027797	Freshwater And Sediment	KERGCVMKLAHVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0209358_105282871	3300027804	Freshwater Lake	SFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRSSPGRELTHMRMKRGAA
Ga0209400_12721561	3300027963	Freshwater Lake	THSFAHRKSGELQGSELGFSSLPTDIALVTTTTTFIYKNVSGRELTHNQMERGAA
Ga0209400_13783891	3300027963	Freshwater Lake	THSFAHRKSGELQGSELGFSSLPTDIALVTTTTFIYKNVSGRELTHNQTERGAA
Ga0209401_11524832	3300027971	Freshwater Lake	RVTHSFAHRKSGELQGSELGFLSLPTDIALVTTTTFMYKNVSGRELTHNQMERGAA
Ga0315899_103598691	3300031784	Freshwater	GNLQVLKKTREVKGCEVKLTLVTHTFAHRKSGEVKGSELGFHSLPTDIALVTTTTFIYKNSLGKELTHNELNRGAA
Ga0315908_105202902	3300031786	Freshwater	HIFAHRKSGEVQGSELGFYSLPTDISLVTTTTFIYRDSPDRELTHNKTNRGAA
Ga0315901_101660081	3300031963	Freshwater	EKGCEVELARITHIFAHRKSGEVQGSELGFYSLPTDITLVTTTTFIYRNSPDRELTHNELNRGAA
Ga0315901_103006222	3300031963	Freshwater	FLWVTNKLFNEKRKEKGCEVELARVTHIFAHRKSGEVQGSELGFYSLPTDISLVTTTTFIYRNSPDRELTHNKSNRGAA
Ga0315905_103683542	3300032092	Freshwater	MKLVLVTHTFAHRKSGEVKGSELGFYSLPTDITLVTTTTLIYKNSSGKELTHNKSNRGAA
Ga0315905_115491212	3300032092	Freshwater	FTHRKSGEVKGSELGFHSLPTDIALVTTTTFIYKNSLGKELTHNELNRGAA
Ga0334992_0434875_419_580	3300033992	Freshwater	HIFAHRKSGEVQGSELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
Ga0334996_0423114_254_436	3300033994	Freshwater	MKLALVTHIFAHRKSGEVKGSELGFPSLPTDIALVTTTTFIYKNSFGKELTHNKSNRGAA
Ga0335004_0350366_592_774	3300034021	Freshwater	MKLALVTHTFAHRKSGEVKGSELGFPSLPTDIALVTTTTFIYKNSFGKELTHNKSNRGAA
Ga0335023_0083811_1198_1398	3300034050	Freshwater	MERGCVMKLAHVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335024_0575583_2_157	3300034051	Freshwater	FAHRKSGEVNGSELGFPSLPTDIALVTTTTFIYKNSSGKELTHNKSNRGAA
Ga0334987_0486850_192_374	3300034061	Freshwater	MKLARVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335020_0255453_500_697	3300034082	Freshwater	MKLDRVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSSGRELTHNTMTDKRMKRGAA
Ga0335020_0392269_498_668	3300034082	Freshwater	RVTHIFAHRKSGEVQGFELGFYSLPTDIALVTTTTFIYRNSPDRELTHNELNRGAA
Ga0335012_0012741_2_166	3300034093	Freshwater	THSFAHKKSGEVKGSELGFHSLPTDIALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335012_0202369_278_460	3300034093	Freshwater	MKLALVTHIFAHRKSGEVKGSELGLPSLPTDIALVTTTTFIYKNSFGKELTHNKSNRGAA
Ga0335027_0648650_489_635	3300034101	Freshwater	MKLAHVTHSFAHRKSGEVKGSELGFHSLPTDIALVTTTTFIYTNVSGRE
Ga0335029_0344201_3_164	3300034102	Freshwater	MKLARVTHSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQ
Ga0335031_0622782_465_632	3300034104	Freshwater	MKLAHVTHSFAHKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQME
Ga0335035_0040224_2774_2956	3300034105	Freshwater	MKLARVTHSFAHKKSGEVKGSELGFHSLPTDIALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335055_0167139_803_985	3300034110	Freshwater	MKLACVTHSFAHRKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335033_0049559_2419_2568	3300034117	Freshwater	HKKSGEVKGSELGFHSLPTDNALVTTTTFIYTNVSGRELTHNQMERGAA
Ga0335061_0312665_3_164	3300034168	Freshwater	MKLARVTHSFAHRKSGEVKGSELGFHSLPTDIALVTTTTFIYTNVSGRELTHNQ
Ga0334997_0838098_64_261	3300034280	Freshwater	MKLDRVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNTMTDKRMKRGAA
Ga0335013_0400209_223_420	3300034284	Freshwater	MKLDRVTHSFAHRKSGEVQGSDMGFYSLPTDNALVTTTTFIYRNSPGRELTHNTMADTRMKRGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072281

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences